Psyllid ID: psy12938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610--
Protein Sequence
VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTLQNETEEEDENTFTEFVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTVDDDSD
Secondary Structure (PSIPRED)
cccEEEEEccEEcccccHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHccccccEEEEEccEEcccccHHHHHHHHccccccEEEEEcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccHHHHHHHHHHccccEEEEEEEEccccccEEEEEEcccccccccccccEEEEEEccccccccccccccccccEEEEccccccccccccccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEcccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccccEEEEEEccEEEEEEEEccccccccccHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEcccEEHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHcccccEEEEEcccEEHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccHHccccccEccccccccccccccccccccccEEEEccccEEcccccEEEEccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEccccccEEEEEcccccHcHHHHHccEEEEEEcccccccccccEEEccccccEEEEEccccccccccccEEcccccHHHHHHHcccccEcccccccEcHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEEEEEccccccHHHHcccccccEEEEEEcccEEHHHHHHHHHHcHHHcHHHHHHHHHHccccccccccEEEccccccccc
Coil and Loop (DISEMBL)
vndqiievdgkslvGVTQEYAASVLRNTSGLVRFLIgrekdpvnSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIgrekdpvnSEVAQLIRQSLQPCltllnfgdpletgiissvgsmdeldrvsssrdsvtlqneteeedentftefvpeprveifeeggihyyedgnfwmeveglpdrdleladnsdegdvpvksntkvkfsmapikctyseslkpvlghmvgsnatldsysghsttledsyardlgstntledskYVYSTFsmneydrrnedvdpvaASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAgaaardgriqvrrgpkgvlkDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLseidseprhITVIahlsspslpaCRALNSSLAELSRshtnvkfvsvplgcvgdhfsatfktsglpamlayrggevvGNFVRLGEelgegyfveDVEAFLVEAGLLragglpgilrptvdddsd
Flexible Loop (DISEMBL)
vndqiievdgkslvgvTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDPLETGIISSVgsmdeldrvsssrdsvtlqneteeedentftefvpepRVEIFEEGGIHYYEDGNFWMEVEGLPDRDLELADNsdegdvpvksntkvkfsmapIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLEDsyardlgstntledskyVYSTFsmneydrrnedVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITeagaaardgriqvrrgpkgvlkdWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLlragglpgilrptvdddsd
Low Complexity Region (SEG)
VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTLQneteeedentftefVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSeearkeaemeaelkeleDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTVDDDSD
Disordered region (IsUnstruct)
*****IEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDPLETGIIS*********************************EFVPEPRVEIFEEGGIHYYEDGNFWMEVEGL***********************VKFSMAPIKCTYSESLKPVLGHMVGS*******************************KYVYSTFSM****************AEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLAL************************GFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGIL*********
Disordered Region (DISOPRED)
VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRF***********************************VGVTQEYAASVLRNTSG********************************************************************************************************************************************************************************************************************************LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSI*****************************D**********************************LAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLR*****************
Disordered Region (DISEMBL)
VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDPLETGIISSVGSMD**************************TEFVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQ************AELKELEDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTVDDDSD
Disordered Region (DISPRO)
VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNF******************************************TEFVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDR**********GDVP*KSNTKVKFSM********************************TTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGMGVG*******LGIFVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILR********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTLQNETEEEDENTFTEFVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGFLLEYQKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTVDDDSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	612	2.2.26 [Sep-21-2011]
Q9VUR7	276	Phosducin-like protein OS	no	N/A	0.299	0.663	0.385	4e-36
O35867	1095	Neurabin-1 OS=Rattus norv	yes	N/A	0.218	0.122	0.445	2e-34
Q9ULJ8	1098	Neurabin-1 OS=Homo sapien	no	N/A	0.217	0.121	0.442	1e-33
Q96SB3	815	Neurabin-2 OS=Homo sapien	no	N/A	0.161	0.121	0.699	1e-32
O35274	817	Neurabin-2 OS=Rattus norv	no	N/A	0.161	0.121	0.699	1e-32
Q6R891	817	Neurabin-2 OS=Mus musculu	no	N/A	0.161	0.121	0.699	1e-32
Q2HJA9	301	Phosducin-like protein OS	no	N/A	0.303	0.617	0.362	1e-30
Q13371	301	Phosducin-like protein OS	no	N/A	0.303	0.617	0.353	2e-30
Q63737	301	Phosducin-like protein OS	no	N/A	0.303	0.617	0.340	2e-29
Q9DBX2	301	Phosducin-like protein OS	no	N/A	0.303	0.617	0.331	7e-29

>sp|Q9VUR7|PHLP_DROME Phosducin-like protein OS=Drosophila melanogaster GN=CG7650 PE=1 SV=2

 Score =  153 bits (386), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/205 (38%), Positives = 121/205 (59%), Gaps = 22/205 (10%)

Query: 410 GPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSS---EEARKEAEMEAELKEL 466
           GPKGV+KDW++FKQ E + R + E QRLA  +KL +T  +S   EE +++ E++AEL EL
Sbjct: 67  GPKGVVKDWQRFKQLEAERRDETERQRLALAKKLTITATTSAEDEERKRQEELDAELDEL 126

Query: 467 EDDGFLLEYQKEKMKQMYDRL-----------------FLSEIDSEPRHITVIAHLSSPS 509
             + FL +YQK++M +M  +                  FL+ ++ E +H T+I H+    
Sbjct: 127 MSEDFLQQYQKQRMAEMLRQTGHHQQFGQVQQLTSHEEFLACVEQENKHTTIIIHIYERQ 186

Query: 510 LPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV 569
           L AC  LN  L  L+  + ++KF  +     G   S  F+T GLPA+L Y+   V+GNFV
Sbjct: 187 LAACATLNKCLDSLASDYPSIKFAKICSSVAG--MSRDFRTKGLPALLVYKAQAVIGNFV 244

Query: 570 RLGEELGEGYFVEDVEAFLVEAGLL 594
           RL ++L + +F  DVE+FL+E G++
Sbjct: 245 RLTDDLSDDFFASDVESFLIEHGII 269

Drosophila melanogaster (taxid: 7227)

>sp|O35867|NEB1_RAT Neurabin-1 OS=Rattus norvegicus GN=Ppp1r9a PE=1 SV=1

 Score =  147 bits (371), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 111/200 (55%), Gaps = 66/200 (33%)

Query: 180 HYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGH 239
           +YY+    + E+ GLP           E ++P  +N K+KFS APIK             
Sbjct: 432 NYYQPDMEYSEIVGLPQ----------EEEIP--ANRKIKFSCAPIK------------- 466

Query: 240 MVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAAS 299
                                                V++T+S  +YDRRN+DVDPVAAS
Sbjct: 467 -------------------------------------VFNTYSNEDYDRRNDDVDPVAAS 489

Query: 300 AEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARD 359
           AEYELEKRVEKL L  VEL K  +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RD
Sbjct: 490 AEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRD 549

Query: 360 GRIQGAEGL----GLSIIGM 375
           GRIQ  + +    G+S++G+
Sbjct: 550 GRIQVNDQIVEVDGISLVGV 569

Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May be involved in neurite formation. Inhibits protein phosphatase 1-alpha activity. May play an important role in linking the actin cytoskeleton to the plasma membrane at the synaptic junction.

Rattus norvegicus (taxid: 10116)

>sp|Q9ULJ8|NEB1_HUMAN Neurabin-1 OS=Homo sapiens GN=PPP1R9A PE=1 SV=2

 Score =  145 bits (366), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/199 (44%), Positives = 111/199 (55%), Gaps = 66/199 (33%)

Query: 181 YYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHM 240
           YY+    + E+ GLP+          E ++P  +N K+KFS APIK              
Sbjct: 432 YYQPDMEYSEIVGLPE----------EEEIP--ANRKIKFSSAPIK-------------- 465

Query: 241 VGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASA 300
                                               V++T+S  +YDRRN++VDPVAASA
Sbjct: 466 ------------------------------------VFNTYSNEDYDRRNDEVDPVAASA 489

Query: 301 EYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           EYELEKRVEKL L  VEL K  +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDG
Sbjct: 490 EYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDG 549

Query: 361 RIQGAEGL----GLSIIGM 375
           RIQ  + +    G+S++G+
Sbjct: 550 RIQVNDQIVEVDGISLVGV 568

Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May be involved in neurite formation. Inhibits protein phosphatase 1-alpha activity.

Homo sapiens (taxid: 9606)

>sp|Q96SB3|NEB2_HUMAN Neurabin-2 OS=Homo sapiens GN=PPP1R9B PE=1 SV=2

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 84/103 (81%), Gaps = 4/103 (3%)

Query: 277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
           V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct: 456 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 515

Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
           D GLEKLGIFVKT+TE GAA RDGRIQ  + L    G S++G+
Sbjct: 516 DMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 558

Seems to act as a scaffold protein in multiple signaling pathways. Modulates excitatory synaptic transmission and dendritic spine morphology. Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May play an important role in linking the actin cytoskeleton to the plasma membrane at the synaptic junction. Believed to target protein phosphatase 1/PP1 to dendritic spines, which are rich in F-actin, and regulates its specificity toward ion channels and other substrates, such as AMPA-type and NMDA-type glutamate receptors. Plays a role in regulation of G-protein coupled receptor signaling, including dopamine D2 receptors and alpha-adrenergic receptors. May establish a signaling complex for dopaminergic neurotransmission through D2 receptors by linking receptors downstream signaling molecules and the actin cytoskeleton. Binds to ADRA1B and RGS2 and mediates regulation of ADRA1B signaling. May confer to Rac signaling specificity by binding to both, RacGEFs and Rac effector proteins. Probably regulates p70 S6 kinase activity by forming a complex with TIAM1 (By similarity). Required for hepatocyte growth factor (HGF)-induced cell migration.

Homo sapiens (taxid: 9606)

>sp|O35274|NEB2_RAT Neurabin-2 OS=Rattus norvegicus GN=Ppp1r9b PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 84/103 (81%), Gaps = 4/103 (3%)

Query: 277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
           V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct: 458 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 517

Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
           D GLEKLGIFVKT+TE GAA RDGRIQ  + L    G S++G+
Sbjct: 518 DMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 560

Seems to act as a scaffold protein in multiple signaling pathways. Modulates excitatory synaptic transmission and dendritic spine morphology. Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May play an important role in linking the actin cytoskeleton to the plasma membrane at the synaptic junction. Believed to target protein phosphatase 1/PP1 to dendritic spines, which are rich in F-actin, and regulates its specificity toward ion channels and other substrates, such as AMPA-type and NMDA-type glutamate receptors. Plays a role in regulation of G-protein coupled receptor signaling, including dopamine D2 receptors and alpha-adrenergic receptors. May establish a signaling complex for dopaminergic neurotransmission through D2 receptors by linking receptors downstream signaling molecules and the actin cytoskeleton. Binds to ADRA1B and RGS2 and mediates regulation of ADRA1B signaling. May confer to Rac signaling specificity by binding to both, RacGEFs and Rac effector proteins. Probably regulates p70 S6 kinase activity by forming a complex with TIAM1. Required for hepatocyte growth factor (HGF)-induced cell migration.

Rattus norvegicus (taxid: 10116)

>sp|Q6R891|NEB2_MOUSE Neurabin-2 OS=Mus musculus GN=Ppp1r9b PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 84/103 (81%), Gaps = 4/103 (3%)

Query: 277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
           V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct: 458 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 517

Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
           D GLEKLGIFVKT+TE GAA RDGRIQ  + L    G S++G+
Sbjct: 518 DMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 560

Seems to act as a scaffold protein in multiple signaling pathways. Modulates excitatory synaptic transmission and dendritic spine morphology. Binds to actin filaments (F-actin) and shows cross-linking activity. Binds along the sides of the F-actin. May play an important role in linking the actin cytoskeleton to the plasma membrane at the synaptic junction. Believed to target protein phosphatase 1/PP1 to dendritic spines, which are rich in F-actin, and regulates its specificity toward ion channels and other substrates, such as AMPA-type and NMDA-type glutamate receptors. Plays a role in regulation of G-protein coupled receptor signaling, including dopamine D2 receptors and alpha-adrenergic receptors. May establish a signaling complex for dopaminergic neurotransmission through D2 receptors by linking receptors downstream signaling molecules and the actin cytoskeleton. Binds to ADRA1B and RGS2 and mediates regulation of ADRA1B signaling. May confer to Rac signaling specificity by binding to both, RacGEFs and Rac effector proteins. Probably regulates p70 S6 kinase activity by forming a complex with TIAM1. Required for hepatocyte growth factor (HGF)-induced cell migration.

Mus musculus (taxid: 10090)

>sp|Q2HJA9|PHLP_BOVIN Phosducin-like protein OS=Bos taurus GN=PDCL PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 40/226 (17%)

Query: 405 IQVRRGPKGVLKDWEQFKQYECQMRRD--KELQRLAQIQKLALTCQSS----EEARKEAE 458
           I V  GPKGV+ DW +FKQ E + R +  +E++RL  I+KL+L+C+S     EE RK+ +
Sbjct: 53  ISVNTGPKGVINDWRRFKQLETEQREEQCREMERL--IKKLSLSCRSHLDEEEEQRKQKD 110

Query: 459 MEAE------LKEL-------EDDGFLLEYQKEKMKQMYDRL-----------------F 488
           ++ +      LK+L       +D+ FL +Y+K++M++M  +L                 F
Sbjct: 111 LQEKISGKMTLKDLAVMNEDQDDEEFLQQYRKQRMEEMRQQLYQGPQFKQVFEIPSGEGF 170

Query: 489 LSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATF 548
           L  ID E R   ++ H+    +P   A+N  +  L+  +  VKF  V    +G   S+ F
Sbjct: 171 LDMIDKEQRSTLIMVHIYEDGIPGTEAMNGCMLCLAAEYPAVKFCRVRSSVIG--ASSRF 228

Query: 549 KTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
             + LPA+L Y+GGE++GNFVR+ ++LGE +F  D+EAFL E GLL
Sbjct: 229 TRNALPALLIYKGGELIGNFVRVTDQLGEDFFAVDLEAFLQEFGLL 274

Bos taurus (taxid: 9913)

>sp|Q13371|PHLP_HUMAN Phosducin-like protein OS=Homo sapiens GN=PDCL PE=1 SV=3

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 128/226 (56%), Gaps = 40/226 (17%)

Query: 405 IQVRRGPKGVLKDWEQFKQYECQMRRD--KELQRLAQIQKLALTCQSS----EEARKEAE 458
           I V  GPKGV+ DW +FKQ E + R +  +E++RL  I+KL++TC+S     EE +K+ +
Sbjct: 53  ISVNTGPKGVINDWRRFKQLETEQREEQCREMERL--IKKLSMTCRSHLDEEEEQQKQKD 110

Query: 459 MEAE------LKEL-------EDDGFLLEYQKEKMKQMYDRL-----------------F 488
           ++ +      LKE        +D+ FL +Y+K++M++M  +L                 F
Sbjct: 111 LQEKISGKMTLKEFAIMNEDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEISSGEGF 170

Query: 489 LSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATF 548
           L  ID E + I ++ H+    +P   A+N  +  L+  +  VKF  V    +G   S+ F
Sbjct: 171 LDMIDKEQKSIVIMVHIYEDGIPGTEAMNGCMICLAAEYPAVKFCKVKSSVIG--ASSQF 228

Query: 549 KTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
             + LPA+L Y+GGE++GNFVR+ ++LG+ +F  D+EAFL E GLL
Sbjct: 229 TRNALPALLIYKGGELIGNFVRVTDQLGDDFFAVDLEAFLQEFGLL 274

Homo sapiens (taxid: 9606)

>sp|Q63737|PHLP_RAT Phosducin-like protein OS=Rattus norvegicus GN=Pdcl PE=1 SV=1

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 40/226 (17%)

Query: 405 IQVRRGPKGVLKDWEQFKQYECQMRRD--KELQRLAQIQKLALTCQSS----EEARKEAE 458
           I V  GPKGV+ DW +FKQ E + R +  +E++RL  I+KL+++C+S     EE +K+ +
Sbjct: 53  ISVNTGPKGVINDWRRFKQLETEQREEQCREMERL--IKKLSMSCRSHLDEEEEQQKQKD 110

Query: 459 MEAEL-------------KELEDDGFLLEYQKEKMKQMYDRL-----------------F 488
           ++ ++             K L+D+ FL +Y+K++M +M  +L                 F
Sbjct: 111 LQEKISGKMTLKECGMMDKNLDDEEFLQQYRKQRMDEMRQQLHKGPQFKQVLEIPSGEGF 170

Query: 489 LSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATF 548
           L  ID E +   ++ H+    +P   A+N  +  L+  +  VKF  V    +G   S+ F
Sbjct: 171 LDMIDKEQKSTLIMVHIYEDGVPGTEAMNGCMICLAAEYPTVKFCRVRSSVIG--ASSRF 228

Query: 549 KTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
             + LPA+L Y+ GE++GNFVR+ ++LGE +F  D+EAFL E GLL
Sbjct: 229 TRNALPALLIYKAGELIGNFVRVTDQLGEDFFAVDLEAFLQEFGLL 274

Rattus norvegicus (taxid: 10116)

>sp|Q9DBX2|PHLP_MOUSE Phosducin-like protein OS=Mus musculus GN=Pdcl PE=1 SV=1

 Score =  129 bits (324), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 125/226 (55%), Gaps = 40/226 (17%)

Query: 405 IQVRRGPKGVLKDWEQFKQYECQMRRD--KELQRLAQIQKLALTCQSS----EEARKEAE 458
           I +  GPKGV+ DW +FKQ E + R +  +E++RL  I+KL+++C+S     EE +K+ +
Sbjct: 53  ISINTGPKGVINDWRRFKQLETEQREEQCREMERL--IKKLSMSCRSHLDEEEEQQKQKD 110

Query: 459 MEAEL-------------KELEDDGFLLEYQKEKMKQMYDRL-----------------F 488
           ++ ++             K L+D+ FL +Y+K++M++M  +                  F
Sbjct: 111 LQEKISGKMTLKEFGTKDKNLDDEEFLQQYRKQRMEEMRQQFHKGPQFKQVFEIPSGEGF 170

Query: 489 LSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATF 548
           L  ID E +   ++ H+    +P   A+N  +  L+  +  VKF  V    +G   S+ F
Sbjct: 171 LDMIDKEQKSTLIMVHIYEDGVPGTEAMNGCMICLATEYPAVKFCRVRSSVIG--ASSRF 228

Query: 549 KTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
             + LPA+L Y+ GE++GNFVR+ ++LGE +F  D+EAFL E GLL
Sbjct: 229 TRNALPALLIYKAGELIGNFVRVTDQLGEDFFAVDLEAFLQEFGLL 274

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	612
328702483	1374	PREDICTED: hypothetical protein LOC10016	0.266	0.118	0.533	9e-54
328702487	1363	PREDICTED: hypothetical protein LOC10016	0.266	0.119	0.533	9e-54
328702481	1381	PREDICTED: hypothetical protein LOC10016	0.266	0.118	0.533	9e-54
328702485	1356	PREDICTED: hypothetical protein LOC10016	0.266	0.120	0.533	9e-54
198466608	2194	GA14130 [Drosophila pseudoobscura pseudo	0.436	0.121	0.391	4e-50
195170900	1712	GL24607 [Drosophila persimilis] gi|19411	0.436	0.155	0.391	5e-50
194746916	2205	GF24861 [Drosophila ananassae] gi|190623	0.436	0.121	0.391	1e-49
194865152	2479	GG14511 [Drosophila erecta] gi|190653070	0.436	0.107	0.388	2e-49
195439976	2245	GK12507 [Drosophila willistoni] gi|19416	0.436	0.118	0.388	3e-49
386770403	2148	spinophilin, isoform J [Drosophila melan	0.436	0.124	0.388	3e-49

>gi|328702483|ref|XP_003241913.1| PREDICTED: hypothetical protein LOC100162635 isoform 3 [Acyrthosiphon pisum]

 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 136/225 (60%), Gaps = 62/225 (27%)

Query: 146 DSVTLQNETEEEDENTF-------TEFVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDRD 198
           D+++  NE+ E DE           EF+PEP  E++EEGG+HYYEDG+FWMEV GLP+RD
Sbjct: 553 DTLSANNESAEFDEYEVDGDLYKSKEFIPEPTREVYEEGGVHYYEDGHFWMEVPGLPERD 612

Query: 199 LELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLE 258
                + DE  + VK N KVKFS  PIK                                
Sbjct: 613 -----SDDESHIVVKQNMKVKFSADPIK-------------------------------- 635

Query: 259 DSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVEL 318
                             VYSTFSM EYDRRNEDVDPVAASAEYELEKRVE+L L+ V L
Sbjct: 636 ------------------VYSTFSMGEYDRRNEDVDPVAASAEYELEKRVERLDLIKVIL 677

Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +KG EGLGLSIIGMGVGAD GLEKLGIFVKTIT  GAAA+DGRIQ
Sbjct: 678 LKGPEGLGLSIIGMGVGADTGLEKLGIFVKTITPDGAAAKDGRIQ 722

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702487|ref|XP_003241914.1| PREDICTED: hypothetical protein LOC100162635 isoform 4 [Acyrthosiphon pisum]

 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 136/225 (60%), Gaps = 62/225 (27%)

Query: 146 DSVTLQNETEEEDENTF-------TEFVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDRD 198
           D+++  NE+ E DE           EF+PEP  E++EEGG+HYYEDG+FWMEV GLP+RD
Sbjct: 560 DTLSANNESAEFDEYEVDGDLYKSKEFIPEPTREVYEEGGVHYYEDGHFWMEVPGLPERD 619

Query: 199 LELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLE 258
                + DE  + VK N KVKFS  PIK                                
Sbjct: 620 -----SDDESHIVVKQNMKVKFSADPIK-------------------------------- 642

Query: 259 DSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVEL 318
                             VYSTFSM EYDRRNEDVDPVAASAEYELEKRVE+L L+ V L
Sbjct: 643 ------------------VYSTFSMGEYDRRNEDVDPVAASAEYELEKRVERLDLIKVIL 684

Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +KG EGLGLSIIGMGVGAD GLEKLGIFVKTIT  GAAA+DGRIQ
Sbjct: 685 LKGPEGLGLSIIGMGVGADTGLEKLGIFVKTITPDGAAAKDGRIQ 729

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702481|ref|XP_003241912.1| PREDICTED: hypothetical protein LOC100162635 isoform 2 [Acyrthosiphon pisum]

 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 136/225 (60%), Gaps = 62/225 (27%)

Query: 146 DSVTLQNETEEEDENTF-------TEFVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDRD 198
           D+++  NE+ E DE           EF+PEP  E++EEGG+HYYEDG+FWMEV GLP+RD
Sbjct: 560 DTLSANNESAEFDEYEVDGDLYKSKEFIPEPTREVYEEGGVHYYEDGHFWMEVPGLPERD 619

Query: 199 LELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLE 258
                + DE  + VK N KVKFS  PIK                                
Sbjct: 620 -----SDDESHIVVKQNMKVKFSADPIK-------------------------------- 642

Query: 259 DSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVEL 318
                             VYSTFSM EYDRRNEDVDPVAASAEYELEKRVE+L L+ V L
Sbjct: 643 ------------------VYSTFSMGEYDRRNEDVDPVAASAEYELEKRVERLDLIKVIL 684

Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +KG EGLGLSIIGMGVGAD GLEKLGIFVKTIT  GAAA+DGRIQ
Sbjct: 685 LKGPEGLGLSIIGMGVGADTGLEKLGIFVKTITPDGAAAKDGRIQ 729

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328702485|ref|XP_001943518.2| PREDICTED: hypothetical protein LOC100162635 isoform 1 [Acyrthosiphon pisum]

 Score =  218 bits (554), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 120/225 (53%), Positives = 136/225 (60%), Gaps = 62/225 (27%)

Query: 146 DSVTLQNETEEEDENTF-------TEFVPEPRVEIFEEGGIHYYEDGNFWMEVEGLPDRD 198
           D+++  NE+ E DE           EF+PEP  E++EEGG+HYYEDG+FWMEV GLP+RD
Sbjct: 553 DTLSANNESAEFDEYEVDGDLYKSKEFIPEPTREVYEEGGVHYYEDGHFWMEVPGLPERD 612

Query: 199 LELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLE 258
                + DE  + VK N KVKFS  PIK                                
Sbjct: 613 -----SDDESHIVVKQNMKVKFSADPIK-------------------------------- 635

Query: 259 DSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVEL 318
                             VYSTFSM EYDRRNEDVDPVAASAEYELEKRVE+L L+ V L
Sbjct: 636 ------------------VYSTFSMGEYDRRNEDVDPVAASAEYELEKRVERLDLIKVIL 677

Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +KG EGLGLSIIGMGVGAD GLEKLGIFVKTIT  GAAA+DGRIQ
Sbjct: 678 LKGPEGLGLSIIGMGVGADTGLEKLGIFVKTITPDGAAAKDGRIQ 722

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198466608|ref|XP_001354060.2| GA14130 [Drosophila pseudoobscura pseudoobscura] gi|198150679|gb|EAL29798.2| GA14130 [Drosophila pseudoobscura pseudoobscura]

 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 140/358 (39%), Positives = 181/358 (50%), Gaps = 91/358 (25%)

Query: 118  LNFGDPLETGIISSV-GSMDELDRVSSSRDSVTLQNETEEEDENTF--TEFVPEPRVEIF 174
            LN    ++  IISS   S   LD+     +S  L     E D++ +   E+ P    E+ 
Sbjct: 1137 LNQTTTIDDSIISSKHNSTYSLDQAEPVTNSTVLSTGITELDDSQYYIPEYPPVRSKEVL 1196

Query: 175  EEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLK 234
             E G+HY+EDGNFWMEV GL D D    D+     + V+ N KV+FS  PI         
Sbjct: 1197 VEAGVHYFEDGNFWMEVPGLLDFD---DDDCSYPPITVRKNPKVRFSSGPI--------- 1244

Query: 235  PVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVD 294
                                                     +VYSTFS+N+YDRRNEDVD
Sbjct: 1245 -----------------------------------------HVYSTFSVNDYDRRNEDVD 1263

Query: 295  PVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAG 354
            PVAASAEYELEKRVEK+ +  VELMKG EGLGLSIIGMGVGADAGLEKLGIFVKTIT+ G
Sbjct: 1264 PVAASAEYELEKRVEKMHVFPVELMKGPEGLGLSIIGMGVGADAGLEKLGIFVKTITDNG 1323

Query: 355  AAARDGRIQGAEGL----GLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRG 410
            AAARDGRIQ  + +    G S++G                  +T+A AA+          
Sbjct: 1324 AAARDGRIQVNDQIIEVDGKSLVG------------------VTQAYAAS---------- 1355

Query: 411  PKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELED 468
               VL++     +++    RD E   +AQ+ +L+L     +E R + + E  L+   D
Sbjct: 1356 ---VLRNTSGLVKFQIGRERDPENSEVAQLIRLSLQADREKEERLKRQQEEYLRRTLD 1410

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195170900|ref|XP_002026249.1| GL24607 [Drosophila persimilis] gi|194111144|gb|EDW33187.1| GL24607 [Drosophila persimilis]

 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 140/358 (39%), Positives = 181/358 (50%), Gaps = 91/358 (25%)

Query: 118 LNFGDPLETGIISSV-GSMDELDRVSSSRDSVTLQNETEEEDENTF--TEFVPEPRVEIF 174
           LN    ++  IISS   S   LD+     +S  L     E D++ +   E+ P    E+ 
Sbjct: 655 LNQTTTIDDSIISSKHNSTYSLDQAEPVTNSTVLSTGITELDDSQYYIPEYPPVRSKEVL 714

Query: 175 EEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLK 234
            E G+HY+EDGNFWMEV GL D D    D+     + V+ N KV+FS  PI         
Sbjct: 715 VEAGVHYFEDGNFWMEVPGLLDFD---DDDCSYPPITVRKNPKVRFSSGPI--------- 762

Query: 235 PVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVD 294
                                                    +VYSTFS+N+YDRRNEDVD
Sbjct: 763 -----------------------------------------HVYSTFSVNDYDRRNEDVD 781

Query: 295 PVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAG 354
           PVAASAEYELEKRVEK+ +  VELMKG EGLGLSIIGMGVGADAGLEKLGIFVKTIT+ G
Sbjct: 782 PVAASAEYELEKRVEKMHVFPVELMKGPEGLGLSIIGMGVGADAGLEKLGIFVKTITDNG 841

Query: 355 AAARDGRIQGAEGL----GLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRG 410
           AAARDGRIQ  + +    G S++G                  +T+A AA+          
Sbjct: 842 AAARDGRIQVNDQIIEVDGKSLVG------------------VTQAYAAS---------- 873

Query: 411 PKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELED 468
              VL++     +++    RD E   +AQ+ +L+L     +E R + + E  L+   D
Sbjct: 874 ---VLRNTSGLVKFQIGRERDPENSEVAQLIRLSLQADREKEERLKRQQEEYLRRTLD 928

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194746916|ref|XP_001955900.1| GF24861 [Drosophila ananassae] gi|190623182|gb|EDV38706.1| GF24861 [Drosophila ananassae]

 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 140/358 (39%), Positives = 181/358 (50%), Gaps = 91/358 (25%)

Query: 118  LNFGDPLETGIISSV-GSMDELDRVSSSRDSVTLQNETEEEDENTF--TEFVPEPRVEIF 174
            LN    ++  IISS   S   L  V  + +S  L     E D++ +   E+ P    E+ 
Sbjct: 1185 LNQTTTIDDSIISSKHNSTYSLADVEQATNSTVLSTGVTELDDSQYYIPEYPPVRSKEVL 1244

Query: 175  EEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLK 234
             E G+HY+EDGNFWMEV GL D D    D+     + V+ N KV+FS  PI         
Sbjct: 1245 VEAGVHYFEDGNFWMEVPGLLDFD---DDDCSYPPITVRKNPKVRFSSGPI--------- 1292

Query: 235  PVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVD 294
                                                     +VYSTFS+N+YDRRNEDVD
Sbjct: 1293 -----------------------------------------HVYSTFSVNDYDRRNEDVD 1311

Query: 295  PVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAG 354
            PVAASAEYELEKRVEK+ +  VELMKG EGLGLSIIGMGVGADAGLEKLGIFVKTIT+ G
Sbjct: 1312 PVAASAEYELEKRVEKMHVFPVELMKGPEGLGLSIIGMGVGADAGLEKLGIFVKTITDNG 1371

Query: 355  AAARDGRIQGAEGL----GLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRG 410
            AAARDGRIQ  + +    G S++G                  +T+A AA+          
Sbjct: 1372 AAARDGRIQVNDQIIEVDGKSLVG------------------VTQAYAAS---------- 1403

Query: 411  PKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELED 468
               VL++     +++    RD E   +AQ+ +L+L     +E R + + E  L+   D
Sbjct: 1404 ---VLRNTSGLVKFQIGRERDPENSEVAQLIRLSLQADREKEERLKRQQEEYLRRTLD 1458

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865152|ref|XP_001971287.1| GG14511 [Drosophila erecta] gi|190653070|gb|EDV50313.1| GG14511 [Drosophila erecta]

 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 139/358 (38%), Positives = 180/358 (50%), Gaps = 91/358 (25%)

Query: 118  LNFGDPLETGIISSV-GSMDELDRVSSSRDSVTLQNETEEEDENTF--TEFVPEPRVEIF 174
            LN    ++  IISS   S   L     + +S  L     E D++ +   E+ P    E+ 
Sbjct: 1460 LNQTTTIDDSIISSKHNSTYSLADAEQATNSTVLSTGVTELDDSQYYIPEYPPVRSKEVL 1519

Query: 175  EEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLK 234
             E G+HY+EDGNFWMEV GL D D    D+     + V+ N KV+FS  PI         
Sbjct: 1520 VEAGVHYFEDGNFWMEVPGLLDFD---DDDCSYPPITVRKNPKVRFSSGPI--------- 1567

Query: 235  PVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVD 294
                                                     +VYSTFS+N+YDRRNEDVD
Sbjct: 1568 -----------------------------------------HVYSTFSVNDYDRRNEDVD 1586

Query: 295  PVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAG 354
            PVAASAEYELEKRVEK+ +  VELMKG EGLGLSIIGMGVGADAGLEKLGIFVKTIT+ G
Sbjct: 1587 PVAASAEYELEKRVEKMHVFPVELMKGPEGLGLSIIGMGVGADAGLEKLGIFVKTITDNG 1646

Query: 355  AAARDGRIQGAEGL----GLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRG 410
            AAARDGRIQ  + +    G S++G                  +T+A AA+          
Sbjct: 1647 AAARDGRIQVNDQIIEVDGKSLVG------------------VTQAYAAS---------- 1678

Query: 411  PKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELED 468
               VL++     +++    RD E   +AQ+ +L+L     +E R + + E  L+   D
Sbjct: 1679 ---VLRNTSGLVKFQIGRERDPENSEVAQLIRLSLQADREKEERLKRQQEEYLRRTLD 1733

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195439976|ref|XP_002067835.1| GK12507 [Drosophila willistoni] gi|194163920|gb|EDW78821.1| GK12507 [Drosophila willistoni]

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/358 (38%), Positives = 180/358 (50%), Gaps = 91/358 (25%)

Query: 118  LNFGDPLETGIISSV-GSMDELDRVSSSRDSVTLQNETEEEDENTF--TEFVPEPRVEIF 174
            LN    ++  IISS   S   L     + +S  L     E D++ +   E+ P    E+ 
Sbjct: 1207 LNQTTTIDDSIISSKHNSTYSLADAEQATNSTVLSTGLTELDDSQYYIPEYPPVRSKEVL 1266

Query: 175  EEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLK 234
             E G+HY+EDGNFWMEV GL D D    D+     + V+ N KV+FS  PI         
Sbjct: 1267 VEAGVHYFEDGNFWMEVPGLLDFD---DDDCSYPPITVRKNPKVRFSSGPI--------- 1314

Query: 235  PVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVD 294
                                                     +VYSTFS+N+YDRRNEDVD
Sbjct: 1315 -----------------------------------------HVYSTFSVNDYDRRNEDVD 1333

Query: 295  PVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAG 354
            PVAASAEYELEKRVEK+ +  VELMKG EGLGLSIIGMGVGADAGLEKLGIFVKTIT+ G
Sbjct: 1334 PVAASAEYELEKRVEKMHVFPVELMKGPEGLGLSIIGMGVGADAGLEKLGIFVKTITDNG 1393

Query: 355  AAARDGRIQGAEGL----GLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRG 410
            AAARDGRIQ  + +    G S++G                  +T+A AA+          
Sbjct: 1394 AAARDGRIQVNDQIIEVDGKSLVG------------------VTQAYAAS---------- 1425

Query: 411  PKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELED 468
               VL++     +++    RD E   +AQ+ +L+L     +E R + + E  L+   D
Sbjct: 1426 ---VLRNTSGLVKFQIGRERDPENSEVAQLIRLSLQADREKEERLKRQQEEYLRRTLD 1480

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386770403|ref|NP_001246578.1| spinophilin, isoform J [Drosophila melanogaster] gi|383291697|gb|AFH04249.1| spinophilin, isoform J [Drosophila melanogaster]

 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 139/358 (38%), Positives = 179/358 (50%), Gaps = 91/358 (25%)

Query: 118  LNFGDPLETGIISSV-GSMDELDRVSSSRDSVTLQNETEEEDENTF--TEFVPEPRVEIF 174
            LN    ++  IISS   S   L     +  S  L     E D++ +   E+ P    E+ 
Sbjct: 1114 LNQTTTIDDSIISSKHNSTYSLADAEQATSSTVLSTGVTELDDSQYYIPEYPPVRSKEVL 1173

Query: 175  EEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLK 234
             E G+HY+EDGNFWMEV GL D D    D+     + V+ N KV+FS  PI         
Sbjct: 1174 VEAGVHYFEDGNFWMEVPGLLDFD---DDDCSYPPITVRKNPKVRFSSGPI--------- 1221

Query: 235  PVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVD 294
                                                     +VYSTFS+N+YDRRNEDVD
Sbjct: 1222 -----------------------------------------HVYSTFSVNDYDRRNEDVD 1240

Query: 295  PVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAG 354
            PVAASAEYELEKRVEK+ +  VELMKG EGLGLSIIGMGVGADAGLEKLGIFVKTIT+ G
Sbjct: 1241 PVAASAEYELEKRVEKMHVFPVELMKGPEGLGLSIIGMGVGADAGLEKLGIFVKTITDNG 1300

Query: 355  AAARDGRIQGAEGL----GLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRG 410
            AAARDGRIQ  + +    G S++G                  +T+A AA+          
Sbjct: 1301 AAARDGRIQVNDQIIEVDGKSLVG------------------VTQAYAAS---------- 1332

Query: 411  PKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELED 468
               VL++     +++    RD E   +AQ+ +L+L     +E R + + E  L+   D
Sbjct: 1333 ---VLRNTSGLVKFQIGRERDPENSEVAQLIRLSLQADREKEERLKRQQEEYLRRTLD 1387

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	612
FB|FBgn0010905	2145	Spn "Spinophilin" [Drosophila	0.163	0.046	0.769	4.4e-42
UNIPROTKB|F6R8E7	1373	PPP1R9A "Uncharacterized prote	0.161	0.072	0.699	4.9e-31
RGD|632280	1095	Ppp1r9a "protein phosphatase 1	0.161	0.090	0.699	9.4e-31
UNIPROTKB|E1C9E1	1120	E1C9E1 "Uncharacterized protei	0.161	0.088	0.689	1.8e-30
UNIPROTKB|Q9ULJ8	1098	PPP1R9A "Neurabin-1" [Homo sap	0.161	0.090	0.689	2.2e-30
FB|FBgn0036519	276	CG7650 [Drosophila melanogaste	0.171	0.380	0.392	1.2e-29
UNIPROTKB|Q96SB3	815	PPP1R9B "Neurabin-2" [Homo sap	0.161	0.121	0.699	2.4e-28
MGI|MGI:2387581	817	Ppp1r9b "protein phosphatase 1	0.161	0.121	0.699	2.4e-28
RGD|632281	817	Ppp1r9b "protein phosphatase 1	0.161	0.121	0.699	2.4e-28
UNIPROTKB|F1RT57	818	LOC100516875 "Uncharacterized	0.161	0.121	0.699	2.4e-28

FB|FBgn0010905 Spn "Spinophilin" [Drosophila melanogaster (taxid:7227)]

 Score = 387 (141.3 bits), Expect = 4.4e-42, Sum P(2) = 4.4e-42
 Identities = 80/104 (76%), Positives = 91/104 (87%)

Query:   276 YVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVG 335
             +VYSTFS+N+YDRRNEDVDPVAASAEYELEKRVEK+ +  VELMKG EGLGLSIIGMGVG
Sbjct:  1233 HVYSTFSVNDYDRRNEDVDPVAASAEYELEKRVEKMHVFPVELMKGPEGLGLSIIGMGVG 1292

Query:   336 ADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
             ADAGLEKLGIFVKTIT+ GAAARDGRIQ  + +    G S++G+
Sbjct:  1293 ADAGLEKLGIFVKTITDNGAAARDGRIQVNDQIIEVDGKSLVGV 1336

GO:0008157 "protein phosphatase 1 binding" evidence=ISS

GO:0042048 "olfactory behavior" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

UNIPROTKB|F6R8E7 PPP1R9A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 4.9e-31, Sum P(3) = 4.9e-31
 Identities = 72/103 (69%), Positives = 86/103 (83%)

Query:   277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
             V+ST+S  +YDRRN++VDPVAASAEYELEKRVEKL L  VEL K  +GLG+SIIGMGVGA
Sbjct:   466 VFSTYSNEDYDRRNDEVDPVAASAEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGA 525

Query:   337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
             DAGLEKLGIFVKT+TE GAA RDGRIQ  + +    G+S++G+
Sbjct:   526 DAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV 568

GO:0043197 "dendritic spine" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA

RGD|632280 Ppp1r9a "protein phosphatase 1, regulatory subunit 9A" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 9.4e-31, Sum P(2) = 9.4e-31
 Identities = 72/103 (69%), Positives = 86/103 (83%)

Query:   277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
             V++T+S  +YDRRN+DVDPVAASAEYELEKRVEKL L  VEL K  +GLG+SIIGMGVGA
Sbjct:   467 VFNTYSNEDYDRRNDDVDPVAASAEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGA 526

Query:   337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
             DAGLEKLGIFVKT+TE GAA RDGRIQ  + +    G+S++G+
Sbjct:   527 DAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV 569

GO:0003779 "actin binding" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IDA

GO:0007015 "actin filament organization" evidence=IEA;ISO

GO:0019722 "calcium-mediated signaling" evidence=IEA;ISO

GO:0030054 "cell junction" evidence=IEA

GO:0030175 "filopodium" evidence=IEA;ISO

GO:0030426 "growth cone" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA;ISO

GO:0031175 "neuron projection development" evidence=IDA

GO:0043197 "dendritic spine" evidence=IEA;ISO

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|E1C9E1 E1C9E1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 349 (127.9 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
 Identities = 71/103 (68%), Positives = 86/103 (83%)

Query:   277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
             V++T+S  +YDRRN++VDPVAASAEYELEKRVEKL L  VEL K  +GLG+SIIGMGVGA
Sbjct:   488 VFNTYSNEDYDRRNDEVDPVAASAEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGA 547

Query:   337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
             DAGLEKLGIFVKT+TE GAA RDGRIQ  + +    G+S++G+
Sbjct:   548 DAGLEKLGIFVKTVTEGGAAERDGRIQVNDQIVEVDGISLVGV 590

GO:0007015 "actin filament organization" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

UNIPROTKB|Q9ULJ8 PPP1R9A "Neurabin-1" [Homo sapiens (taxid:9606)]

 Score = 349 (127.9 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
 Identities = 71/103 (68%), Positives = 86/103 (83%)

Query:   277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
             V++T+S  +YDRRN++VDPVAASAEYELEKRVEKL L  VEL K  +GLG+SIIGMGVGA
Sbjct:   466 VFNTYSNEDYDRRNDEVDPVAASAEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGA 525

Query:   337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
             DAGLEKLGIFVKT+TE GAA RDGRIQ  + +    G+S++G+
Sbjct:   526 DAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGV 568

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

FB|FBgn0036519 CG7650 [Drosophila melanogaster (taxid:7227)]

 Score = 223 (83.6 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
 Identities = 42/107 (39%), Positives = 65/107 (60%)

Query:   488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT 547
             FL+ ++ E +H T+I H+    L AC  LN  L  L+  + ++KF  +     G   S  
Sbjct:   165 FLACVEQENKHTTIIIHIYERQLAACATLNKCLDSLASDYPSIKFAKICSSVAG--MSRD 222

Query:   548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
             F+T GLPA+L Y+   V+GNFVRL ++L + +F  DVE+FL+E G++
Sbjct:   223 FRTKGLPALLVYKAQAVIGNFVRLTDDLSDDFFASDVESFLIEHGII 269

GO:0007602 "phototransduction" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q96SB3 PPP1R9B "Neurabin-2" [Homo sapiens (taxid:9606)]

 Score = 345 (126.5 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 72/103 (69%), Positives = 84/103 (81%)

Query:   277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
             V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct:   456 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 515

Query:   337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
             D GLEKLGIFVKT+TE GAA RDGRIQ  + L    G S++G+
Sbjct:   516 DMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 558

GO:0003779 "actin binding" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005912 "adherens junction" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=TAS

GO:0042127 "regulation of cell proliferation" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=IDA

GO:0004864 "protein phosphatase inhibitor activity" evidence=NAS

GO:0000164 "protein phosphatase type 1 complex" evidence=TAS

GO:0008157 "protein phosphatase 1 binding" evidence=NAS

GO:0007096 "regulation of exit from mitosis" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0005654 "nucleoplasm" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0016477 "cell migration" evidence=IMP

GO:0030175 "filopodium" evidence=IDA

GO:0071315 "cellular response to morphine" evidence=ISS

GO:2000474 "regulation of opioid receptor signaling pathway" evidence=ISS

GO:0032587 "ruffle membrane" evidence=IDA

GO:0030027 "lamellipodium" evidence=IDA

GO:0046847 "filopodium assembly" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:2387581 Ppp1r9b "protein phosphatase 1, regulatory subunit 9B" [Mus musculus (taxid:10090)]

 Score = 345 (126.5 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 72/103 (69%), Positives = 84/103 (81%)

Query:   277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
             V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct:   458 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 517

Query:   337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
             D GLEKLGIFVKT+TE GAA RDGRIQ  + L    G S++G+
Sbjct:   518 DMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 560

GO:0001932 "regulation of protein phosphorylation" evidence=IMP

GO:0003779 "actin binding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0007015 "actin filament organization" evidence=IPI

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016358 "dendrite development" evidence=IMP

GO:0016477 "cell migration" evidence=ISO

GO:0019722 "calcium-mediated signaling" evidence=IMP

GO:0030027 "lamellipodium" evidence=ISO

GO:0030036 "actin cytoskeleton organization" evidence=TAS

GO:0030054 "cell junction" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030175 "filopodium" evidence=ISO;IDA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0032587 "ruffle membrane" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0046847 "filopodium assembly" evidence=ISO

GO:0071315 "cellular response to morphine" evidence=IMP

GO:2000474 "regulation of opioid receptor signaling pathway" evidence=IMP

RGD|632281 Ppp1r9b "protein phosphatase 1, regulatory subunit 9B" [Rattus norvegicus (taxid:10116)]

 Score = 345 (126.5 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 72/103 (69%), Positives = 84/103 (81%)

Query:   277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
             V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct:   458 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 517

Query:   337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
             D GLEKLGIFVKT+TE GAA RDGRIQ  + L    G S++G+
Sbjct:   518 DMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 560

GO:0001932 "regulation of protein phosphorylation" evidence=IEA;ISO

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0005912 "adherens junction" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA;ISO

GO:0016358 "dendrite development" evidence=IEA;ISO

GO:0016477 "cell migration" evidence=ISO;ISS

GO:0019722 "calcium-mediated signaling" evidence=IEA;ISO

GO:0030027 "lamellipodium" evidence=ISO;ISS

GO:0030175 "filopodium" evidence=ISO;ISS

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030864 "cortical actin cytoskeleton" evidence=IEA;ISO

GO:0032587 "ruffle membrane" evidence=ISO;ISS

GO:0043197 "dendritic spine" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0046847 "filopodium assembly" evidence=ISO;ISS

GO:0071315 "cellular response to morphine" evidence=ISO;ISS

GO:2000474 "regulation of opioid receptor signaling pathway" evidence=ISO;ISS

UNIPROTKB|F1RT57 LOC100516875 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 345 (126.5 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 72/103 (69%), Positives = 84/103 (81%)

Query:   277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
             V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct:   459 VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 518

Query:   337 DAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLSIIGM 375
             D GLEKLGIFVKT+TE GAA RDGRIQ  + L    G S++G+
Sbjct:   519 DMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGV 561

GO:2000474 "regulation of opioid receptor signaling pathway" evidence=IEA

GO:0071315 "cellular response to morphine" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0019722 "calcium-mediated signaling" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	612
cd02987	175	cd02987, Phd_like_Phd, Phosducin (Phd)-like family	2e-34
pfam02114	245	pfam02114, Phosducin, Phosducin	7e-28
cd02957	113	cd02957, Phd_like, Phosducin (Phd)-like family; co	6e-23
cd02988	192	cd02988, Phd_like_VIAF, Phosducin (Phd)-like famil	2e-18
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	6e-06
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	2e-05
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	7e-05
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	7e-05
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	1e-04
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	0.001
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	0.002
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	0.003

>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

 Score =  128 bits (323), Expect = 2e-34
 Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 53/202 (26%)

Query: 410 GPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDD 469
           GPKGV+ DW +FKQ                                  E E E  + ++D
Sbjct: 8   GPKGVINDWRKFKQ--------------------------------LKESEQEDDDDDED 35

Query: 470 --GFLLEYQKEKMKQMYDRL-----------------FLSEIDSEPRHITVIAHLSSPSL 510
              FL +Y++++M++M+ +L                 FL  ID E +  TV+ H+  P +
Sbjct: 36  KEEFLQQYREQRMQEMHAKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGI 95

Query: 511 PACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVR 570
           P C ALNSSL  L+  +  VKF  +     G   S  F T  LPA+L Y+GGE++GNFVR
Sbjct: 96  PGCAALNSSLLCLAAEYPAVKFCKIRASATG--ASDEFDTDALPALLVYKGGELIGNFVR 153

Query: 571 LGEELGEGYFVEDVEAFLVEAG 592
           + E+LGE +  ED+E+FLVE G
Sbjct: 154 VTEDLGEDFDAEDLESFLVEYG 175

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 175

>gnl|CDD|202114 pfam02114, Phosducin, Phosducin

 Score =  112 bits (280), Expect = 7e-28
 Identities = 61/239 (25%), Positives = 108/239 (45%), Gaps = 42/239 (17%)

Query: 405 IQVRRGPKGVLKDWEQFK-QYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAEL 463
                GPKGV+ DW +FK + E         + +  +++++       ++R + + +   
Sbjct: 16  QASHTGPKGVINDWRKFKLESEDSDSVAHSKKEI--LRQMSS-----PQSRDDKDSKERF 68

Query: 464 -------------KELEDDGFLLEYQKEKMKQMYDRL-----------------FLSEID 493
                        K+ ED+  L +Y+++ M+ M+ +L                 FL  I+
Sbjct: 69  SRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIE 128

Query: 494 SEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGL 553
            E +  T++ H+    +  C ALNSSL  L+  +  VKF  +     G      F +  L
Sbjct: 129 KEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTGA--GDRFSSDVL 186

Query: 554 PAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTVDDDSD 612
           P +L Y+GGE++ NF+ + E+L E +F  DVE+FL E GLL    +   +    + + D
Sbjct: 187 PTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKEM--HVLEQTNMEED 243

Length = 245

>gnl|CDD|239255 cd02957, Phd_like, Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

 Score = 93.8 bits (234), Expect = 6e-23
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%)

Query: 479 KMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG 538
           +++++  + FL E+    +   V+ H   P  P C+ L+S L EL+  +   KFV +   
Sbjct: 5   EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKIN-- 62

Query: 539 CVGDHFSAT-FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV 589
                F         LP +L Y+ GE++ N V   E  G+ +  ED+E FL 
Sbjct: 63  -AEKAFLVNYLDIKVLPTLLVYKNGELIDNIVGFEELGGDDFTTEDLEKFLA 113

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Also included in this family is a PhLP characterized as a viral inhibitor of apoptosis (IAP)-associated factor, named VIAF, that functions in caspase activation during apoptosis. Length = 113

>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 21/177 (11%)

Query: 432 KELQRLAQIQKLALTCQSSEEARKEAEMEAELKELEDDGFLLEYQKEKMKQM-------- 483
           KE +  A    +    +++ E +   E++ EL E EDD FL EY+++++ +M        
Sbjct: 21  KEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEKSK 80

Query: 484 YDRL-------FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVP 536
           +  +       ++ E+    +   V+ HL    +P CR LN  L+EL+R   + KFV + 
Sbjct: 81  FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKII 140

Query: 537 LG-CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG 592
              C+ +     +    LP +L YR G++V  F+ L E  G    +ED+E  LV+ G
Sbjct: 141 STQCIPN-----YPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain. Length = 192

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 16/41 (39%), Positives = 26/41 (63%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
          R  L+V D+I+EV+G S+ G+T E A  +L+N+   V   +
Sbjct: 41 RGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
             LQ  D+I+ ++G+ L  ++ + A   L+ + G V   I
Sbjct: 39 AGGLQEGDRILSINGQDLENLSHDEAVLALKGSGGEVTLTI 79

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
          +  L+V D I+EV+G S+ G+T   A  +L+   G V   + R  
Sbjct: 41 KAGLRVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT 547
           F   I S      V+    +P    C+A+   L EL+  +  VKFV V +    +  +  
Sbjct: 3   FEELIKSAK---PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE-LAEE 58

Query: 548 FKTSGLPAMLAYRGGEVVGNFVR 570
           +    +P  L ++ G+ V   V 
Sbjct: 59  YGVRSIPTFLFFKNGKEVDRVVG 81

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
          V D+I+EV+G S+ G+T E A  +L+N+   V   +
Sbjct: 46 VGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
          V D I+EV+G S+ G+T   A  +L+   G V   + R  
Sbjct: 46 VGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           VEL KG  GLG S++G         E  G+ V ++     AA+ G
Sbjct: 5   VELEKGGGGLGFSLVGGKD------EGGGVVVSSVVPGSPAAKAG 43

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 9/36 (25%), Positives = 19/36 (52%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
            D+I+ ++G+ L  ++ + A   L+ + G V   I
Sbjct: 44 EGDRILSINGQDLENLSHDEAVLALKGSGGEVTLTI 79

PDZ domains are found in diverse signaling proteins. Length = 80

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	612
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	100.0
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	100.0
KOG3171|consensus	273		100.0
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.97
KOG3170|consensus	240		99.94
KOG1672|consensus	211		99.92
KOG3209|consensus	984		99.91
KOG3209|consensus	984		99.85
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.8
KOG3580|consensus	1027		99.8
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.79
KOG0910|consensus	150		99.74
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.7
KOG0907|consensus	106		99.67
PHA02278	103	thioredoxin-like protein	99.63
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.61
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.56
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.56
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.55
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.53
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.52
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.51
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.5
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.5
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.49
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.48
PRK09381	109	trxA thioredoxin; Provisional	99.48
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.48
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.47
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.47
PTZ00051	98	thioredoxin; Provisional	99.45
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.43
PTZ00062	204	glutaredoxin; Provisional	99.43
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.4
PRK10996	139	thioredoxin 2; Provisional	99.4
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.4
KOG0908|consensus	288		99.39
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.36
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.34
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.33
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.32
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.32
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.32
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.31
KOG3550|consensus	207		99.31
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.3
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.22
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.22
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.2
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.2
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.18
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.17
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.17
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.15
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.12
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.12
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.11
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.09
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.07
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.05
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.04
PHA02125	75	thioredoxin-like protein	99.01
KOG1892|consensus	1629		98.99
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.97
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.95
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.94
PLN02309	457	5'-adenylylsulfate reductase	98.93
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.88
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.87
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.86
PTZ00102	477	disulphide isomerase; Provisional	98.81
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.78
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	98.76
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.75
PTZ00102	477	disulphide isomerase; Provisional	98.72
KOG0190|consensus	493		98.71
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.68
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.64
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.63
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.62
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.61
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.6
KOG0190|consensus	493		98.6
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.59
KOG3605|consensus	829		98.57
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.56
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.53
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.53
KOG3580|consensus	1027		98.52
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.49
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.46
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.43
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	98.38
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.34
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.33
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	98.29
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.27
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	98.26
KOG4277|consensus	468		98.25
PRK13728	181	conjugal transfer protein TrbB; Provisional	98.23
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	98.15
KOG3553|consensus	124		98.15
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.13
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.1
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.08
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.06
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.0
KOG0914|consensus	265		97.99
KOG3550|consensus	207		97.96
KOG0911|consensus	227		97.94
KOG3571|consensus	626		97.93
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	97.89
KOG1945|consensus	377		97.87
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.83
KOG0191|consensus	383		97.77
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	97.74
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.73
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.73
KOG0912|consensus	375		97.72
KOG3651|consensus	429		97.67
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.65
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.64
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	97.62
KOG3551|consensus	506		97.58
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	97.52
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.51
PRK11200	85	grxA glutaredoxin 1; Provisional	97.47
KOG3549|consensus	505		97.45
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.43
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	97.4
PTZ00056	199	glutathione peroxidase; Provisional	97.4
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.39
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	97.33
KOG0191|consensus	383		97.32
KOG3605|consensus	829		97.31
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	97.28
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	97.26
KOG0609|consensus	542		97.23
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	97.18
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	97.18
PLN02412	167	probable glutathione peroxidase	97.17
PRK10779	449	zinc metallopeptidase RseP; Provisional	97.17
smart00594	122	UAS UAS domain.	97.11
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.08
KOG3551|consensus	506		97.05
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	96.99
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	96.91
PRK10942	473	serine endoprotease; Provisional	96.89
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	96.89
PRK10139	455	serine endoprotease; Provisional	96.88
KOG3606|consensus	358		96.85
PF13728	215	TraF: F plasmid transfer operon protein	96.85
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	96.8
KOG3549|consensus	505		96.8
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	96.76
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	96.75
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	96.74
KOG4371|consensus	1332		96.67
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	96.61
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.59
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	96.5
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	96.5
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	96.46
PHA03050	108	glutaredoxin; Provisional	96.43
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	96.39
KOG1892|consensus	1629		96.37
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	96.37
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	96.32
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.28
PTZ00256	183	glutathione peroxidase; Provisional	96.16
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	96.15
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	96.04
KOG3552|consensus	1298		95.91
KOG3425|consensus	128		95.83
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.82
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	95.8
KOG3651|consensus	429		95.77
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	95.73
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	95.67
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	95.67
KOG3414|consensus	142		95.66
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	95.61
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	95.56
KOG3571|consensus	626		95.55
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	95.51
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	95.48
KOG1731|consensus	606		95.43
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.42
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	95.42
KOG3552|consensus	1298		95.41
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	95.4
KOG2501|consensus	157		95.26
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.25
KOG3542|consensus	1283		95.19
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	95.11
KOG3553|consensus	124		94.73
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	94.7
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	94.65
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	94.56
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	94.43
KOG3938|consensus	334		94.4
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	94.39
PRK10329	81	glutaredoxin-like protein; Provisional	94.17
PRK15000	200	peroxidase; Provisional	94.1
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	94.08
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	94.06
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	93.72
KOG4371|consensus	1332		93.65
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	93.59
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	93.57
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	93.48
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	93.47
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	93.42
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	93.4
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	92.98
KOG0609|consensus	542		92.98
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	92.95
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	92.93
KOG3606|consensus	358		92.86
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	92.75
KOG0913|consensus	248		92.32
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	92.25
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	92.16
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	92.02
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	91.91
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	91.85
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	91.61
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	91.45
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	91.37
KOG1945|consensus	377		91.24
PRK10139	455	serine endoprotease; Provisional	91.13
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	91.07
PTZ00253	199	tryparedoxin peroxidase; Provisional	91.04
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	90.86
PLN00049	389	carboxyl-terminal processing protease; Provisional	90.73
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	90.54
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	90.36
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	90.31
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	90.18
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	90.17
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	89.92
PLN00049	389	carboxyl-terminal processing protease; Provisional	89.79
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	89.69
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	89.56
PRK10638	83	glutaredoxin 3; Provisional	89.55
PTZ00137	261	2-Cys peroxiredoxin; Provisional	89.51
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	89.29
PRK13190	202	putative peroxiredoxin; Provisional	89.23
PRK13599	215	putative peroxiredoxin; Provisional	89.22
KOG1752|consensus	104		89.12
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	89.1
PRK13191	215	putative peroxiredoxin; Provisional	88.92
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	88.78
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	88.76
PRK10606	183	btuE putative glutathione peroxidase; Provisional	88.74
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	88.41
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	88.41
PF12812	78	PDZ_1: PDZ-like domain	88.27
COG2143	182	Thioredoxin-related protein [Posttranslational mod	88.22
PRK10824	115	glutaredoxin-4; Provisional	88.2
KOG2603|consensus	331		87.78
PRK11186	667	carboxy-terminal protease; Provisional	87.56
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	87.37
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	87.31
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	87.03
PRK13189	222	peroxiredoxin; Provisional	86.87
PRK11186	667	carboxy-terminal protease; Provisional	86.41
PRK09681	276	putative type II secretion protein GspC; Provision	86.25
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	84.49
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	84.12
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	83.23
KOG3938|consensus	334		82.89
KOG3542|consensus	1283		82.87
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	82.18
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	80.79

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=100.00  E-value=9.3e-42  Score=346.28  Aligned_cols=194  Identities=36%  Similarity=0.659  Sum_probs=141.1

Q ss_pred             eeccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccChHHHHH-----------------HHHHHHHhhhccc
Q psy12938        406 QVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARK-----------------EAEMEAELKELED  468 (612)
Q Consensus       406 ~~~~~~~gv~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----------------~~e~~~~l~el~D  468 (612)
                      ..+|||||||+|||+||+++.+++..+..++.+.+++++++++++.++..                 .++.+..-++++|
T Consensus        20 ~~nTGpKGVI~D~r~fk~le~~~~~~~~~~~~~li~k~s~t~~s~l~e~~~~~~~k~~~e~~~~~~~~~e~e~~~~d~eD   99 (265)
T PF02114_consen   20 SANTGPKGVIADWRRFKQLESEQREEQARERKRLIKKLSSTCRSHLDEEEEKQDQKDSEEKLSEKMSLDELEELEDDEED   99 (265)
T ss_dssp             --SSHHHHHHHHHHHHH-HHHTT-SSSTTS-SS-S-SS-----------SSSS--GGGSS----SS-HHHHHHHCC----
T ss_pred             CCCCCCcchHHHHHHHHHHHhhhHHhhHHHHHHHHhhccccccccccccccccchhhhhhhhcccccHhHHhhhhccccc
Confidence            46999999999999999999888777777677778888887765432111                 1122111124567


Q ss_pred             hhHHHHHHHHHHHHHHHH-----------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCce
Q psy12938        469 DGFLLEYQKEKMKQMYDR-----------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVK  531 (612)
Q Consensus       469 d~~l~~yr~~R~~el~~~-----------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vk  531 (612)
                      ++||++||++||+||+.+                 .|+++|+++.++++||||||.+.++.|++|+.+|..||++||.||
T Consensus       100 eefL~~yR~qRm~El~~~~~~~~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vK  179 (265)
T PF02114_consen  100 EEFLEQYREQRMQELKQKLQKGPRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVK  179 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceE
Confidence            899999999999999752                 489999999899999999999999999999999999999999999


Q ss_pred             EEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCCCCCC
Q psy12938        532 FVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPG  601 (612)
Q Consensus       532 F~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~~~~~  601 (612)
                      ||||.++..+  ++.+|++.+|||||+||+|+++++|||+.+++|++|++++||+||.++|+|+++.+..
T Consensus       180 FvkI~a~~~~--~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k~~~~  247 (265)
T PF02114_consen  180 FVKIRASKCP--ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEKDSRL  247 (265)
T ss_dssp             EEEEEECGCC--TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS------
T ss_pred             EEEEehhccC--cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCcccch
Confidence            9999998764  7799999999999999999999999999999999999999999999999999999644

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=100.00  E-value=9.1e-36  Score=286.43  Aligned_cols=152  Identities=44%  Similarity=0.798  Sum_probs=133.5

Q ss_pred             eccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccChHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHH
Q psy12938        407 VRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAELKELED--DGFLLEYQKEKMKQMY  484 (612)
Q Consensus       407 ~~~~~~gv~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~e~~~~l~el~D--d~~l~~yr~~R~~el~  484 (612)
                      .+|||||||+|||+|+++                          .      +...+|++++|  ++||++||++||+||+
T Consensus         5 ~~tg~kgv~~d~~~~~~~--------------------------~------~~~~~~d~~~~~~e~~l~~~R~~R~~el~   52 (175)
T cd02987           5 TNTGPKGVINDWRKFKQL--------------------------K------ESEQEDDDDDEDKEEFLQQYREQRMQEMH   52 (175)
T ss_pred             CCCCCchhHHHHHHHHhh--------------------------h------chhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            589999999999999986                          0      01122333322  5799999999999997


Q ss_pred             HH-----------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhh
Q psy12938        485 DR-----------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT  547 (612)
Q Consensus       485 ~~-----------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~  547 (612)
                      ++                 +|.++|+++++.++||||||++||++|+.|+++|+.||++|+.++|++|+++..  .++.+
T Consensus        53 ~~~~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~  130 (175)
T cd02987          53 AKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDE  130 (175)
T ss_pred             HhccccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHh
Confidence            73                 578888876667799999999999999999999999999999999999999975  68899


Q ss_pred             CCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       548 ~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      |++.++|||++||+|+.+++++|+.+.+|.+|++++||++|.++|
T Consensus       131 f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~g  175 (175)
T cd02987         131 FDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEYG  175 (175)
T ss_pred             CCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999987

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG3171|consensus

Probab=100.00  E-value=1.6e-34  Score=272.68  Aligned_cols=203  Identities=33%  Similarity=0.559  Sum_probs=161.2

Q ss_pred             eeccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccChH-HHHHH----HHHHHHhhhccchhHHHHHHHHHH
Q psy12938        406 QVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSE-EARKE----AEMEAELKELEDDGFLLEYQKEKM  480 (612)
Q Consensus       406 ~~~~~~~gv~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~----~e~~~~l~el~Dd~~l~~yr~~R~  480 (612)
                      +++||+||||+||++|+...+..-....++.+++|....+.....+ |..+.    .|-...-++-+|+.||++||++||
T Consensus        45 s~ntg~kgvind~r~fk~q~r~~v~~~~~~li~q~s~~~~~~~Kd~kEkvsrkms~~E~~~m~~~~~de~~L~~yr~qrm  124 (273)
T KOG3171|consen   45 SSNTGPKGVINDWRAFKEQTRLAVESKNQKLIEQMSSPQSRNGKDSKEKVSRKMSIQEYELMHKEKEDENCLRKYRRQRM  124 (273)
T ss_pred             cccCCCCccchhHHHHhhhhhhhcChhHHHHHHHhcchhhccchhhHHHhhccccHHHHHHHhhhhchHHHHHHHHHHHH
Confidence            5699999999999999954433322223334455544322222222 22211    111222255678999999999999


Q ss_pred             HHHHHH-----------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhc
Q psy12938        481 KQMYDR-----------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDH  543 (612)
Q Consensus       481 ~el~~~-----------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~  543 (612)
                      ++|++.                 .|++.|+++.++++++||||.+....|..||.+|..||++||-||||||.++..  .
T Consensus       125 ~eMrq~l~~gp~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~--g  202 (273)
T KOG3171|consen  125 QEMRQKLSFGPRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNT--G  202 (273)
T ss_pred             HHHHHHhhcCCccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccc--c
Confidence            999874                 599999999899999999999999999999999999999999999999999987  5


Q ss_pred             hhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCCCCCCCC--CCCCCCC
Q psy12938        544 FSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGIL--RPTVDDD  610 (612)
Q Consensus       544 ~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~~~~~~~--~~~~~~~  610 (612)
                      ++.+|...+||||++||+|+++++||.+.+.+|++|++.+||.||.++|+++..+...+.  +..+|||
T Consensus       203 as~~F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gllpe~ev~vl~s~~~sEd~D  271 (273)
T KOG3171|consen  203 ASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLLPEREVHVLESTKESEDED  271 (273)
T ss_pred             chhhhcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCCcccceeeecccccccccc
Confidence            889999999999999999999999999999999999999999999999999998844433  4444444

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.97  E-value=4.6e-30  Score=250.07  Aligned_cols=132  Identities=34%  Similarity=0.583  Sum_probs=118.3

Q ss_pred             HHHHHHhhhccchhHHHHHHHHHHHHHHHH---------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHH
Q psy12938        457 AEMEAELKELEDDGFLLEYQKEKMKQMYDR---------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLA  521 (612)
Q Consensus       457 ~e~~~~l~el~Dd~~l~~yr~~R~~el~~~---------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~  521 (612)
                      +++++++++.+|++||++||++||+||+..               +|..+|+++++..+||||||++||++|+.|+++|.
T Consensus        46 ~el~~~~d~~~d~~~Le~yR~kRl~el~~~~~~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~  125 (192)
T cd02988          46 DELDEELDEEEDDRFLEEYRRKRLAEMKALAEKSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLS  125 (192)
T ss_pred             HHHHHhhcccccHHHHHHHHHHHHHHHHHhhhhCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHH
Confidence            345555555555669999999999999873               58889988777789999999999999999999999


Q ss_pred             HHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        522 ELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       522 ~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      .||++|+.+||++|+++.    ++.+|+++++|||++||||+.+++++|+..++|.+|++++||++|.++|
T Consensus       126 ~LA~k~~~vkFvkI~ad~----~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g  192 (192)
T cd02988         126 ELARKFPDTKFVKIISTQ----CIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG  192 (192)
T ss_pred             HHHHHCCCCEEEEEEhHH----hHhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence            999999999999999974    3589999999999999999999999999999999999999999999886

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG3170|consensus

Probab=99.94  E-value=2.7e-26  Score=215.18  Aligned_cols=124  Identities=28%  Similarity=0.499  Sum_probs=116.1

Q ss_pred             cchhHHHHHHHHHHHHHHHH---------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCce
Q psy12938        467 EDDGFLLEYQKEKMKQMYDR---------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVK  531 (612)
Q Consensus       467 ~Dd~~l~~yr~~R~~el~~~---------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vk  531 (612)
                      +|+.||++||.+||+||+..               +|+++|++++...|||||+|..+.+.|++++.||..||.+||.+|
T Consensus        65 dDerfLE~YR~kRl~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iK  144 (240)
T KOG3170|consen   65 DDERFLEMYRIKRLAEWRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIK  144 (240)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcce
Confidence            45669999999999999873               699999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938        532 FVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL  594 (612)
Q Consensus       532 F~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l  594 (612)
                      |+||.+..    ++++|+..+||||+||..|.+.++++|+..++|++.+.++||.+|.+.|++
T Consensus       145 FVki~at~----cIpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga~  203 (240)
T KOG3170|consen  145 FVKIPATT----CIPNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGAA  203 (240)
T ss_pred             EEeccccc----ccCCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcccc
Confidence            99998762    347999999999999999999999999999999999999999999999954

>KOG1672|consensus

Probab=99.92  E-value=2.6e-24  Score=201.78  Aligned_cols=128  Identities=19%  Similarity=0.392  Sum_probs=114.2

Q ss_pred             chhHHHHHHHHHHHHHHHH----------------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHh
Q psy12938        468 DDGFLLEYQKEKMKQMYDR----------------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSR  525 (612)
Q Consensus       468 Dd~~l~~yr~~R~~el~~~----------------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~  525 (612)
                      |+.-|+..|++||++|+..                      +|++.++   ++..||||||.+.+.+|++|+.+|+.||+
T Consensus        35 d~~dle~lr~qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~~---kS~kVVcHFY~~~f~RCKimDkhLe~LAk  111 (211)
T KOG1672|consen   35 DEDDLEVLREQRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEVK---KSEKVVCHFYRPEFFRCKIMDKHLEILAK  111 (211)
T ss_pred             CchhHHHhHHHHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhh---cCceEEEEEEcCCCcceehHHHHHHHHHH
Confidence            4444556699999999763                      3566655   35589999999999999999999999999


Q ss_pred             hcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc-CCCCHHHHHHHHHHCCcccCCCC
Q psy12938        526 SHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG-EGYFVEDVEAFLVEAGLLRAGGL  599 (612)
Q Consensus       526 ~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g-~~~~~~~lE~~L~~~g~l~~~~~  599 (612)
                      +|.++||+||+++..| +++.++.|+.|||+++|+||..+..+|||.+.|| ++|+++.||+.|.+.|+|...+.
T Consensus       112 ~h~eTrFikvnae~~P-Flv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi~~~~~  185 (211)
T KOG1672|consen  112 RHVETRFIKVNAEKAP-FLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSGVIDYTGE  185 (211)
T ss_pred             hcccceEEEEecccCc-eeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhccceecccc
Confidence            9999999999999888 9999999999999999999999999999999988 69999999999999999877663

>KOG3209|consensus

Probab=99.91  E-value=9.2e-24  Score=227.67  Aligned_cols=313  Identities=21%  Similarity=0.253  Sum_probs=185.8

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcC--CCeEEEEEeecCCCCchh--------------------------------
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDPVNSE--------------------------------   46 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~--~~~v~l~v~r~~~~~~~~--------------------------------   46 (612)
                      .||.|+++|+.++++++|.++|++|+.+  |..+.|+|.|--.+....                                
T Consensus       524 eGd~IVei~~rnvr~L~h~qvvdmlke~piG~r~~Llv~RGgp~s~~ktpk~~~r~~~~~s~~~s~sap~i~q~~Pfpp~  603 (984)
T KOG3209|consen  524 EGDLIVEINERNVRALTHTQVVDMLKECPIGSRVHLLVKRGGPPSPSKTPKAADRKENQGSNQMSSSAPLIPQKLPFPPT  603 (984)
T ss_pred             CCCeEEecccccccccchHHHHHHHHhccCCcceeEEEecCCCCCCCcCcchhhhccCCCCccccccccccCCCCCCCCc
Confidence            4899999999999999999999999987  458999998863211000                                


Q ss_pred             --------------------------------------------------------------------------------
Q psy12938         47 --------------------------------------------------------------------------------   46 (612)
Q Consensus        47 --------------------------------------------------------------------------------   46 (612)
                                                                                                      
T Consensus       604 ~rs~~pd~t~~~~qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ldV~L~rkesGFGFRiLGG~ep~qpi~iG~Iv~  683 (984)
T KOG3209|consen  604 SRSEEPDNTRNTLQRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELDVFLRRKESGFGFRILGGDEPGQPIYIGAIVP  683 (984)
T ss_pred             ccccCCcccccccccCCChHHHhhhcccchhccCCCCCccccCCccceeEEEEeeccccceEEecCCCCCCeeEEeeeee
Confidence                                                                                            


Q ss_pred             -hHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCCCCChHHHHHHhhhcccccccccCCCC
Q psy12938         47 -VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDPVNSEVAQLIRQSLQPCLTLLNFGDP  123 (612)
Q Consensus        47 -i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  123 (612)
                       .++-.+|||+.||+|++|+|+.|.|.||.+++.+|..+  .+.|.|+|.|...... .      .. .+   ..+.   
T Consensus       684 lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv~~~~-~------~r-sp---~~s~---  749 (984)
T KOG3209|consen  684 LGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKVRTGP-A------RR-SP---RNSA---  749 (984)
T ss_pred             cccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeeeeecc-c------cC-Cc---cccc---
Confidence             22334789999999999999999999999999999875  6899999987533100 0      00 00   0000   


Q ss_pred             CCcccccCCCCccccccccCCCCcccccCCCCccccCCcccc--cC-CCcccccc---cCccccccCCCccccccCCCCc
Q psy12938        124 LETGIISSVGSMDELDRVSSSRDSVTLQNETEEEDENTFTEF--VP-EPRVEIFE---EGGIHYYEDGNFWMEVEGLPDR  197 (612)
Q Consensus       124 ~~~~~~ss~~s~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~p-~~~~~~~~---~~g~~~~~~g~~~~e~~g~~~~  197 (612)
                           .++            ..+.+.........-+|.+-+.  .| ....++.+   +.+|..++.||+++++||.++.
T Consensus       750 -----~~~------------~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~  812 (984)
T KOG3209|consen  750 -----APS------------GPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDRILAVNGQSIL  812 (984)
T ss_pred             -----CCC------------CCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccceEEEecCeeee
Confidence                 000            0000000000000111111111  11 11111222   4688899999999999999987


Q ss_pred             cccccCCCCCCCCcccCCcccccccCcccccccCCCCcccccccCCCccccCCCCCCccccccccccCCCCCcccCCccc
Q psy12938        198 DLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYV  277 (612)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (612)
                      +.+   .++.-++...+...+++...|-.. . ....+....-..+..+...++++.-.++             ...+.+
T Consensus       813 ~ls---Hadiv~LIKdaGlsVtLtIip~ee-~-~~~~~~~sa~~~s~~t~~~~~~q~~glp-------------~~~~s~  874 (984)
T KOG3209|consen  813 NLS---HADIVSLIKDAGLSVTLTIIPPEE-A-GPPTSMTSAEKQSPFTQNGPYEQQYGLP-------------GPRPSV  874 (984)
T ss_pred             ccC---chhHHHHHHhcCceEEEEEcChhc-c-CCCCCCcchhhcCcccccCCHhHccCCC-------------CCCccc
Confidence            764   333334444445555554444330 0 0000000000000111111111110111             111111


Q ss_pred             cccccccccccCCCCCCccchhhHHHHhhhccceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhc
Q psy12938        278 YSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAA  357 (612)
Q Consensus       278 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~  357 (612)
                      +..+           .+|.+........+...+..+++|+|+||..|+||||.|   |+.   +.+++||-++.++|+|.
T Consensus       875 ~~~~-----------pqpdt~~~~~~~~r~~qn~~~~~VelErG~kGFGFSiRG---Gre---ynM~LfVLRlAeDGPA~  937 (984)
T KOG3209|consen  875 YEEH-----------PQPDTFQGLSINDRMSQNGDLYTVELERGAKGFGFSIRG---GRE---YNMDLFVLRLAEDGPAI  937 (984)
T ss_pred             cccC-----------CCCccccceeccccccccCCeeEEEeeccccccceEeec---ccc---cccceEEEEeccCCCcc
Confidence            1111           122221122222233457789999999999999999999   655   67899999999999999


Q ss_pred             ccCCccccc----CCceeeeeccccc
Q psy12938        358 RDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       358 ~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +|||+|+||    +||.+..||+|.+
T Consensus       938 rdGrm~VGDqi~eINGesTkgmtH~r  963 (984)
T KOG3209|consen  938 RDGRMRVGDQITEINGESTKGMTHDR  963 (984)
T ss_pred             ccCceeecceEEEecCcccCCCcHHH
Confidence            999999999    9999999999954

>KOG3209|consensus

Probab=99.85  E-value=2.3e-20  Score=201.62  Aligned_cols=98  Identities=20%  Similarity=0.400  Sum_probs=79.0

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcC--CCeEEEEEeecCCC----Cc---hh-------------------------
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDP----VN---SE-------------------------   46 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~--~~~v~l~v~r~~~~----~~---~~-------------------------   46 (612)
                      +||.|+.|||..+-+.||.+||++++.-  +..|.|++.|.-+-    ..   +.                         
T Consensus       392 ~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRgyelp~dp~dp~~sp~~~iv~~~P~~~~~~~gp~v~~~~s  471 (984)
T KOG3209|consen  392 TGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRGYELPFDPEDPVGSPRVAIVPSWPDSSTDKGGPMVTGRPS  471 (984)
T ss_pred             cCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecCccCCCCCcccCCCCccccccCCCCCCCCCCCCeeecCCC
Confidence            5999999999999999999999999987  77999999886210    00   00                         


Q ss_pred             -----------------------------hHH---------hhh----cccCCCCEEEEECCeecCCCCHHHHHHHHHhC
Q psy12938         47 -----------------------------VAQ---------LIR----QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT   84 (612)
Q Consensus        47 -----------------------------i~~---------i~~----G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~   84 (612)
                                                   ||+         +.+    -.|+.||.|++||++++.+++|.+++++|+.+
T Consensus       472 ss~~~a~~~~~~el~ti~i~kgpegfgftiADsPtgqrvK~ilDp~~c~gl~eGd~IVei~~rnvr~L~h~qvvdmlke~  551 (984)
T KOG3209|consen  472 SSTHLAQHDGPPELTTIKIVKGPEGFGFTIADSPTGQRVKQILDPQDCPGLSEGDLIVEINERNVRALTHTQVVDMLKEC  551 (984)
T ss_pred             CccccccCCCCcccEEEeeecCCCCCCceeccCCCCCceeeecCcccCCCCCCCCeEEecccccccccchHHHHHHHHhc
Confidence                                         111         111    06999999999999999999999999999985


Q ss_pred             --CCceEEEEeecCCC
Q psy12938         85 --SGLVRFLIGREKDP   98 (612)
Q Consensus        85 --~~~v~l~v~R~~~~   98 (612)
                        +..++|+|.|--.+
T Consensus       552 piG~r~~Llv~RGgp~  567 (984)
T KOG3209|consen  552 PIGSRVHLLVKRGGPP  567 (984)
T ss_pred             cCCcceeEEEecCCCC
Confidence              68899999996543

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.80  E-value=4.8e-19  Score=158.54  Aligned_cols=99  Identities=22%  Similarity=0.421  Sum_probs=90.8

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      +|.+.|.+   ..+|+|+||++||++|+.|.++|++||++|++++|++||++..+ .++++|.+..+||+++||+|+.++
T Consensus        14 ~~~~~i~~---~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-~l~~~~~v~~vPt~l~fk~G~~v~   89 (113)
T cd02989          14 EFFEIVKS---SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-FLVEKLNIKVLPTVILFKNGKTVD   89 (113)
T ss_pred             HHHHHHhC---CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-HHHHHCCCccCCEEEEEECCEEEE
Confidence            45555643   34899999999999999999999999999999999999999887 788999999999999999999999


Q ss_pred             EEEecccccc-CCCCHHHHHHHHH
Q psy12938        567 NFVRLGEELG-EGYFVEDVEAFLV  589 (612)
Q Consensus       567 ~~vg~~~~~g-~~~~~~~lE~~L~  589 (612)
                      +++|+.+.+| ++++.++||+||.
T Consensus        90 ~~~g~~~~~~~~~~~~~~~e~~~~  113 (113)
T cd02989          90 RIVGFEELGGKDDFSTETLEKRLA  113 (113)
T ss_pred             EEECccccCCCCCCCHHHHHHHhC
Confidence            9999999988 8999999999984

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>KOG3580|consensus

Probab=99.80  E-value=9.1e-19  Score=186.08  Aligned_cols=47  Identities=17%  Similarity=0.355  Sum_probs=44.5

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP   98 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~   98 (612)
                      +|.||.||.||.|||+..+||++.+|..+|..+.|++.|+|+|...+
T Consensus       235 dgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~lvVlRD~~q  281 (1027)
T KOG3580|consen  235 DGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDSQQ  281 (1027)
T ss_pred             cCCcccccEEEEECcEeeccccchhHHHHHHhccCceEEEEEecCCc
Confidence            57999999999999999999999999999999999999999998663

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.79  E-value=1.8e-19  Score=161.15  Aligned_cols=105  Identities=30%  Similarity=0.570  Sum_probs=95.0

Q ss_pred             HHHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938        482 QMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG  561 (612)
Q Consensus       482 el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~  561 (612)
                      ++..++|.+.|...+.+.+|||+||++||++|+.|.+.|+.||++|++++|++||++..  .++++|.+..+||+++|++
T Consensus         8 ~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i~~~Pt~~~f~~   85 (113)
T cd02957           8 EISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDIKVLPTLLVYKN   85 (113)
T ss_pred             EEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCCCcCCEEEEEEC
Confidence            34456677777765445799999999999999999999999999999999999999876  6889999999999999999


Q ss_pred             CEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938        562 GEVVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       562 G~~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      |+.+++++|..+..|++|+.+.||++|
T Consensus        86 G~~v~~~~G~~~~~~~~~~~~~l~~~l  112 (113)
T cd02957          86 GELIDNIVGFEELGGDDFTTEDLEKFL  112 (113)
T ss_pred             CEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence            999999999999999999999999998

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>KOG0910|consensus

Probab=99.74  E-value=5.1e-18  Score=155.33  Aligned_cols=98  Identities=19%  Similarity=0.342  Sum_probs=85.6

Q ss_pred             HHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECC
Q psy12938        484 YDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGG  562 (612)
Q Consensus       484 ~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G  562 (612)
                      ...+|.+.|.+  .+.+|+|.|||+||.+|++|.|.|++++.+|. .+||++||+|..+ +++.+|.|+.+||+++||||
T Consensus        49 s~~~~~~~Vi~--S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~-ela~~Y~I~avPtvlvfknG  125 (150)
T KOG0910|consen   49 SDSEFDDKVIN--SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP-ELAEDYEISAVPTVLVFKNG  125 (150)
T ss_pred             CHHHHHHHHHc--cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc-chHhhcceeeeeEEEEEECC
Confidence            33457677765  67799999999999999999999999999985 5999999999887 89999999999999999999


Q ss_pred             EEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        563 EVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       563 ~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +.+++|+|..+.       +.|+.++.++
T Consensus       126 e~~d~~vG~~~~-------~~l~~~i~k~  147 (150)
T KOG0910|consen  126 EKVDRFVGAVPK-------EQLRSLIKKF  147 (150)
T ss_pred             EEeeeecccCCH-------HHHHHHHHHH
Confidence            999999998666       6677776553

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.70  E-value=5.3e-17  Score=144.29  Aligned_cols=86  Identities=15%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      +|.+++.. ..+.+|||+|||+||++|+.|.|.|++||.+|++ ++|++||++..+ .++.+|.+.++||+++||+|+.+
T Consensus         4 ~~~~~i~~-~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-~la~~~~V~~iPTf~~fk~G~~v   81 (114)
T cd02954           4 AVDQAILS-EEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-DFNKMYELYDPPTVMFFFRNKHM   81 (114)
T ss_pred             HHHHHHhc-cCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-HHHHHcCCCCCCEEEEEECCEEE
Confidence            45555543 2455899999999999999999999999999986 799999999987 89999999999999999999999


Q ss_pred             eEEEecccc
Q psy12938        566 GNFVRLGEE  574 (612)
Q Consensus       566 ~~~vg~~~~  574 (612)
                      ++++|..+.
T Consensus        82 ~~~~G~~~~   90 (114)
T cd02954          82 KIDLGTGNN   90 (114)
T ss_pred             EEEcCCCCC
Confidence            999997655

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG0907|consensus

Probab=99.67  E-value=2.5e-16  Score=138.82  Aligned_cols=85  Identities=19%  Similarity=0.405  Sum_probs=76.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      +..+||+||++||++|+.|.|.|.+||.+|+++.|+++|+|+.. .++..|.+..+|||++||+|+.+++++|...    
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~-~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~----   95 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELE-EVAKEFNVKAMPTFVFYKGGEEVDEVVGANK----   95 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCH-hHHHhcCceEeeEEEEEECCEEEEEEecCCH----
Confidence            56899999999999999999999999999999999999999855 7889999999999999999999999999722    


Q ss_pred             CCCHHHHHHHHHHC
Q psy12938        578 GYFVEDVEAFLVEA  591 (612)
Q Consensus       578 ~~~~~~lE~~L~~~  591 (612)
                          ..|+..+.++
T Consensus        96 ----~~l~~~i~~~  105 (106)
T KOG0907|consen   96 ----AELEKKIAKH  105 (106)
T ss_pred             ----HHHHHHHHhc
Confidence                4777777654

>PHA02278 thioredoxin-like protein

Probab=99.63  E-value=1.7e-15  Score=133.11  Aligned_cols=84  Identities=15%  Similarity=0.293  Sum_probs=70.8

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCch---hchhhhCCCCCCcEEEEEECC
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGG  562 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G  562 (612)
                      +|.+.+.   +..+|||+|||+||++|+.|.|.|+++|+++ ..++|++|+++...   ..++.+|.++++|||++||||
T Consensus         6 ~~~~~i~---~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G   82 (103)
T PHA02278          6 DLNTAIR---QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDG   82 (103)
T ss_pred             HHHHHHh---CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECC
Confidence            3444453   3458999999999999999999999999885 45789999998641   268899999999999999999


Q ss_pred             EEeeEEEeccc
Q psy12938        563 EVVGNFVRLGE  573 (612)
Q Consensus       563 ~~~~~~vg~~~  573 (612)
                      +.+++++|...
T Consensus        83 ~~v~~~~G~~~   93 (103)
T PHA02278         83 QLVKKYEDQVT   93 (103)
T ss_pred             EEEEEEeCCCC
Confidence            99999999643

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.61  E-value=5.4e-15  Score=130.01  Aligned_cols=97  Identities=15%  Similarity=0.188  Sum_probs=80.6

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch--hchhhhCCCCCCcEEEEEECCEE
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~--d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      +|.+.|.+. ++.+|||+||++||++|+.|.+.|..||++|+.+.|++|+.+..+  ..++.+|.+.++||+++|++|+.
T Consensus         5 ~~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~   83 (103)
T cd02985           5 ELDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEK   83 (103)
T ss_pred             HHHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeE
Confidence            344555432 466999999999999999999999999999998999999998652  15778999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      +.++.|..        ...|...+..+|
T Consensus        84 v~~~~G~~--------~~~l~~~~~~~~  103 (103)
T cd02985          84 IHEEEGIG--------PDELIGDVLYYG  103 (103)
T ss_pred             EEEEeCCC--------HHHHHHHHHhcC
Confidence            99998863        356777766665

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.56  E-value=1.1e-14  Score=128.62  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=70.4

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      +|.++|..+ ...+|||+|+|+||++|+.|+|.|++||.+|++ +.|+++|+++.+ ++++.|.+..+||+++||||+-+
T Consensus         4 ~~d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~-dva~~y~I~amPtfvffkngkh~   81 (114)
T cd02986           4 EVDQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVP-VYTQYFDISYIPSTIFFFNGQHM   81 (114)
T ss_pred             HHHHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccH-HHHHhcCceeCcEEEEEECCcEE
Confidence            455556654 466999999999999999999999999999998 999999999998 78899999999999999999987


Q ss_pred             e
Q psy12938        566 G  566 (612)
Q Consensus       566 ~  566 (612)
                      .
T Consensus        82 ~   82 (114)
T cd02986          82 K   82 (114)
T ss_pred             E
Confidence            6

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.56  E-value=2e-14  Score=132.65  Aligned_cols=112  Identities=13%  Similarity=0.111  Sum_probs=83.7

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEE-EEECCE-
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAML-AYRGGE-  563 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtll-vyk~G~-  563 (612)
                      +|.++|..+ .+.+|||+|||+||++|+.|+|+|++||++|++ +.|++||+|+.+ .++..|.+..+||++ +||+|+ 
T Consensus        13 e~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~-dla~~y~I~~~~t~~~ffk~g~~   90 (142)
T PLN00410         13 AVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVP-DFNTMYELYDPCTVMFFFRNKHI   90 (142)
T ss_pred             HHHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCH-HHHHHcCccCCCcEEEEEECCeE
Confidence            455666533 456899999999999999999999999999987 999999999987 888999999666555 999999 


Q ss_pred             EeeEEEeccccccC-CCCHHHHHHHHH--HCCcccCCCCC
Q psy12938        564 VVGNFVRLGEELGE-GYFVEDVEAFLV--EAGLLRAGGLP  600 (612)
Q Consensus       564 ~~~~~vg~~~~~g~-~~~~~~lE~~L~--~~g~l~~~~~~  600 (612)
                      .+++..|....... -.+.++|...+.  -.|+.+.+.+.
T Consensus        91 ~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~  130 (142)
T PLN00410         91 MIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLV  130 (142)
T ss_pred             EEEEecccccccccccCCHHHHHHHHHHHHHHHhcCCeEE
Confidence            99999884322111 123355555543  24555555543

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.55  E-value=1.1e-14  Score=131.33  Aligned_cols=101  Identities=8%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHHhhccCCCCceEEEEEeCCCChh--hh--hhHHHHHHHHhhc--C-CceEEEecCCCchhchhhhCCCC
Q psy12938        479 KMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPA--CR--ALNSSLAELSRSH--T-NVKFVSVPLGCVGDHFSATFKTS  551 (612)
Q Consensus       479 R~~el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~--C~--~m~~~l~~LA~~~--~-~vkF~ki~~~~~~d~~~~~~~i~  551 (612)
                      ++.+|...+|.+.|.+  ...+||+.||+.||++  |+  +|.|+|.++|++|  . .++|+|||++..+ .++.+|.++
T Consensus        10 ~v~~lt~~nF~~~v~~--~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~-~La~~~~I~   86 (120)
T cd03065          10 RVIDLNEKNYKQVLKK--YDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA-KVAKKLGLD   86 (120)
T ss_pred             ceeeCChhhHHHHHHh--CCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH-HHHHHcCCc
Confidence            4455666778888876  4568999999999988  99  9999999999998  4 5999999999876 899999999


Q ss_pred             CCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        552 GLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       552 ~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++|||++||||+.+. ++|....       +.|..||.+
T Consensus        87 ~iPTl~lfk~G~~v~-~~G~~~~-------~~l~~~l~~  117 (120)
T cd03065          87 EEDSIYVFKDDEVIE-YDGEFAA-------DTLVEFLLD  117 (120)
T ss_pred             cccEEEEEECCEEEE-eeCCCCH-------HHHHHHHHH
Confidence            999999999999887 8887444       888888864

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.53  E-value=1.7e-14  Score=127.40  Aligned_cols=77  Identities=19%  Similarity=0.262  Sum_probs=71.2

Q ss_pred             CCceEEEEEeCCC--ChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938        497 RHITVIAHLSSPS--LPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE  573 (612)
Q Consensus       497 ~~~~Vvvhfy~~~--~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~  573 (612)
                      .+..+|+.||++|  |++|+.|.|.|++||++|++ ++|++++++..+ .++.+|+++++|||++||+|+.+++++|...
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-~la~~f~V~sIPTli~fkdGk~v~~~~G~~~  104 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-ALAARFGVLRTPALLFFRDGRYVGVLAGIRD  104 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-HHHHHcCCCcCCEEEEEECCEEEEEEeCccC
Confidence            4568999999997  99999999999999999986 899999999887 8999999999999999999999999999754


Q ss_pred             c
Q psy12938        574 E  574 (612)
Q Consensus       574 ~  574 (612)
                      .
T Consensus       105 ~  105 (111)
T cd02965         105 W  105 (111)
T ss_pred             H
Confidence            4

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.52  E-value=6.3e-14  Score=124.96  Aligned_cols=97  Identities=14%  Similarity=0.180  Sum_probs=81.5

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE  563 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~  563 (612)
                      +.|.+++.....+.+++|+||++||++|+.+.+.|.+|++++.  ++.|.+|+.+..+ .+..+|++..+||+++|++|+
T Consensus        12 ~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-~l~~~~~V~~~Pt~~i~~~g~   90 (111)
T cd02963          12 SQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-RLARKLGAHSVPAIVGIINGQ   90 (111)
T ss_pred             HHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-HHHHHcCCccCCEEEEEECCE
Confidence            3455555544467799999999999999999999999999995  5899999998765 688999999999999999999


Q ss_pred             EeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        564 VVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       564 ~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .+..+.|....       +.|..||.+
T Consensus        91 ~~~~~~G~~~~-------~~l~~~i~~  110 (111)
T cd02963          91 VTFYHDSSFTK-------QHVVDFVRK  110 (111)
T ss_pred             EEEEecCCCCH-------HHHHHHHhc
Confidence            98888776433       778888764

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.51  E-value=1.8e-13  Score=118.83  Aligned_cols=95  Identities=20%  Similarity=0.364  Sum_probs=83.9

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      .|.+.+.+  .+..+||.||++||+.|+.+.+.|.+++++|+ .+.|++||.+... .+..+|.+..+||+++|++|+.+
T Consensus         8 ~f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~~   84 (103)
T PF00085_consen    8 NFEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK-ELCKKYGVKSVPTIIFFKNGKEV   84 (103)
T ss_dssp             THHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH-HHHHHTTCSSSSEEEEEETTEEE
T ss_pred             HHHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccc-hhhhccCCCCCCEEEEEECCcEE
Confidence            45555654  35689999999999999999999999999998 8999999999775 78899999999999999999999


Q ss_pred             eEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        566 GNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       566 ~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .++.|..       +.++|..||.+|
T Consensus        85 ~~~~g~~-------~~~~l~~~i~~~  103 (103)
T PF00085_consen   85 KRYNGPR-------NAESLIEFIEKH  103 (103)
T ss_dssp             EEEESSS-------SHHHHHHHHHHH
T ss_pred             EEEECCC-------CHHHHHHHHHcC
Confidence            9888764       449999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=3.8e-14  Score=142.97  Aligned_cols=107  Identities=21%  Similarity=0.358  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEE
Q psy12938        480 MKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLA  558 (612)
Q Consensus       480 ~~el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllv  558 (612)
                      +.+....+|-++|...+..++|+|+||+|||++|+.+.+.|++|+.+|. ..++.|||.|..+ .++..|.++.+||+++
T Consensus        25 I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p-~vAaqfgiqsIPtV~a  103 (304)
T COG3118          25 IKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP-MVAAQFGVQSIPTVYA  103 (304)
T ss_pred             ceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch-hHHHHhCcCcCCeEEE
Confidence            5666667888899888888899999999999999999999999999996 5999999999887 7889999999999999


Q ss_pred             EECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938        559 YRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL  594 (612)
Q Consensus       559 yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l  594 (612)
                      |++|+.++.|.|...+       +.|..||.++.--
T Consensus       104 f~dGqpVdgF~G~qPe-------sqlr~~ld~~~~~  132 (304)
T COG3118         104 FKDGQPVDGFQGAQPE-------SQLRQFLDKVLPA  132 (304)
T ss_pred             eeCCcCccccCCCCcH-------HHHHHHHHHhcCh
Confidence            9999999999998777       8999999887654

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.50  E-value=7.4e-14  Score=124.79  Aligned_cols=88  Identities=9%  Similarity=0.029  Sum_probs=71.0

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchh-hhCCCCCCcEEEEEE
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFS-ATFKTSGLPAMLAYR  560 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~-~~~~i~~lPtllvyk  560 (612)
                      |....|.+.+.-......++|.||++||++|+.|.+.|+++|++|.+ ++|++||.+... .+. .+|.+.++|||++|+
T Consensus        14 l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-~l~~~~~~I~~~PTl~lf~   92 (113)
T cd03006          14 FYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-GKCRKQKHFFYFPVIHLYY   92 (113)
T ss_pred             echhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-HHHHHhcCCcccCEEEEEE
Confidence            33444554432123556899999999999999999999999999965 999999999775 455 589999999999999


Q ss_pred             CCEEeeEEEec
Q psy12938        561 GGEVVGNFVRL  571 (612)
Q Consensus       561 ~G~~~~~~vg~  571 (612)
                      +|+....+.|.
T Consensus        93 ~g~~~~~y~G~  103 (113)
T cd03006          93 RSRGPIEYKGP  103 (113)
T ss_pred             CCccceEEeCC
Confidence            99988777664

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.49  E-value=2e-13  Score=117.89  Aligned_cols=92  Identities=18%  Similarity=0.353  Sum_probs=78.2

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |.+.|.+ +...+|+|+||++||++|+.|.+.|.+++..|+ .++|++||.+..+ .+..+|.+.++||+++|++|+.+.
T Consensus         3 f~~~i~~-~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~g~~~~   80 (96)
T cd02956           3 FQQVLQE-STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-QIAQQFGVQALPTVYLFAAGQPVD   80 (96)
T ss_pred             hHHHHHh-cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-HHHHHcCCCCCCEEEEEeCCEEee
Confidence            4455543 245689999999999999999999999999996 4899999999876 788999999999999999999999


Q ss_pred             EEEeccccccCCCCHHHHHHHH
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      .+.|....       ++|+.+|
T Consensus        81 ~~~g~~~~-------~~l~~~l   95 (96)
T cd02956          81 GFQGAQPE-------EQLRQML   95 (96)
T ss_pred             eecCCCCH-------HHHHHHh
Confidence            88886433       7777776

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.48  E-value=9.9e-14  Score=121.38  Aligned_cols=83  Identities=11%  Similarity=0.201  Sum_probs=71.6

Q ss_pred             CCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC-CchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        496 PRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG-CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       496 ~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~-~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      .++.+|+|+||++||++|+.|.+.|+++|++|+.+.|++||.+ ..+ .+..+|++.++||+++|++| .+.++.|..  
T Consensus        16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~-~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~--   91 (100)
T cd02999          16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP-SLLSRYGVVGFPTILLFNST-PRVRYNGTR--   91 (100)
T ss_pred             cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH-HHHHhcCCeecCEEEEEcCC-ceeEecCCC--
Confidence            3567899999999999999999999999999999999999988 555 78899999999999999999 777777753  


Q ss_pred             ccCCCCHHHHHHH
Q psy12938        575 LGEGYFVEDVEAF  587 (612)
Q Consensus       575 ~g~~~~~~~lE~~  587 (612)
                           +.++|..|
T Consensus        92 -----~~~~l~~f   99 (100)
T cd02999          92 -----TLDSLAAF   99 (100)
T ss_pred             -----CHHHHHhh
Confidence                 33566554

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.48  E-value=1.7e-13  Score=121.39  Aligned_cols=98  Identities=14%  Similarity=0.262  Sum_probs=82.6

Q ss_pred             HHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECC
Q psy12938        484 YDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGG  562 (612)
Q Consensus       484 ~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G  562 (612)
                      ....|.+++.+  .+.+++|+||++||+.|+.+.+.|++|+++|. .++|.+++.+..+ .+..+|.+..+||+++|++|
T Consensus         9 ~~~~~~~~v~~--~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G   85 (109)
T PRK09381          9 TDDSFDTDVLK--ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNG   85 (109)
T ss_pred             ChhhHHHHHhc--CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-hHHHhCCCCcCCEEEEEeCC
Confidence            33456666654  35589999999999999999999999999995 5899999999776 67789999999999999999


Q ss_pred             EEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        563 EVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       563 ~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +.+.++.|...       .+.|+.+|.++
T Consensus        86 ~~~~~~~G~~~-------~~~l~~~i~~~  107 (109)
T PRK09381         86 EVAATKVGALS-------KGQLKEFLDAN  107 (109)
T ss_pred             eEEEEecCCCC-------HHHHHHHHHHh
Confidence            99998887633       47889888765

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.48  E-value=3.8e-13  Score=116.11  Aligned_cols=83  Identities=20%  Similarity=0.424  Sum_probs=73.3

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhh-cCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRS-HTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~-~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      .|.+.+.... +.+|+|+||++||..|+.|.+.|++++++ ++.++|+++|.+..+ .+..+|.+..+||+++|++|+.+
T Consensus         4 ~~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~   81 (97)
T cd02984           4 EFEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP-EISEKFEITAVPTFVFFRNGTIV   81 (97)
T ss_pred             HHHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH-HHHHhcCCccccEEEEEECCEEE
Confidence            3555555543 56999999999999999999999999999 678999999999776 78899999999999999999999


Q ss_pred             eEEEec
Q psy12938        566 GNFVRL  571 (612)
Q Consensus       566 ~~~vg~  571 (612)
                      +++.|+
T Consensus        82 ~~~~g~   87 (97)
T cd02984          82 DRVSGA   87 (97)
T ss_pred             EEEeCC
Confidence            999886

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.47  E-value=2.6e-13  Score=127.42  Aligned_cols=90  Identities=23%  Similarity=0.406  Sum_probs=78.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCC------CcEEEEEECCEEeeEE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSG------LPAMLAYRGGEVVGNF  568 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~------lPtllvyk~G~~~~~~  568 (612)
                      ...+|+|+||++||++|+.|.+.|++||++|.  +++|++||.+..+ .++++|.+..      +||+++|++|+.++++
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~  124 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-NVAEKFRVSTSPLSKQLPTIILFQGGKEVARR  124 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-HHHHHcCceecCCcCCCCEEEEEECCEEEEEE
Confidence            35589999999999999999999999999985  4999999999887 7889999988      9999999999999999


Q ss_pred             Eecccccc----CCCCHHHHHHH
Q psy12938        569 VRLGEELG----EGYFVEDVEAF  587 (612)
Q Consensus       569 vg~~~~~g----~~~~~~~lE~~  587 (612)
                      .|..+..|    ..++.++|++.
T Consensus       125 ~G~~~~~~~~~~~~~~~~~~~~~  147 (152)
T cd02962         125 PYYNDSKGRAVPFTFSKENVIRH  147 (152)
T ss_pred             eccccCccccccccccHHHHHHh
Confidence            99766655    36777777654

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.47  E-value=5.7e-13  Score=116.88  Aligned_cols=83  Identities=13%  Similarity=0.202  Sum_probs=72.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      +.+|+|+||++||++|+.|.+.|..++.+|.  .++|++++++..  .++.+|.+..+||+++|++|+.+.++.|.    
T Consensus        17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~--~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~----   90 (102)
T cd02948          17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTI--DTLKRYRGKCEPTFLFYKNGELVAVIRGA----   90 (102)
T ss_pred             CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCH--HHHHHcCCCcCcEEEEEECCEEEEEEecC----
Confidence            5589999999999999999999999999996  489999999943  67899999999999999999999999885    


Q ss_pred             cCCCCHHHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFLVE  590 (612)
Q Consensus       576 g~~~~~~~lE~~L~~  590 (612)
                          ....|+.+|.+
T Consensus        91 ----~~~~~~~~i~~  101 (102)
T cd02948          91 ----NAPLLNKTITE  101 (102)
T ss_pred             ----ChHHHHHHHhh
Confidence                22667766643

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PTZ00051 thioredoxin; Provisional

Probab=99.45  E-value=1.8e-13  Score=118.55  Aligned_cols=73  Identities=18%  Similarity=0.323  Sum_probs=68.9

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEec
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRL  571 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~  571 (612)
                      +.+++++||++||++|+.+.+.|..++++|++++|+++|.+... .+..+|.+.++||+++|++|+.++++.|.
T Consensus        18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~   90 (98)
T PTZ00051         18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS-EVAEKENITSMPTFKVFKNGSVVDTLLGA   90 (98)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH-HHHHHCCCceeeEEEEEeCCeEEEEEeCC
Confidence            45899999999999999999999999999999999999999765 78899999999999999999999999986

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.43  E-value=2.9e-13  Score=118.68  Aligned_cols=97  Identities=16%  Similarity=0.206  Sum_probs=77.8

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG  561 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~  561 (612)
                      |....|.+.|..  ...+|+|+||++||++|+.|.+.++++|++|. .++|.+||.+..+ .+..+|.+.++||+++|++
T Consensus         6 l~~~~f~~~i~~--~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~   82 (104)
T cd03004           6 LTPEDFPELVLN--RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE-SLCQQANIRAYPTIRLYPG   82 (104)
T ss_pred             cCHHHHHHHHhc--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH-HHHHHcCCCcccEEEEEcC
Confidence            344556666654  23489999999999999999999999999985 5999999999876 7789999999999999999


Q ss_pred             C-EEeeEEEeccccccCCCCHHHHHHHH
Q psy12938        562 G-EVVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       562 G-~~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      | +.+..+.|...      +.++|..||
T Consensus        83 g~~~~~~~~G~~~------~~~~l~~~i  104 (104)
T cd03004          83 NASKYHSYNGWHR------DADSILEFI  104 (104)
T ss_pred             CCCCceEccCCCC------CHHHHHhhC
Confidence            9 88887776532      135666553

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PTZ00062 glutaredoxin; Provisional

Probab=99.43  E-value=8.3e-13  Score=129.60  Aligned_cols=64  Identities=13%  Similarity=0.167  Sum_probs=60.9

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEec
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRL  571 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~  571 (612)
                      ..+|++|+++||++|+.|+++|.+||++||+++|++|+++         |++.++|||++|++|+++++++|.
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d---------~~V~~vPtfv~~~~g~~i~r~~G~   81 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA---------DANNEYGVFEFYQNSQLINSLEGC   81 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc---------cCcccceEEEEEECCEEEeeeeCC
Confidence            4799999999999999999999999999999999999975         799999999999999999999985

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.40  E-value=2.6e-12  Score=114.98  Aligned_cols=84  Identities=13%  Similarity=0.207  Sum_probs=71.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee--EEEeccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG--NFVRLGEEL  575 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~--~~vg~~~~~  575 (612)
                      ...++|.||++||++|+.|.+.|++++.+++.++|+++|.+..+ .++..|+++.+||+++|++|...+  .|.|+... 
T Consensus        22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~-   99 (113)
T cd02975          22 PVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-EKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAG-   99 (113)
T ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-HHHHHcCCCcCCEEEEEeCCeecceEEEEecCch-
Confidence            33699999999999999999999999999988999999999876 889999999999999999987766  56665333 


Q ss_pred             cCCCCHHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFLV  589 (612)
Q Consensus       576 g~~~~~~~lE~~L~  589 (612)
                            .++..||.
T Consensus       100 ------~el~~~i~  107 (113)
T cd02975         100 ------YEFASLIE  107 (113)
T ss_pred             ------HHHHHHHH
Confidence                  55555553

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PRK10996 thioredoxin 2; Provisional

Probab=99.40  E-value=1.9e-12  Score=120.18  Aligned_cols=86  Identities=21%  Similarity=0.443  Sum_probs=76.9

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      +.+|+|.||++||++|+.|.+.|.++++++. .+.|+++|.+..+ .+..+|.+.++||+++|++|+.+.++.|....  
T Consensus        52 ~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~--  128 (139)
T PRK10996         52 DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-ELSARFRIRSIPTIMIFKNGQVVDMLNGAVPK--  128 (139)
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-HHHHhcCCCccCEEEEEECCEEEEEEcCCCCH--
Confidence            4589999999999999999999999999875 6999999999776 78899999999999999999999999886443  


Q ss_pred             CCCCHHHHHHHHHHC
Q psy12938        577 EGYFVEDVEAFLVEA  591 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~  591 (612)
                           +.|+.+|.++
T Consensus       129 -----e~l~~~l~~~  138 (139)
T PRK10996        129 -----APFDSWLNEA  138 (139)
T ss_pred             -----HHHHHHHHHh
Confidence                 8899998753

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.40  E-value=7.2e-13  Score=115.69  Aligned_cols=84  Identities=13%  Similarity=0.195  Sum_probs=70.8

Q ss_pred             HHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECC
Q psy12938        484 YDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGG  562 (612)
Q Consensus       484 ~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G  562 (612)
                      ....|...+.+   ..+++|.||++||++|+.|.+.|+++|+++. .++|++||.+..+ .+.++|.+..+||+++|++|
T Consensus         7 ~~~~f~~~v~~---~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g   82 (101)
T cd03003           7 DRGDFDAAVNS---GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR-MLCRSQGVNSYPSLYVFPSG   82 (101)
T ss_pred             CHhhHHHHhcC---CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH-HHHHHcCCCccCEEEEEcCC
Confidence            33456555543   3589999999999999999999999999996 4899999999776 77899999999999999999


Q ss_pred             EEeeEEEec
Q psy12938        563 EVVGNFVRL  571 (612)
Q Consensus       563 ~~~~~~vg~  571 (612)
                      +.+..+.|.
T Consensus        83 ~~~~~~~G~   91 (101)
T cd03003          83 MNPEKYYGD   91 (101)
T ss_pred             CCcccCCCC
Confidence            887766553

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>KOG0908|consensus

Probab=99.39  E-value=1e-12  Score=128.57  Aligned_cols=83  Identities=14%  Similarity=0.277  Sum_probs=73.5

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      +|..++-.. ....|+|+|||.||++|+++.|+|+.||.+||..-|+|+|+++.. ..+..+.+..+||+++|+||..++
T Consensus        11 df~~~ls~a-g~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~-~taa~~gV~amPTFiff~ng~kid   88 (288)
T KOG0908|consen   11 DFQRELSAA-GGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECR-GTAATNGVNAMPTFIFFRNGVKID   88 (288)
T ss_pred             HHHHhhhcc-CceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhh-chhhhcCcccCceEEEEecCeEee
Confidence            455555443 455899999999999999999999999999999999999999664 688999999999999999999999


Q ss_pred             EEEec
Q psy12938        567 NFVRL  571 (612)
Q Consensus       567 ~~vg~  571 (612)
                      ++-|.
T Consensus        89 ~~qGA   93 (288)
T KOG0908|consen   89 QIQGA   93 (288)
T ss_pred             eecCC
Confidence            99886

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.36  E-value=2.2e-12  Score=112.21  Aligned_cols=94  Identities=18%  Similarity=0.396  Sum_probs=76.6

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEE
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLA  558 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllv  558 (612)
                      |..+.|.+.+.+   . .++|+||++||++|+.+.+.|.++|.++.    .++|.++|.+..+ .+..+|.+..+||+++
T Consensus         5 l~~~~f~~~~~~---~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~   79 (102)
T cd03005           5 LTEDNFDHHIAE---G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-ELCSEFQVRGYPTLLL   79 (102)
T ss_pred             CCHHHHHHHhhc---C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-hhHhhcCCCcCCEEEE
Confidence            334456666643   2 49999999999999999999999999884    5999999998765 6778999999999999


Q ss_pred             EECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938        559 YRGGEVVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       559 yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      |++|+.+.++.|...       .++|+.||
T Consensus        80 ~~~g~~~~~~~G~~~-------~~~l~~~i  102 (102)
T cd03005          80 FKDGEKVDKYKGTRD-------LDSLKEFV  102 (102)
T ss_pred             EeCCCeeeEeeCCCC-------HHHHHhhC
Confidence            999998888887643       36676664

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR01068 thioredoxin thioredoxin

Probab=99.34  E-value=6.3e-12  Score=108.53  Aligned_cols=93  Identities=20%  Similarity=0.341  Sum_probs=78.8

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |.+.+.+  ....|+++||++||+.|+.+.+.|+.++++++ .++|++++.+... .+..+|.+..+||+++|++|+.+.
T Consensus         6 ~~~~~~~--~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~P~~~~~~~g~~~~   82 (101)
T TIGR01068         6 FDETIAS--SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-DIAAKYGIRSIPTLLLFKNGKEVD   82 (101)
T ss_pred             HHHHHhh--cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHcCCCcCCEEEEEeCCcEee
Confidence            4444443  24589999999999999999999999999997 5999999998775 678999999999999999999998


Q ss_pred             EEEeccccccCCCCHHHHHHHHHH
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++.|..       +.+.|..+|.+
T Consensus        83 ~~~g~~-------~~~~l~~~l~~   99 (101)
T TIGR01068        83 RSVGAL-------PKAALKQLINK   99 (101)
T ss_pred             eecCCC-------CHHHHHHHHHh
Confidence            887763       34889988875

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.33  E-value=4.3e-12  Score=110.65  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=69.0

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      ++|+||++||++|+.|.+.|.+||..+.  .+.|.++|.+..+ .+..+|.+.++||+++|++|+. .++.|.       
T Consensus        19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~g~~-~~~~G~-------   89 (101)
T cd02994          19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP-GLSGRFFVTALPTIYHAKDGVF-RRYQGP-------   89 (101)
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH-hHHHHcCCcccCEEEEeCCCCE-EEecCC-------
Confidence            6899999999999999999999998874  5899999998775 6789999999999999999984 556654       


Q ss_pred             CCHHHHHHHHHH
Q psy12938        579 YFVEDVEAFLVE  590 (612)
Q Consensus       579 ~~~~~lE~~L~~  590 (612)
                      .+.++|..||.+
T Consensus        90 ~~~~~l~~~i~~  101 (101)
T cd02994          90 RDKEDLISFIEE  101 (101)
T ss_pred             CCHHHHHHHHhC
Confidence            344888888753

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.32  E-value=5.6e-12  Score=114.39  Aligned_cols=94  Identities=15%  Similarity=0.236  Sum_probs=71.1

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----------hchhhhCC----CC
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----------DHFSATFK----TS  551 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----------d~~~~~~~----i~  551 (612)
                      ..|.+.+.+   ...++|.||++||++|+.|.|.|++++++. .++|..+|++...          ..+.++|+    +.
T Consensus        14 ~~~~~~i~~---~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~   89 (122)
T TIGR01295        14 VRALEALDK---KETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM   89 (122)
T ss_pred             HHHHHHHHc---CCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence            344455543   336999999999999999999999999994 5778888876321          02224454    55


Q ss_pred             CCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        552 GLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       552 ~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      ++|||++||+|+.+++++|.      ..+.++|++||.
T Consensus        90 ~~PT~v~~k~Gk~v~~~~G~------~~~~~~l~~~~~  121 (122)
T TIGR01295        90 GTPTFVHITDGKQVSVRCGS------STTAQELQDIAA  121 (122)
T ss_pred             CCCEEEEEeCCeEEEEEeCC------CCCHHHHHHHhh
Confidence            69999999999999999874      345799999884

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.32  E-value=1.1e-11  Score=115.42  Aligned_cols=87  Identities=15%  Similarity=0.243  Sum_probs=72.0

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch-hchhhhCCCCCCcEEEEE-ECCEEeeEEEeccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG-DHFSATFKTSGLPAMLAY-RGGEVVGNFVRLGE  573 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~-d~~~~~~~i~~lPtllvy-k~G~~~~~~vg~~~  573 (612)
                      .+.+|||+||++||++|+.|.+.|.+|+++|. .++|+.|+.+... ..+..+|.+.++||+++| ++|+++.++.|...
T Consensus        19 ~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~   98 (142)
T cd02950          19 NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQP   98 (142)
T ss_pred             CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCC
Confidence            35589999999999999999999999999995 5899999887431 146789999999999999 58999999998744


Q ss_pred             cccCCCCHHHHHHHHHH
Q psy12938        574 ELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~~  590 (612)
                      .       +.|+.+|.+
T Consensus        99 ~-------~~l~~~l~~  108 (142)
T cd02950          99 K-------QVLAQNLDA  108 (142)
T ss_pred             H-------HHHHHHHHH
Confidence            3       556666553

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.32  E-value=1.1e-11  Score=107.59  Aligned_cols=84  Identities=17%  Similarity=0.332  Sum_probs=74.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      ...+|++.||++||+.|+.+.+.|+++++++. .+.|.++|.+..+ .+..+|.+..+||+++|++|+.+.++.|+... 
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~-   89 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-EIAEAAGIMGTPTVQFFKDKELVKEISGVKMK-   89 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-HHHHHCCCeeccEEEEEECCeEEEEEeCCccH-
Confidence            45589999999999999999999999999996 5999999999776 78899999999999999999999999998555 


Q ss_pred             cCCCCHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFL  588 (612)
Q Consensus       576 g~~~~~~~lE~~L  588 (612)
                            +++..+|
T Consensus        90 ------~~~~~~l   96 (97)
T cd02949          90 ------SEYREFI   96 (97)
T ss_pred             ------HHHHHhh
Confidence                  6666665

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.31  E-value=5.9e-12  Score=111.35  Aligned_cols=84  Identities=11%  Similarity=0.151  Sum_probs=67.2

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc----C---CceEEEecCCCchhchhhhCCCCCCcE
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH----T---NVKFVSVPLGCVGDHFSATFKTSGLPA  555 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~---~vkF~ki~~~~~~d~~~~~~~i~~lPt  555 (612)
                      |....|.+.+..   ..+|+|+||++||+.|+.|.+.+.++|+++    +   .++|++||.+... .+..+|.+..+||
T Consensus         6 l~~~~f~~~i~~---~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~v~~~Pt   81 (108)
T cd02996           6 LTSGNIDDILQS---AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES-DIADRYRINKYPT   81 (108)
T ss_pred             cCHhhHHHHHhc---CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH-HHHHhCCCCcCCE
Confidence            334456555532   348999999999999999999999999864    2   4899999999775 7889999999999


Q ss_pred             EEEEECCEEe-eEEEe
Q psy12938        556 MLAYRGGEVV-GNFVR  570 (612)
Q Consensus       556 llvyk~G~~~-~~~vg  570 (612)
                      +++|++|+.. ..+.|
T Consensus        82 l~~~~~g~~~~~~~~g   97 (108)
T cd02996          82 LKLFRNGMMMKREYRG   97 (108)
T ss_pred             EEEEeCCcCcceecCC
Confidence            9999999943 43333

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG3550|consensus

Probab=99.31  E-value=9.6e-13  Score=118.72  Aligned_cols=103  Identities=27%  Similarity=0.392  Sum_probs=84.6

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccccCCCCcccce
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGADAGLEKLGI  388 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~~~~~~~~~i  388 (612)
                      ...|+|-|...||||.|.|   |++   .+.+|||++|+|||.|++.|.|+.||    |||+++.|--|...        
T Consensus        91 prvvelpktdeglgfnvmg---gke---qnspiyisriipggvadrhgglkrgdqllsvngvsvege~heka--------  156 (207)
T KOG3550|consen   91 PRVVELPKTDEGLGFNVMG---GKE---QNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKA--------  156 (207)
T ss_pred             CceeecCccccccceeecc---Ccc---cCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHH--------
Confidence            3459999999999999999   666   56799999999999999999999999    99999999544211        


Q ss_pred             EEEEeeccccccccCcceeccCCccccchHHHHHHHHHHHHHHHH
Q psy12938        389 FVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFKQYECQMRRDKE  433 (612)
Q Consensus       389 ~i~~i~~~~~a~~dg~l~~~~~~~gv~~d~~~f~~~~~~~~~~~~  433 (612)
                          +----+|...-.|.+..-||-+.++..||++++..+||++.
T Consensus       157 ----vellkaa~gsvklvvrytpkvleeme~rfek~r~~rrrqq~  197 (207)
T KOG3550|consen  157 ----VELLKAAVGSVKLVVRYTPKVLEEMEARFEKQRSARRRQQS  197 (207)
T ss_pred             ----HHHHHHhcCcEEEEEecChHHHHHHHHHHHHHHHHHHhhcC
Confidence                11123555666788899999999999999999988877754

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.30  E-value=7.6e-12  Score=109.93  Aligned_cols=85  Identities=14%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLG  572 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~  572 (612)
                      ....|+|+||++||++|+.|.+.|++++++|.    .+.|.+++.+..+ .+..+|.+.++||+++|++|.. ..+.|. 
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~I~~~Pt~~l~~~~~~-~~~~G~-   90 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS-SIASEFGVRGYPTIKLLKGDLA-YNYRGP-   90 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH-hHHhhcCCccccEEEEEcCCCc-eeecCC-
Confidence            34589999999999999999999999999873    4899999988765 6779999999999999998853 434442 


Q ss_pred             ccccCCCCHHHHHHHHHH
Q psy12938        573 EELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       573 ~~~g~~~~~~~lE~~L~~  590 (612)
                            .+.+.|..|+.+
T Consensus        91 ------~~~~~l~~~~~~  102 (104)
T cd03000          91 ------RTKDDIVEFANR  102 (104)
T ss_pred             ------CCHHHHHHHHHh
Confidence                  456889888875

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.22  E-value=2.8e-11  Score=106.19  Aligned_cols=83  Identities=13%  Similarity=0.172  Sum_probs=71.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHH---HHHHhhcC-CceEEEecCCC----chhchhhhCCCCCCcEEEEEE--CCEEeeE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSL---AELSRSHT-NVKFVSVPLGC----VGDHFSATFKTSGLPAMLAYR--GGEVVGN  567 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~-~vkF~ki~~~~----~~d~~~~~~~i~~lPtllvyk--~G~~~~~  567 (612)
                      +.+|+|.||++||++|+.|.+.+   .++++.+. .+.|++||.+.    .. .+..+|.+.++||+++|+  +|+.+.+
T Consensus        11 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~-~~~~~~~i~~~Pti~~~~~~~g~~~~~   89 (104)
T cd02953          11 GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEIT-ALLKRFGVFGPPTYLFYGPGGEPEPLR   89 (104)
T ss_pred             CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHH-HHHHHcCCCCCCEEEEECCCCCCCCcc
Confidence            45899999999999999999987   67888886 79999999875    33 677899999999999999  8999999


Q ss_pred             EEeccccccCCCCHHHHHHHH
Q psy12938        568 FVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       568 ~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      +.|+...       ++|+.+|
T Consensus        90 ~~G~~~~-------~~l~~~l  103 (104)
T cd02953          90 LPGFLTA-------DEFLEAL  103 (104)
T ss_pred             cccccCH-------HHHHHHh
Confidence            8887444       7787776

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.22  E-value=2.9e-11  Score=106.61  Aligned_cols=101  Identities=13%  Similarity=0.233  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCC--chhchhhhCCCCCCcEEEEE
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGC--VGDHFSATFKTSGLPAMLAY  559 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~--~~d~~~~~~~i~~lPtllvy  559 (612)
                      |....|.+.|.+  ...+++|+||++||+.|+.|.+.|.++|+++. .++|+.++.+.  .+ .+..+|.+.++||+++|
T Consensus         5 l~~~~~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~-~~~~~~~i~~~Pt~~~~   81 (109)
T cd03002           5 LTPKNFDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNK-PLCGKYGVQGFPTLKVF   81 (109)
T ss_pred             cchhhHHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccH-HHHHHcCCCcCCEEEEE
Confidence            444556666654  34579999999999999999999999999986 48999999886  54 67789999999999999


Q ss_pred             ECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938        560 RGGEVVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       560 k~G~~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      ++|..+...... ...| ..+.++|..|+
T Consensus        82 ~~~~~~~~~~~~-~~~G-~~~~~~l~~fi  108 (109)
T cd03002          82 RPPKKASKHAVE-DYNG-ERSAKAIVDFV  108 (109)
T ss_pred             eCCCcccccccc-cccC-ccCHHHHHHHh
Confidence            999843222111 1112 34567777775

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.20  E-value=5.7e-11  Score=102.96  Aligned_cols=94  Identities=16%  Similarity=0.266  Sum_probs=77.7

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCchhchhhhCCCCCCcEEEEEECCE
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE  563 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~  563 (612)
                      .|...+.   ++..++|+||++||+.|+.+.+.|+.+|..+.   .++|++++.+..+ .+..+|.+..+|++++|++|.
T Consensus         5 ~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~i~~~P~~~~~~~~~   80 (102)
T TIGR01126         5 NFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK-DLASRFGVSGFPTIKFFPKGK   80 (102)
T ss_pred             hHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH-HHHHhCCCCcCCEEEEecCCC
Confidence            3444443   35589999999999999999999999999986   4999999998776 778999999999999999998


Q ss_pred             EeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        564 VVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       564 ~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .+..+.|.       .+.+.|+.||.++
T Consensus        81 ~~~~~~g~-------~~~~~l~~~i~~~  101 (102)
T TIGR01126        81 KPVDYEGG-------RDLEAIVEFVNEK  101 (102)
T ss_pred             cceeecCC-------CCHHHHHHHHHhc
Confidence            75555553       4558899998764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.20  E-value=5.2e-11  Score=107.14  Aligned_cols=77  Identities=17%  Similarity=0.319  Sum_probs=63.3

Q ss_pred             HHHhhccCCCCceEEEEEeC-------CCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch------hchhhhCCCC-C
Q psy12938        488 FLSEIDSEPRHITVIAHLSS-------PSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG------DHFSATFKTS-G  552 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~-------~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~------d~~~~~~~i~-~  552 (612)
                      |.+.|.. .++.+|+|+|||       +||++|+.|.+.|++++.+|+ .++|++|+++..+      ..+...|.+. +
T Consensus        12 f~~~i~~-~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~   90 (119)
T cd02952          12 FLKLLKS-HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTG   90 (119)
T ss_pred             HHHHHHh-cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccC
Confidence            4444543 245689999999       999999999999999999998 7999999997521      2577889998 9


Q ss_pred             CcEEEEEECCEEe
Q psy12938        553 LPAMLAYRGGEVV  565 (612)
Q Consensus       553 lPtllvyk~G~~~  565 (612)
                      +|||++|++|..+
T Consensus        91 iPT~~~~~~~~~l  103 (119)
T cd02952          91 VPTLLRWKTPQRL  103 (119)
T ss_pred             CCEEEEEcCCcee
Confidence            9999999887543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.18  E-value=5.1e-11  Score=103.85  Aligned_cols=81  Identities=14%  Similarity=0.306  Sum_probs=68.0

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCC--chhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGC--VGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~--~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      +++|.||++||+.|+.+.+.+..+++.+.   .+.|+++|.+.  .+ .+..+|++..+||+++|++|+.+.++.|..  
T Consensus        19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~--   95 (104)
T cd02997          19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHD-ALKEEYNVKGFPTFKYFENGKFVEKYEGER--   95 (104)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccH-HHHHhCCCccccEEEEEeCCCeeEEeCCCC--
Confidence            89999999999999999999999998874   48899999886  54 677899999999999999999887776643  


Q ss_pred             ccCCCCHHHHHHHH
Q psy12938        575 LGEGYFVEDVEAFL  588 (612)
Q Consensus       575 ~g~~~~~~~lE~~L  588 (612)
                           ..+.|..||
T Consensus        96 -----~~~~l~~~l  104 (104)
T cd02997          96 -----TAEDIIEFM  104 (104)
T ss_pred             -----CHHHHHhhC
Confidence                 235665553

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.17  E-value=8.1e-11  Score=117.42  Aligned_cols=102  Identities=15%  Similarity=0.235  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhhccC--CCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEE
Q psy12938        482 QMYDRLFLSEIDSE--PRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLA  558 (612)
Q Consensus       482 el~~~~~~~~V~~~--~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllv  558 (612)
                      +|....|.+.+...  ....+++|.||++||++|+.|.+.++++|++|.. ++|.++|.+..+ .+.++|.+.++||+++
T Consensus        34 ~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~-~l~~~~~I~~~PTl~~  112 (224)
T PTZ00443         34 LLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL-NLAKRFAIKGYPTLLL  112 (224)
T ss_pred             ECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH-HHHHHcCCCcCCEEEE
Confidence            33344454444321  1245799999999999999999999999999974 899999998776 7889999999999999


Q ss_pred             EECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        559 YRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       559 yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      |++|+.+....|       ..+.++|..|+.++
T Consensus       113 f~~G~~v~~~~G-------~~s~e~L~~fi~~~  138 (224)
T PTZ00443        113 FDKGKMYQYEGG-------DRSTEKLAAFALGD  138 (224)
T ss_pred             EECCEEEEeeCC-------CCCHHHHHHHHHHH
Confidence            999987764433       34568888887644

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.17  E-value=2.5e-10  Score=95.89  Aligned_cols=82  Identities=26%  Similarity=0.462  Sum_probs=72.8

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      .++++.||++||+.|+.+.+.|.+++++++++.|++++.+... .+...|++..+||+++|++|+.+..+.|...     
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~-----   84 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENP-ELAEEYGVRSIPTFLFFKNGKEVDRVVGADP-----   84 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCCh-hHHHhcCcccccEEEEEECCEEEEEEecCCC-----
Confidence            5799999999999999999999999999999999999998765 6789999999999999999999998887633     


Q ss_pred             CCHHHHHHHH
Q psy12938        579 YFVEDVEAFL  588 (612)
Q Consensus       579 ~~~~~lE~~L  588 (612)
                        .+.|..+|
T Consensus        85 --~~~l~~~i   92 (93)
T cd02947          85 --KEELEEFL   92 (93)
T ss_pred             --HHHHHHHh
Confidence              27777765

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.15  E-value=4.7e-11  Score=103.98  Aligned_cols=75  Identities=19%  Similarity=0.342  Sum_probs=63.0

Q ss_pred             HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC---ceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938        485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN---VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG  561 (612)
Q Consensus       485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~---vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~  561 (612)
                      ...|.+.+.+.  ...++|.||++||+.|+.|.+.|.++|+.+..   ++|.++|.+..  .+...+.+..+||+++|++
T Consensus         7 ~~~f~~~i~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~~Pt~~~~~~   82 (104)
T cd02995           7 GKNFDEVVLDS--DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVPSEFVVDGFPTILFFPA   82 (104)
T ss_pred             hhhhHHHHhCC--CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhhhhccCCCCCEEEEEcC
Confidence            34565555543  35799999999999999999999999998754   99999998875  4667888999999999999


Q ss_pred             CE
Q psy12938        562 GE  563 (612)
Q Consensus       562 G~  563 (612)
                      |.
T Consensus        83 ~~   84 (104)
T cd02995          83 GD   84 (104)
T ss_pred             CC
Confidence            98

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.12  E-value=2.2e-10  Score=99.73  Aligned_cols=93  Identities=12%  Similarity=0.216  Sum_probs=72.2

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCE-
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE-  563 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~-  563 (612)
                      ..|.+.+.+  ...++++.||++||+.|+.+.+.|..+|++++ .++|.+++.+..+ .+..+|.+.++|++++|++|. 
T Consensus         8 ~~~~~~i~~--~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~i~~~P~~~~~~~~~~   84 (103)
T cd03001           8 SNFDKKVLN--SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ-SLAQQYGVRGFPTIKVFGAGKN   84 (103)
T ss_pred             HhHHHHHhc--CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH-HHHHHCCCCccCEEEEECCCCc
Confidence            345555544  23469999999999999999999999999985 5999999998775 678999999999999999992 


Q ss_pred             EeeEEEeccccccCCCCHHHHHHHH
Q psy12938        564 VVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       564 ~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      ....+.|       ..+.++|.+|+
T Consensus        85 ~~~~~~g-------~~~~~~l~~~~  102 (103)
T cd03001          85 SPQDYQG-------GRTAKAIVSAA  102 (103)
T ss_pred             ceeecCC-------CCCHHHHHHHh
Confidence            2222222       34557776664

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.12  E-value=1.8e-10  Score=98.72  Aligned_cols=92  Identities=16%  Similarity=0.287  Sum_probs=73.9

Q ss_pred             HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc---CCceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938        485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG  561 (612)
Q Consensus       485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~  561 (612)
                      .+.|.+.+.+..   .++|+||++||+.|+.+.+.|.++++.+   ..++|++++.+..+ .+..+|.+..+||+++|++
T Consensus         5 ~~~~~~~i~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~i~~~Pt~~~~~~   80 (101)
T cd02961           5 DDNFDELVKDSK---DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN-DLCSEYGVRGYPTIKLFPN   80 (101)
T ss_pred             HHHHHHHHhCCC---cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH-HHHHhCCCCCCCEEEEEcC
Confidence            345666666532   8999999999999999999999999998   67999999998755 7889999999999999999


Q ss_pred             C-EEeeEEEeccccccCCCCHHHHHHH
Q psy12938        562 G-EVVGNFVRLGEELGEGYFVEDVEAF  587 (612)
Q Consensus       562 G-~~~~~~vg~~~~~g~~~~~~~lE~~  587 (612)
                      | ....++.|.       .+.++|.+|
T Consensus        81 ~~~~~~~~~g~-------~~~~~i~~~  100 (101)
T cd02961          81 GSKEPVKYEGP-------RTLESLVEF  100 (101)
T ss_pred             CCcccccCCCC-------cCHHHHHhh
Confidence            8 555555543       244666655

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.11  E-value=1.9e-10  Score=102.09  Aligned_cols=99  Identities=19%  Similarity=0.282  Sum_probs=70.7

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCC-chhchhh-hCCCCCCcEEEE
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGC-VGDHFSA-TFKTSGLPAMLA  558 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~-~~d~~~~-~~~i~~lPtllv  558 (612)
                      |...+|-..+....++.+++|+||++||++|+.|.+.|.++|++|.  .++|.+|+.+. .. .++. .|.+..+||+++
T Consensus         6 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~-~~~~~~~~v~~~Pti~~   84 (109)
T cd02993           6 LSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQR-EFAKEELQLKSFPTILF   84 (109)
T ss_pred             ccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccch-hhHHhhcCCCcCCEEEE
Confidence            3344444434323345689999999999999999999999999985  48999999886 32 3444 599999999999


Q ss_pred             EECCEE-eeEEEeccccccCCCCHHHHHHHH
Q psy12938        559 YRGGEV-VGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       559 yk~G~~-~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      |++|.. ...+      -|...+.++|..||
T Consensus        85 f~~~~~~~~~y------~g~~~~~~~l~~f~  109 (109)
T cd02993          85 FPKNSRQPIKY------PSEQRDVDSLLMFV  109 (109)
T ss_pred             EcCCCCCceec------cCCCCCHHHHHhhC
Confidence            988753 2222      22234566666654

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.09  E-value=1.8e-10  Score=103.18  Aligned_cols=98  Identities=16%  Similarity=0.141  Sum_probs=71.7

Q ss_pred             HHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCC--CchhchhhhCCCCCCcEEE
Q psy12938        484 YDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLG--CVGDHFSATFKTSGLPAML  557 (612)
Q Consensus       484 ~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~--~~~d~~~~~~~i~~lPtll  557 (612)
                      ....|.+.|...  ..+|+|+||++||++|+.|.+.|+++|+++.    .++|.++|.+  ..+ .+..+|.++.+||++
T Consensus         7 ~~~~f~~~i~~~--~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~-~~~~~~~i~~~Pt~~   83 (114)
T cd02992           7 DAASFNSALLGS--PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENV-ALCRDFGVTGYPTLR   83 (114)
T ss_pred             CHHhHHHHHhcC--CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhH-HHHHhCCCCCCCEEE
Confidence            334565556542  3589999999999999999999999999763    3999999854  333 567899999999999


Q ss_pred             EEECCEEeeEEEeccccccCCCCHHHHHH
Q psy12938        558 AYRGGEVVGNFVRLGEELGEGYFVEDVEA  586 (612)
Q Consensus       558 vyk~G~~~~~~vg~~~~~g~~~~~~~lE~  586 (612)
                      +|++|. .....|..-.++.. ..+.+..
T Consensus        84 lf~~~~-~~~~~~~~~~~~~~-~~~~~~~  110 (114)
T cd02992          84 YFPPFS-KEATDGLKQEGPER-DVNELRE  110 (114)
T ss_pred             EECCCC-ccCCCCCcccCCcc-CHHHHHH
Confidence            999999 44455553333322 4444433

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.07  E-value=2.6e-10  Score=99.36  Aligned_cols=92  Identities=17%  Similarity=0.296  Sum_probs=71.2

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCC-chhchhhhCCCCCCcEEEEEECC
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGC-VGDHFSATFKTSGLPAMLAYRGG  562 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~-~~d~~~~~~~i~~lPtllvyk~G  562 (612)
                      .|.+.+.+  ...+++++||++||+.|+.+.+.+..+++++.   .+.|+++|.+. .+ .+..+|.+.++|++++|++|
T Consensus         9 ~~~~~~~~--~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~~i~~~P~~~~~~~~   85 (105)
T cd02998           9 NFDKVVGD--DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK-DLAKKYGVSGFPTLKFFPKG   85 (105)
T ss_pred             cHHHHhcC--CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch-hhHHhCCCCCcCEEEEEeCC
Confidence            34444433  23479999999999999999999999999975   59999999887 65 77899999999999999988


Q ss_pred             E-EeeEEEeccccccCCCCHHHHHHHH
Q psy12938        563 E-VVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       563 ~-~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      . ....+.|       ..+.+.|..||
T Consensus        86 ~~~~~~~~g-------~~~~~~l~~~i  105 (105)
T cd02998          86 STEPVKYEG-------GRDLEDLVKFV  105 (105)
T ss_pred             CCCccccCC-------ccCHHHHHhhC
Confidence            4 3332222       35567777664

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.05  E-value=1.3e-09  Score=108.67  Aligned_cols=92  Identities=15%  Similarity=0.259  Sum_probs=71.2

Q ss_pred             HHHhhccCCCCceEEEEEeC---CCChhhhhhHHHHHHHHhhcCCce--EEEecCCCchhchhhhCCCCCCcEEEEEECC
Q psy12938        488 FLSEIDSEPRHITVIAHLSS---PSLPACRALNSSLAELSRSHTNVK--FVSVPLGCVGDHFSATFKTSGLPAMLAYRGG  562 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~---~~~~~C~~m~~~l~~LA~~~~~vk--F~ki~~~~~~d~~~~~~~i~~lPtllvyk~G  562 (612)
                      |++.+.+   . ..++-|++   +||++|+.|.+.|++||++|+.++  |++++++..+ .++.+|.+..+|||++|++|
T Consensus        13 ~~~~~~~---~-~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-~l~~~~~V~~~Pt~~~f~~g   87 (215)
T TIGR02187        13 FLKELKN---P-VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-EEAEKYGVERVPTTIILEEG   87 (215)
T ss_pred             HHHhcCC---C-eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-HHHHHcCCCccCEEEEEeCC
Confidence            4555532   3 34445777   999999999999999999998654  7777776665 78899999999999999999


Q ss_pred             EEee-EEEeccccccCCCCHHHHHHHHHHC
Q psy12938        563 EVVG-NFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       563 ~~~~-~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +.+. ++.|+...       +++..||...
T Consensus        88 ~~~~~~~~G~~~~-------~~l~~~i~~~  110 (215)
T TIGR02187        88 KDGGIRYTGIPAG-------YEFAALIEDI  110 (215)
T ss_pred             eeeEEEEeecCCH-------HHHHHHHHHH
Confidence            9985 89997444       5565565433

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.04  E-value=6.4e-10  Score=121.55  Aligned_cols=104  Identities=17%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhch-hhhCCCCCCcEEEE
Q psy12938        482 QMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHF-SATFKTSGLPAMLA  558 (612)
Q Consensus       482 el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~-~~~~~i~~lPtllv  558 (612)
                      +|....|-+.|...+...+|+|+||++||++|+.|.+.|+++|++|.  .++|++|+++.....+ ..+|.+.++|||++
T Consensus       355 ~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~  434 (463)
T TIGR00424       355 SLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF  434 (463)
T ss_pred             ECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence            34445565555423456689999999999999999999999999995  3899999988542123 46899999999999


Q ss_pred             EECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        559 YRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       559 yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      |++|...  -+.+   -|...+.+.|-.|+..
T Consensus       435 Fk~g~~~--~~~Y---~~g~R~~e~L~~Fv~~  461 (463)
T TIGR00424       435 FPKHSSR--PIKY---PSEKRDVDSLMSFVNL  461 (463)
T ss_pred             EECCCCC--ceeC---CCCCCCHHHHHHHHHh
Confidence            9999632  1222   2334677888888753

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PHA02125 thioredoxin-like protein

Probab=99.01  E-value=1.9e-09  Score=89.09  Aligned_cols=61  Identities=16%  Similarity=0.303  Sum_probs=54.5

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEec
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRL  571 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~  571 (612)
                      |+.||++||++|+.+.+.|+.++     .+|++||.+... .++.+|.+.++||++   +|+.++++.|+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~-~l~~~~~v~~~PT~~---~g~~~~~~~G~   62 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGV-ELTAKHHIRSLPTLV---NTSTLDRFTGV   62 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCH-HHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence            78999999999999999998774     578999988765 788999999999998   78999988887

>KOG1892|consensus

Probab=98.99  E-value=3.2e-10  Score=126.83  Aligned_cols=64  Identities=42%  Similarity=0.729  Sum_probs=59.1

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..++.+|+|.|. .|+|+||+.   -++.+...+|||||+|++||||+.||||+.||    |||.||+|+++
T Consensus       931 ~pei~~vtL~Kn-nGmGLSIVA---AkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQ  998 (1629)
T KOG1892|consen  931 EPEIITVTLKKN-NGMGLSIVA---AKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQ  998 (1629)
T ss_pred             CCceEEEEEecc-CCceEEEEe---eccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccH
Confidence            357899999999 799999999   66677788999999999999999999999999    99999999988

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.97  E-value=1.8e-09  Score=94.11  Aligned_cols=86  Identities=16%  Similarity=0.191  Sum_probs=72.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCC--CCcEEEEEEC--CEEeeEEEecc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTS--GLPAMLAYRG--GEVVGNFVRLG  572 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~--~lPtllvyk~--G~~~~~~vg~~  572 (612)
                      ..++++.||++||++|+.|.+.|+++|++|. .++|+.||++..+ .+...|.+.  .+|++++|++  |.....     
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~-~~~~~~~i~~~~~P~~~~~~~~~~~k~~~-----   85 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG-RHLEYFGLKEEDLPVIAIINLSDGKKYLM-----   85 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH-HHHHHcCCChhhCCEEEEEecccccccCC-----
Confidence            3479999999999999999999999999995 5999999999876 678999999  9999999999  554331     


Q ss_pred             ccccCCCCHHHHHHHHHHC
Q psy12938        573 EELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       573 ~~~g~~~~~~~lE~~L~~~  591 (612)
                        .+..++.+.|+.||.++
T Consensus        86 --~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          86 --PEEELTAESLEEFVEDF  102 (103)
T ss_pred             --CccccCHHHHHHHHHhh
Confidence              12235889999999753

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.95  E-value=2e-09  Score=97.65  Aligned_cols=84  Identities=12%  Similarity=0.231  Sum_probs=65.6

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHH---HHHhhc-CCceEEEecCCCc------------hhchhhhCCCCCCcEEEEEEC-
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLA---ELSRSH-TNVKFVSVPLGCV------------GDHFSATFKTSGLPAMLAYRG-  561 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~---~LA~~~-~~vkF~ki~~~~~------------~d~~~~~~~i~~lPtllvyk~-  561 (612)
                      .+|+|+||++||+.|+.|.+.+.   .++..+ ..+.|++|+++..            ...+...|.+.++||+++|.+ 
T Consensus        15 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~   94 (125)
T cd02951          15 KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPE   94 (125)
T ss_pred             CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCC
Confidence            48999999999999999998874   565555 3578899988742            125778999999999999987 


Q ss_pred             -CEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        562 -GEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       562 -G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                       |+.+.+++|+...       +.++.+|.
T Consensus        95 gg~~~~~~~G~~~~-------~~~~~~l~  116 (125)
T cd02951          95 GGKEIARLPGYLPP-------DEFLAYLE  116 (125)
T ss_pred             CCceeEEecCCCCH-------HHHHHHHH
Confidence             5999999887433       55555554

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.94  E-value=1.5e-09  Score=97.68  Aligned_cols=78  Identities=21%  Similarity=0.289  Sum_probs=62.6

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCchhchhhhCCCCC--CcEEEEEE-CCEEeeEEEecc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVGDHFSATFKTSG--LPAMLAYR-GGEVVGNFVRLG  572 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~d~~~~~~~i~~--lPtllvyk-~G~~~~~~vg~~  572 (612)
                      .+.+|+|+||++||++|+.|.+.+.+++..+ ...+|+.++.+...+.....|.+.+  +||+++|. +|+++.++++.-
T Consensus        18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~   97 (117)
T cd02959          18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKK   97 (117)
T ss_pred             cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccCC
Confidence            3458999999999999999999999987765 3568888887754323457888876  99999995 999999887764


Q ss_pred             cc
Q psy12938        573 EE  574 (612)
Q Consensus       573 ~~  574 (612)
                      +.
T Consensus        98 ~~   99 (117)
T cd02959          98 GN   99 (117)
T ss_pred             CC
Confidence            33

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>PLN02309 5'-adenylylsulfate reductase

Probab=98.93  E-value=2.7e-09  Score=116.65  Aligned_cols=100  Identities=18%  Similarity=0.249  Sum_probs=75.3

Q ss_pred             HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC-Cchhchhh-hCCCCCCcEEEEEE
Q psy12938        485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG-CVGDHFSA-TFKTSGLPAMLAYR  560 (612)
Q Consensus       485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~-~~~d~~~~-~~~i~~lPtllvyk  560 (612)
                      ..+|.+.+...+....++|.||++||++|+.|.+.|++||++|.  .++|.++|++ ... .+.. +|.+..+|||++|+
T Consensus       352 ~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~-~la~~~~~I~~~PTil~f~  430 (457)
T PLN02309        352 RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK-EFAKQELQLGSFPTILLFP  430 (457)
T ss_pred             HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch-HHHHhhCCCceeeEEEEEe
Confidence            33444434323356689999999999999999999999999984  4999999998 433 4544 69999999999999


Q ss_pred             CCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        561 GGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       561 ~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +|...  .+.+   .|..-+.++|..|+..
T Consensus       431 ~g~~~--~v~Y---~~~~R~~~~L~~fv~~  455 (457)
T PLN02309        431 KNSSR--PIKY---PSEKRDVDSLLSFVNS  455 (457)
T ss_pred             CCCCC--eeec---CCCCcCHHHHHHHHHH
Confidence            98642  2222   3345677888888865

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.88  E-value=7.3e-09  Score=103.27  Aligned_cols=80  Identities=14%  Similarity=0.219  Sum_probs=68.7

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY  579 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~  579 (612)
                      .+|+-||++||++|+.|.+.++.++.+++.++|.++|.+..+ .++.+|+++.+||+++|++|..   ++|....     
T Consensus       135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~-~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~-----  205 (215)
T TIGR02187       135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP-DLAEKYGVMSVPKIVINKGVEE---FVGAYPE-----  205 (215)
T ss_pred             cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH-HHHHHhCCccCCEEEEecCCEE---EECCCCH-----
Confidence            455569999999999999999999999999999999999886 7889999999999999999974   6665433     


Q ss_pred             CHHHHHHHHHH
Q psy12938        580 FVEDVEAFLVE  590 (612)
Q Consensus       580 ~~~~lE~~L~~  590 (612)
                        ++|..+|.+
T Consensus       206 --~~l~~~l~~  214 (215)
T TIGR02187       206 --EQFLEYILS  214 (215)
T ss_pred             --HHHHHHHHh
Confidence              777777754

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.87  E-value=1.2e-08  Score=84.92  Aligned_cols=78  Identities=18%  Similarity=0.319  Sum_probs=63.6

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY  579 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~  579 (612)
                      .|.-||++||+.|+.+.+.|++|+++|. .+.|.+||.+..+ .+..+|.++++||+++  +|+.  .+.|...      
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~vPt~~~--~g~~--~~~G~~~------   70 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-QKAMEYGIMAVPAIVI--NGDV--EFIGAPT------   70 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-HHHHHcCCccCCEEEE--CCEE--EEecCCC------
Confidence            4667999999999999999999999985 5999999998776 6778999999999986  8863  5666433      


Q ss_pred             CHHHHHHHHHH
Q psy12938        580 FVEDVEAFLVE  590 (612)
Q Consensus       580 ~~~~lE~~L~~  590 (612)
                       .+++..+|.+
T Consensus        71 -~~~l~~~l~~   80 (82)
T TIGR00411        71 -KEELVEAIKK   80 (82)
T ss_pred             -HHHHHHHHHh
Confidence             3677777754

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.86  E-value=1.3e-08  Score=84.38  Aligned_cols=73  Identities=12%  Similarity=0.175  Sum_probs=58.1

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYF  580 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~  580 (612)
                      .|.||++||++|+.|.+.+++++++++ .++|++|+.  .  ..+.+|.+.++|||++  ||+++  +.|..      -.
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~--~--~~a~~~~v~~vPti~i--~G~~~--~~G~~------~~   67 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTD--M--NEILEAGVTATPGVAV--DGELV--IMGKI------PS   67 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC--H--HHHHHcCCCcCCEEEE--CCEEE--EEecc------CC
Confidence            478999999999999999999999996 489999882  2  2357899999999999  99888  66641      12


Q ss_pred             HHHHHHHH
Q psy12938        581 VEDVEAFL  588 (612)
Q Consensus       581 ~~~lE~~L  588 (612)
                      .+.|+.+|
T Consensus        68 ~~~l~~~l   75 (76)
T TIGR00412        68 KEEIKEIL   75 (76)
T ss_pred             HHHHHHHh
Confidence            25666655

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PTZ00102 disulphide isomerase; Provisional

Probab=98.81  E-value=1.2e-08  Score=113.52  Aligned_cols=102  Identities=16%  Similarity=0.179  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCchhchhhhCCCCCCcEEEEE
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVGDHFSATFKTSGLPAMLAY  559 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~d~~~~~~~i~~lPtllvy  559 (612)
                      |....|.+.|.+  .+..|+|.||++||+.|+.|.+.|+++|+.+.   .+.|.++|.+... .....|.++++||+++|
T Consensus       362 l~~~~f~~~v~~--~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~-~~~~~~~v~~~Pt~~~~  438 (477)
T PTZ00102        362 VVGNTFEEIVFK--SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE-TPLEEFSWSAFPTILFV  438 (477)
T ss_pred             ecccchHHHHhc--CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc-cchhcCCCcccCeEEEE
Confidence            334456666654  34579999999999999999999999999875   4899999988664 56678999999999999


Q ss_pred             ECCEEee-EEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938        560 RGGEVVG-NFVRLGEELGEGYFVEDVEAFLVEAGLL  594 (612)
Q Consensus       560 k~G~~~~-~~vg~~~~~g~~~~~~~lE~~L~~~g~l  594 (612)
                      ++|..+. .+.|.       .+.+.+..||.++..-
T Consensus       439 ~~~~~~~~~~~G~-------~~~~~l~~~i~~~~~~  467 (477)
T PTZ00102        439 KAGERTPIPYEGE-------RTVEGFKEFVNKHATN  467 (477)
T ss_pred             ECCCcceeEecCc-------CCHHHHHHHHHHcCCC
Confidence            9987652 34443       4558999999988753

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.78  E-value=2.1e-08  Score=80.52  Aligned_cols=61  Identities=16%  Similarity=0.316  Sum_probs=54.4

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      |+-||++||+.|+.+.+.|++|+..++.++|..+|.+..+ ++..+|.+..+||+++  +|+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~-~l~~~~~i~~vPti~i--~~~~~   63 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFP-DLADEYGVMSVPAIVI--NGKVE   63 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCH-hHHHHcCCcccCEEEE--CCEEE
Confidence            5679999999999999999999999999999999998776 6889999999999876  66544

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=98.76  E-value=2.7e-08  Score=90.78  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=66.4

Q ss_pred             CChhhhhhHHHHHHHHhhcC-C-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHH
Q psy12938        509 SLPACRALNSSLAELSRSHT-N-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEA  586 (612)
Q Consensus       509 ~~~~C~~m~~~l~~LA~~~~-~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~  586 (612)
                      -++.+.-+.=+|++||++|+ . ++|++||++..+ .++.+|+++++|||++||||+.+++++|+...       +++..
T Consensus        47 r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~-~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k-------~~l~~  118 (132)
T PRK11509         47 RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-AIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW-------AELIN  118 (132)
T ss_pred             cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCH-HHHHHcCCccCCEEEEEECCEEEEEEeCcCCH-------HHHHH
Confidence            56778888999999999998 3 899999999886 89999999999999999999999999998666       77777


Q ss_pred             HHHHC
Q psy12938        587 FLVEA  591 (612)
Q Consensus       587 ~L~~~  591 (612)
                      +|.++
T Consensus       119 ~I~~~  123 (132)
T PRK11509        119 LMRGL  123 (132)
T ss_pred             HHHHH
Confidence            77643

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.75  E-value=2e-08  Score=110.78  Aligned_cols=94  Identities=18%  Similarity=0.307  Sum_probs=73.4

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG  561 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~  561 (612)
                      ..|...+.+   ...++|.||++||++|+.+.+.+.++|+.+    +.+.|++||.+..+ .+..+|.+.+.||+++|++
T Consensus         9 ~~~~~~i~~---~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~   84 (462)
T TIGR01130         9 DNFDDFIKS---HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK-DLAQKYGVSGYPTLKIFRN   84 (462)
T ss_pred             HHHHHHHhc---CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH-HHHHhCCCccccEEEEEeC
Confidence            345444533   337899999999999999999999998865    45999999998775 7889999999999999999


Q ss_pred             CEE-eeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        562 GEV-VGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       562 G~~-~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      |.. +..+.|..       +.+.|..|+.+
T Consensus        85 g~~~~~~~~g~~-------~~~~l~~~i~~  107 (462)
T TIGR01130        85 GEDSVSDYNGPR-------DADGIVKYMKK  107 (462)
T ss_pred             CccceeEecCCC-------CHHHHHHHHHH
Confidence            998 67676642       23555555543

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=98.72  E-value=4.5e-08  Score=108.85  Aligned_cols=99  Identities=15%  Similarity=0.251  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCchhchhhhCCCCCCcEE
Q psy12938        481 KQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCVGDHFSATFKTSGLPAM  556 (612)
Q Consensus       481 ~el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~~d~~~~~~~i~~lPtl  556 (612)
                      .+|....|...+.+   ...++|.||++||+.|+.|.+.+..+|..+    +.+.|.+||.+... .+..+|++.+.||+
T Consensus        35 ~~l~~~~f~~~i~~---~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-~l~~~~~i~~~Pt~  110 (477)
T PTZ00102         35 TVLTDSTFDKFITE---NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-ELAQEFGVRGYPTI  110 (477)
T ss_pred             EEcchhhHHHHHhc---CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-HHHHhcCCCcccEE
Confidence            33444445555543   237999999999999999999999988664    46999999988765 78899999999999


Q ss_pred             EEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        557 LAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       557 lvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      ++|++|..+ .+.|.       .+.+.|..||.++
T Consensus       111 ~~~~~g~~~-~y~g~-------~~~~~l~~~l~~~  137 (477)
T PTZ00102        111 KFFNKGNPV-NYSGG-------RTADGIVSWIKKL  137 (477)
T ss_pred             EEEECCceE-EecCC-------CCHHHHHHHHHHh
Confidence            999999876 55543       3558888888765

>KOG0190|consensus

Probab=98.71  E-value=2.5e-08  Score=108.65  Aligned_cols=86  Identities=17%  Similarity=0.352  Sum_probs=71.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE  573 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~  573 (612)
                      ...++|.||||||+.|+.|.|.+++.|+..    +.++.++||+.... .++.+|.+++.|||.+||||.......|...
T Consensus        42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~-~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~  120 (493)
T KOG0190|consen   42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES-DLASKYEVRGYPTLKIFRNGRSAQDYNGPRE  120 (493)
T ss_pred             CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-hhHhhhcCCCCCeEEEEecCCcceeccCccc
Confidence            348999999999999999999999998764    47999999999775 7889999999999999999998444555433


Q ss_pred             cccCCCCHHHHHHHHHHC
Q psy12938        574 ELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~~~  591 (612)
                             .+.|-.||.++
T Consensus       121 -------adgIv~wl~kq  131 (493)
T KOG0190|consen  121 -------ADGIVKWLKKQ  131 (493)
T ss_pred             -------HHHHHHHHHhc
Confidence                   36677777654

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.68  E-value=5.7e-08  Score=107.16  Aligned_cols=97  Identities=15%  Similarity=0.250  Sum_probs=76.3

Q ss_pred             HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEE
Q psy12938        485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR  560 (612)
Q Consensus       485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk  560 (612)
                      ...|.+.|.+  ....|+|.||++||++|+.|.+.+++||+.+.    .++|+++|++..  .+.. |.+..+||+++|+
T Consensus       353 ~~~f~~~v~~--~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~~-~~i~~~Pt~~~~~  427 (462)
T TIGR01130       353 GKNFDEIVLD--ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVPP-FEVEGFPTIKFVP  427 (462)
T ss_pred             CcCHHHHhcc--CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccCC-CCccccCEEEEEe
Confidence            3445555544  35589999999999999999999999999986    489999999865  3444 9999999999999


Q ss_pred             CCEEe--eEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938        561 GGEVV--GNFVRLGEELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       561 ~G~~~--~~~vg~~~~~g~~~~~~~lE~~L~~~g~  593 (612)
                      +|...  ..+.|       ..+.+.|..||.+++-
T Consensus       428 ~~~~~~~~~~~g-------~~~~~~l~~~l~~~~~  455 (462)
T TIGR01130       428 AGKKSEPVPYDG-------DRTLEDFSKFIAKHAT  455 (462)
T ss_pred             CCCCcCceEecC-------cCCHHHHHHHHHhcCC
Confidence            99864  22333       2456899999988763

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.64  E-value=1.2e-07  Score=105.29  Aligned_cols=85  Identities=12%  Similarity=0.155  Sum_probs=69.4

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC----------------------------CCchhchhh
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL----------------------------GCVGDHFSA  546 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~----------------------------~~~~d~~~~  546 (612)
                      ++.+|||+||++||++|+.+.|.|.+|+++|.  ++.|+.|..                            +..+ .+..
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~-~lak  133 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGG-TLAQ  133 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccH-HHHH
Confidence            45689999999999999999999999999986  578876642                            1122 4667


Q ss_pred             hCCCCCCcEEE-EEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        547 TFKTSGLPAML-AYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       547 ~~~i~~lPtll-vyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      .|.+.++||++ ++++|+++..++|....       ++|+.+|.
T Consensus       134 ~fgV~giPTt~IIDkdGkIV~~~~G~~~~-------eeL~a~Ie  170 (521)
T PRK14018        134 SLNISVYPSWAIIGKDGDVQRIVKGSISE-------AQALALIR  170 (521)
T ss_pred             HcCCCCcCeEEEEcCCCeEEEEEeCCCCH-------HHHHHHHH
Confidence            89999999994 55899999999997554       78888887

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.63  E-value=1.2e-07  Score=86.04  Aligned_cols=75  Identities=16%  Similarity=0.173  Sum_probs=60.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC-----------------------CchhchhhhCCCCCCc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG-----------------------CVGDHFSATFKTSGLP  554 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~-----------------------~~~d~~~~~~~i~~lP  554 (612)
                      ..+|||+||++||+.|+.+.+.|.++++++. ++|+.|+.+                       ..+ .+...|++..+|
T Consensus        25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~v~~~P  102 (127)
T cd03010          25 GKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG-RVGIDLGVYGVP  102 (127)
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc-hHHHhcCCCCCC
Confidence            4589999999999999999999999998884 888777632                       111 345679999999


Q ss_pred             -EEEEEECCEEeeEEEecccc
Q psy12938        555 -AMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       555 -tllvyk~G~~~~~~vg~~~~  574 (612)
                       ++++.++|+++..+.|..++
T Consensus       103 ~~~~ld~~G~v~~~~~G~~~~  123 (127)
T cd03010         103 ETFLIDGDGIIRYKHVGPLTP  123 (127)
T ss_pred             eEEEECCCceEEEEEeccCCh
Confidence             66677899999999987554

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.62  E-value=7.3e-08  Score=109.39  Aligned_cols=86  Identities=13%  Similarity=0.254  Sum_probs=70.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHH---HHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEE-CCEEe--eEE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSL---AELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYR-GGEVV--GNF  568 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk-~G~~~--~~~  568 (612)
                      +.+|+|+||++||..|+.|++..   .++++++.++.|+++|.++..   ..+.++|++.++||+++|+ +|+.+  .++
T Consensus       474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~  553 (571)
T PRK00293        474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARV  553 (571)
T ss_pred             CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccc
Confidence            45899999999999999998875   678888888999999987431   2567899999999999996 89884  667


Q ss_pred             EeccccccCCCCHHHHHHHHHH
Q psy12938        569 VRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       569 vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +|..+       .+++.++|.+
T Consensus       554 ~G~~~-------~~~f~~~L~~  568 (571)
T PRK00293        554 TGFMD-------AAAFAAHLRQ  568 (571)
T ss_pred             cCCCC-------HHHHHHHHHH
Confidence            77533       4788888875

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.61  E-value=2.1e-07  Score=87.81  Aligned_cols=83  Identities=13%  Similarity=0.208  Sum_probs=60.2

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch-----------hchh-hhC---CCCCCcEEEEEE-C-C
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG-----------DHFS-ATF---KTSGLPAMLAYR-G-G  562 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~-----------d~~~-~~~---~i~~lPtllvyk-~-G  562 (612)
                      +++|+||++||++|+...|.|.+++++| .++|+.|+.+...           .... ..|   .+.++||++++. + |
T Consensus        52 ~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~  130 (153)
T TIGR02738        52 YALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTR  130 (153)
T ss_pred             CEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCC
Confidence            6799999999999999999999999999 4667666554210           1122 334   788999999993 3 4


Q ss_pred             EEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        563 EVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       563 ~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .......|...+       ++++..|.+
T Consensus       131 ~i~~~~~G~~s~-------~~l~~~I~~  151 (153)
T TIGR02738       131 KAYPVLQGAVDE-------AELANRMDE  151 (153)
T ss_pred             EEEEEeecccCH-------HHHHHHHHH
Confidence            456667776444       677777654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.60  E-value=1.4e-07  Score=80.72  Aligned_cols=64  Identities=16%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      .-+.-|+++||+.|..+.+.+++|++.+|+++|..+|.+..+ +++.+|+++.+||+++  ||+++.
T Consensus        14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~-e~a~~~~V~~vPt~vi--dG~~~~   77 (89)
T cd03026          14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQ-DEVEERGIMSVPAIFL--NGELFG   77 (89)
T ss_pred             EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCH-HHHHHcCCccCCEEEE--CCEEEE
Confidence            466778889999999999999999999999999999999776 7889999999999964  898776

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>KOG0190|consensus

Probab=98.60  E-value=6.5e-08  Score=105.48  Aligned_cols=97  Identities=21%  Similarity=0.335  Sum_probs=76.1

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc---CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCE
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE  563 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~  563 (612)
                      .|.+.|.++.+  -|+|.||||||+.|+.|.|++++||.+|   +++-+.|||++.+  ++ ..+.+.+.|||++|+.|.
T Consensus       375 nfd~iv~de~K--dVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaN--d~-~~~~~~~fPTI~~~pag~  449 (493)
T KOG0190|consen  375 NFDDIVLDEGK--DVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAN--DV-PSLKVDGFPTILFFPAGH  449 (493)
T ss_pred             CHHHHhhcccc--ceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccc--cC-ccccccccceEEEecCCC
Confidence            46666766544  5999999999999999999999999998   4689999999876  23 667788899999999998


Q ss_pred             EeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938        564 VVGNFVRLGEELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       564 ~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~  593 (612)
                      ...-+ .+   .| +-+.+++..|+.++|-
T Consensus       450 k~~pv-~y---~g-~R~le~~~~fi~~~a~  474 (493)
T KOG0190|consen  450 KSNPV-IY---NG-DRTLEDLKKFIKKSAT  474 (493)
T ss_pred             CCCCc-cc---CC-CcchHHHHhhhccCCC
Confidence            54311 11   12 2356889999998886

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.59  E-value=1.8e-07  Score=83.72  Aligned_cols=98  Identities=17%  Similarity=0.227  Sum_probs=67.6

Q ss_pred             HHHHHHHhhccCCCCceEEEEEeC--CCCh---hhhhhHHHHHHHHhhcCCceEEEecCCC-----chhchhhhCCCC--
Q psy12938        484 YDRLFLSEIDSEPRHITVIAHLSS--PSLP---ACRALNSSLAELSRSHTNVKFVSVPLGC-----VGDHFSATFKTS--  551 (612)
Q Consensus       484 ~~~~~~~~V~~~~~~~~Vvvhfy~--~~~~---~C~~m~~~l~~LA~~~~~vkF~ki~~~~-----~~d~~~~~~~i~--  551 (612)
                      ....|-+.|.+   ...|+|.||+  |||.   .|+.|.+.+..-|.   .+.+.+|+++.     .. .+..+|.|.  
T Consensus         7 ~~~nF~~~v~~---~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~-~L~~~y~I~~~   79 (116)
T cd03007           7 DTVTFYKVIPK---FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNM-ELGERYKLDKE   79 (116)
T ss_pred             ChhhHHHHHhc---CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhH-HHHHHhCCCcC
Confidence            34456666643   3479999999  8888   55555554444332   38899999842     22 688999999  


Q ss_pred             CCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        552 GLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       552 ~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      +.|||++|++|..-.- +   ..-|.+.+.+.|-.|+.+++
T Consensus        80 gyPTl~lF~~g~~~~~-~---~Y~G~~r~~~~lv~~v~~~~  116 (116)
T cd03007          80 SYPVIYLFHGGDFENP-V---PYSGADVTVDALQRFLKGNT  116 (116)
T ss_pred             CCCEEEEEeCCCcCCC-c---cCCCCcccHHHHHHHHHhcC
Confidence            9999999999952210 1   22343478899999998763

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>KOG3605|consensus

Probab=98.57  E-value=7e-08  Score=105.30  Aligned_cols=93  Identities=26%  Similarity=0.434  Sum_probs=77.5

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCC--eEEEEEeecCCCCchh------------------hHHhh------hcc
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSG--LVRFLIGREKDPVNSE------------------VAQLI------RQS   54 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~--~v~l~v~r~~~~~~~~------------------i~~i~------~G~   54 (612)
                      +||+|+.|||.+|.++..+-+..++|+...  .|+|+|.+.++-....                  |-.+.      .|+
T Consensus       694 IGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V~I~RPd~kyQLGFSVQNGiICSLlRGGIAERGG  773 (829)
T KOG3605|consen  694 IGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTVLIRRPDLRYQLGFSVQNGIICSLLRGGIAERGG  773 (829)
T ss_pred             ccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceEEEeecccchhhccceeeCcEeehhhcccchhccC
Confidence            699999999999999999999999998765  7888887775432111                  33333      358


Q ss_pred             cCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        55 L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      +++|.||++|||++|....|+..|.+|.++-|.++++..
T Consensus       774 VRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIhMKTM  812 (829)
T KOG3605|consen  774 VRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIHMKTM  812 (829)
T ss_pred             ceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhhhhcc
Confidence            999999999999999999999999999999998888653

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.56  E-value=3.5e-07  Score=88.01  Aligned_cols=85  Identities=19%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----------------------hchhhhCCCCCCc-
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----------------------DHFSATFKTSGLP-  554 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----------------------d~~~~~~~i~~lP-  554 (612)
                      +.+|+++||++||+.|+.+.+.|.+++++  +++++.|+.+...                      ..+...|.+.++| 
T Consensus        63 gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~  140 (173)
T TIGR00385        63 GKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPE  140 (173)
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCe
Confidence            45899999999999999999999999875  3666666542110                      0345678899999 


Q ss_pred             EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        555 AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       555 tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      ++++.++|+++..+.|....       ++++.+|.++
T Consensus       141 ~~~id~~G~i~~~~~G~~~~-------~~l~~~l~~~  170 (173)
T TIGR00385       141 TFLVDGNGVILYRHAGPLNN-------EVWTEGFLPA  170 (173)
T ss_pred             EEEEcCCceEEEEEeccCCH-------HHHHHHHHHH
Confidence            55566899999999886444       7888887664

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR02740 TraF-like TraF-like protein

Probab=98.53  E-value=4.7e-07  Score=93.40  Aligned_cols=84  Identities=8%  Similarity=0.085  Sum_probs=62.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc----------hhchhhhCCCCCCcEEEEEEC-CEEee
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV----------GDHFSATFKTSGLPAMLAYRG-GEVVG  566 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~----------~d~~~~~~~i~~lPtllvyk~-G~~~~  566 (612)
                      ..+++|+||++||+.|+.+.++|..++++|. +.|+.|+.+..          ...++.+|++..+||+++++. |..+.
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~  244 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT  244 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence            4489999999999999999999999999996 55555554421          014678999999999999986 55554


Q ss_pred             E-EEeccccccCCCCHHHHHHHHH
Q psy12938        567 N-FVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       567 ~-~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      . ..|+.       +.++|+.++.
T Consensus       245 ~v~~G~~-------s~~eL~~~i~  261 (271)
T TIGR02740       245 PIGFGVM-------SADELVDRIL  261 (271)
T ss_pred             EEEeCCC-------CHHHHHHHHH
Confidence            2 33442       3366766664

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.53  E-value=9.4e-08  Score=79.97  Aligned_cols=58  Identities=33%  Similarity=0.556  Sum_probs=50.1

Q ss_pred             EEEEee-CCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        315 GVELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       315 ~v~l~k-~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +|.|.| ...+|||.+.+   +.+..  ..++||.+|.|+|+|+++| |++||    |||.++.++++.
T Consensus         1 ~v~l~k~~~~~lG~~l~~---~~~~~--~~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~   63 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRG---GSDND--EKGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHD   63 (81)
T ss_dssp             EEEEEESTTSBSSEEEEE---ESTSS--SEEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHH
T ss_pred             CEEEEeCCCCCcCEEEEe---cCCCC--cCCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHH
Confidence            378888 66899999999   55432  4699999999999999999 99999    999999998773

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3580|consensus

Probab=98.52  E-value=4.9e-07  Score=97.75  Aligned_cols=51  Identities=24%  Similarity=0.452  Sum_probs=46.6

Q ss_pred             hHHhhh-----cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         47 VAQLIR-----QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        47 i~~i~~-----G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      |+++..     |.||.||+|+.|||+++++++|.-|+++|+.++-.-.++|.|...
T Consensus        44 iSDVlpGGPAeG~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRprk   99 (1027)
T KOG3580|consen   44 ISDVLPGGPAEGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPRK   99 (1027)
T ss_pred             EeeccCCCCcccccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccce
Confidence            666664     499999999999999999999999999999999999999998766

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.49  E-value=7e-07  Score=86.91  Aligned_cols=76  Identities=17%  Similarity=0.190  Sum_probs=58.0

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchh----------------------chhhhCCCCCCc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGD----------------------HFSATFKTSGLP  554 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d----------------------~~~~~~~i~~lP  554 (612)
                      ++.+|||+||++||++|+...+.|.+++++  +++|+.|+.+...+                      .+...|.+.++|
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P  144 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP  144 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence            355899999999999999999999999764  68888887543211                      122368899999


Q ss_pred             E-EEEEECCEEeeEEEecccc
Q psy12938        555 A-MLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       555 t-llvyk~G~~~~~~vg~~~~  574 (612)
                      + +++-++|+++.+++|....
T Consensus       145 ~t~vid~~G~i~~~~~G~~~~  165 (185)
T PRK15412        145 ETFLIDGNGIIRYRHAGDLNP  165 (185)
T ss_pred             eEEEECCCceEEEEEecCCCH
Confidence            5 5555799999999886433

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.46  E-value=3.1e-07  Score=81.28  Aligned_cols=85  Identities=15%  Similarity=0.328  Sum_probs=61.6

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHH---HHhhc-CCceEEEecCCCch-------------------hchhhhCCCCCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAE---LSRSH-TNVKFVSVPLGCVG-------------------DHFSATFKTSGL  553 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~---LA~~~-~~vkF~ki~~~~~~-------------------d~~~~~~~i~~l  553 (612)
                      ...++|+.||++||+.|+.|.+.+..   +...+ ..+.++.++.+...                   ..+...|.+.+.
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt   83 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT   83 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence            35589999999999999999999885   44444 25777777765421                   247789999999


Q ss_pred             cEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938        554 PAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       554 Ptllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      ||+++| ++|+.+..+.|+...       ++|..+|
T Consensus        84 Pt~~~~d~~G~~v~~~~G~~~~-------~~l~~~L  112 (112)
T PF13098_consen   84 PTIVFLDKDGKIVYRIPGYLSP-------EELLKML  112 (112)
T ss_dssp             SEEEECTTTSCEEEEEESS--H-------HHHHHHH
T ss_pred             CEEEEEcCCCCEEEEecCCCCH-------HHHHhhC
Confidence            999999 489999999998555       7777765

...

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.43  E-value=1.1e-06  Score=79.91  Aligned_cols=76  Identities=8%  Similarity=0.026  Sum_probs=57.9

Q ss_pred             CCceEEEEEeCCCChhhhhhHHH-H--HHHHhh-cCCceEEEecCCCchhchhh--------hCCCCCCcEEEEE-ECCE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSS-L--AELSRS-HTNVKFVSVPLGCVGDHFSA--------TFKTSGLPAMLAY-RGGE  563 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~-l--~~LA~~-~~~vkF~ki~~~~~~d~~~~--------~~~i~~lPtllvy-k~G~  563 (612)
                      .+.+|+++||++||+.|+.|+.. |  .++++. +.+..++++|++..+ .+..        .|.+.++||++++ .+|+
T Consensus        14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~-~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~   92 (124)
T cd02955          14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP-DVDKIYMNAAQAMTGQGGWPLNVFLTPDLK   92 (124)
T ss_pred             cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc-HHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence            34589999999999999999872 3  245554 356788899988654 3433        3688999999999 6799


Q ss_pred             EeeEEEeccc
Q psy12938        564 VVGNFVRLGE  573 (612)
Q Consensus       564 ~~~~~vg~~~  573 (612)
                      .+....++..
T Consensus        93 ~~~~~~~~~~  102 (124)
T cd02955          93 PFFGGTYFPP  102 (124)
T ss_pred             EEeeeeecCC
Confidence            9998877733

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=98.38  E-value=1e-06  Score=80.37  Aligned_cols=70  Identities=29%  Similarity=0.427  Sum_probs=55.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCch-----------------------hchhhhCCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVG-----------------------DHFSATFKT  550 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~-----------------------d~~~~~~~i  550 (612)
                      +.+|+|+||++||++|+.+.+.|.++.+++.    .++++-|..+...                       ..+...|.+
T Consensus        18 gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   97 (131)
T cd03009          18 GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKI   97 (131)
T ss_pred             CcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCC
Confidence            4589999999999999999999999887763    4666666554221                       135568999


Q ss_pred             CCCcEEEEEE-CCEEeeE
Q psy12938        551 SGLPAMLAYR-GGEVVGN  567 (612)
Q Consensus       551 ~~lPtllvyk-~G~~~~~  567 (612)
                      .++|++++|. +|+++.+
T Consensus        98 ~~~P~~~lid~~G~i~~~  115 (131)
T cd03009          98 EGIPTLIILDADGEVVTT  115 (131)
T ss_pred             CCCCEEEEECCCCCEEcc
Confidence            9999999995 9998774

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.34  E-value=1.9e-06  Score=74.98  Aligned_cols=72  Identities=24%  Similarity=0.403  Sum_probs=62.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc-----------------------hhchhhhCCCCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV-----------------------GDHFSATFKTSG  552 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~-----------------------~d~~~~~~~i~~  552 (612)
                      ..++++.||++||+.|+...+.|..+..+|  ++++|+.|+.+..                       . .+...|.+..
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   97 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG-ELAKAYGVRG   97 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc-hHHHhcCcCc
Confidence            458999999999999999999999999999  7899999988753                       2 5678899999


Q ss_pred             CcEEEEE-ECCEEeeEEEe
Q psy12938        553 LPAMLAY-RGGEVVGNFVR  570 (612)
Q Consensus       553 lPtllvy-k~G~~~~~~vg  570 (612)
                      +|+++++ ++|+++.++.|
T Consensus        98 ~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          98 LPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             cceEEEECCCCcEEEEecC
Confidence            9999998 58999887754

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.33  E-value=1.5e-06  Score=105.12  Aligned_cols=75  Identities=15%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecC---C------------------------Cchhchhhh
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPL---G------------------------CVGDHFSAT  547 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~---~------------------------~~~d~~~~~  547 (612)
                      +..+|||+||++||++|+...|.|.+|+++|.+  +.|+.|..   +                        ... .+...
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~-~~~~~  497 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM-YLWRE  497 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch-HHHHh
Confidence            456999999999999999999999999999964  66776631   1                        111 34578


Q ss_pred             CCCCCCcEEEEE-ECCEEeeEEEecc
Q psy12938        548 FKTSGLPAMLAY-RGGEVVGNFVRLG  572 (612)
Q Consensus       548 ~~i~~lPtllvy-k~G~~~~~~vg~~  572 (612)
                      |.+.++|++++| ++|+++.++.|..
T Consensus       498 ~~V~~iPt~ilid~~G~iv~~~~G~~  523 (1057)
T PLN02919        498 LGVSSWPTFAVVSPNGKLIAQLSGEG  523 (1057)
T ss_pred             cCCCccceEEEECCCCeEEEEEeccc
Confidence            999999999999 8999999988853

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=98.29  E-value=2e-06  Score=78.76  Aligned_cols=72  Identities=26%  Similarity=0.403  Sum_probs=55.1

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCch------------------------hchhhhC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVG------------------------DHFSATF  548 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~------------------------d~~~~~~  548 (612)
                      ++.+|+|+||++||++|+.+.+.|.+++++|.    .+.++-|+.+...                        ..+...|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            35589999999999999999999999987764    4666666544311                        1344569


Q ss_pred             CCCCCcEEEEEE-CCEEeeEE
Q psy12938        549 KTSGLPAMLAYR-GGEVVGNF  568 (612)
Q Consensus       549 ~i~~lPtllvyk-~G~~~~~~  568 (612)
                      .+.++|+++++. +|+++.+.
T Consensus        96 ~v~~iPt~~lid~~G~iv~~~  116 (132)
T cd02964          96 KVEGIPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             CCCCCCEEEEECCCCCEEchh
Confidence            999999999995 78877643

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.27  E-value=5.4e-06  Score=79.17  Aligned_cols=86  Identities=16%  Similarity=0.201  Sum_probs=69.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCch---------------------hchhhhCCCCCCc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVG---------------------DHFSATFKTSGLP  554 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~---------------------d~~~~~~~i~~lP  554 (612)
                      +.++++.||++||+.|+...+.|.+++++|.+  ++|+.|..+...                     ..+...|++..+|
T Consensus        61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  140 (173)
T PRK03147         61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP  140 (173)
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence            34799999999999999999999999999964  889988765221                     1456889999999


Q ss_pred             EEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        555 AMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       555 tllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +++++ ++|+++..+.|..       ..++++.+|.+
T Consensus       141 ~~~lid~~g~i~~~~~g~~-------~~~~l~~~l~~  170 (173)
T PRK03147        141 TTFLIDKDGKVVKVITGEM-------TEEQLEEYLEK  170 (173)
T ss_pred             eEEEECCCCcEEEEEeCCC-------CHHHHHHHHHH
Confidence            87777 5899988777653       34888888875

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=98.26  E-value=3e-06  Score=79.14  Aligned_cols=71  Identities=17%  Similarity=0.372  Sum_probs=54.6

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---------CceEEEecCCCch------------------------hc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT---------NVKFVSVPLGCVG------------------------DH  543 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---------~vkF~ki~~~~~~------------------------d~  543 (612)
                      +..+|+++|||+||++|+...|.|.++.+++.         .+.|+-|+.+...                        ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            34589999999999999999999999766442         4677777655211                        13


Q ss_pred             hhhhCCCCCCcEEEEEE-CCEEeeE
Q psy12938        544 FSATFKTSGLPAMLAYR-GGEVVGN  567 (612)
Q Consensus       544 ~~~~~~i~~lPtllvyk-~G~~~~~  567 (612)
                      +...|.+.++||++++. +|+++.+
T Consensus       104 l~~~y~v~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008         104 LEAQFSVEELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             HHHHcCCCCCCEEEEECCCCcEEee
Confidence            45688999999999995 8888874

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>KOG4277|consensus

Probab=98.25  E-value=1.8e-06  Score=86.87  Aligned_cols=84  Identities=13%  Similarity=0.257  Sum_probs=67.5

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      .-+|.||||||..|+.+.|+..++--+..    .+|.-|+++...+ .++.+|.+++.||+.+||+|-.+. +-|-..  
T Consensus        45 iW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~-aiAnefgiqGYPTIk~~kgd~a~d-YRG~R~--  120 (468)
T KOG4277|consen   45 IWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFP-AIANEFGIQGYPTIKFFKGDHAID-YRGGRE--  120 (468)
T ss_pred             eEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccch-hhHhhhccCCCceEEEecCCeeee-cCCCcc--
Confidence            56789999999999999999999866543    5999999999887 788999999999999999998876 333222  


Q ss_pred             cCCCCHHHHHHHHHHCC
Q psy12938        576 GEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~g  592 (612)
                           .++|-.|-.+..
T Consensus       121 -----Kd~iieFAhR~a  132 (468)
T KOG4277|consen  121 -----KDAIIEFAHRCA  132 (468)
T ss_pred             -----HHHHHHHHHhcc
Confidence                 266666665543

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=98.23  E-value=6.2e-06  Score=79.53  Aligned_cols=82  Identities=11%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc------------hhchhhhCCC--CCCcEEEEE-ECCEEe-
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV------------GDHFSATFKT--SGLPAMLAY-RGGEVV-  565 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~------------~d~~~~~~~i--~~lPtllvy-k~G~~~-  565 (612)
                      +|+||++||++|+...+.|..++++|. +.++-|..+..            +..+...|.+  .++||.+++ ++|+.+ 
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~  151 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL  151 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence            667999999999999999999999994 78877765521            1124457874  699999999 889886 


Q ss_pred             eEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        566 GNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       566 ~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      ..++|..+.       ++|+..+.+.
T Consensus       152 ~~~~G~~~~-------~~L~~~I~~l  170 (181)
T PRK13728        152 PLLQGATDA-------AGFMARMDTV  170 (181)
T ss_pred             EEEECCCCH-------HHHHHHHHHH
Confidence            578887655       6666665543

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=98.15  E-value=6.5e-06  Score=70.56  Aligned_cols=63  Identities=21%  Similarity=0.330  Sum_probs=50.2

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCch------------------------hchhhhCCCC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVG------------------------DHFSATFKTS  551 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~------------------------d~~~~~~~i~  551 (612)
                      .++++.||++||++|+...+.|.++.++|+   .+.|+-|..+...                        ..+...|.+.
T Consensus         2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~   81 (95)
T PF13905_consen    2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN   81 (95)
T ss_dssp             SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence            479999999999999999999999999999   7999988765321                        1245689999


Q ss_pred             CCcEEEEEEC
Q psy12938        552 GLPAMLAYRG  561 (612)
Q Consensus       552 ~lPtllvyk~  561 (612)
                      ++|+++++..
T Consensus        82 ~iP~~~lld~   91 (95)
T PF13905_consen   82 GIPTLVLLDP   91 (95)
T ss_dssp             SSSEEEEEET
T ss_pred             cCCEEEEECC
Confidence            9999998853

...

>KOG3553|consensus

Probab=98.15  E-value=3.2e-06  Score=71.73  Aligned_cols=62  Identities=29%  Similarity=0.442  Sum_probs=50.2

Q ss_pred             EEEEEeeCC----CC-----cceEEEeccCCCCCC-----CCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        314 LGVELMKGA----EG-----LGLSIIGMGVGADAG-----LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       314 ~~v~l~k~~----~g-----lG~si~g~~~g~~~~-----~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      +.|+|+|..    .|     +||+|.| |...|..     .-|.||||++|.+||||+..| ||.+|    |||-++.=+
T Consensus        17 i~velHK~~~~d~~Gre~l~~GFkIGG-GIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMv   94 (124)
T KOG3553|consen   17 IRVELHKLRDYDQQGRENLILGFKIGG-GIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMV   94 (124)
T ss_pred             EEEEeeeehhhhcCCcEEEEEEEEecc-ccCCCcccCCCCcCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEE
Confidence            357777764    45     8999999 4443322     256799999999999999999 99999    999999999


Q ss_pred             cc
Q psy12938        376 GV  377 (612)
Q Consensus       376 ~~  377 (612)
                      +|
T Consensus        95 TH   96 (124)
T KOG3553|consen   95 TH   96 (124)
T ss_pred             Eh
Confidence            98

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.13  E-value=9.4e-06  Score=74.35  Aligned_cols=71  Identities=11%  Similarity=0.165  Sum_probs=46.5

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhh---CCCCCCcEEEEE-ECCEEeeEEEec
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT---FKTSGLPAMLAY-RGGEVVGNFVRL  571 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~---~~i~~lPtllvy-k~G~~~~~~vg~  571 (612)
                      .-++-|..+||+.|...-|+|.++|+..|++++--+..|... ++...   .....+|+|+++ ++|+.+++|+..
T Consensus        43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~-el~~~~lt~g~~~IP~~I~~d~~~~~lg~wger  117 (129)
T PF14595_consen   43 YNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENK-ELMDQYLTNGGRSIPTFIFLDKDGKELGRWGER  117 (129)
T ss_dssp             EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHH-HHTTTTTT-SS--SSEEEEE-TT--EEEEEESS
T ss_pred             cEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCh-hHHHHHHhCCCeecCEEEEEcCCCCEeEEEcCC
Confidence            466679999999999999999999999987665555444333 22233   457899999999 568999988765

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.10  E-value=1.5e-05  Score=71.61  Aligned_cols=75  Identities=21%  Similarity=0.215  Sum_probs=56.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecC---------------------CCchhchhhhCCCCCCcEE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPL---------------------GCVGDHFSATFKTSGLPAM  556 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~---------------------~~~~d~~~~~~~i~~lPtl  556 (612)
                      ...+++.||++||+.|+.+.+.|..+++++. +-.+.++.                     +... .+...|++.++|++
T Consensus        20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~P~~   97 (123)
T cd03011          20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG-VISARWGVSVTPAI   97 (123)
T ss_pred             CCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc-HHHHhCCCCcccEE
Confidence            3589999999999999999999999988743 22222221                     1112 46788999999999


Q ss_pred             EEEECCEEeeEEEecccc
Q psy12938        557 LAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       557 lvyk~G~~~~~~vg~~~~  574 (612)
                      ++|.++.....+.|+...
T Consensus        98 ~vid~~gi~~~~~g~~~~  115 (123)
T cd03011          98 VIVDPGGIVFVTTGVTSE  115 (123)
T ss_pred             EEEcCCCeEEEEeccCCH
Confidence            999765588888887655

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.08  E-value=1.5e-05  Score=72.36  Aligned_cols=74  Identities=12%  Similarity=0.015  Sum_probs=59.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC-----Cch---------------------hchhhhCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG-----CVG---------------------DHFSATFK  549 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~-----~~~---------------------d~~~~~~~  549 (612)
                      +.+||+.||+.||+.|....+.|.+|.++|.  +++++-|...     ...                     ..+...|.
T Consensus        23 gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~  102 (126)
T cd03012          23 GKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAYG  102 (126)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHhC
Confidence            4589999999999999999999999999996  4888877531     000                     02335689


Q ss_pred             CCCCcEEEEE-ECCEEeeEEEec
Q psy12938        550 TSGLPAMLAY-RGGEVVGNFVRL  571 (612)
Q Consensus       550 i~~lPtllvy-k~G~~~~~~vg~  571 (612)
                      +..+|+++++ ++|+++..++|-
T Consensus       103 v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012         103 NQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             CCcCCeEEEECCCCcEEEEEecC
Confidence            9999999999 689999988874

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.06  E-value=8.3e-06  Score=68.11  Aligned_cols=46  Identities=24%  Similarity=0.444  Sum_probs=41.1

Q ss_pred             hHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         47 VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        47 i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      .++...| |++||+|++|||+++.++++.+++.+|+.+.+.|+|+|.
T Consensus        36 ~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V~   81 (81)
T PF00595_consen   36 SPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTVQ   81 (81)
T ss_dssp             SHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEEE
T ss_pred             ChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEEC
Confidence            3445556 999999999999999999999999999999999999873

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.00  E-value=9.8e-06  Score=69.82  Aligned_cols=72  Identities=26%  Similarity=0.450  Sum_probs=62.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCC-CchhchhhhCC--CCCCcEEEEEECCEEeeEEEe
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLG-CVGDHFSATFK--TSGLPAMLAYRGGEVVGNFVR  570 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~-~~~d~~~~~~~--i~~lPtllvyk~G~~~~~~vg  570 (612)
                      ...++++||++||+.|+.+.+.|..+++++. .+.|+.++.. ... .+...|.  +..+|+++++++|..+..+.+
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  107 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENP-DLAAEFGVAVRSIPTLLLFKDGKEVDRLVG  107 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCCh-HHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence            4589999999999999999999999999998 4999999985 444 6778888  899999999999988665554

>KOG0914|consensus

Probab=97.99  E-value=5.9e-06  Score=80.00  Aligned_cols=77  Identities=21%  Similarity=0.314  Sum_probs=66.0

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCchhchhhhCCC------CCCcEEEEEECCEEeeEE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVGDHFSATFKT------SGLPAMLAYRGGEVVGNF  568 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~d~~~~~~~i------~~lPtllvyk~G~~~~~~  568 (612)
                      +.+.-+|.||+.|.+.|+...|++.+|+.+|  +..||-|||..-.+ ..+++|.+      +.|||+++|++|+.+.+.
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfp-d~a~kfris~s~~srQLPT~ilFq~gkE~~Rr  221 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFP-DVAAKFRISLSPGSRQLPTYILFQKGKEVSRR  221 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCc-ChHHheeeccCcccccCCeEEEEccchhhhcC
Confidence            5567788999999999999999999999999  46999999988776 56688876      468999999999999987


Q ss_pred             Eecccc
Q psy12938        569 VRLGEE  574 (612)
Q Consensus       569 vg~~~~  574 (612)
                      =-+...
T Consensus       222 P~vd~~  227 (265)
T KOG0914|consen  222 PDVDVK  227 (265)
T ss_pred             cccccc
Confidence            666444

>KOG3550|consensus

Probab=97.96  E-value=7.8e-06  Score=74.46  Aligned_cols=56  Identities=29%  Similarity=0.491  Sum_probs=47.0

Q ss_pred             hHHhhh-------cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCCCChHH
Q psy12938         47 VAQLIR-------QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV  103 (612)
Q Consensus        47 i~~i~~-------G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~~~~~~  103 (612)
                      |+++++       |+|+.||++|+|||.++++-.|+.|+.+|+.+.+.|.|+| |..+....++
T Consensus       119 isriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvklvv-rytpkvleem  181 (207)
T KOG3550|consen  119 ISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVKLVV-RYTPKVLEEM  181 (207)
T ss_pred             EEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEEEEE-ecChHHHHHH
Confidence            667765       4899999999999999999999999999999999999988 4544333343

>KOG0911|consensus

Probab=97.94  E-value=2.5e-06  Score=83.41  Aligned_cols=77  Identities=12%  Similarity=0.162  Sum_probs=70.9

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      +...+++|||++||..|+.|+.+++.+|+..+++.|++++++..+ +++..+.+.+.|.+..+.+|+.+.++.+....
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~-eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~   92 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFP-EISNLIAVEAVPYFVFFFLGEKVDRLSGADPP   92 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhh-HHHHHHHHhcCceeeeeecchhhhhhhccCcH
Confidence            455799999999999999999999999999999999999999887 89999999999999999999999998887443

>KOG3571|consensus

Probab=97.93  E-value=9.5e-06  Score=86.84  Aligned_cols=65  Identities=32%  Similarity=0.445  Sum_probs=53.3

Q ss_pred             ceeEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        310 KLTLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ...|++|.|.-.. .=|||||+|    ..+..+|.||||.+|.+|||.+.||||.+||    ||-+++.+|+..
T Consensus       247 slnIITV~LnMe~vnfLGiSivg----qsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd  316 (626)
T KOG3571|consen  247 SLNIITVTLNMETVNFLGISIVG----QSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSND  316 (626)
T ss_pred             ceeEEEEEecccccccceeEeec----ccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCch
Confidence            3578888885555 349999999    2233478899999999999999999999999    899999887654

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=97.89  E-value=4.8e-05  Score=70.56  Aligned_cols=87  Identities=24%  Similarity=0.310  Sum_probs=66.8

Q ss_pred             CCceEEEEEeCC-CChhhhhhHHHHHHHHhhc--CCceEEEecCCCch--------------------hchhhhCCCC--
Q psy12938        497 RHITVIAHLSSP-SLPACRALNSSLAELSRSH--TNVKFVSVPLGCVG--------------------DHFSATFKTS--  551 (612)
Q Consensus       497 ~~~~Vvvhfy~~-~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~--------------------d~~~~~~~i~--  551 (612)
                      ++.++||+||+. ||++|+.-.+.|.+|+++|  ..+.|+-|..+..+                    ..+...|.+.  
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  106 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM  106 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence            455899999999 9999999999999999886  34888877654211                    1345688887  


Q ss_pred             -------CCcEE-EEEECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938        552 -------GLPAM-LAYRGGEVVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       552 -------~lPtl-lvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                             .+|++ ++-++|+++....|....     +.+++|..|
T Consensus       107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~-----~~~~~~~~l  146 (146)
T PF08534_consen  107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDPD-----EESDLEAVL  146 (146)
T ss_dssp             CCTTTTSSSSEEEEEETTSBEEEEEESSBTT-----SHHSHHHHH
T ss_pred             cccccCCeecEEEEEECCCEEEEEEeCCCCC-----CCCChhhcC
Confidence                   89976 566999999999887441     457777765

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>KOG1945|consensus

Probab=97.87  E-value=9.4e-06  Score=83.77  Aligned_cols=100  Identities=57%  Similarity=0.921  Sum_probs=91.3

Q ss_pred             cccccccccccccCCCCCCccchhhHHHHhhhccceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCch
Q psy12938        276 YVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGA  355 (612)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~  355 (612)
                      .+++-++.++|.+.+.+.+|.+.++.++.+++....+...+.+.++..|+|++++|+++|.+++....+||+.++.+|++
T Consensus        63 ~v~sa~~ve~~~~~n~~t~~~a~~~~~e~~r~~~~~~~~e~av~~~~~g~g~~~~~~~~gkk~~~~e~~~~~~sa~sg~~  142 (377)
T KOG1945|consen   63 QVFSAFSVEDYDRKNEDTDPVASCAEYELERRLERMDLFEVAVEKGAEGLGVSIIGMGVGKKSGLEELGIFVKSATSGGA  142 (377)
T ss_pred             hhhhhhhhhhccccCCCccccccCCcccccchhhccchhhhhccCCcCCCCccccccccchhccchhhcceeeccccccc
Confidence            47777889999999999999999999999999999999999999999999999999999999998889999999999999


Q ss_pred             hcccCCccccc----CCceeeeec
Q psy12938        356 AARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       356 a~~dgrl~~gD----vng~~~~g~  375 (612)
                      -+++|+..+-|    +.+.++.++
T Consensus       143 ~~r~g~~sved~~~s~~~k~lp~v  166 (377)
T KOG1945|consen  143 VHRDGRWSVEDVEVSVDSKSLPGV  166 (377)
T ss_pred             ccccccccccccccccccCCCCCc
Confidence            99999999999    455555554

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.83  E-value=2.5e-05  Score=86.49  Aligned_cols=88  Identities=10%  Similarity=0.141  Sum_probs=68.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHH---HHHhhcCCceEEEecCCCchh---chhhhCCCCCCcEEEEEE-CCEEeeEEE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLA---ELSRSHTNVKFVSVPLGCVGD---HFSATFKTSGLPAMLAYR-GGEVVGNFV  569 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~---~LA~~~~~vkF~ki~~~~~~d---~~~~~~~i~~lPtllvyk-~G~~~~~~v  569 (612)
                      +..+|+++|||+||-.||.+++..-   ..+.+.+++++.++|..+...   ++-++|..-++|++++|. +|+....+.
T Consensus       473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~  552 (569)
T COG4232         473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILT  552 (569)
T ss_pred             CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCc
Confidence            3458999999999999999998854   355667899999999874321   345789999999999998 888877766


Q ss_pred             eccccccCCCCHHHHHHHHHHC
Q psy12938        570 RLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       570 g~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      |+.+.       +.+++.|.+.
T Consensus       553 gf~~a-------~~~~~~l~~~  567 (569)
T COG4232         553 GFLTA-------DAFLEHLERA  567 (569)
T ss_pred             ceecH-------HHHHHHHHHh
Confidence            66444       6677777553

>KOG0191|consensus

Probab=97.77  E-value=7.5e-05  Score=81.07  Aligned_cols=87  Identities=16%  Similarity=0.311  Sum_probs=69.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      ....++|+||++||+.|+.+.+.+.+++..+.. +++..|+.+... .+..+|.+.+.||+.+|+.|   ...+.+.+  
T Consensus        46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~-~~~~~y~i~gfPtl~~f~~~---~~~~~~~~--  119 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK-DLCEKYGIQGFPTLKVFRPG---KKPIDYSG--  119 (383)
T ss_pred             cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH-HHHHhcCCccCcEEEEEcCC---CceeeccC--
Confidence            344799999999999999999999999999866 899999988776 78899999999999999999   22333322  


Q ss_pred             cCCCCHHHHHHHHHHC
Q psy12938        576 GEGYFVEDVEAFLVEA  591 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~  591 (612)
                        .-+.+.+..|+...
T Consensus       120 --~~~~~~~~~~~~~~  133 (383)
T KOG0191|consen  120 --PRNAESLAEFLIKE  133 (383)
T ss_pred             --cccHHHHHHHHHHh
Confidence              33446666666543

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=97.74  E-value=4.3e-05  Score=67.64  Aligned_cols=38  Identities=18%  Similarity=0.376  Sum_probs=33.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEe
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSV  535 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki  535 (612)
                      +.+||++||++||+.|+.+.+.|++++++|. .+.++.+
T Consensus        21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v   59 (114)
T cd02967          21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA   59 (114)
T ss_pred             CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence            4589999999999999999999999998884 5777766

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.73  E-value=0.00011  Score=60.04  Aligned_cols=70  Identities=16%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhh-----CCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT-----FKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~-----~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      |+-||++||+.|+.+.+.|+++.-     .|-.++.+..+ .....     ++...+|++ ++.+|..+.          
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~~~-----~~~~idi~~~~-~~~~~~~~~~~~~~~vP~i-~~~~g~~l~----------   64 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKLGA-----AYEWVDIEEDE-GAADRVVSVNNGNMTVPTV-KFADGSFLT----------   64 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHcCC-----ceEEEeCcCCH-hHHHHHHHHhCCCceeCEE-EECCCeEec----------
Confidence            567999999999999999988744     44456655332 23333     488999997 688887654          


Q ss_pred             CCCCHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLV  589 (612)
Q Consensus       577 ~~~~~~~lE~~L~  589 (612)
                       +.+..+|...|.
T Consensus        65 -~~~~~~~~~~l~   76 (77)
T TIGR02200        65 -NPSAAQVKAKLQ   76 (77)
T ss_pred             -CCCHHHHHHHhh
Confidence             233456666664

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.73  E-value=0.00021  Score=63.71  Aligned_cols=86  Identities=20%  Similarity=0.227  Sum_probs=60.6

Q ss_pred             CceEEEEEeCCCChhhhhhHH-HHH--HHHhhcC-CceEEEecCCC-chhchhhhCCCCCCcEEEEEE--CCEEeeEEEe
Q psy12938        498 HITVIAHLSSPSLPACRALNS-SLA--ELSRSHT-NVKFVSVPLGC-VGDHFSATFKTSGLPAMLAYR--GGEVVGNFVR  570 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~-~l~--~LA~~~~-~vkF~ki~~~~-~~d~~~~~~~i~~lPtllvyk--~G~~~~~~vg  570 (612)
                      ..+++|+|+++||..|+.|.. .|.  .+.+... +.-+++++++. .+..++..|.+..+|+++++.  +|+++.++.|
T Consensus        17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G   96 (114)
T cd02958          17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG   96 (114)
T ss_pred             CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence            559999999999999999975 332  2322221 33455566542 223577899999999999996  6999999988


Q ss_pred             ccccccCCCCHHHHHHHHHH
Q psy12938        571 LGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       571 ~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ....       +++...|.+
T Consensus        97 ~~~~-------~~f~~~L~~  109 (114)
T cd02958          97 NITP-------EDLLSQLIE  109 (114)
T ss_pred             CCCH-------HHHHHHHHH
Confidence            7433       566665554

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>KOG0912|consensus

Probab=97.72  E-value=3.8e-05  Score=78.00  Aligned_cols=69  Identities=14%  Similarity=0.234  Sum_probs=59.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhh----cCC--ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRS----HTN--VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGN  567 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~----~~~--vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~  567 (612)
                      ...|.|.|||+||+-+++|.|+|++-|++    ||+  +-+.+||.+.. +.++.+|.|.-.|||=+|+||.+..+
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia~ky~I~KyPTlKvfrnG~~~~r   87 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIADKYHINKYPTLKVFRNGEMMKR   87 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHhhhhccccCceeeeeeccchhhh
Confidence            45899999999999999999999998865    574  66778887765 37889999999999999999998873

>KOG3651|consensus

Probab=97.67  E-value=4.5e-05  Score=76.97  Aligned_cols=56  Identities=32%  Similarity=0.450  Sum_probs=48.5

Q ss_pred             EEEEeeCCCC-cceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938        315 GVELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG  376 (612)
Q Consensus       315 ~v~l~k~~~g-lG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~  376 (612)
                      +|+|.|+..+ +|+||.||   ..   ..+-+||-.|+.+.||++||||+.||    |||+++.|.+
T Consensus         7 ~v~ltKD~~nliGISIGGG---ap---yCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGkt   67 (429)
T KOG3651|consen    7 TVELTKDEKNLIGISIGGG---AP---YCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKT   67 (429)
T ss_pred             cEEEeeccccceeEEecCC---CC---cCCeEEEEEeccCCchhccCccccCCeeEEecceeecCcc
Confidence            3999999977 69999994   32   35579999999999999999999999    9999999953

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.65  E-value=0.00017  Score=54.69  Aligned_cols=61  Identities=26%  Similarity=0.438  Sum_probs=50.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchh--hhCCCCCCcEEEEEECC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFS--ATFKTSGLPAMLAYRGG  562 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~--~~~~i~~lPtllvyk~G  562 (612)
                      ++.||..||+.|+.+.+.|..++...+++.|..++.+.......  ..+....+|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence            46799999999999999999996666789999999876542222  37899999999999988

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.64  E-value=0.00029  Score=56.54  Aligned_cols=69  Identities=14%  Similarity=0.333  Sum_probs=50.6

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      |.-||++||+.|+.+.+.|++.     .+.|..+|.+..+   +.+...+++..+|+|+++  |+.   ++|+       
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~-------   64 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK-----GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF-------   64 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-----CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-------
Confidence            4679999999999999988763     5788888877543   123456899999999985  654   4443       


Q ss_pred             CCHHHHHHHH
Q psy12938        579 YFVEDVEAFL  588 (612)
Q Consensus       579 ~~~~~lE~~L  588 (612)
                       ..+.|+.+|
T Consensus        65 -~~~~i~~~i   73 (74)
T TIGR02196        65 -DPEKLDQLL   73 (74)
T ss_pred             -CHHHHHHHh
Confidence             346777765

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=97.62  E-value=0.00035  Score=68.28  Aligned_cols=85  Identities=19%  Similarity=0.341  Sum_probs=59.7

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC-------------------chhchhhhCCCCCCcEEE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC-------------------VGDHFSATFKTSGLPAML  557 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~-------------------~~d~~~~~~~i~~lPtll  557 (612)
                      ++.++|+.||++||+.|+.+.+.+.++.+++ +++++-|..+.                   ....+...|++..+|+.+
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~  151 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV  151 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence            3458999999999999999999999998765 34555443210                   011345678999999766


Q ss_pred             E-EECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        558 A-YRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       558 v-yk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      + -++|++...  |.      --+.+.+|.+|..
T Consensus       152 lID~~G~I~~~--g~------~~~~~~le~ll~~  177 (189)
T TIGR02661       152 LLDQDGKIRAK--GL------TNTREHLESLLEA  177 (189)
T ss_pred             EECCCCeEEEc--cC------CCCHHHHHHHHHH
Confidence            6 478988873  22      1245788888864

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>KOG3551|consensus

Probab=97.58  E-value=3.7e-05  Score=80.03  Aligned_cols=59  Identities=27%  Similarity=0.375  Sum_probs=52.6

Q ss_pred             EEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        315 GVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       315 ~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +|.+.|.. +||||||.|   |++   ++++|.|++|++|=||++.|-|..||    |||.++...+|..
T Consensus        87 ~V~V~K~d~gGLGISIKG---Gre---NkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHde  150 (506)
T KOG3551|consen   87 RVRVVKQDAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDE  150 (506)
T ss_pred             eeEEEEecCCcceEEeec---Ccc---cCCceehhHhccccccccccceeeccEEEEecchhhhhcchHH
Confidence            47777766 889999999   777   67899999999999999999999999    9999998877753

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=97.52  E-value=0.0007  Score=64.75  Aligned_cols=70  Identities=13%  Similarity=0.273  Sum_probs=56.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc-------h---------------------hchhhh
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV-------G---------------------DHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~-------~---------------------d~~~~~  547 (612)
                      ..++|+.||++||+.|....+.|.+|.++|+  +++|+.|..+..       +                     ..+...
T Consensus        25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  104 (171)
T cd02969          25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKA  104 (171)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHH
Confidence            4589999999999999999999999999997  699998865421       0                     122457


Q ss_pred             CCCCCCcEEEEE-ECCEEeeE
Q psy12938        548 FKTSGLPAMLAY-RGGEVVGN  567 (612)
Q Consensus       548 ~~i~~lPtllvy-k~G~~~~~  567 (612)
                      |.+...|+++++ ++|+++..
T Consensus       105 ~~v~~~P~~~lid~~G~v~~~  125 (171)
T cd02969         105 YGAACTPDFFLFDPDGKLVYR  125 (171)
T ss_pred             cCCCcCCcEEEECCCCeEEEe
Confidence            889999999999 68988764

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.51  E-value=0.00015  Score=66.30  Aligned_cols=86  Identities=12%  Similarity=0.155  Sum_probs=54.7

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHH------HHHHhhcCCceEE--EecCCCchhchhhhCCCCCCcEEEEE-ECCEEeeE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSL------AELSRSHTNVKFV--SVPLGCVGDHFSATFKTSGLPAMLAY-RGGEVVGN  567 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l------~~LA~~~~~vkF~--ki~~~~~~d~~~~~~~i~~lPtllvy-k~G~~~~~  567 (612)
                      ...+|+|.||++||+.|+.|+..+      .+++++    .|+  +++++....... . ....+||+++| .+|+++.+
T Consensus        22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~----~Fv~V~l~~d~td~~~~-~-~g~~vPtivFld~~g~vi~~   95 (130)
T cd02960          22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE----DFIMLNLVHETTDKNLS-P-DGQYVPRIMFVDPSLTVRAD   95 (130)
T ss_pred             CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh----CeEEEEEEeccCCCCcC-c-cCcccCeEEEECCCCCCccc
Confidence            345899999999999999998763      222322    455  555542210121 1 23689999999 88999999


Q ss_pred             EEeccccccCCCCHHHHHHHH
Q psy12938        568 FVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       568 ~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      ++|....---..++.+++.++
T Consensus        96 i~Gy~~~~~~~y~~~~~~~~~  116 (130)
T cd02960          96 ITGRYSNRLYTYEPADIPLLI  116 (130)
T ss_pred             ccccccCccceeCcCcHHHHH
Confidence            998743322234455554443

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.47  E-value=0.00049  Score=57.99  Aligned_cols=75  Identities=19%  Similarity=0.363  Sum_probs=55.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCC--CCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFK--TSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~--i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      |+-|+.+||+.|+.....|++|+.++..+.|..+|.+..+   +++...+.  ...+|+++  .||+.++   |+     
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig---g~-----   72 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG---GC-----   72 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc---CH-----
Confidence            5678999999999999999999998888888888876421   13433333  47899975  6998765   22     


Q ss_pred             CCCCHHHHHHHHHHC
Q psy12938        577 EGYFVEDVEAFLVEA  591 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~  591 (612)
                           ++|.+++.++
T Consensus        73 -----~~~~~~~~~~   82 (85)
T PRK11200         73 -----TDFEAYVKEN   82 (85)
T ss_pred             -----HHHHHHHHHh
Confidence                 7777777654

>KOG3549|consensus

Probab=97.45  E-value=0.00029  Score=72.46  Aligned_cols=47  Identities=26%  Similarity=0.365  Sum_probs=43.0

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      -+.|.|-+||-||.|||..+.+.+|++++++||++++.|+|+|.-.+
T Consensus        94 d~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeVtlTV~~lr  140 (505)
T KOG3549|consen   94 DITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEVTLTVKHLR  140 (505)
T ss_pred             hhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEEEEEeHhhh
Confidence            34689999999999999999999999999999999999999996543

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.43  E-value=0.0011  Score=54.73  Aligned_cols=74  Identities=22%  Similarity=0.347  Sum_probs=54.1

Q ss_pred             EEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHH
Q psy12938        503 AHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVE  582 (612)
Q Consensus       503 vhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~  582 (612)
                      |.++.++|+.|..+...+++++..+. +++--++....+ .+ .+|++..+|++++  ||+++  |.|      .--+.+
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~-~~-~~ygv~~vPalvI--ng~~~--~~G------~~p~~~   69 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFE-EI-EKYGVMSVPALVI--NGKVV--FVG------RVPSKE   69 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHH-HH-HHTT-SSSSEEEE--TTEEE--EES------S--HHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHH-HH-HHcCCCCCCEEEE--CCEEE--EEe------cCCCHH
Confidence            44578889999999999999999995 766556666654 56 9999999999955  88755  455      122337


Q ss_pred             HHHHHHH
Q psy12938        583 DVEAFLV  589 (612)
Q Consensus       583 ~lE~~L~  589 (612)
                      .|+.+|.
T Consensus        70 el~~~l~   76 (76)
T PF13192_consen   70 ELKELLE   76 (76)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            7877763

...

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=97.40  E-value=0.00066  Score=68.57  Aligned_cols=39  Identities=10%  Similarity=0.081  Sum_probs=35.1

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL  537 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~  537 (612)
                      .+|||+||++||+.|+...+.|.+|.++|.  ++.|+-|+.
T Consensus       100 K~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~  140 (236)
T PLN02399        100 KVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC  140 (236)
T ss_pred             CeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            489999999999999999999999999995  488888874

>PTZ00056 glutathione peroxidase; Provisional

Probab=97.40  E-value=0.00051  Score=67.72  Aligned_cols=40  Identities=8%  Similarity=0.142  Sum_probs=35.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL  537 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~  537 (612)
                      +.+|+|+||++||++|+.-.+.|..|.++|.  ++.|+-|+.
T Consensus        39 Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~   80 (199)
T PTZ00056         39 NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT   80 (199)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence            4489999999999999999999999999995  488988864

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.39  E-value=0.00022  Score=59.71  Aligned_cols=61  Identities=18%  Similarity=0.368  Sum_probs=43.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHH---HHHHhh-cCCceEEEecCCCchhchhhhCCCCCCcEEEEEE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSL---AELSRS-HTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR  560 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~-~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk  560 (612)
                      +.+|+|.|+++||+.|+.|+..+   ..+.+. -.+.-+++++.+......  .+...++|+++++.
T Consensus        17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~~~~P~~~~ld   81 (82)
T PF13899_consen   17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDRQGYPTFFFLD   81 (82)
T ss_dssp             TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHHCSSSEEEEEE
T ss_pred             CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCCccCCEEEEeC
Confidence            45899999999999999998876   344442 245778888887543122  33336799999974

...

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=97.33  E-value=0.00032  Score=68.04  Aligned_cols=77  Identities=10%  Similarity=0.028  Sum_probs=54.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhh-cCCceE---EEecCCC-----------------------------chhc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRS-HTNVKF---VSVPLGC-----------------------------VGDH  543 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~-~~~vkF---~ki~~~~-----------------------------~~d~  543 (612)
                      .+...+|+|||.||++|+.=.|.|..|+++ ++--||   .-|+.+.                             .+ .
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g-~  136 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKG-A  136 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcc-h
Confidence            455899999999999999999999999864 333111   2222221                             11 2


Q ss_pred             hhhhCCCCCCcEE--EEEECCEEeeEEEecccc
Q psy12938        544 FSATFKTSGLPAM--LAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       544 ~~~~~~i~~lPtl--lvyk~G~~~~~~vg~~~~  574 (612)
                      +...|.+.++|+.  ++=++|+++..+.|....
T Consensus       137 v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~  169 (184)
T TIGR01626       137 VKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSD  169 (184)
T ss_pred             HHHhcCCCCCCceEEEECCCCcEEEEEeCCCCH
Confidence            3457888888554  666999999999996433

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG0191|consensus

Probab=97.32  E-value=0.00033  Score=76.08  Aligned_cols=85  Identities=13%  Similarity=0.252  Sum_probs=67.0

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhc---CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE-eeEEEecccc
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV-VGNFVRLGEE  574 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~-~~~~vg~~~~  574 (612)
                      ...+|-||+|||..|+.|.+.++++|..+   ..+++.+++++... .+...+.+...||+++|+.|.. ....      
T Consensus       163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~-~~~~~~~v~~~Pt~~~f~~~~~~~~~~------  235 (383)
T KOG0191|consen  163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHK-SLASRLEVRGYPTLKLFPPGEEDIYYY------  235 (383)
T ss_pred             cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHH-HHhhhhcccCCceEEEecCCCcccccc------
Confidence            35788889999999999999999999877   46899999987443 6778999999999999999998 2222      


Q ss_pred             ccCCCCHHHHHHHHHHC
Q psy12938        575 LGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~  591 (612)
                       ...-+.+.+..|+...
T Consensus       236 -~~~R~~~~i~~~v~~~  251 (383)
T KOG0191|consen  236 -SGLRDSDSIVSFVEKK  251 (383)
T ss_pred             -cccccHHHHHHHHHhh
Confidence             2233457777777644

>KOG3605|consensus

Probab=97.31  E-value=0.0011  Score=73.32  Aligned_cols=45  Identities=27%  Similarity=0.431  Sum_probs=38.2

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCC--CceEEEEe
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIG   93 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~--~~v~l~v~   93 (612)
                      +...|.|-+||+|++|||.+|.|+.+..+..+||+..  -.|+|.|.
T Consensus       686 AarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV  732 (829)
T KOG3605|consen  686 AARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIV  732 (829)
T ss_pred             hhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEe
Confidence            3446799999999999999999999999999999975  34666665

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=97.28  E-value=0.00078  Score=74.26  Aligned_cols=92  Identities=23%  Similarity=0.293  Sum_probs=64.6

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHh--cCCCeEEEEEeecCCCC----------ch------h----------------
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLR--NTSGLVRFLIGREKDPV----------NS------E----------------   46 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk--~~~~~v~l~v~r~~~~~----------~~------~----------------   46 (612)
                      +||.|++|||..+.+.  .+....|.  ..+..+.|+|.|.....          ..      .                
T Consensus       277 ~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~lGi~~~~l~~~~~~~  354 (428)
T TIGR02037       277 AGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQASSSNPFLGLTVANLSPEIRKE  354 (428)
T ss_pred             CCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCccccccccccceEEecCCHHHHHH
Confidence            5999999999999865  34444444  35678888888752110          00      0                


Q ss_pred             -----------hHHhhh------cccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938         47 -----------VAQLIR------QSLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK   96 (612)
Q Consensus        47 -----------i~~i~~------G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~   96 (612)
                                 |.++..      .+|++||.|++|||+.+.  +.++..++|+.  .+..+.|+|.|..
T Consensus       355 ~~l~~~~~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~--s~~d~~~~l~~~~~g~~v~l~v~R~g  421 (428)
T TIGR02037       355 LRLKGDVKGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVS--SVAELRKVLDRAKKGGRVALLILRGG  421 (428)
T ss_pred             cCCCcCcCceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCEEEEEEEECC
Confidence                       111111      169999999999999997  67788888876  4688999998853

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=97.26  E-value=0.00053  Score=56.79  Aligned_cols=56  Identities=38%  Similarity=0.609  Sum_probs=45.7

Q ss_pred             EEEEeeC-CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        315 GVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       315 ~v~l~k~-~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .|.|.+. ..+|||.+.+   +...   ..|++|+.|.++++|++.| |++||    +||..+..+++
T Consensus         3 ~~~l~~~~~~~~G~~~~~---~~~~---~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~   63 (82)
T cd00992           3 TVTLRKDPGGGLGFSLRG---GKDS---GGGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTH   63 (82)
T ss_pred             EEEEEeCCCCCcCEEEeC---cccC---CCCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCH
Confidence            4778887 5789999998   3332   3589999999999999966 99999    89999986544

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG0609|consensus

Probab=97.23  E-value=0.00014  Score=79.32  Aligned_cols=80  Identities=29%  Similarity=0.378  Sum_probs=65.4

Q ss_pred             CCCHHHHHHHHhcCCCeEEEEEeecCCCCchhhHHhhhc-------ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCc
Q psy12938         15 GVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQ-------SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGL   87 (612)
Q Consensus        15 ~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~i~~i~~G-------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~   87 (612)
                      .+.--..|++.|+++.+...||++.... ...+++|++|       .|++||+|++|||.++.+.+..++..+|+++.|.
T Consensus       119 ~~~~vriv~i~k~~~eplG~Tik~~e~~-~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~  197 (542)
T KOG0609|consen  119 PVEAVRIVRIVKNTGEPLGATIRVEEDT-KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGS  197 (542)
T ss_pred             ccceeEEEEEeecCCCccceEEEeccCC-ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCc
Confidence            3333455666778888888888887654 4447777764       8999999999999999999999999999999999


Q ss_pred             eEEEEeec
Q psy12938         88 VRFLIGRE   95 (612)
Q Consensus        88 v~l~v~R~   95 (612)
                      ++|+|.-.
T Consensus       198 itfkiiP~  205 (542)
T KOG0609|consen  198 ITFKIIPS  205 (542)
T ss_pred             EEEEEccc
Confidence            99999743

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=97.18  E-value=0.00073  Score=63.44  Aligned_cols=39  Identities=8%  Similarity=0.030  Sum_probs=34.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL  537 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~  537 (612)
                      +.+||+.||++||+ |+.--+.|.+|.++|.  ++.|+-|..
T Consensus        22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~   62 (152)
T cd00340          22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC   62 (152)
T ss_pred             CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence            45899999999999 9999999999999995  588888853

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=97.18  E-value=0.00079  Score=55.88  Aligned_cols=57  Identities=35%  Similarity=0.560  Sum_probs=46.2

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.+.+....|||.+..   +...   ..|+||..|.++++|++.| |++||    |||..+.++.+
T Consensus         3 ~~~~~~~~~~~~G~~~~~---~~~~---~~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~   63 (85)
T smart00228        3 RLVELEKGGGGLGFSLVG---GKDE---GGGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTH   63 (85)
T ss_pred             EEEEEEECCCcccEEEEC---CCCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            347777777789999988   3221   1589999999999999999 99999    89998887544

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>PLN02412 probable glutathione peroxidase

Probab=97.17  E-value=0.002  Score=61.63  Aligned_cols=40  Identities=8%  Similarity=0.018  Sum_probs=34.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL  537 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~  537 (612)
                      ..+|||+||++||+.|+.-.+.|.+|.++|.  ++.|+-|+.
T Consensus        29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~   70 (167)
T PLN02412         29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC   70 (167)
T ss_pred             CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence            3589999999999999988889999999996  488888864

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=97.17  E-value=0.0018  Score=71.84  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=63.4

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCc---------------------------------hhh
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN---------------------------------SEV   47 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~---------------------------------~~i   47 (612)
                      +||.|++|||..+.+...-...-..+..+..+.++|.|+.....                                 ..|
T Consensus       146 ~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l~~~~~~~~~~~~~~~~~lGl~~~~~~~~~vV  225 (449)
T PRK10779        146 PGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTLDLRHWAFEPDKQDPVSSLGIRPRGPQIEPVL  225 (449)
T ss_pred             CCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEecccccccCccccchhhcccccccCCCcCcEE
Confidence            59999999999998764322222233455678888888632100                                 002


Q ss_pred             HHhhhc------ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeecC
Q psy12938         48 AQLIRQ------SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGREK   96 (612)
Q Consensus        48 ~~i~~G------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~~   96 (612)
                      ..+..|      +|++||+|++|||+.+.  +.++...+++. .+..+.++|.|..
T Consensus       226 ~~V~~~SpA~~AGL~~GDvIl~Ing~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g  279 (449)
T PRK10779        226 AEVQPNSAASKAGLQAGDRIVKVDGQPLT--QWQTFVTLVRDNPGKPLALEIERQG  279 (449)
T ss_pred             EeeCCCCHHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCCEEEEEEEECC
Confidence            222222      69999999999999997  66777777766 4568899998753

>smart00594 UAS UAS domain

Probab=97.11  E-value=0.002  Score=58.26  Aligned_cols=88  Identities=19%  Similarity=0.238  Sum_probs=53.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHH-HHH--HHhhcC-CceEEEecCC-CchhchhhhCCCCCCcEEEEE-ECC-EEeeEEEe
Q psy12938        498 HITVIAHLSSPSLPACRALNSS-LAE--LSRSHT-NVKFVSVPLG-CVGDHFSATFKTSGLPAMLAY-RGG-EVVGNFVR  570 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~-l~~--LA~~~~-~vkF~ki~~~-~~~d~~~~~~~i~~lPtllvy-k~G-~~~~~~vg  570 (612)
                      ..+++|+|+++||..|+.|+.. |..  +.+... +.-+.+++++ ..+..++..|++.++|+++++ .+| .....+++
T Consensus        27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~  106 (122)
T smart00594       27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVG  106 (122)
T ss_pred             cCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEec
Confidence            3489999999999999999764 221  222221 3344456654 222367899999999999999 444 22222332


Q ss_pred             ccccccCCCCHHHHHHHH
Q psy12938        571 LGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       571 ~~~~~g~~~~~~~lE~~L  588 (612)
                      .   .....+.++|..+|
T Consensus       107 ~---~~G~~~~~~l~~~l  121 (122)
T smart00594      107 V---VEGEISPEELMTFL  121 (122)
T ss_pred             c---ccCCCCHHHHHHhh
Confidence            2   11234557777666

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.08  E-value=0.0012  Score=54.78  Aligned_cols=62  Identities=19%  Similarity=0.352  Sum_probs=46.4

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----hchhhhCCCCCCcEEEEEECCEEee
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----DHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |+-|+++||+.|+.+.+.|.++.-. +...|+.|+.+...    +.+...+....+|++  |-+|+.++
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ig   66 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFIG   66 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence            4679999999999999999998732 23677887765322    135566788899997  66887755

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG3551|consensus

Probab=97.05  E-value=0.00043  Score=72.29  Aligned_cols=48  Identities=21%  Similarity=0.381  Sum_probs=43.2

Q ss_pred             hHHhhhc-------ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEee
Q psy12938         47 VAQLIRQ-------SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR   94 (612)
Q Consensus        47 i~~i~~G-------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R   94 (612)
                      |+.|..|       -|.+||-||+|||.++..+||+|||+.||.++..|.|.|.-
T Consensus       114 ISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~levKy  168 (506)
T KOG3551|consen  114 ISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVLLEVKY  168 (506)
T ss_pred             hhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceeeeeeee
Confidence            6666654       89999999999999999999999999999999999988853

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=96.99  E-value=0.0028  Score=53.71  Aligned_cols=75  Identities=17%  Similarity=0.342  Sum_probs=55.0

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCC--CCCcEEEEEECCEEeeEEEecccccc
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKT--SGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i--~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      |+-|+.+||+.|+.+...|..+..+++.+.|..++.+..+   ..+.+.+.-  ..+|+++  -||+.++.   .     
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~igG---~-----   71 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHVGG---C-----   71 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEecC---H-----
Confidence            4568889999999999999999888888888887765311   134444443  7899994  58877542   2     


Q ss_pred             CCCCHHHHHHHHHHC
Q psy12938        577 EGYFVEDVEAFLVEA  591 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~  591 (612)
                           ++|+.++.++
T Consensus        72 -----~dl~~~~~~~   81 (86)
T TIGR02183        72 -----TDFEQLVKEN   81 (86)
T ss_pred             -----HHHHHHHHhc
Confidence                 7788888764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>TIGR00054 RIP metalloprotease RseP

Probab=96.91  E-value=0.0035  Score=68.95  Aligned_cols=92  Identities=16%  Similarity=0.255  Sum_probs=62.3

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCc---------------hhhHHhhh------cccCCCC
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN---------------SEVAQLIR------QSLQVND   59 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~---------------~~i~~i~~------G~L~~GD   59 (612)
                      +||.|++|||..+.+.  ++..+.+......+.+++.|+.....               ..+..+.+      .+|++||
T Consensus       148 ~GDvI~~vng~~v~~~--~dl~~~ia~~~~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~vV~~V~~~SpA~~aGL~~GD  225 (420)
T TIGR00054       148 PGDEILSVNGNKIPGF--KDVRQQIADIAGEPMVEILAERENWTFEVMKELIPRGPKIEPVLSDVTPNSPAEKAGLKEGD  225 (420)
T ss_pred             CCCEEEEECCEEcCCH--HHHHHHHHhhcccceEEEEEecCceEecccccceecCCCcCcEEEEECCCCHHHHcCCCCCC
Confidence            5999999999999866  34444433333667777766422111               01222222      2699999


Q ss_pred             EEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeecC
Q psy12938         60 QIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGREK   96 (612)
Q Consensus        60 ~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~~   96 (612)
                      +|++|||+.+.  +.++....++. .+..+.++|.|..
T Consensus       226 ~Iv~Vng~~V~--s~~dl~~~l~~~~~~~v~l~v~R~g  261 (420)
T TIGR00054       226 YIQSINGEKLR--SWTDFVSAVKENPGKSMDIKVERNG  261 (420)
T ss_pred             EEEEECCEECC--CHHHHHHHHHhCCCCceEEEEEECC
Confidence            99999999997  56788888876 4567899998753

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10942 serine endoprotease; Provisional

Probab=96.89  E-value=0.0034  Score=70.04  Aligned_cols=92  Identities=16%  Similarity=0.239  Sum_probs=64.5

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhc--CCCeEEEEEeecCCC---------C------chh-----------------
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREKDP---------V------NSE-----------------   46 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~--~~~~v~l~v~r~~~~---------~------~~~-----------------   46 (612)
                      .||.|++|||..+.+.  .+....|..  .+..+.|+|.|....         .      ...                 
T Consensus       331 ~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~~~~~~~~~~~~~lGl~g~~l~~~~~~~  408 (473)
T PRK10942        331 AGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQSSQNQVDSSNIFNGIEGAELSNKGGDK  408 (473)
T ss_pred             CCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCcCcccccccccccccceeeecccccCCC
Confidence            5899999999999865  444455543  356788877765211         0      000                 


Q ss_pred             ---hHHhhh------cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         47 ---VAQLIR------QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        47 ---i~~i~~------G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                         |..+..      .+|++||.|++|||+.+.  +.++..++++.....+.|+|.|..
T Consensus       409 gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~--s~~dl~~~l~~~~~~v~l~V~R~g  465 (473)
T PRK10942        409 GVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVK--NIAELRKILDSKPSVLALNIQRGD  465 (473)
T ss_pred             CeEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECC
Confidence               111111      169999999999999998  568888888887788999998854

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=96.89  E-value=0.001  Score=53.50  Aligned_cols=45  Identities=31%  Similarity=0.581  Sum_probs=38.3

Q ss_pred             CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        324 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       324 glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +|||.+.+   +.+     .+++|.+|.++++|++.| |++||    |||.++.+.++
T Consensus         2 ~~G~~~~~---~~~-----~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~   50 (70)
T cd00136           2 GLGFSIRG---GTE-----GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTL   50 (70)
T ss_pred             CccEEEec---CCC-----CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            69999998   222     489999999999999877 99999    89999988643

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PRK10139 serine endoprotease; Provisional

Probab=96.88  E-value=0.0032  Score=69.89  Aligned_cols=92  Identities=22%  Similarity=0.308  Sum_probs=65.3

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhc--CCCeEEEEEeecCCC---------Cch------------------------
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREKDP---------VNS------------------------   45 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~--~~~~v~l~v~r~~~~---------~~~------------------------   45 (612)
                      +||.|++|||..+.+.  .+....|..  .+..+.++|.|....         ...                        
T Consensus       310 ~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~  387 (455)
T PRK10139        310 AGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALQGATLSDGQLKD  387 (455)
T ss_pred             CCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCcccccccccccccccEeccccccc
Confidence            5999999999999865  555566653  566788888775210         000                        


Q ss_pred             -----hhHHhhhc------ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         46 -----EVAQLIRQ------SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        46 -----~i~~i~~G------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                           .|..+..|      +|++||+|++|||+.+.  +.++...+++.....+.|+|.|..
T Consensus       388 ~~~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~g  447 (455)
T PRK10139        388 GTKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGN  447 (455)
T ss_pred             CCCceEEEEeCCCChHHHcCCCCCCEEEEECCEEcC--CHHHHHHHHHhCCCeEEEEEEECC
Confidence                 01111111      79999999999999997  667888888876688999998853

>KOG3606|consensus

Probab=96.85  E-value=0.00074  Score=67.48  Aligned_cols=65  Identities=26%  Similarity=0.348  Sum_probs=51.2

Q ss_pred             EEEEeeCC--CCcceEEEeccCCC--CCCCC-ccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        315 GVELMKGA--EGLGLSIIGMGVGA--DAGLE-KLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       315 ~v~l~k~~--~glG~si~g~~~g~--~~~~~-~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +|.|.|-.  ..|||-|..|..-.  .++.+ -+||||++.+|||.|+.-|-|-++|    |||+.+.|.+..+
T Consensus       161 RVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQ  234 (358)
T KOG3606|consen  161 RVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQ  234 (358)
T ss_pred             heehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHH
Confidence            48888865  67999999842111  12222 3699999999999999999999999    9999999987644

>PF13728 TraF: F plasmid transfer operon protein

Probab=96.85  E-value=0.013  Score=58.40  Aligned_cols=92  Identities=13%  Similarity=0.048  Sum_probs=64.1

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCC--------chhchhhhCCCCCCcEEE
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGC--------VGDHFSATFKTSGLPAML  557 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~--------~~d~~~~~~~i~~lPtll  557 (612)
                      .++..+.    ..+-++.||.+.|+.|+.+.++|..+|.+|. .|..+.+|...        ....++++|.+...|+++
T Consensus       113 ~~l~~la----~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~  188 (215)
T PF13728_consen  113 KALKQLA----QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF  188 (215)
T ss_pred             HHHHHHh----hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence            4455543    3378999999999999999999999999994 46666666321        011467889999999999


Q ss_pred             EEECCEEeeEEEeccccccCCCCHHHHHHH
Q psy12938        558 AYRGGEVVGNFVRLGEELGEGYFVEDVEAF  587 (612)
Q Consensus       558 vyk~G~~~~~~vg~~~~~g~~~~~~~lE~~  587 (612)
                      +..-.......|+.+     -.+.++|++.
T Consensus       189 Lv~~~~~~~~pv~~G-----~~s~~~L~~r  213 (215)
T PF13728_consen  189 LVNPNTKKWYPVSQG-----FMSLDELEDR  213 (215)
T ss_pred             EEECCCCeEEEEeee-----cCCHHHHHHh
Confidence            887766444344441     1344555544

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=96.80  E-value=0.003  Score=50.68  Aligned_cols=40  Identities=28%  Similarity=0.411  Sum_probs=36.4

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCC-CceEEEE
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS-GLVRFLI   92 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~-~~v~l~v   92 (612)
                      ++|++||+|++|||.++.+.+++++..+|+... ..|+|++
T Consensus        29 ~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          29 AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            479999999999999999999999999999875 6788876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>KOG3549|consensus

Probab=96.80  E-value=0.0011  Score=68.33  Aligned_cols=59  Identities=27%  Similarity=0.370  Sum_probs=51.8

Q ss_pred             EEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        314 LGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       314 ~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+|.+.+.. +|||+||.|   |.++   +.+|.|++|.++-+|+..|.|-+||    |||+.+....|.
T Consensus        56 RtVtirRQ~vGGlGLSIKG---GaEH---n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~He  119 (505)
T KOG3549|consen   56 RTVTIRRQKVGGLGLSIKG---GAEH---NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHE  119 (505)
T ss_pred             eeEEEEeeecCcceeeecc---cccc---CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChH
Confidence            458888877 899999999   6663   5689999999999999999999999    999999887664

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=96.76  E-value=0.0072  Score=54.47  Aligned_cols=66  Identities=17%  Similarity=0.308  Sum_probs=44.8

Q ss_pred             CCceEEEEEeC-------CCChhhhhhHHHHHHHHhhcC-CceEEEecCCC--------chhchhhhCCCCCCcEEEEEE
Q psy12938        497 RHITVIAHLSS-------PSLPACRALNSSLAELSRSHT-NVKFVSVPLGC--------VGDHFSATFKTSGLPAMLAYR  560 (612)
Q Consensus       497 ~~~~Vvvhfy~-------~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~--------~~d~~~~~~~i~~lPtllvyk  560 (612)
                      .+.++++.|+.       +||+.|+...+++...-...| +..|+.+.+..        ++..-..+|.+.++|||+-|.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~   97 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWE   97 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECT
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEEC
Confidence            44578888885       599999999999999766665 69999887531        221122369999999999999


Q ss_pred             CC
Q psy12938        561 GG  562 (612)
Q Consensus       561 ~G  562 (612)
                      ++
T Consensus        98 ~~   99 (119)
T PF06110_consen   98 TG   99 (119)
T ss_dssp             SS
T ss_pred             CC
Confidence            88

; PDB: 1V9W_A 1WOU_A.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=96.75  E-value=0.0087  Score=54.73  Aligned_cols=77  Identities=12%  Similarity=0.232  Sum_probs=58.2

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch--------------------hchhhhCCCCCC-
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG--------------------DHFSATFKTSGL-  553 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~--------------------d~~~~~~~i~~l-  553 (612)
                      +.++++.|| ..||+.|...-+.|..+++++.  ++.|+-|..+...                    ..+...|++... 
T Consensus        23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  102 (140)
T cd03017          23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK  102 (140)
T ss_pred             CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence            447899999 5899999999999999988874  5888887654211                    123456777777 


Q ss_pred             --------cEEEEEE-CCEEeeEEEecccc
Q psy12938        554 --------PAMLAYR-GGEVVGNFVRLGEE  574 (612)
Q Consensus       554 --------Ptllvyk-~G~~~~~~vg~~~~  574 (612)
                              |+.+++. +|+++..+.|....
T Consensus       103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~  132 (140)
T cd03017         103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPK  132 (140)
T ss_pred             ccccCCcceeEEEECCCCEEEEEEecCCcc
Confidence                    8888885 79999999887543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=96.74  E-value=0.0056  Score=57.46  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=59.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC--------CC---chhchhh----hCCC----------
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL--------GC---VGDHFSA----TFKT----------  550 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~--------~~---~~d~~~~----~~~i----------  550 (612)
                      +.+|||.||++||+.|+.--+.|.++.++|.  ++.|+-|+.        +.   ...++.+    .|++          
T Consensus        22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~~  101 (153)
T TIGR02540        22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSE  101 (153)
T ss_pred             CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCCC
Confidence            4478899999999999999999999999995  588888763        11   1111111    1221          


Q ss_pred             ------------CCCc-----EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        551 ------------SGLP-----AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       551 ------------~~lP-----tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                                  ..+|     |+|+=++|+++..+.|-.       +.++|+..|.+
T Consensus       102 ~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~-------~~~~l~~~i~~  151 (153)
T TIGR02540       102 AEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEE-------PVEEIRPEITA  151 (153)
T ss_pred             CCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCC-------CHHHHHHHHHH
Confidence                        1367     688889999999887753       33677776643

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG4371|consensus

Probab=96.67  E-value=0.0021  Score=74.53  Aligned_cols=96  Identities=23%  Similarity=0.360  Sum_probs=81.9

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCchh----------------------------------
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE----------------------------------   46 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~----------------------------------   46 (612)
                      +||-|+.|||+-+++.-|.+|+..++..+..|.|-|.|+++.....                                  
T Consensus      1189 ~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~ 1268 (1332)
T KOG4371|consen 1189 VGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQHHASSTSASAPLISVMLLKKPMATLGLSLAKRTM 1268 (1332)
T ss_pred             hhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCcccccchhhhhhcccchhhhheeeecccccccccccccCc
Confidence            5899999999999999999999999999999999999997543221                                  


Q ss_pred             ------------hHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         47 ------------VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        47 ------------i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                                  .++-..|++++||++....|+++.+.+.-+....++-..++|.+++.|+.
T Consensus      1269 s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~~p~~~~~~~~q 1330 (1332)
T KOG4371|consen 1269 SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQGPVQITVTREQ 1330 (1332)
T ss_pred             CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhccCchhheehhhh
Confidence                        11112358999999999999999999999999999988899999998764

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=96.61  E-value=0.014  Score=53.87  Aligned_cols=75  Identities=9%  Similarity=0.091  Sum_probs=56.5

Q ss_pred             CceEEEEEeCCC-ChhhhhhHHHHHHHHhhcCCceEEEecCCCch----------------------hchhhhCCCCC--
Q psy12938        498 HITVIAHLSSPS-LPACRALNSSLAELSRSHTNVKFVSVPLGCVG----------------------DHFSATFKTSG--  552 (612)
Q Consensus       498 ~~~Vvvhfy~~~-~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----------------------d~~~~~~~i~~--  552 (612)
                      ..+||+.||+.| |+.|+.-.+.|.++.++|+++.|+-|..+...                      ..+...|.+..  
T Consensus        26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~  105 (143)
T cd03014          26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKD  105 (143)
T ss_pred             CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeecc
Confidence            348999999998 69999999999999999999999998875310                      01223444432  


Q ss_pred             ----CcEEEEE-ECCEEeeEEEecc
Q psy12938        553 ----LPAMLAY-RGGEVVGNFVRLG  572 (612)
Q Consensus       553 ----lPtllvy-k~G~~~~~~vg~~  572 (612)
                          .|+.++. ++|+++...+|..
T Consensus       106 ~~~~~~~~~iid~~G~I~~~~~~~~  130 (143)
T cd03014         106 LGLLARAVFVIDENGKVIYVELVPE  130 (143)
T ss_pred             CCccceEEEEEcCCCeEEEEEECCC
Confidence                4677766 5899999888763

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.59  E-value=0.011  Score=47.12  Aligned_cols=51  Identities=18%  Similarity=0.302  Sum_probs=35.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhC----CCCCCcEEEE
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATF----KTSGLPAMLA  558 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~----~i~~lPtllv  558 (612)
                      |+-|+.+||+.|+.+...|.+.     .+.|..++.+..+ ...+.|    +...+|++++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~-~~~~~~~~~~~~~~vP~i~~   56 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDP-EALEELKKLNGYRSVPVVVI   56 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCH-HHHHHHHHHcCCcccCEEEE
Confidence            4668899999999999888774     4566666665332 222223    6789999976

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=96.50  E-value=0.023  Score=54.33  Aligned_cols=89  Identities=10%  Similarity=0.045  Sum_probs=60.6

Q ss_pred             CceEEEEEeCCC-ChhhhhhHHHHHHHHhhcCCceEEEecCCCch---------------------h-chhhhCCCCCCc
Q psy12938        498 HITVIAHLSSPS-LPACRALNSSLAELSRSHTNVKFVSVPLGCVG---------------------D-HFSATFKTSGLP  554 (612)
Q Consensus       498 ~~~Vvvhfy~~~-~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---------------------d-~~~~~~~i~~lP  554 (612)
                      +.+||++||+.| |++|..--+.|.++++++.+++++-|..+...                     . .++..|++...|
T Consensus        44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~  123 (167)
T PRK00522         44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAE  123 (167)
T ss_pred             CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecc
Confidence            448999999999 99999999999999999878888888655310                     1 234456665555


Q ss_pred             ---------EEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938        555 ---------AMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       555 ---------tllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                               +.++. ++|+++..+++..  .......+.+.++|
T Consensus       124 ~~~~g~~~r~tfvId~~G~I~~~~~~~~--~~~~~~~~~~l~~l  165 (167)
T PRK00522        124 GPLKGLLARAVFVLDENNKVVYSELVPE--ITNEPDYDAALAAL  165 (167)
T ss_pred             cccCCceeeEEEEECCCCeEEEEEECCC--cCCCCCHHHHHHHh
Confidence                     54444 6888887776542  22334455555555

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=96.50  E-value=0.0062  Score=50.32  Aligned_cols=40  Identities=38%  Similarity=0.601  Sum_probs=36.8

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEE
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI   92 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v   92 (612)
                      .+|++||+|++|||..+..+++.++..+|+...+.++|++
T Consensus        42 ~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992          42 GGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             CCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence            3799999999999999999999999999999888888876

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=96.46  E-value=0.0074  Score=49.94  Aligned_cols=42  Identities=36%  Similarity=0.545  Sum_probs=38.5

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||..+.++++.+.+.+++.++..+.|++.|.
T Consensus        43 gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i~r~   84 (85)
T smart00228       43 GLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTVLRG   84 (85)
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            399999999999999999999999999998877999998774

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>PHA03050 glutaredoxin; Provisional

Probab=96.43  E-value=0.0042  Score=55.13  Aligned_cols=90  Identities=19%  Similarity=0.258  Sum_probs=59.5

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC----CchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG----CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~----~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      -|+-|..+||+.|+.....|+++.-+++....+.|+..    ...+.+.+.-....+|++  |-||+.++.+--+.... 
T Consensus        14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g~~iGG~ddl~~l~-   90 (108)
T PHA03050         14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGKTSIGGYSDLLEID-   90 (108)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECCEEEeChHHHHHHH-
Confidence            36668999999999999999998665555555555531    112345555677899998  66788776442222211 


Q ss_pred             CCCCHHHHHHHHHHCCcccC
Q psy12938        577 EGYFVEDVEAFLVEAGLLRA  596 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~g~l~~  596 (612)
                         ....|+..|...|+++.
T Consensus        91 ---~~g~L~~~l~~~~~~~~  107 (108)
T PHA03050         91 ---NMDALGDILSSIGVLRT  107 (108)
T ss_pred             ---HcCCHHHHHHHcccccc
Confidence               11357888888888753

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=96.39  E-value=0.023  Score=53.19  Aligned_cols=88  Identities=13%  Similarity=0.164  Sum_probs=59.3

Q ss_pred             CceEEEEEeCC-CChhhhhhHHHHHHHHhhc--CCceEEEecCCCch--------------------hchhhhCCCCCC-
Q psy12938        498 HITVIAHLSSP-SLPACRALNSSLAELSRSH--TNVKFVSVPLGCVG--------------------DHFSATFKTSGL-  553 (612)
Q Consensus       498 ~~~Vvvhfy~~-~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~--------------------d~~~~~~~i~~l-  553 (612)
                      ..++||+||+. ||+.|....+.|.++++++  .++.|+.|..+...                    ..+...|.+... 
T Consensus        30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  109 (154)
T PRK09437         30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK  109 (154)
T ss_pred             CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence            34799999986 6888999988899888887  35888888754211                    123456766543 


Q ss_pred             -----------cEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        554 -----------PAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       554 -----------Ptllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                                 |+.+++ ++|+++..+.|+...  +  ..++++++|.
T Consensus       110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~--~--~~~~~~~~~~  153 (154)
T PRK09437        110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS--N--HHDVVLDYLK  153 (154)
T ss_pred             ccccccccCcceEEEEECCCCEEEEEEcCCCcc--h--hHHHHHHHHh
Confidence                       555555 799999999887432  1  2444555543

>KOG1892|consensus

Probab=96.37  E-value=0.0037  Score=71.76  Aligned_cols=48  Identities=33%  Similarity=0.555  Sum_probs=44.2

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      ++-.+|||+.||+||.|||++|.|.|++.|+.+|..++..|+|.|.+.
T Consensus       972 aAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg~vV~leVaKq 1019 (1629)
T KOG1892|consen  972 AADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTGNVVHLEVAKQ 1019 (1629)
T ss_pred             ccccccccccCceeeeecCcccccccHHHHHHHHhccCCeEEEehhhh
Confidence            444578999999999999999999999999999999999999999764

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=96.37  E-value=0.0091  Score=53.23  Aligned_cols=42  Identities=19%  Similarity=0.238  Sum_probs=37.5

Q ss_pred             CceEEEEEeCC-CChhhhhhHHHHHHHHhhcC--CceEEEecCCC
Q psy12938        498 HITVIAHLSSP-SLPACRALNSSLAELSRSHT--NVKFVSVPLGC  539 (612)
Q Consensus       498 ~~~Vvvhfy~~-~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~  539 (612)
                      +.++|+.||+. ||+.|+.-.+.|.++..+|.  +++|+-|..+.
T Consensus        25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~   69 (124)
T PF00578_consen   25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDD   69 (124)
T ss_dssp             TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSS
T ss_pred             CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccc
Confidence            45899999999 99999999999999999886  79999988764

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=96.32  E-value=0.049  Score=55.70  Aligned_cols=84  Identities=8%  Similarity=0.034  Sum_probs=61.6

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch--------hchhhhCCCCCCcEEEEEECCEEeeEEEe
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG--------DHFSATFKTSGLPAMLAYRGGEVVGNFVR  570 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~--------d~~~~~~~i~~lPtllvyk~G~~~~~~vg  570 (612)
                      +-++.||...|+.|+.+.++|..+|++|. .|..+.+|..-.+        ...+++|.+...|++++..-......-|+
T Consensus       152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~  231 (256)
T TIGR02739       152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLA  231 (256)
T ss_pred             eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEe
Confidence            89999999999999999999999999995 5777777754221        13567899999999887766544443455


Q ss_pred             ccccccCCCCHHHHHHHH
Q psy12938        571 LGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       571 ~~~~~g~~~~~~~lE~~L  588 (612)
                      ++     -++.++|...+
T Consensus       232 ~G-----~iS~deL~~Ri  244 (256)
T TIGR02739       232 YG-----FISQDELKERI  244 (256)
T ss_pred             ec-----cCCHHHHHHHH
Confidence            41     24557776554

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.28  E-value=0.012  Score=48.72  Aligned_cols=60  Identities=23%  Similarity=0.381  Sum_probs=43.5

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----hchhhhCCCCCCcEEEEEECCEEee
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----DHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |+-|+.+||+.|+.+...|+++...|   +++.++.+...    +.+.+..+...+|++  |-+|+.++
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ig   65 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVKP---AVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFIG   65 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCCc---EEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEEc
Confidence            46789999999999999999987744   56666654321    124444577888986  77888765

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PTZ00256 glutathione peroxidase; Provisional

Probab=96.16  E-value=0.021  Score=55.44  Aligned_cols=38  Identities=13%  Similarity=0.152  Sum_probs=31.5

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL  537 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~  537 (612)
                      +|++.+|++||++|+.--+.|.+|.++|.  ++.|+-|+.
T Consensus        43 vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~   82 (183)
T PTZ00256         43 AIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC   82 (183)
T ss_pred             EEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence            34455699999999999999999999985  588888863

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=96.15  E-value=0.062  Score=51.48  Aligned_cols=98  Identities=12%  Similarity=0.047  Sum_probs=67.3

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------------hchhhh
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------------DHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------------d~~~~~  547 (612)
                      +.+||+.|| +.||+.|..-.+.|..++++|.  ++.++-|..+...                           ..++..
T Consensus        29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~  108 (173)
T cd03015          29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD  108 (173)
T ss_pred             CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence            358999999 7999999999999999999884  4777777543210                           012345


Q ss_pred             CCCC------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCCC
Q psy12938        548 FKTS------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGG  598 (612)
Q Consensus       548 ~~i~------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~~  598 (612)
                      |.+.      .+|+.+++ ++|+++..+++....   +-..++|...|...-.+..+.
T Consensus       109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~---~~~~~~il~~l~~~~~~~~~~  163 (173)
T cd03015         109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPV---GRSVDETLRVLDALQFVEEHG  163 (173)
T ss_pred             hCCccccCCceeeEEEEECCCCeEEEEEecCCCC---CCCHHHHHHHHHHhhhhhhcC
Confidence            6664      45677666 599999988875332   234577777776655554444

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=96.04  E-value=0.0059  Score=51.00  Aligned_cols=44  Identities=25%  Similarity=0.457  Sum_probs=35.0

Q ss_pred             CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        324 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       324 glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      +||+.+...   .+    ..|++|.+|.+++||++.| |++||    +||..+...
T Consensus         2 ~lGv~~~~~---~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~   49 (82)
T PF13180_consen    2 GLGVTVQNL---SD----TGGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSS   49 (82)
T ss_dssp             E-SEEEEEC---SC----SSSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSH
T ss_pred             EECeEEEEc---cC----CCeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCH
Confidence            588998882   11    3489999999999999999 99999    899998653

...

>KOG3552|consensus

Probab=95.91  E-value=0.0064  Score=69.84  Aligned_cols=43  Identities=23%  Similarity=0.377  Sum_probs=42.0

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      |+|++||+||.|||.++..+..+-+++++|.+...|.|+|+++
T Consensus        90 GKL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP  132 (1298)
T KOG3552|consen   90 GKLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP  132 (1298)
T ss_pred             ccccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence            6999999999999999999999999999999999999999997

>KOG3425|consensus

Probab=95.83  E-value=0.035  Score=49.44  Aligned_cols=62  Identities=21%  Similarity=0.374  Sum_probs=46.8

Q ss_pred             eEEEEEeC--------CCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch------hchhhhCCC-CCCcEEEEEEC
Q psy12938        500 TVIAHLSS--------PSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG------DHFSATFKT-SGLPAMLAYRG  561 (612)
Q Consensus       500 ~Vvvhfy~--------~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~------d~~~~~~~i-~~lPtllvyk~  561 (612)
                      .++|.|++        +||+.|..-.|++.+.-+..| +++|+.+.+-.-+      ..+-..+.+ .++|||+=|++
T Consensus        27 ~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   27 TIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKR  104 (128)
T ss_pred             eEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcC
Confidence            48888987        699999999999998777665 6999999864321      012233444 89999999996

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.82  E-value=0.023  Score=64.78  Aligned_cols=63  Identities=14%  Similarity=0.170  Sum_probs=55.4

Q ss_pred             eEEE-EEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        500 TVIA-HLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       500 ~Vvv-hfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      .+-+ -|+.+||+.|..+...+..+|...|++..--|+...++ +++++|+++.+|++++  ||+.+
T Consensus       477 ~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~-~~~~~~~v~~vP~~~i--~~~~~  540 (555)
T TIGR03143       477 PVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP-DLKDEYGIMSVPAIVV--DDQQV  540 (555)
T ss_pred             CeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH-HHHHhCCceecCEEEE--CCEEE
Confidence            4544 45799999999999999999999999999999999887 8889999999999987  67755

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.80  E-value=0.03  Score=44.29  Aligned_cols=60  Identities=18%  Similarity=0.434  Sum_probs=42.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeEE
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGNF  568 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~~  568 (612)
                      |+-|+.+||+.|+.+...|..+.     ++|..++.+..+   +++....+...+|++  |.||+.++.+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~igg~   64 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIGGY   64 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEecH
Confidence            56688999999999999998874     666666665432   233344566788877  5688887744

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>KOG3651|consensus

Probab=95.77  E-value=0.0087  Score=60.84  Aligned_cols=51  Identities=18%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             hHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         47 VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        47 i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..+..+|+++.||+|+.|||.++.|.|..+++.+|+.+.+.|+++.-....
T Consensus        41 tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~IhyNKL~a   91 (429)
T KOG3651|consen   41 TPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKIHYNKLEA   91 (429)
T ss_pred             CchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEEEehhccc
Confidence            445678999999999999999999999999999999999999999876533

>TIGR03137 AhpC peroxiredoxin

Probab=95.73  E-value=0.077  Score=51.68  Aligned_cols=97  Identities=11%  Similarity=0.001  Sum_probs=66.0

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc------------------------hhchhhhCCC
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV------------------------GDHFSATFKT  550 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~------------------------~d~~~~~~~i  550 (612)
                      +.+||+.|| +.||+.|..--+.|.++..+|.  +++++-|..+..                        ...++..|.+
T Consensus        31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv  110 (187)
T TIGR03137        31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV  110 (187)
T ss_pred             CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence            448999999 9999999998888888887773  567766654421                        0023456776


Q ss_pred             C------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCC
Q psy12938        551 S------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAG  597 (612)
Q Consensus       551 ~------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~  597 (612)
                      .      ..|+.+++ ++|++...++.....   +-..++|.+.|.+.-.+..+
T Consensus       111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~---~~~~~~ll~~l~~~~~~~~~  161 (187)
T TIGR03137       111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGI---GRDASELLRKIKAAQYVAAH  161 (187)
T ss_pred             cccCCCceeeEEEEECCCCEEEEEEEeCCCC---CCCHHHHHHHHHHhhhHHhc
Confidence            4      35877777 799999988754222   23667787777655554433

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=95.67  E-value=0.11  Score=52.72  Aligned_cols=85  Identities=12%  Similarity=0.001  Sum_probs=62.4

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch--------hchhhhCCCCCCcEEEEEECCEEeeEEEe
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG--------DHFSATFKTSGLPAMLAYRGGEVVGNFVR  570 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~--------d~~~~~~~i~~lPtllvyk~G~~~~~~vg  570 (612)
                      +-++.||...|+.|..+.++|..+|++|. .|..+.+|.--.+        ...++++.+...|++++..-......-++
T Consensus       145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~  224 (248)
T PRK13703        145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLS  224 (248)
T ss_pred             ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEe
Confidence            89999999999999999999999999995 5777787753221        02456899999999998866554443455


Q ss_pred             ccccccCCCCHHHHHHHHH
Q psy12938        571 LGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       571 ~~~~~g~~~~~~~lE~~L~  589 (612)
                      ++     -++.++|...+.
T Consensus       225 ~G-----~iS~deL~~Ri~  238 (248)
T PRK13703        225 YG-----FITQDDLAKRFL  238 (248)
T ss_pred             ec-----cCCHHHHHHHHH
Confidence            41     235577765553

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=95.67  E-value=0.011  Score=49.45  Aligned_cols=42  Identities=24%  Similarity=0.476  Sum_probs=36.5

Q ss_pred             CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        324 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       324 glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      ||||.+.-         ...+++|..|.++++|++.| |++||    |||..+...
T Consensus         3 ~lG~~~~~---------~~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~   48 (85)
T cd00988           3 GIGLELKY---------DDGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGL   48 (85)
T ss_pred             EEEEEEEE---------cCCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCC
Confidence            68998866         23579999999999999998 99999    899998875

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3414|consensus

Probab=95.66  E-value=0.051  Score=48.75  Aligned_cols=69  Identities=13%  Similarity=0.249  Sum_probs=58.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      ....||+.|..+|-+.|-.|+..|..+|....+ +...-++.+..+ .+.+-|++...||+++|-|++-+.
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~-~~~~~~~l~~p~tvmfFfn~kHmk   91 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP-DFVKMYELYDPPTVMFFFNNKHMK   91 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhh-hhhhhhcccCCceEEEEEcCceEE
Confidence            345899999999999999999999999998765 555567778777 677899999999999998887665

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=95.61  E-value=0.078  Score=48.16  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=56.2

Q ss_pred             hhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        491 EIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       491 ~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      +|..+ .+..||+.|..+|-+.|-.|+.+|..+|.+..+ .-++-+|.+..+ .+..-|++...=|+++|-+++-+.
T Consensus        14 AI~~e-~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vp-dfn~~yel~dP~tvmFF~rnkhm~   88 (133)
T PF02966_consen   14 AILSE-EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVP-DFNQMYELYDPCTVMFFFRNKHMM   88 (133)
T ss_dssp             HHHH--SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTH-CCHHHTTS-SSEEEEEEETTEEEE
T ss_pred             HHhcc-CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccch-hhhcccccCCCeEEEEEecCeEEE
Confidence            34433 356899999999999999999999999999865 777788999888 566889998444577776777544

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=95.56  E-value=0.03  Score=46.65  Aligned_cols=42  Identities=26%  Similarity=0.497  Sum_probs=37.2

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||..+.+.++.++..+++. .+..+.|.+.|.
T Consensus        30 gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988          30 GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             CCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            699999999999999999999999999976 457789999875

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3571|consensus

Probab=95.55  E-value=0.012  Score=63.85  Aligned_cols=44  Identities=20%  Similarity=0.416  Sum_probs=40.3

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhC---CCceEEEEeec
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT---SGLVRFLIGRE   95 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~---~~~v~l~v~R~   95 (612)
                      +||+.+||.||.||-++++++|..+||++|+.+   .++++|+|..-
T Consensus       293 DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~  339 (626)
T KOG3571|consen  293 DGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKC  339 (626)
T ss_pred             cCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeec
Confidence            679999999999999999999999999999974   68899999763

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=95.51  E-value=0.049  Score=45.13  Aligned_cols=60  Identities=25%  Similarity=0.552  Sum_probs=42.1

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc--hhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV--GDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~--~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      .-|+-|+.+||+.|+.....|+.+     ++.|-.++.+..  ...+........+|.++  -||+.++
T Consensus         8 ~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ig   69 (79)
T TIGR02190         8 ESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLIG   69 (79)
T ss_pred             CCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEEc
Confidence            346678999999999999999864     455666665432  11333445778999995  4888755

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=95.48  E-value=0.023  Score=49.51  Aligned_cols=82  Identities=21%  Similarity=0.255  Sum_probs=50.1

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchh--c----hhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGD--H----FSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d--~----~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      |+-|..+||+.|+.+...|+.+.     +.|--++.+..++  .    +........+|.+  |-+|+.++.+--+....
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iGG~ddl~~l~   82 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVGGLENVMALH   82 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEcCHHHHHHHH
Confidence            55688899999999999998873     3333444442211  1    2222356799996  78898777542222211


Q ss_pred             cCCCCHHHHHHHHHHCCcc
Q psy12938        576 GEGYFVEDVEAFLVEAGLL  594 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~g~l  594 (612)
                      -.    ..|..+|.+.|++
T Consensus        83 ~~----G~L~~~l~~~~~~   97 (99)
T TIGR02189        83 IS----GSLVPMLKQAGAL   97 (99)
T ss_pred             Hc----CCHHHHHHHhCcc
Confidence            11    3467777777765

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>KOG1731|consensus

Probab=95.43  E-value=0.0081  Score=66.39  Aligned_cols=81  Identities=12%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecC-CCchhchhhhCCCCCCcEEE
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPL-GCVGDHFSATFKTSGLPAML  557 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~-~~~~d~~~~~~~i~~lPtll  557 (612)
                      |....|..+|....  .--+|.||++||+.|+...|.++.+|+..    +-++...||- +.....+-.+|.|+.-|+|-
T Consensus        44 Ld~~tf~~~v~~~~--~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlr  121 (606)
T KOG1731|consen   44 LDVDTFNAAVFGSR--KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLR  121 (606)
T ss_pred             eehhhhHHHhcccc--hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceee
Confidence            33445666666533  35788999999999999999999999763    3477777773 22112467899999999999


Q ss_pred             EEECCEEe
Q psy12938        558 AYRGGEVV  565 (612)
Q Consensus       558 vyk~G~~~  565 (612)
                      .|+-+-.-
T Consensus       122 yf~~~~~~  129 (606)
T KOG1731|consen  122 YFPPDSQN  129 (606)
T ss_pred             ecCCcccc
Confidence            99765433

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.42  E-value=0.1  Score=52.65  Aligned_cols=84  Identities=19%  Similarity=0.335  Sum_probs=57.7

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC----C----------ch---------------------
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG----C----------VG---------------------  541 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~----~----------~~---------------------  541 (612)
                      ....+|+-|.++.|+.|+.+.+.|.++...--.++|+-.+..    .          ..                     
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~  185 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD  185 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence            455789999999999999999999987553233444322210    0          00                     


Q ss_pred             ------hchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        542 ------DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       542 ------d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                            ..+.+++.+.+.|||+ |.||+.+   .|+       ...++|+.+|.+.
T Consensus       186 ~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~-------~~~~~L~~~l~~~  230 (232)
T PRK10877        186 VDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGY-------QGPKEMKAFLDEH  230 (232)
T ss_pred             chHHHhHHHHHHcCCccccEEE-EcCCeEe---eCC-------CCHHHHHHHHHHc
Confidence                  1224689999999999 8899876   343       2348899998754

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=95.42  E-value=0.086  Score=48.69  Aligned_cols=74  Identities=12%  Similarity=0.167  Sum_probs=52.3

Q ss_pred             ceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch----------------------hchhhhCCCC--
Q psy12938        499 ITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG----------------------DHFSATFKTS--  551 (612)
Q Consensus       499 ~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~----------------------d~~~~~~~i~--  551 (612)
                      .++|+.|| +.||+.|..-.+.|.+++++|.  +++|+-|..+...                      ..+...|++.  
T Consensus        29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~  108 (149)
T cd03018          29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE  108 (149)
T ss_pred             CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence            46777777 8999999999999999999885  5888887654210                      1233455555  


Q ss_pred             --CCc--EEEEE-ECCEEeeEEEecc
Q psy12938        552 --GLP--AMLAY-RGGEVVGNFVRLG  572 (612)
Q Consensus       552 --~lP--tllvy-k~G~~~~~~vg~~  572 (612)
                        ++|  +.+++ ++|+++..+.|..
T Consensus       109 ~~~~~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018         109 DLGVAERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             cCCCccceEEEECCCCEEEEEEecCC
Confidence              333  55555 6899999887763

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>KOG3552|consensus

Probab=95.41  E-value=0.023  Score=65.51  Aligned_cols=39  Identities=21%  Similarity=0.365  Sum_probs=37.6

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeec
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   39 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~   39 (612)
                      +||+||+|||.++..++.+.+|+++|.|...|.|+|.++
T Consensus        94 PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV~qP  132 (1298)
T KOG3552|consen   94 PGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTVCQP  132 (1298)
T ss_pred             CCCeEEEecCcccccccHHHHHHHHHHHhhhcceEEecc
Confidence            699999999999999999999999999999999999885

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=95.40  E-value=0.051  Score=42.31  Aligned_cols=57  Identities=14%  Similarity=0.349  Sum_probs=40.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC---chhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC---VGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~---~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      |+-|..+||+.|+.....|+..     +++|--++.+.   ..+++.+..+...+|++++  ||+.+
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I   60 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI   60 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence            5678899999999999999664     45565555543   2223434448899999987  88754

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>KOG2501|consensus

Probab=95.26  E-value=0.031  Score=52.51  Aligned_cols=70  Identities=24%  Similarity=0.384  Sum_probs=50.0

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHH----HhhcC--CceEEEecCCCch----------------------hchhhhC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAEL----SRSHT--NVKFVSVPLGCVG----------------------DHFSATF  548 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~L----A~~~~--~vkF~ki~~~~~~----------------------d~~~~~~  548 (612)
                      .+..|.+.|.|.||++|+.+.|+|.++    .....  +|-|+.-|.++..                      ..+..+|
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky  111 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY  111 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence            345899999999999999998888775    33332  3666666654310                      1345689


Q ss_pred             CCCCCcEEEEE-ECCEEee
Q psy12938        549 KTSGLPAMLAY-RGGEVVG  566 (612)
Q Consensus       549 ~i~~lPtllvy-k~G~~~~  566 (612)
                      .+..+|+|.+. .+|+.+.
T Consensus       112 ~v~~iP~l~i~~~dG~~v~  130 (157)
T KOG2501|consen  112 EVKGIPALVILKPDGTVVT  130 (157)
T ss_pred             ccCcCceeEEecCCCCEeh
Confidence            99999999876 4676665

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.25  E-value=0.056  Score=61.15  Aligned_cols=63  Identities=13%  Similarity=0.123  Sum_probs=56.1

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      .-|--|+.++|+.|...-..+..+|..+|++.+-.|+....+ +++++|++..+|++++  ||+.+
T Consensus       118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~-~~~~~~~v~~VP~~~i--~~~~~  180 (517)
T PRK15317        118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ-DEVEARNIMAVPTVFL--NGEEF  180 (517)
T ss_pred             eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH-hHHHhcCCcccCEEEE--CCcEE
Confidence            346679999999999999999999999999999999999888 7889999999999965  77654

>KOG3542|consensus

Probab=95.19  E-value=0.012  Score=65.59  Aligned_cols=55  Identities=29%  Similarity=0.532  Sum_probs=46.6

Q ss_pred             EEEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        314 LGVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       314 ~~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      ..|.|.|.+  ..|=|+++|   |.+.+   -||||..|.||+-|++.| |+.||    |||.++..+
T Consensus       537 RqviLtk~sre~pl~f~L~G---GsEkG---fgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfeni  597 (1283)
T KOG3542|consen  537 RQVILTKASREDPLMFRLVG---GSEKG---FGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENI  597 (1283)
T ss_pred             eeEEEecccccCCceeEecc---Ccccc---ceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhh
Confidence            358888855  579999999   66644   389999999999999999 99999    999888664

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=95.11  E-value=0.04  Score=48.62  Aligned_cols=73  Identities=16%  Similarity=0.231  Sum_probs=51.7

Q ss_pred             EEEEEeCCCC---hhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        501 VIAHLSSPSL---PACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       501 Vvvhfy~~~~---~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      .|+ |++..+   +.|.-+.=+|-+|.+.++..-.+-+-+......+..+|.+...|+|++||+|+.++.+-|+.+.
T Consensus        29 ~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW  104 (107)
T PF07449_consen   29 AVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDGRYLGAIEGIRDW  104 (107)
T ss_dssp             EEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTH
T ss_pred             EEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECCEEEEEecCeecc
Confidence            444 444433   4444555589999999987555554333333478899999999999999999999999998654

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>KOG3553|consensus

Probab=94.73  E-value=0.0051  Score=52.61  Aligned_cols=41  Identities=27%  Similarity=0.554  Sum_probs=35.5

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|+.+|.||.|||-+...+||.+|+.-|+. ...++++|.|.
T Consensus        76 GLrihDKIlQvNG~DfTMvTHd~Avk~i~k-~~vl~mLVaR~  116 (124)
T KOG3553|consen   76 GLRIHDKILQVNGWDFTMVTHDQAVKRITK-EEVLRMLVARQ  116 (124)
T ss_pred             cceecceEEEecCceeEEEEhHHHHHHhhH-hHHHHHHHHhh
Confidence            699999999999999999999999999988 45566666653

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=94.70  E-value=0.36  Score=47.16  Aligned_cols=90  Identities=14%  Similarity=0.053  Sum_probs=64.0

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch------------------------hchhhhCCC
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG------------------------DHFSATFKT  550 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~------------------------d~~~~~~~i  550 (612)
                      +.+||+.|| +.||+.|..--+.|.++..+|.  ++.++-|..+...                        ..++..|++
T Consensus        31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv  110 (187)
T PRK10382         31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  110 (187)
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCC
Confidence            348999999 9999999998888888888873  5667666544210                        134567776


Q ss_pred             ----CCC--cEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        551 ----SGL--PAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       551 ----~~l--Ptllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                          .++  |+.++. ++|++...++....   -+...+++.+.|..
T Consensus       111 ~~~~~g~~~r~tfIID~~G~I~~~~~~~~~---~~~~~~eil~~l~a  154 (187)
T PRK10382        111 MREDEGLADRATFVVDPQGIIQAIEVTAEG---IGRDASDLLRKIKA  154 (187)
T ss_pred             CcccCCceeeEEEEECCCCEEEEEEEeCCC---CCCCHHHHHHHHHh
Confidence                356  888888 59999998775422   23367777777753

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=94.65  E-value=0.14  Score=46.66  Aligned_cols=41  Identities=12%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhc--CCceEEEecCC
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSH--TNVKFVSVPLG  538 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~  538 (612)
                      +.+++|.|| ..||+.|....+.|.++.++|  .++.|+-|..+
T Consensus        22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d   65 (140)
T cd02971          22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD   65 (140)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            457888999 689999999999999999886  46888888765

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=94.56  E-value=0.12  Score=45.37  Aligned_cols=81  Identities=16%  Similarity=0.205  Sum_probs=54.5

Q ss_pred             HHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCC---CchhchhhhCCCC-CCcEEEEEECCE
Q psy12938        489 LSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLG---CVGDHFSATFKTS-GLPAMLAYRGGE  563 (612)
Q Consensus       489 ~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~---~~~d~~~~~~~i~-~lPtllvyk~G~  563 (612)
                      ++++.+.+...++++.=....|+-+++.-..|+..+...++ +.|+-++.-   ...+.+++.|++. .=|-+|++|||+
T Consensus        10 l~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~   89 (105)
T PF11009_consen   10 LEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGK   89 (105)
T ss_dssp             HHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTE
T ss_pred             HHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCE
Confidence            34444444566787766778899999999999999999886 777777643   2334678899997 669999999999


Q ss_pred             EeeEEE
Q psy12938        564 VVGNFV  569 (612)
Q Consensus       564 ~~~~~v  569 (612)
                      .+..-.
T Consensus        90 ~v~~aS   95 (105)
T PF11009_consen   90 VVWHAS   95 (105)
T ss_dssp             EEEEEE
T ss_pred             EEEECc
Confidence            998653

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=94.43  E-value=0.053  Score=49.62  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=35.2

Q ss_pred             CceEEEEEeCCCChh-hhhhHHHHHHHHhhcCC-----ceEEEecCC
Q psy12938        498 HITVIAHLSSPSLPA-CRALNSSLAELSRSHTN-----VKFVSVPLG  538 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~-C~~m~~~l~~LA~~~~~-----vkF~ki~~~  538 (612)
                      ..++|+.||+.||+. |...-+.|.+++++|..     ++|+-|..+
T Consensus        22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d   68 (142)
T cd02968          22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD   68 (142)
T ss_pred             CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence            448999999999998 99999999999998853     888888654

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>KOG3938|consensus

Probab=94.40  E-value=0.053  Score=54.49  Aligned_cols=73  Identities=27%  Similarity=0.287  Sum_probs=56.2

Q ss_pred             EEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc-----CCCCcc
Q psy12938        315 GVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA-----DAGLEK  385 (612)
Q Consensus       315 ~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~-----~~~~~~  385 (612)
                      .|++.|....||++|..-|.|        =.|||.|.+|+.-++---+++||    +||.+++|..|-.     ..++..
T Consensus       129 Ev~v~KsedalGlTITDNG~G--------yAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rg  200 (334)
T KOG3938|consen  129 EVEVVKSEDALGLTITDNGAG--------YAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRG  200 (334)
T ss_pred             eEEEEecccccceEEeeCCcc--------eeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccC
Confidence            488999999999999984333        26999999999999988999999    9999999987754     233333


Q ss_pred             cceEEEEeec
Q psy12938        386 LGIFVKTITE  395 (612)
Q Consensus       386 ~~i~i~~i~~  395 (612)
                      ....++-|-|
T Consensus       201 e~ftlrLieP  210 (334)
T KOG3938|consen  201 ETFTLRLIEP  210 (334)
T ss_pred             CeeEEEeecc
Confidence            4444444444

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=94.39  E-value=0.091  Score=43.75  Aligned_cols=41  Identities=24%  Similarity=0.396  Sum_probs=33.1

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~   96 (612)
                      +|++||.|++|||..+.  +..+...+|..  .+.+|+|+|.|..
T Consensus        31 Gl~~GD~I~~ing~~v~--~~~~~~~~l~~~~~g~~v~l~v~R~g   73 (82)
T PF13180_consen   31 GLQPGDIILAINGKPVN--SSEDLVNILSKGKPGDTVTLTVLRDG   73 (82)
T ss_dssp             TS-TTEEEEEETTEESS--SHHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred             CCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            59999999999999995  66777777743  5789999999964

...

>PRK10329 glutaredoxin-like protein; Provisional

Probab=94.17  E-value=0.22  Score=41.63  Aligned_cols=71  Identities=14%  Similarity=0.214  Sum_probs=47.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhch---hhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHF---SATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~---~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      |.-|..+||+.|+.+...|++.     ++.|-.++.+..+ +.   ....+...+|++++  ++..   +.        +
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~~-----gI~~~~idi~~~~-~~~~~~~~~g~~~vPvv~i--~~~~---~~--------G   63 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMESR-----GFDFEMINVDRVP-EAAETLRAQGFRQLPVVIA--GDLS---WS--------G   63 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHHC-----CCceEEEECCCCH-HHHHHHHHcCCCCcCEEEE--CCEE---Ee--------c
Confidence            4557789999999999998663     6778788877543 22   12346679999965  4432   33        3


Q ss_pred             CCHHHHHHHHHHC
Q psy12938        579 YFVEDVEAFLVEA  591 (612)
Q Consensus       579 ~~~~~lE~~L~~~  591 (612)
                      |..+.|.++...+
T Consensus        64 f~~~~l~~~~~~~   76 (81)
T PRK10329         64 FRPDMINRLHPAP   76 (81)
T ss_pred             CCHHHHHHHHHhh
Confidence            4567777766544

>PRK15000 peroxidase; Provisional

Probab=94.10  E-value=0.43  Score=47.04  Aligned_cols=89  Identities=11%  Similarity=0.067  Sum_probs=64.3

Q ss_pred             CceEEEEEeC-CCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------------hchhhh
Q psy12938        498 HITVIAHLSS-PSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------------DHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy~-~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------------d~~~~~  547 (612)
                      +.+||+.||+ .||+.|..--+.|.+++.+|.  +++++-|..+...                           -.++..
T Consensus        34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~  113 (200)
T PRK15000         34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA  113 (200)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence            4599999999 599999999999999988884  5788877655210                           012345


Q ss_pred             CCCC------CCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        548 FKTS------GLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       548 ~~i~------~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      |.+.      .+|+.++.. +|++...+++-...   +-..+++.+.|.
T Consensus       114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~---gr~~~eilr~l~  159 (200)
T PRK15000        114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPL---GRNIDEMLRMVD  159 (200)
T ss_pred             cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCC---CCCHHHHHHHHH
Confidence            6666      588888886 89999988775333   235677766664

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=94.08  E-value=0.054  Score=44.58  Aligned_cols=40  Identities=20%  Similarity=0.209  Sum_probs=33.3

Q ss_pred             cceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938        325 LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG  374 (612)
Q Consensus       325 lG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g  374 (612)
                      ||+.+..         .+.+++|..|.++++|++.| |++||    |||..+..
T Consensus         3 ~G~~~~~---------~~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~   46 (80)
T cd00990           3 LGLTLDK---------EEGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA   46 (80)
T ss_pred             ccEEEEc---------cCCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH
Confidence            5777654         23479999999999999999 99999    89998765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=94.06  E-value=0.14  Score=42.37  Aligned_cols=41  Identities=20%  Similarity=0.286  Sum_probs=34.2

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~   96 (612)
                      +|+.||+|++|||..+.  +.++...+|...  +..+.|++.|..
T Consensus        27 GL~~GDiI~~Ing~~v~--~~~d~~~~l~~~~~g~~v~l~v~r~g   69 (79)
T cd00991          27 VLHTGDVIYSINGTPIT--TLEDFMEALKPTKPGEVITVTVLPST   69 (79)
T ss_pred             CCCCCCEEEEECCEEcC--CHHHHHHHHhcCCCCCEEEEEEEECC
Confidence            69999999999999998  567788888764  678899998753

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=93.72  E-value=0.14  Score=57.89  Aligned_cols=62  Identities=15%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      -|--|+.+.|+.|...-..+..||..+|++.+-.|+....+ +++.+|++..+|++++  ||+.+
T Consensus       120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~-~~~~~~~v~~VP~~~i--~~~~~  181 (515)
T TIGR03140       120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ-DEVEALGIQGVPAVFL--NGEEF  181 (515)
T ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH-HHHHhcCCcccCEEEE--CCcEE
Confidence            46679999999999999999999999999999999999888 7889999999999976  66644

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>KOG4371|consensus

Probab=93.65  E-value=0.11  Score=60.91  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=41.6

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      -|++||-|+.|||+-+++.-|.+|+.+++..++.|.|-|.|++.
T Consensus      1186 d~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 1229 (1332)
T KOG4371|consen 1186 DIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPPP 1229 (1332)
T ss_pred             CcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCCc
Confidence            69999999999999999999999999999999999999998764

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=93.59  E-value=0.2  Score=40.92  Aligned_cols=40  Identities=15%  Similarity=0.376  Sum_probs=33.0

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhC-CCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~   95 (612)
                      +|+.||.|++|||..+.  +.++...+|... +..+.+++.|.
T Consensus        29 gl~~GD~I~~ing~~i~--~~~~~~~~l~~~~~~~~~l~v~r~   69 (79)
T cd00989          29 GLKAGDRILAINGQKIK--SWEDLVDAVQENPGKPLTLTVERN   69 (79)
T ss_pred             CCCCCCEEEEECCEECC--CHHHHHHHHHHCCCceEEEEEEEC
Confidence            59999999999999998  557777888765 56788888774

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=93.57  E-value=0.29  Score=39.47  Aligned_cols=67  Identities=22%  Similarity=0.511  Sum_probs=45.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch--hchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY  579 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~--d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~  579 (612)
                      |+-|..+||+.|......|...     ++.|..++.+...  ..+........+|.+  |-||+.++   |+        
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~ig---g~--------   64 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELIG---GS--------   64 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEEe---CH--------
Confidence            5568889999999999998864     4566666655332  123233477899997  67888654   22        


Q ss_pred             CHHHHHHHH
Q psy12938        580 FVEDVEAFL  588 (612)
Q Consensus       580 ~~~~lE~~L  588 (612)
                        ++|..||
T Consensus        65 --~~l~~~l   71 (72)
T cd03029          65 --DDLEKYF   71 (72)
T ss_pred             --HHHHHHh
Confidence              6677776

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=93.48  E-value=0.097  Score=57.76  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=26.7

Q ss_pred             ccceEEEEeccCchhcccCCccccc----CCceeee
Q psy12938        342 KLGIFVKTITEAGAAARDGRIQGAE----GLGLSII  373 (612)
Q Consensus       342 ~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~  373 (612)
                      ..|++|..|.+|++|++.| |+.||    |||..+.
T Consensus       256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~  290 (428)
T TIGR02037       256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPIS  290 (428)
T ss_pred             CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcC
Confidence            3589999999999999999 99999    6666553

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=93.47  E-value=0.28  Score=39.71  Aligned_cols=58  Identities=17%  Similarity=0.308  Sum_probs=41.5

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEee
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |+-|+.+||+.|+.....|++.     ++.|..++.+..+   +++.+..+...+|++  |.||+.++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG   63 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG   63 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence            4567789999999999999874     5667777765432   133344466788988  67888777

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=93.42  E-value=0.19  Score=46.17  Aligned_cols=41  Identities=22%  Similarity=0.278  Sum_probs=34.1

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV  540 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~  540 (612)
                      .||+.|++.||+.|+.--+.|.++.+++  .+++++-|..+..
T Consensus        26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~   68 (149)
T cd02970          26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP   68 (149)
T ss_pred             EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence            4555556999999999999999999998  4699999987754

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=93.40  E-value=0.17  Score=41.55  Aligned_cols=57  Identities=19%  Similarity=0.338  Sum_probs=38.5

Q ss_pred             EEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEee
Q psy12938        503 AHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       503 vhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      +-|+.+||+.|+.....|+++.     +.|-.++.+..+   +.+........+|++  |-+|+.++
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig   61 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSSKG-----VTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG   61 (79)
T ss_pred             EEEecCCChhHHHHHHHHHHcC-----CCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence            4577899999999999998753     445555544332   123333467789997  66887665

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=92.98  E-value=0.65  Score=44.17  Aligned_cols=82  Identities=18%  Similarity=0.324  Sum_probs=64.4

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCC--CCcEEEEEE--CCEEeeEEEecccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTS--GLPAMLAYR--GGEVVGNFVRLGEE  574 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~--~lPtllvyk--~G~~~~~~vg~~~~  574 (612)
                      .+++-|+.........+...|..+|++|.+ +.|+.++.+..+ .+...|.+.  .+|+++++.  +++  ..+.   . 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~-~~~~~~~i~~~~~P~~vi~~~~~~~--~~~~---~-  169 (184)
T PF13848_consen   97 PVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFP-RLLKYFGIDEDDLPALVIFDSNKGK--YYYL---P-  169 (184)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTH-HHHHHTTTTTSSSSEEEEEETTTSE--EEE------
T ss_pred             eEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhH-HHHHHcCCCCccCCEEEEEECCCCc--EEcC---C-
Confidence            477777777788889999999999999975 999999999665 566899887  999999999  444  2121   1 


Q ss_pred             ccCCCCHHHHHHHHH
Q psy12938        575 LGEGYFVEDVEAFLV  589 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~  589 (612)
                       ...++.+.|+.||.
T Consensus       170 -~~~~~~~~i~~Fl~  183 (184)
T PF13848_consen  170 -EGEITPESIEKFLN  183 (184)
T ss_dssp             -SSCGCHHHHHHHHH
T ss_pred             -CCCCCHHHHHHHhc
Confidence             13688899999986

...

>KOG0609|consensus

Probab=92.98  E-value=0.13  Score=56.66  Aligned_cols=55  Identities=27%  Similarity=0.358  Sum_probs=46.0

Q ss_pred             EEEEEEeeC-CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        313 LLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       313 ~~~v~l~k~-~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      +..|.+.|. ..-||.+|.-   ..+     ..+||.+|..||.|++.|.|++||    |||+++.+.
T Consensus       123 vriv~i~k~~~eplG~Tik~---~e~-----~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~  182 (542)
T KOG0609|consen  123 VRIVRIVKNTGEPLGATIRV---EED-----TKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANK  182 (542)
T ss_pred             eEEEEEeecCCCccceEEEe---ccC-----CccEEeeeccCCcchhccceeeccchheecCeecccC
Confidence            344777887 5789999988   221     259999999999999999999999    999999985

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=92.95  E-value=0.27  Score=48.07  Aligned_cols=25  Identities=28%  Similarity=0.517  Sum_probs=22.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHH
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAE  522 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~  522 (612)
                      ....|+-|+++.|+.|+.+.+.|..
T Consensus        77 ~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          77 GKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhh
Confidence            4478889999999999999998876

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=92.93  E-value=0.46  Score=40.41  Aligned_cols=60  Identities=22%  Similarity=0.316  Sum_probs=39.9

Q ss_pred             eEEEEEe----CCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEee
Q psy12938        500 TVIAHLS----SPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       500 ~Vvvhfy----~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      .|||.-.    .+||+.|+.....|..+-     +.|-.++.+..+   +.+.+......+|.+  |.||+.++
T Consensus         9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~iG   75 (90)
T cd03028           9 PVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELVG   75 (90)
T ss_pred             CEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence            4555433    279999999999998873     455555544322   234444567789997  67898765

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>KOG3606|consensus

Probab=92.86  E-value=0.17  Score=51.11  Aligned_cols=86  Identities=17%  Similarity=0.244  Sum_probs=58.3

Q ss_pred             EECCeecCCCCHHHHHHHHh-cCCCeEEEEEeecCC-----CCch-----hhHHhhhc-------ccCCCCEEEEECCee
Q psy12938          7 EVDGKSLVGVTQEYAASVLR-NTSGLVRFLIGREKD-----PVNS-----EVAQLIRQ-------SLQVNDQIIEVDGKS   68 (612)
Q Consensus         7 ~VNg~~l~~~th~~av~~Lk-~~~~~v~l~v~r~~~-----~~~~-----~i~~i~~G-------~L~~GD~il~VNg~~   68 (612)
                      .|-.+++.--||- -|++.| .+.+.+.|-|+-...     ..-+     .|+++++|       -|.++|++|+|||..
T Consensus       148 sIIDVDivPEtHR-RVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIE  226 (358)
T KOG3606|consen  148 SIIDVDIVPETHR-RVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIE  226 (358)
T ss_pred             eeeeecccchhhh-heehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEE
Confidence            3445555544554 355665 455677777644321     1101     16777765       688999999999999


Q ss_pred             cCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         69 LVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        69 l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      +.|.|.+++-++|-.-..-+.++|.
T Consensus       227 VaGKTLDQVTDMMvANshNLIiTVk  251 (358)
T KOG3606|consen  227 VAGKTLDQVTDMMVANSHNLIITVK  251 (358)
T ss_pred             eccccHHHHHHHHhhcccceEEEec
Confidence            9999999999999776666666664

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=92.75  E-value=0.38  Score=38.87  Aligned_cols=59  Identities=14%  Similarity=0.307  Sum_probs=39.6

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCC-CCcEEEEEECCEEeeE
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTS-GLPAMLAYRGGEVVGN  567 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~-~lPtllvyk~G~~~~~  567 (612)
                      |+-|+.+||+.|+.....|+.+     ++.|--++.+..+   +.+.+.+... .+|++  |-+|+.++.
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~igg   64 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIGG   64 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEeC
Confidence            4567889999999999999875     4555555555432   1222334555 89976  678877663

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>KOG0913|consensus

Probab=92.32  E-value=0.1  Score=51.81  Aligned_cols=86  Identities=20%  Similarity=0.330  Sum_probs=65.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY  579 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~  579 (612)
                      ++.|+++||+.|+-+.++++.+|.--  -.|+..++|...++ .++-+|-+..|||+-=.|+|..-- +.|-.+.     
T Consensus        43 mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np-gLsGRF~vtaLptIYHvkDGeFrr-ysgaRdk-----  115 (248)
T KOG0913|consen   43 MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP-GLSGRFLVTALPTIYHVKDGEFRR-YSGARDK-----  115 (248)
T ss_pred             HHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc-ccceeeEEEecceEEEeecccccc-ccCcccc-----
Confidence            45689999999999999999998753  36999999988776 889999999999999999997544 5554443     


Q ss_pred             CHHHHHHHH--HHCCcccC
Q psy12938        580 FVEDVEAFL--VEAGLLRA  596 (612)
Q Consensus       580 ~~~~lE~~L--~~~g~l~~  596 (612)
                        .++.+|+  +++-.|++
T Consensus       116 --~dfisf~~~r~w~~i~p  132 (248)
T KOG0913|consen  116 --NDFISFEEHREWQSIDP  132 (248)
T ss_pred             --hhHHHHHHhhhhhccCC
Confidence              4455554  34445544

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=92.25  E-value=0.65  Score=41.67  Aligned_cols=85  Identities=16%  Similarity=0.174  Sum_probs=56.4

Q ss_pred             CCceEEEEEeCC----CChhhhhh--HHHHHHHHhhcCCceEEEecCCC-chhchhhhCCCCCCcEEEEE---E-CCEEe
Q psy12938        497 RHITVIAHLSSP----SLPACRAL--NSSLAELSRSHTNVKFVSVPLGC-VGDHFSATFKTSGLPAMLAY---R-GGEVV  565 (612)
Q Consensus       497 ~~~~Vvvhfy~~----~~~~C~~m--~~~l~~LA~~~~~vkF~ki~~~~-~~d~~~~~~~i~~lPtllvy---k-~G~~~  565 (612)
                      ...+++|.||++    ||.-|+.+  ++.+.++-.+  +.=+...|++. .+-.++..+.+...|+++++   . +.+++
T Consensus        16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv   93 (116)
T cd02991          16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV   93 (116)
T ss_pred             hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence            345899999999    88888655  3333332222  34445566652 22357889999999999999   2 34567


Q ss_pred             eEEEeccccccCCCCHHHHHHHHHH
Q psy12938        566 GNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       566 ~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .++.|.       .+.++|...|..
T Consensus        94 ~~i~G~-------~~~~~ll~~L~~  111 (116)
T cd02991          94 GRLEGL-------IQPEDLINRLTF  111 (116)
T ss_pred             EEEeCC-------CCHHHHHHHHHH
Confidence            888776       345888887764

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=92.16  E-value=0.24  Score=54.23  Aligned_cols=42  Identities=33%  Similarity=0.491  Sum_probs=38.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhC-CCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~   95 (612)
                      +|++||.|+.|||.++.+++.++|+..|+.. +..|+|++.|.
T Consensus       129 gi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793         129 GIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             CCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            4999999999999999999999999999886 56799999996

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=92.02  E-value=0.44  Score=39.16  Aligned_cols=39  Identities=31%  Similarity=0.489  Sum_probs=32.4

Q ss_pred             cCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeec
Q psy12938         55 LQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGRE   95 (612)
Q Consensus        55 L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~   95 (612)
                      |++||.|++|||..+.  +.++...+|..  .+..+.|++.|.
T Consensus        25 L~~GD~I~~Ing~~v~--~~~~~~~~l~~~~~~~~v~l~v~r~   65 (79)
T cd00986          25 LKAGDHIIAVDGKPFK--EAEELIDYIQSKKEGDTVKLKVKRE   65 (79)
T ss_pred             CCCCCEEEEECCEECC--CHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            9999999999999998  56677777764  456889999874

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=91.91  E-value=1.7  Score=42.93  Aligned_cols=91  Identities=12%  Similarity=0.173  Sum_probs=61.2

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch--------------------------hchhhhCCCC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG--------------------------DHFSATFKTS  551 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~--------------------------d~~~~~~~i~  551 (612)
                      .|++.|+++||+.|..-.+.|.+++.+|.  +++++-|..+...                          -.++..|.+.
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~  107 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMI  107 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCc
Confidence            35668999999999999999999998884  5888877655210                          0234567654


Q ss_pred             ----CCc-----EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938        552 ----GLP-----AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       552 ----~lP-----tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~  593 (612)
                          +.|     ++++=++|++...+++-...   +-..++|.+.|.+.-.
T Consensus       108 ~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~---gr~~~ell~~l~~lq~  155 (203)
T cd03016         108 DPDAGSTLTVRAVFIIDPDKKIRLILYYPATT---GRNFDEILRVVDALQL  155 (203)
T ss_pred             cccCCCCceeeEEEEECCCCeEEEEEecCCCC---CCCHHHHHHHHHHHhh
Confidence                234     34444799999887764322   2346777777765433

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=91.85  E-value=0.13  Score=42.09  Aligned_cols=31  Identities=16%  Similarity=0.291  Sum_probs=28.0

Q ss_pred             cceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938        343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG  374 (612)
Q Consensus       343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g  374 (612)
                      ..++|..|.++++|++.| |+.||    |||..+..
T Consensus        12 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~   46 (79)
T cd00989          12 IEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKS   46 (79)
T ss_pred             cCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCC
Confidence            358999999999999999 99999    89998875

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=91.61  E-value=0.49  Score=39.53  Aligned_cols=40  Identities=23%  Similarity=0.273  Sum_probs=31.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~   95 (612)
                      +|+.||.|++|||..+.+  ..+...++...  +..+.|.+.|.
T Consensus        41 gl~~GD~I~~Ing~~i~~--~~~~~~~l~~~~~~~~i~l~v~r~   82 (90)
T cd00987          41 GLKPGDVILAVNGKPVKS--VADLRRALAELKPGDKVTLTVLRG   82 (90)
T ss_pred             CCCcCCEEEEECCEECCC--HHHHHHHHHhcCCCCEEEEEEEEC
Confidence            599999999999999984  44566666654  67889999874

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=91.45  E-value=0.76  Score=42.07  Aligned_cols=87  Identities=16%  Similarity=0.260  Sum_probs=62.2

Q ss_pred             CceEEEEEeCC---CChhh-hhhHHHHHHHHhhcC-C-ceEEEecCCCchhchhhhCCCC--CCcEEEEEECCEEeeEEE
Q psy12938        498 HITVIAHLSSP---SLPAC-RALNSSLAELSRSHT-N-VKFVSVPLGCVGDHFSATFKTS--GLPAMLAYRGGEVVGNFV  569 (612)
Q Consensus       498 ~~~Vvvhfy~~---~~~~C-~~m~~~l~~LA~~~~-~-vkF~ki~~~~~~d~~~~~~~i~--~lPtllvyk~G~~~~~~v  569 (612)
                      ..+.|+-|...   .-..+ ..+...|.++|++|. . +.|+-++++... .+.+.|.+.  ..|+++++...+.  ++.
T Consensus        20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~-~~~~~fgl~~~~~P~v~i~~~~~~--KY~   96 (130)
T cd02983          20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQL-DLEEALNIGGFGYPAMVAINFRKM--KFA   96 (130)
T ss_pred             CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccH-HHHHHcCCCccCCCEEEEEecccC--ccc
Confidence            34666666542   11222 467788999999995 4 899999999875 577889984  5999999988554  332


Q ss_pred             eccccccCCCCHHHHHHHHHHC
Q psy12938        570 RLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       570 g~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      -+    ...|+.+.|..|+..+
T Consensus        97 ~~----~~~~t~e~i~~Fv~~~  114 (130)
T cd02983          97 TL----KGSFSEDGINEFLREL  114 (130)
T ss_pred             cc----cCccCHHHHHHHHHHH
Confidence            12    2358999999999754

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=91.37  E-value=0.39  Score=44.10  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=33.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEec
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVP  536 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~  536 (612)
                      ...+|+.|++++|+.|+.+.+.+..+..+++++++...+
T Consensus         5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~   43 (154)
T cd03023           5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKE   43 (154)
T ss_pred             CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEe
Confidence            347889999999999999999999998888887666544

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>KOG1945|consensus

Probab=91.24  E-value=0.059  Score=56.35  Aligned_cols=95  Identities=22%  Similarity=0.099  Sum_probs=80.3

Q ss_pred             cCCccccccccccccccCCCCCCccchhhHHHHhhhccceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEec
Q psy12938        272 EDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTIT  351 (612)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~  351 (612)
                      ..+-.++.+++..+|++.+.+.||...+.++...........+.....+.+.++|+.|-+++.+........+++++..+
T Consensus       193 ~~peqa~l~~s~~kydr~n~d~dp~s~s~e~~l~~~~E~~~~y~~~~~s~Ss~~gedi~~~~k~a~~~lE~l~~~~k~q~  272 (377)
T KOG1945|consen  193 PEPEQAQLIKSSSKYDRMNDDGDPPSDSEEPPLGPSQEPKLPYPQDRLSTSSDEGEDIPIRPKIAALELELLVTWKKQQV  272 (377)
T ss_pred             CCccceeehhhhhhhhhhhccCCCcccccccCCcccccccccCcccccccccccccccccCcchhhhhhhhhhhhHHHHH
Confidence            33445777788999999999999998888877777777777788999999999999999986666666677899999999


Q ss_pred             cCchhcccCCccccc
Q psy12938        352 EAGAAARDGRIQGAE  366 (612)
Q Consensus       352 ~gg~a~~dgrl~~gD  366 (612)
                      .++++..++++.+.+
T Consensus       273 ~~~~~s~~kei~a~e  287 (377)
T KOG1945|consen  273 YHWLLSLNKEIYAQE  287 (377)
T ss_pred             HHHHHhhhHHHHHHH
Confidence            999999999999888

>PRK10139 serine endoprotease; Provisional

Probab=91.13  E-value=0.29  Score=54.44  Aligned_cols=82  Identities=18%  Similarity=0.295  Sum_probs=55.3

Q ss_pred             ccceEEEEeccCchhcccCCccccc----CCceeeeec-------------------------------ccccC------
Q psy12938        342 KLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM-------------------------------GVGAD------  380 (612)
Q Consensus       342 ~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~-------------------------------~~~~~------  380 (612)
                      ..|++|..|.++++|++.| ||+||    +||..+...                               +....      
T Consensus       289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~~~~~~~~~  367 (455)
T PRK10139        289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSAS  367 (455)
T ss_pred             CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCCcccc
Confidence            3589999999999999999 99999    566654321                               00000      


Q ss_pred             ------CCC-----------cccceEEEEeeccccccccCcceeccCCccc----cchHHHHHHHH
Q psy12938        381 ------AGL-----------EKLGIFVKTITEAGAAARDGRIQVRRGPKGV----LKDWEQFKQYE  425 (612)
Q Consensus       381 ------~~~-----------~~~~i~i~~i~~~~~a~~dg~l~~~~~~~gv----~~d~~~f~~~~  425 (612)
                            ..+           ...|++|..|.++++|++.| |+.||--..|    +.+|..|.+..
T Consensus       368 ~~~~~~~~~g~~l~~~~~~~~~~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~l  432 (455)
T PRK10139        368 AEMITPALQGATLSDGQLKDGTKGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSIAEMRKVL  432 (455)
T ss_pred             cccccccccccEecccccccCCCceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCHHHHHHHH
Confidence                  001           12589999999999998876 5666643222    36777776554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=91.07  E-value=1.5  Score=50.22  Aligned_cols=71  Identities=17%  Similarity=0.121  Sum_probs=55.9

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEE-CCEEe-eEEEec
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR-GGEVV-GNFVRL  571 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk-~G~~~-~~~vg~  571 (612)
                      .+++-|+.+.|..|..+...|++||.--+.++|...+..... .+.++|.+..+|++.+++ +|+.. -+|.|+
T Consensus       368 v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~-~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~  440 (555)
T TIGR03143       368 VTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEP-ESETLPKITKLPTVALLDDDGNYTGLKFHGV  440 (555)
T ss_pred             EEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccch-hhHhhcCCCcCCEEEEEeCCCcccceEEEec
Confidence            456667778999999999999999988888988777755433 567899999999999995 66432 456665

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=91.04  E-value=2.1  Score=42.00  Aligned_cols=94  Identities=11%  Similarity=0.076  Sum_probs=63.2

Q ss_pred             CceEEEEEeC-CCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------------hchhhh
Q psy12938        498 HITVIAHLSS-PSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------------DHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy~-~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------------d~~~~~  547 (612)
                      +.++++.||+ .||+.|..-...|.+++++|.  +++++-|..+...                           ..++..
T Consensus        36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~  115 (199)
T PTZ00253         36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS  115 (199)
T ss_pred             CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence            3489999996 789999988888999998885  6888877765221                           023456


Q ss_pred             CCCC------CCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938        548 FKTS------GLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL  594 (612)
Q Consensus       548 ~~i~------~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l  594 (612)
                      |++.      .+|+.+++. +|++...+++...   .+-..+++.+.|...-.+
T Consensus       116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~---~~r~~~e~l~~l~a~~~~  166 (199)
T PTZ00253        116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMP---VGRNVEEVLRLLEAFQFV  166 (199)
T ss_pred             cCCcccCCCceEEEEEEECCCCEEEEEEecCCC---CCCCHHHHHHHHHhhhhH
Confidence            6654      247777774 8898887776433   233556666666544443

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=90.86  E-value=0.18  Score=41.76  Aligned_cols=32  Identities=13%  Similarity=0.155  Sum_probs=28.9

Q ss_pred             ccceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938        342 KLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG  374 (612)
Q Consensus       342 ~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g  374 (612)
                      ..|++|.+|.++++|++.| |+.||    +||..+..
T Consensus         9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~   44 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITT   44 (79)
T ss_pred             CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCC
Confidence            3489999999999999999 99999    89998875

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=90.73  E-value=0.44  Score=51.96  Aligned_cols=42  Identities=26%  Similarity=0.380  Sum_probs=37.1

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~   95 (612)
                      +|+.||+|++|||+++.+.+..++..+|+. .+..|.|+|.|.
T Consensus       119 Gl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~  161 (389)
T PLN00049        119 GIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG  161 (389)
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence            599999999999999999999999998876 456899999874

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=90.54  E-value=0.45  Score=39.01  Aligned_cols=37  Identities=19%  Similarity=0.347  Sum_probs=28.2

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||..+.+  ..   .+++.  .+..+.|++.|.
T Consensus        29 Gl~~GD~I~~Ing~~v~~--~~---~~l~~~~~~~~v~l~v~r~   67 (80)
T cd00990          29 GLVAGDELVAVNGWRVDA--LQ---DRLKEYQAGDPVELTVFRD   67 (80)
T ss_pred             CCCCCCEEEEECCEEhHH--HH---HHHHhcCCCCEEEEEEEEC
Confidence            599999999999999875  22   33443  456888888874

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=90.36  E-value=0.55  Score=49.43  Aligned_cols=102  Identities=12%  Similarity=0.189  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHhhccCCCCceEEEEEeCCCChhhh-----hhHHHHHHHHhhc---CCceEEEecCCCchhchhhh
Q psy12938        476 QKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACR-----ALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSAT  547 (612)
Q Consensus       476 r~~R~~el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~-----~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~~  547 (612)
                      .+.|.-+|...+|.+.+.+.   ..++++||.+--..-.     .|..++=+||++.   ..+.|.-||..+.. .++++
T Consensus        32 GkDRVi~LneKNfk~~lKky---d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~-klAKK  107 (383)
T PF01216_consen   32 GKDRVIDLNEKNFKRALKKY---DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA-KLAKK  107 (383)
T ss_dssp             SS--CEEE-TTTHHHHHHH----SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH-HHHHH
T ss_pred             CccceEEcchhHHHHHHHhh---cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH-HHHHh
Confidence            44588888888888877653   3677778776432211     1445444555543   57999999998765 78999


Q ss_pred             CCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       548 ~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      +.+...+++-+||+|+.+. +-|.       +++..|-.||.
T Consensus       108 Lgv~E~~SiyVfkd~~~IE-ydG~-------~saDtLVeFl~  141 (383)
T PF01216_consen  108 LGVEEEGSIYVFKDGEVIE-YDGE-------RSADTLVEFLL  141 (383)
T ss_dssp             HT--STTEEEEEETTEEEE-E-S---------SHHHHHHHHH
T ss_pred             cCccccCcEEEEECCcEEE-ecCc-------cCHHHHHHHHH
Confidence            9999999999999999998 4443       45577777764

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=90.31  E-value=0.57  Score=37.87  Aligned_cols=50  Identities=14%  Similarity=0.204  Sum_probs=34.0

Q ss_pred             EEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchh---hhCCCCCCcEEEE
Q psy12938        503 AHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFS---ATFKTSGLPAMLA  558 (612)
Q Consensus       503 vhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~---~~~~i~~lPtllv  558 (612)
                      .-|..++|+.|+.....|++.     ++.|-.++.+..+ ...   ...+...+|++++
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~-~~~~~~~~~g~~~vP~v~~   54 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQP-EAIDYVKAQGFRQVPVIVA   54 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCH-HHHHHHHHcCCcccCEEEE
Confidence            346679999999999998864     5566666655332 222   2347779999755

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=90.18  E-value=0.47  Score=50.58  Aligned_cols=43  Identities=28%  Similarity=0.482  Sum_probs=37.3

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||..+.+.+..++..+++. .+..+.|+|.|..
T Consensus        79 GL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  122 (334)
T TIGR00225        79 GIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG  122 (334)
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence            599999999999999999988888888866 5678999998853

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=90.17  E-value=0.24  Score=54.26  Aligned_cols=46  Identities=26%  Similarity=0.355  Sum_probs=40.6

Q ss_pred             CCCCcceEEEeccCCCCCCCCc-cceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938        321 GAEGLGLSIIGMGVGADAGLEK-LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG  376 (612)
Q Consensus       321 ~~~glG~si~g~~~g~~~~~~~-~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~  376 (612)
                      .-.|+|+.|.-         .+ .++.|.+.++|+||++.| |++||    |||.++.++.
T Consensus        98 ~~~GiG~~i~~---------~~~~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~  148 (406)
T COG0793          98 EFGGIGIELQM---------EDIGGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVS  148 (406)
T ss_pred             cccceeEEEEE---------ecCCCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCC
Confidence            44789999988         23 589999999999999999 99999    8999999975

>TIGR00054 RIP metalloprotease RseP

Probab=89.92  E-value=0.36  Score=53.19  Aligned_cols=81  Identities=19%  Similarity=0.294  Sum_probs=53.8

Q ss_pred             cceEEEEeccCchhcccCCccccc----CCceeeeeccc---------c--------------------cCCCCcccceE
Q psy12938        343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV---------G--------------------ADAGLEKLGIF  389 (612)
Q Consensus       343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~---------~--------------------~~~~~~~~~i~  389 (612)
                      .|.+|..|.++++|++.| |+.||    +||..+.....         +                    ........|..
T Consensus       128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~~dl~~~ia~~~~~v~~~I~r~g~~~~l~v~l~~~~~~~~~g~v  206 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILAERENWTFEVMKELIPRGPKIEPV  206 (420)
T ss_pred             CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCHHHHHHHHHhhcccceEEEEEecCceEecccccceecCCCcCcE
Confidence            478999999999999999 99999    78887643110         0                    00011124789


Q ss_pred             EEEeeccccccccCcceeccCCccc----cchHHHHHHHH
Q psy12938        390 VKTITEAGAAARDGRIQVRRGPKGV----LKDWEQFKQYE  425 (612)
Q Consensus       390 i~~i~~~~~a~~dg~l~~~~~~~gv----~~d~~~f~~~~  425 (612)
                      |..|.++++|++.| |+.||--..|    +++|+.+.+..
T Consensus       207 V~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~~dl~~~l  245 (420)
T TIGR00054       207 LSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSWTDFVSAV  245 (420)
T ss_pred             EEEECCCCHHHHcC-CCCCCEEEEECCEECCCHHHHHHHH
Confidence            99999999998765 5666532222    25566655443

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=89.79  E-value=0.33  Score=52.88  Aligned_cols=50  Identities=28%  Similarity=0.351  Sum_probs=38.1

Q ss_pred             CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938        323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG  376 (612)
Q Consensus       323 ~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~  376 (612)
                      .|+|+.+.-   .........+++|..|.+|++|++.| |++||    |||.++.+++
T Consensus        85 ~GiG~~~~~---~~~~~~~~~g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~  138 (389)
T PLN00049         85 TGVGLEVGY---PTGSDGPPAGLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLS  138 (389)
T ss_pred             eEEEEEEEE---ccCCCCccCcEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCC
Confidence            489999865   11111012379999999999999999 99999    8999998753

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=89.69  E-value=1  Score=37.30  Aligned_cols=59  Identities=20%  Similarity=0.412  Sum_probs=43.1

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch-------------------------------hchhhhCC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG-------------------------------DHFSATFK  549 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~-------------------------------d~~~~~~~  549 (612)
                      |..|+++.|+.|..+.+.|.++...++ +++|...+....+                               .....++.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g   80 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG   80 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence            467999999999999999999975553 5777765432211                               02345788


Q ss_pred             CCCCcEEEEEE
Q psy12938        550 TSGLPAMLAYR  560 (612)
Q Consensus       550 i~~lPtllvyk  560 (612)
                      +.+.||+++..
T Consensus        81 ~~g~Pt~v~~~   91 (98)
T cd02972          81 VTGTPTFVVNG   91 (98)
T ss_pred             CCCCCEEEECC
Confidence            89999998875

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=89.56  E-value=0.6  Score=38.89  Aligned_cols=80  Identities=15%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCH
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFV  581 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~  581 (612)
                      |+-|..+.|.-|..+...|..++..++ +.+-.||.+..+ .+..+|.. .+|.|.+=..+....     .....-.|+.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~-~l~~~Y~~-~IPVl~~~~~~~~~~-----~~~~~~~~d~   73 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDP-ELFEKYGY-RIPVLHIDGIRQFKE-----QEELKWRFDE   73 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTH-HHHHHSCT-STSEEEETT-GGGCT-----SEEEESSB-H
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCH-HHHHHhcC-CCCEEEEcCcccccc-----cceeCCCCCH
Confidence            567888999999999999999877776 677777777655 67789986 689855432111110     1112236778


Q ss_pred             HHHHHHHH
Q psy12938        582 EDVEAFLV  589 (612)
Q Consensus       582 ~~lE~~L~  589 (612)
                      +.|+++|.
T Consensus        74 ~~L~~~L~   81 (81)
T PF05768_consen   74 EQLRAWLE   81 (81)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            99998884

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PRK10638 glutaredoxin 3; Provisional

Probab=89.55  E-value=1.1  Score=37.26  Aligned_cols=60  Identities=13%  Similarity=0.342  Sum_probs=40.8

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeEE
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGNF  568 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~~  568 (612)
                      |+-|..+||+.|+.....|++.     .+.|..++.+..+   +.+.+..+...+|++  |.+|+.++.+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~igG~   66 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIGGC   66 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEeCH
Confidence            4456779999999999999875     4555566654322   233444566789977  5588877644

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=89.51  E-value=3.2  Score=42.70  Aligned_cols=89  Identities=17%  Similarity=0.092  Sum_probs=61.2

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc---------------------------hhchhhh
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV---------------------------GDHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~---------------------------~d~~~~~  547 (612)
                      ..+||+.|| +.||+.|..--+.|.++.++|  .+++++-|..|..                           ...++..
T Consensus        98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka  177 (261)
T PTZ00137         98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS  177 (261)
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence            347888888 799999999888888888887  3566666654421                           0123567


Q ss_pred             CCCC-----CCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        548 FKTS-----GLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       548 ~~i~-----~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      |.+.     .+|+.++.. +|++...++.-   .+-+-..+++-+.|.
T Consensus       178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~---~~~gr~v~eiLr~l~  222 (261)
T PTZ00137        178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYD---LGLGRSVDETLRLFD  222 (261)
T ss_pred             cCCCCcCCceecEEEEECCCCEEEEEEEeC---CCCCCCHHHHHHHHH
Confidence            7774     479988885 89999977643   222335666666664

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=89.29  E-value=1.4  Score=38.09  Aligned_cols=61  Identities=20%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             eEEEEEe----CCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeE
Q psy12938        500 TVIAHLS----SPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGN  567 (612)
Q Consensus       500 ~Vvvhfy----~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~  567 (612)
                      .|||.-.    .+||+.|+.....|..+     ++.|..++.+..+   +.+........+|.+  |-||+.++.
T Consensus        13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~~iGG   80 (97)
T TIGR00365        13 PVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGEFVGG   80 (97)
T ss_pred             CEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCEEEeC
Confidence            4666544    38999999999999886     4556666654322   133334455688887  678887663

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK13190 putative peroxiredoxin; Provisional

Probab=89.23  E-value=3.9  Score=40.25  Aligned_cols=88  Identities=9%  Similarity=0.114  Sum_probs=58.1

Q ss_pred             eEEE-EEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch--------------------------hchhhhCCC
Q psy12938        500 TVIA-HLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG--------------------------DHFSATFKT  550 (612)
Q Consensus       500 ~Vvv-hfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~--------------------------d~~~~~~~i  550 (612)
                      ++|+ .|++.||+.|..--+.|.++..+|.  +++++-|..+...                          -.++..|++
T Consensus        29 ~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv  108 (202)
T PRK13190         29 WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNL  108 (202)
T ss_pred             EEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCC
Confidence            5555 7899999999998888888877774  5777766544210                          123456776


Q ss_pred             C------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        551 S------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       551 ~------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .      .+|+++++ ++|++....+.-. ..  +-..+++.+.|..
T Consensus       109 ~~~~~g~~~p~~fiId~~G~I~~~~~~~~-~~--gr~~~ellr~l~~  152 (202)
T PRK13190        109 IDENSGATVRGVFIIDPNQIVRWMIYYPA-ET--GRNIDEIIRITKA  152 (202)
T ss_pred             ccccCCcEEeEEEEECCCCEEEEEEEeCC-CC--CCCHHHHHHHHHH
Confidence            3      47999998 5888877554432 22  3356777776653

>PRK13599 putative peroxiredoxin; Provisional

Probab=89.22  E-value=4.9  Score=40.06  Aligned_cols=88  Identities=15%  Similarity=0.151  Sum_probs=61.6

Q ss_pred             e-EEEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCch--------------------------hchhhhCCC
Q psy12938        500 T-VIAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVG--------------------------DHFSATFKT  550 (612)
Q Consensus       500 ~-Vvvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~--------------------------d~~~~~~~i  550 (612)
                      + |++.|+++||+.|..--+.|.+++.+|  .+++++-|..+...                          ..++..|++
T Consensus        30 ~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~  109 (215)
T PRK13599         30 WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGM  109 (215)
T ss_pred             eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCC
Confidence            5 567999999999999999999998888  36888877655321                          023456665


Q ss_pred             C-------CCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        551 S-------GLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       551 ~-------~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .       .+|+++++- +|++...++.. ...|  -..++|.+.|..
T Consensus       110 ~~~~~~~~~~R~tfIID~dG~Ir~~~~~p-~~~g--r~~~eilr~l~~  154 (215)
T PRK13599        110 IHPGKGTNTVRAVFIVDDKGTIRLIMYYP-QEVG--RNVDEILRALKA  154 (215)
T ss_pred             CccCCCCceeeEEEEECCCCEEEEEEEcC-CCCC--CCHHHHHHHHHH
Confidence            2       579988884 89988876533 2223  356777777754

>KOG1752|consensus

Probab=89.12  E-value=0.69  Score=40.73  Aligned_cols=62  Identities=23%  Similarity=0.385  Sum_probs=41.9

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhch----hhhCCCCCCcEEEEEECCEEeeE
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHF----SATFKTSGLPAMLAYRGGEVVGN  567 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~----~~~~~i~~lPtllvyk~G~~~~~  567 (612)
                      -||-|..+||+.|..+...|..+   -...+++.+|....+.++    .+--.-+.+|.+  |-+|+.+|.
T Consensus        15 ~VVifSKs~C~~c~~~k~ll~~~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk~iGG   80 (104)
T KOG1752|consen   15 PVVIFSKSSCPYCHRAKELLSDL---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGKFIGG   80 (104)
T ss_pred             CEEEEECCcCchHHHHHHHHHhC---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCEEEcC
Confidence            34558999999999999888883   245678888766443233    222234588875  568888764

>TIGR00225 prc C-terminal peptidase (prc)

Probab=89.10  E-value=0.3  Score=52.01  Aligned_cols=43  Identities=28%  Similarity=0.417  Sum_probs=36.8

Q ss_pred             CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       323 ~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      .|||+.+.-         .+.+++|..|.++++|++.| |++||    |||..+.+.
T Consensus        51 ~~lG~~~~~---------~~~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~   97 (334)
T TIGR00225        51 EGIGIQVGM---------DDGEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGM   97 (334)
T ss_pred             EEEEEEEEE---------ECCEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCC
Confidence            478998866         23379999999999999999 99999    899998764

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>PRK13191 putative peroxiredoxin; Provisional

Probab=88.92  E-value=3.5  Score=41.11  Aligned_cols=88  Identities=11%  Similarity=0.081  Sum_probs=60.0

Q ss_pred             eEE-EEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCchh--------------------------chhhhCCC
Q psy12938        500 TVI-AHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVGD--------------------------HFSATFKT  550 (612)
Q Consensus       500 ~Vv-vhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~d--------------------------~~~~~~~i  550 (612)
                      |+| +.|+++||+.|..--+.|.+++.+|  .+++++-|..|....                          .++..|++
T Consensus        35 ~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv  114 (215)
T PRK13191         35 WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGM  114 (215)
T ss_pred             cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCC
Confidence            555 4889999999999999999999888  468888776653210                          22345554


Q ss_pred             C-------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        551 S-------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       551 ~-------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .       .+|++++. ++|++...+++-... |  -..+++-+.|..
T Consensus       115 ~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~-g--r~~~eilr~l~a  159 (215)
T PRK13191        115 IHAESSTATVRAVFIVDDKGTVRLILYYPMEI-G--RNIDEILRAIRA  159 (215)
T ss_pred             cccccCCceeEEEEEECCCCEEEEEEecCCCC-C--CCHHHHHHHHHH
Confidence            2       36777777 589988877664222 2  356777777653

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=88.78  E-value=0.81  Score=39.03  Aligned_cols=39  Identities=13%  Similarity=0.228  Sum_probs=26.5

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHH-HhcCCCeEEEEEeecCC
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASV-LRNTSGLVRFLIGREKD   41 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~-Lk~~~~~v~l~v~r~~~   41 (612)
                      +||.|++|||+.+....  ..-++ ..++++.|.|+|.+...
T Consensus        42 ~GD~I~aInG~~v~~~~--~~~~lL~~~agk~V~Ltv~~~~~   81 (88)
T PF14685_consen   42 EGDYILAINGQPVTADA--NPYRLLEGKAGKQVLLTVNRKPG   81 (88)
T ss_dssp             TT-EEEEETTEE-BTTB---HHHHHHTTTTSEEEEEEE-STT
T ss_pred             CCCEEEEECCEECCCCC--CHHHHhcccCCCEEEEEEecCCC
Confidence            59999999999997442  23344 44688899999988753

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=88.76  E-value=0.33  Score=39.97  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=26.6

Q ss_pred             cceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938        343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG  374 (612)
Q Consensus       343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g  374 (612)
                      .|++|..|.+|++|+. | |+.||    +||..+..
T Consensus         8 ~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~   41 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE   41 (79)
T ss_pred             cCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC
Confidence            3799999999999986 7 99999    89988765

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=88.74  E-value=0.57  Score=45.60  Aligned_cols=39  Identities=5%  Similarity=0.075  Sum_probs=32.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL  537 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~  537 (612)
                      +.+|+|.|||+||+.|+.| +.|..|.++|.  ++.++-++.
T Consensus        25 GKvvLVvf~AS~C~~~~q~-~~L~~L~~~y~~~gl~Vlg~p~   65 (183)
T PRK10606         25 GNVLLIVNVASKCGLTPQY-EQLENIQKAWADQGFVVLGFPC   65 (183)
T ss_pred             CCEEEEEEEeCCCCCcHHH-HHHHHHHHHHhhCCeEEEEeec
Confidence            4589999999999999864 57999999985  578887765

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=88.41  E-value=1.6  Score=38.82  Aligned_cols=75  Identities=15%  Similarity=0.247  Sum_probs=55.7

Q ss_pred             CChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCC--C--CcEEEEEECCEEeeEEEeccccccCCC-CH
Q psy12938        509 SLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTS--G--LPAMLAYRGGEVVGNFVRLGEELGEGY-FV  581 (612)
Q Consensus       509 ~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~--~--lPtllvyk~G~~~~~~vg~~~~~g~~~-~~  581 (612)
                      .-..-..+...+.++|++|.  .+.|+-+|++... ...+.|.+.  .  .|++.++....  .++.     ...++ +.
T Consensus        29 ~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~-~~l~~fgl~~~~~~~P~~~i~~~~~--~KY~-----~~~~~~t~  100 (111)
T cd03073          29 NPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS-HELEEFGLDFSGGEKPVVAIRTAKG--KKYV-----MEEEFSDV  100 (111)
T ss_pred             ChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH-HHHHHcCCCcccCCCCEEEEEeCCC--CccC-----CCcccCCH
Confidence            44555778899999999997  6999999988654 355778876  3  99999977432  2333     22346 89


Q ss_pred             HHHHHHHHHC
Q psy12938        582 EDVEAFLVEA  591 (612)
Q Consensus       582 ~~lE~~L~~~  591 (612)
                      +.|..|+..+
T Consensus       101 e~i~~F~~~f  110 (111)
T cd03073         101 DALEEFLEDF  110 (111)
T ss_pred             HHHHHHHHHh
Confidence            9999999764

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=88.41  E-value=0.7  Score=39.39  Aligned_cols=41  Identities=15%  Similarity=0.306  Sum_probs=26.2

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~~   96 (612)
                      .+++||.|++|||+.+...  .....+|.+ ++..|.|+|.+..
T Consensus        39 ~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~~~~   80 (88)
T PF14685_consen   39 DVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVNRKP   80 (88)
T ss_dssp             ---TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE-ST
T ss_pred             CCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEecCC
Confidence            6889999999999999843  335666655 5678999997643

>PF12812 PDZ_1: PDZ-like domain

Probab=88.27  E-value=3.4  Score=34.39  Aligned_cols=72  Identities=13%  Similarity=0.098  Sum_probs=52.3

Q ss_pred             CeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCchhhHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHH
Q psy12938          3 DQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLR   82 (612)
Q Consensus         3 D~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~~i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~   82 (612)
                      ||.++|-|-.+..++|+.|.+.-..++  +.. +.+.. ..     --..|++..|-.|.+|||+.+.  +.++-+++++
T Consensus         5 ~r~v~~~Ga~f~~Ls~q~aR~~~~~~~--gv~-v~~~~-g~-----~~~~~~i~~g~iI~~Vn~kpt~--~Ld~f~~vvk   73 (78)
T PF12812_consen    5 SRFVEVCGAVFHDLSYQQARQYGIPVG--GVY-VAVSG-GS-----LAFAGGISKGFIITSVNGKPTP--DLDDFIKVVK   73 (78)
T ss_pred             CEEEEEcCeecccCCHHHHHHhCCCCC--EEE-EEecC-CC-----hhhhCCCCCCeEEEeECCcCCc--CHHHHHHHHH
Confidence            789999999999999999999877776  222 22221 11     1123458999999999999998  5666677766


Q ss_pred             hCC
Q psy12938         83 NTS   85 (612)
Q Consensus        83 ~~~   85 (612)
                      +.+
T Consensus        74 ~ip   76 (78)
T PF12812_consen   74 KIP   76 (78)
T ss_pred             hCC
Confidence            543

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=88.22  E-value=2.4  Score=39.79  Aligned_cols=78  Identities=9%  Similarity=0.217  Sum_probs=56.1

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHH--hhc--CCceEEEecCCC---------------chhchhhhCCCCCCcEEE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELS--RSH--TNVKFVSVPLGC---------------VGDHFSATFKTSGLPAML  557 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA--~~~--~~vkF~ki~~~~---------------~~d~~~~~~~i~~lPtll  557 (612)
                      .+...++-|-.+.|.-|..|...+....  ++|  ++.-|+.++++-               ...++++.|.+++-||++
T Consensus        41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv  120 (182)
T COG2143          41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV  120 (182)
T ss_pred             cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence            4558999999999999999987664432  222  335555555321               123678999999999999


Q ss_pred             EE-ECCEEeeEEEecccc
Q psy12938        558 AY-RGGEVVGNFVRLGEE  574 (612)
Q Consensus       558 vy-k~G~~~~~~vg~~~~  574 (612)
                      +| ++|+.+..+=|+.+.
T Consensus       121 Ffdk~Gk~Il~lPGY~pp  138 (182)
T COG2143         121 FFDKTGKTILELPGYMPP  138 (182)
T ss_pred             EEcCCCCEEEecCCCCCH
Confidence            99 458999998887543

>PRK10824 glutaredoxin-4; Provisional

Probab=88.20  E-value=0.61  Score=41.83  Aligned_cols=87  Identities=14%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             eEEEEEeC----CCChhhhhhHHHHHHHHhhcCCceEEEecCCCc---hhchhhhCCCCCCcEEEEEECCEEeeEEEecc
Q psy12938        500 TVIAHLSS----PSLPACRALNSSLAELSRSHTNVKFVSVPLGCV---GDHFSATFKTSGLPAMLAYRGGEVVGNFVRLG  572 (612)
Q Consensus       500 ~Vvvhfy~----~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~---~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~  572 (612)
                      .|||....    |||+.|+..-..|..+.-.     |-.++.+..   .+.+.+.-.-..+|.  ||-||+.+|..--+.
T Consensus        16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~-----~~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI~G~~IGG~ddl~   88 (115)
T PRK10824         16 PILLYMKGSPKLPSCGFSAQAVQALSACGER-----FAYVDILQNPDIRAELPKYANWPTFPQ--LWVDGELVGGCDIVI   88 (115)
T ss_pred             CEEEEECCCCCCCCCchHHHHHHHHHHcCCC-----ceEEEecCCHHHHHHHHHHhCCCCCCe--EEECCEEEcChHHHH
Confidence            45554443    6999999999999987433     333443322   122323334456675  577999888543332


Q ss_pred             ccccCCCCHHHHHHHHHHCCcccCC
Q psy12938        573 EELGEGYFVEDVEAFLVEAGLLRAG  597 (612)
Q Consensus       573 ~~~g~~~~~~~lE~~L~~~g~l~~~  597 (612)
                      ...-    ...|+.+|.+.|+..+.
T Consensus        89 ~l~~----~G~L~~lL~~~~~~~~~  109 (115)
T PRK10824         89 EMYQ----RGELQQLIKETAAKYKS  109 (115)
T ss_pred             HHHH----CCCHHHHHHHHHhhhcc
Confidence            2211    13477777777775443

>KOG2603|consensus

Probab=87.78  E-value=1.2  Score=46.17  Aligned_cols=105  Identities=13%  Similarity=0.260  Sum_probs=75.4

Q ss_pred             HHHHHHhhccCCCCceEEEEEeC----CCChhhhhhHHHHHHHHhhc----C-----CceEEEecCCCchhchhhhCCCC
Q psy12938        485 DRLFLSEIDSEPRHITVIAHLSS----PSLPACRALNSSLAELSRSH----T-----NVKFVSVPLGCVGDHFSATFKTS  551 (612)
Q Consensus       485 ~~~~~~~V~~~~~~~~Vvvhfy~----~~~~~C~~m~~~l~~LA~~~----~-----~vkF~ki~~~~~~d~~~~~~~i~  551 (612)
                      +..|-.-+...+++-.+||-|.|    ..|.-|+..+.-+..+|..+    +     .+-||.||.++.+ ..-+.|...
T Consensus        47 ~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p-~~Fq~l~ln  125 (331)
T KOG2603|consen   47 DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP-QVFQQLNLN  125 (331)
T ss_pred             CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH-HHHHHhccc
Confidence            33455556677788889999988    58999999999999999764    2     3679999999887 677999999


Q ss_pred             CCcEEEEEE--CCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        552 GLPAMLAYR--GGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       552 ~lPtllvyk--~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      ++|++.+|+  .|....  -...+...-++..+++.+|....-
T Consensus       126 ~~P~l~~f~P~~~n~~~--s~~~d~~~~g~~Ae~iaqfv~~~t  166 (331)
T KOG2603|consen  126 NVPHLVLFSPAKGNKKR--SDQMDQQDLGFEAEQIAQFVADRT  166 (331)
T ss_pred             CCCeEEEeCCCcccccc--CccchhhhcchhHHHHHHHHHHhh
Confidence            999999993  233331  111122223455788888876543

>PRK11186 carboxy-terminal protease; Provisional

Probab=87.56  E-value=0.78  Score=53.25  Aligned_cols=43  Identities=21%  Similarity=0.344  Sum_probs=36.6

Q ss_pred             cccCCCCEEEEECC-----eecCCCCHHHHHHHHHhC-CCceEEEEeec
Q psy12938         53 QSLQVNDQIIEVDG-----KSLVGVTQEYAASVLRNT-SGLVRFLIGRE   95 (612)
Q Consensus        53 G~L~~GD~il~VNg-----~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~   95 (612)
                      ++|++||+|++||+     .++.+++.++++.+|+.. +..|+|+|.|.
T Consensus       272 ~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        272 KKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             CCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            47999999999994     467789999999999875 56799999874

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=87.37  E-value=0.4  Score=40.07  Aligned_cols=32  Identities=19%  Similarity=0.410  Sum_probs=29.0

Q ss_pred             cceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      .|++|..|.++++|++.| |+.||    +||..+...
T Consensus        24 ~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~   59 (90)
T cd00987          24 KGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV   59 (90)
T ss_pred             CEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH
Confidence            489999999999999998 99999    899988764

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=87.31  E-value=1.2  Score=45.80  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=34.0

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~   96 (612)
                      +|+.||.|++|||.++.  +.+++..++..  .+..++|+|.|.-
T Consensus       208 GLr~GDvIv~ING~~i~--~~~~~~~~l~~~~~~~~v~l~V~R~G  250 (259)
T TIGR01713       208 GLQDGDIAVALNGLDLR--DPEQAFQALQMLREETNLTLTVERDG  250 (259)
T ss_pred             CCCCCCEEEEECCEEcC--CHHHHHHHHHhcCCCCeEEEEEEECC
Confidence            79999999999999998  56667777766  3468999999864

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=87.03  E-value=1.1  Score=42.61  Aligned_cols=72  Identities=11%  Similarity=0.173  Sum_probs=40.7

Q ss_pred             CceEEEEEeCCCChhhhhhHH-HHHH--HHhhcCCceEE--EecCCCchhchhhhC--------CCCCCcEEEEE-ECCE
Q psy12938        498 HITVIAHLSSPSLPACRALNS-SLAE--LSRSHTNVKFV--SVPLGCVGDHFSATF--------KTSGLPAMLAY-RGGE  563 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~-~l~~--LA~~~~~vkF~--ki~~~~~~d~~~~~~--------~i~~lPtllvy-k~G~  563 (612)
                      +.+|+++|+.+||.-|+.|+. .|..  +|+ +-+-.|+  |+|.++.| .+...|        ...+-|+.++. -+|+
T Consensus        37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~-~lN~~FI~VkvDree~P-did~~y~~~~~~~~~~gGwPl~vfltPdg~  114 (163)
T PF03190_consen   37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAE-YLNRNFIPVKVDREERP-DIDKIYMNAVQAMSGSGGWPLTVFLTPDGK  114 (163)
T ss_dssp             T--EEEEEE-TT-HHHHHHHHHTTT-HHHHH-HHHHH-EEEEEETTT-H-HHHHHHHHHHHHHHS---SSEEEEE-TTS-
T ss_pred             CCcEEEEEEecCCcchhhhcccCcCCHHHHH-HHhCCEEEEEeccccCc-cHHHHHHHHHHHhcCCCCCCceEEECCCCC
Confidence            448999999999999999975 3322  222 2233455  56777776 566666        67899988877 4688


Q ss_pred             EeeEEEec
Q psy12938        564 VVGNFVRL  571 (612)
Q Consensus       564 ~~~~~vg~  571 (612)
                      .+....-+
T Consensus       115 p~~~~tY~  122 (163)
T PF03190_consen  115 PFFGGTYF  122 (163)
T ss_dssp             EEEEESS-
T ss_pred             eeeeeeec
Confidence            77654333

; PDB: 3IRA_A.

>PRK13189 peroxiredoxin; Provisional

Probab=86.87  E-value=5.2  Score=40.10  Aligned_cols=88  Identities=9%  Similarity=0.116  Sum_probs=58.1

Q ss_pred             ceEE-EEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCch--------------------------hchhhhCC
Q psy12938        499 ITVI-AHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVG--------------------------DHFSATFK  549 (612)
Q Consensus       499 ~~Vv-vhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~--------------------------d~~~~~~~  549 (612)
                      .||| +.|+++||+.|..--+.|..++.+|  .+++++-|..+...                          ..++..|.
T Consensus        36 k~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~yg  115 (222)
T PRK13189         36 KWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLG  115 (222)
T ss_pred             CeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhC
Confidence            3555 5788999999999888899998888  36777766544210                          02345666


Q ss_pred             CC-------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        550 TS-------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       550 i~-------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      +.       .+|++++. ++|.+...++.-. ..|  -..+++.+.|.
T Consensus       116 v~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~-~~g--r~~~eilr~l~  160 (222)
T PRK13189        116 MISPGKGTNTVRAVFIIDPKGIIRAILYYPQ-EVG--RNMDEILRLVK  160 (222)
T ss_pred             CCccccCCCceeEEEEECCCCeEEEEEecCC-CCC--CCHHHHHHHHH
Confidence            53       46777777 4899888776542 222  34567777765

>PRK11186 carboxy-terminal protease; Provisional

Probab=86.41  E-value=0.52  Score=54.67  Aligned_cols=37  Identities=16%  Similarity=0.271  Sum_probs=30.8

Q ss_pred             CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CC
Q psy12938        323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GL  368 (612)
Q Consensus       323 ~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vn  368 (612)
                      .|+|+.+.-         .+.+++|.+|+|||||++.+.|++||    ||
T Consensus       244 ~GIGa~l~~---------~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn  284 (667)
T PRK11186        244 EGIGAVLQM---------DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVG  284 (667)
T ss_pred             eEEEEEEEE---------eCCeEEEEEccCCChHHHhCCCCCCCEEEEEC
Confidence            578888865         23369999999999999995699999    77

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=86.25  E-value=1.4  Score=45.60  Aligned_cols=41  Identities=10%  Similarity=0.222  Sum_probs=34.8

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~   96 (612)
                      +||.||.+.+|||.+|.  ..+++.++++.-  ...++|+|.|.-
T Consensus       224 GLq~GDva~sING~dL~--D~~qa~~l~~~L~~~tei~ltVeRdG  266 (276)
T PRK09681        224 GFKEGDIAIALNQQDFT--DPRAMIALMRQLPSMDSIQLTVLRKG  266 (276)
T ss_pred             CCCCCCEEEEeCCeeCC--CHHHHHHHHHHhccCCeEEEEEEECC
Confidence            79999999999999998  667788888763  477999999864

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=84.49  E-value=7.4  Score=39.80  Aligned_cols=30  Identities=13%  Similarity=0.277  Sum_probs=24.9

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhh
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRS  526 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~  526 (612)
                      ....+|+-|.++.|+.|+.+...+..+...
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~  145 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS  145 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence            344788899999999999999998876554

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=84.12  E-value=3.3  Score=35.07  Aligned_cols=79  Identities=11%  Similarity=0.109  Sum_probs=53.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      ...+||-|+.+++.   .+...|.++|..+. .++|.-+...    .+...+.+. .|++++||....-  .+-+   .|
T Consensus        17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~----~~~~~~~~~-~~~i~l~~~~~~~--~~~y---~g   83 (97)
T cd02981          17 DDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK----EVAKKLKVK-PGSVVLFKPFEEE--PVEY---DG   83 (97)
T ss_pred             CCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH----HHHHHcCCC-CCceEEeCCcccC--CccC---CC
Confidence            34678888888876   57788899999985 7999877632    344566654 4999999876211  1112   22


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                       .++.++|+.|+..
T Consensus        84 -~~~~~~l~~fi~~   96 (97)
T cd02981          84 -EFTEESLVEFIKD   96 (97)
T ss_pred             -CCCHHHHHHHHHh
Confidence             3457899999865

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=83.23  E-value=2.4  Score=46.55  Aligned_cols=60  Identities=17%  Similarity=0.333  Sum_probs=42.4

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchh--chhhh---------CCCCCCcEEEEEECCEEeeEE
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGD--HFSAT---------FKTSGLPAMLAYRGGEVVGNF  568 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d--~~~~~---------~~i~~lPtllvyk~G~~~~~~  568 (612)
                      |+-|..+||+.|+.....|...     ++.|..|+.+..+.  .+..+         .+.+.+|++++  ||+.++.+
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~igGf   74 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIGGY   74 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEeCc
Confidence            5668899999999999998885     67888888774431  11112         35678999865  78765544

>KOG3938|consensus

Probab=82.89  E-value=0.75  Score=46.47  Aligned_cols=43  Identities=23%  Similarity=0.343  Sum_probs=37.0

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~   96 (612)
                      .+++||.|-+|||+++.|..|-+++.+||.-  +.+.+|.+..++
T Consensus       167 ~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLiePk  211 (334)
T KOG3938|consen  167 AICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEPK  211 (334)
T ss_pred             heeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeeccc
Confidence            6899999999999999999999999999985  566777666443

>KOG3542|consensus

Probab=82.87  E-value=0.59  Score=52.64  Aligned_cols=38  Identities=29%  Similarity=0.566  Sum_probs=32.7

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEE
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI   92 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v   92 (612)
                      +|+.||+|++|||++.++.+...|.++|++.- .++|+|
T Consensus       579 GlKRgDqilEVNgQnfenis~~KA~eiLrnnt-hLtltv  616 (1283)
T KOG3542|consen  579 GLKRGDQILEVNGQNFENISAKKAEEILRNNT-HLTLTV  616 (1283)
T ss_pred             hhhhhhhhhhccccchhhhhHHHHHHHhcCCc-eEEEEE
Confidence            79999999999999999999999999999752 344444

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=82.18  E-value=2.8  Score=39.70  Aligned_cols=69  Identities=13%  Similarity=0.225  Sum_probs=50.4

Q ss_pred             hhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938        515 ALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       515 ~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~  593 (612)
                      .+-..|.++|+.+. .+.|+.+...    .+.+.+.+.. |++++||.+...  .+-+   -|..++.++|..|+..+..
T Consensus         7 ~~~~~f~~~A~~~~~~~~F~~~~~~----~~~~~~~~~~-p~i~~~k~~~~~--~~~y---~~~~~~~~~l~~fI~~~~~   76 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKGDYQFGVTFNE----ELAKKYGIKE-PTIVVYKKFDEK--PVVY---DGDKFTPEELKKFIKKNSF   76 (184)
T ss_dssp             HHHHHHHHHHHHHTTTSEEEEEE-H----HHHHHCTCSS-SEEEEEECTTTS--EEEE---SSSTTSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhCcCCcEEEEEcHH----HHHHHhCCCC-CcEEEeccCCCC--ceec---ccccCCHHHHHHHHHHhcc
Confidence            34567889999997 7999988632    4667899988 999999984331  1112   2225789999999988764

...

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=80.79  E-value=4.2  Score=33.81  Aligned_cols=58  Identities=17%  Similarity=0.351  Sum_probs=37.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----hchhhhC-CCCCCcEEEEEECCEEee
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----DHFSATF-KTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----d~~~~~~-~i~~lPtllvyk~G~~~~  566 (612)
                      |+-|..+||+.|+.....|...     .+.|.-++.+..+    .+..... ..+.+|.+++  ||+.++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ig   65 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKHVG   65 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEEEe
Confidence            4457779999999999998864     4566665554322    1233344 6789998754  665444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	612
3hvq_C	170	Crystal Structure Of A Complex Between Protein Phos		7e-34
3egh_C	170	Crystal Structure Of A Complex Between Protein Phos		1e-32
3egg_C	170	Crystal Structure Of A Complex Between Protein Phos		1e-32
1b9x_C	246	Structural Analysis Of Phosducin And Its Phosphoryl		2e-18
1b9y_C	246	Structural Analysis Of Phosducin And Its Phosphoryl		3e-18
1a0r_P	245	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-17
2trc_P	217	PhosducinTRANSDUCIN BETA-Gamma Complex Length = 217		2e-16
2g5m_B	113	Spinophilin Pdz Domain Length = 113		6e-16
2g5m_B	113	Spinophilin Pdz Domain Length = 113		8e-15
2g5m_B	113	Spinophilin Pdz Domain Length = 113		1e-13
1wf8_A	107	Solution Structure Of The Pdz Domain Of Spinophilin		2e-15
1wf8_A	107	Solution Structure Of The Pdz Domain Of Spinophilin		5e-14
2fn5_A	94	Nmr Structure Of The Neurabin Pdz Domain (502-594)		5e-15
2fn5_A	94	Nmr Structure Of The Neurabin Pdz Domain (502-594)		6e-14
2dbc_A	135	Solution Structure Of The Thioredoxin-Like Domain O		1e-06
3evi_A	118	Crystal Structure Of The Thioredoxin-Fold Domain Of		7e-06
2iwn_A	97	3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz		1e-04
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		2e-04

>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Neurabin Length = 170

Iteration: 1
 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 111/200 (55%), Gaps = 66/200 (33%)
Query: 180 HYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGH 239
           +YY+    + E+ GLP           E ++P  +N K+KFS APIK             
Sbjct: 10  NYYQPDMEYSEIVGLPQ----------EEEIP--ANRKIKFSCAPIK------------- 44
Query: 240 MVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAAS 299
                                                V++T+S  +YDRRN+DVDPVAAS
Sbjct: 45  -------------------------------------VFNTYSNEDYDRRNDDVDPVAAS 67
Query: 300 AEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARD 359
           AEYELEKRVEKL L  VEL K  +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RD
Sbjct: 68  AEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRD 127
Query: 360 GRIQGAEGL----GLSIIGM 375
           GRIQ  + +    G+S++G+
Sbjct: 128 GRIQVNDQIVEVDGISLVGV 147

>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of Spinophilin And The Small Natural Molecular Toxin Nodularin-R Length = 170

Iteration: 1
 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 76/87 (87%)
Query: 277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
           V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct: 45  VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 104
Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQ 363
           D GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 105 DMGLEKLGIFVKTVTEGGAAHRDGRIQ 131

>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase 1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of Spinophilin Length = 170

Iteration: 1
 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/87 (78%), Positives = 76/87 (87%)
Query: 277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
           V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct: 45  VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 104
Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQ 363
           D GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 105 DMGLEKLGIFVKTVTEGGAAHRDGRIQ 131

>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation- Regulated Interaction With Transducin Length = 246

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 100/227 (44%), Gaps = 62/227 (27%)
Query: 410 GPKGVLKDWEQFK-------------------QYECQMRRDKE----LQRLAQIQKLALT 446
           GPKGV+ DW +FK                       Q R DK+    + R  +IQ+  L 
Sbjct: 21  GPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMEIQEYELI 80
Query: 447 CQSSXXXXXXXXXXXXXXXXXDDGFLLEYQKEKMKQMYDRL-----------------FL 489
            Q                   D+G L +Y+++ M+ M+ +L                 FL
Sbjct: 81  HQDKE----------------DEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFL 124
Query: 490 SEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSAT 547
             I+ E +  T++ ++    +  C ALNSSL  L+  +  VKF  +     G  D FS+ 
Sbjct: 125 ETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSD 184
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
                LP +L Y+GGE++ NF+ + E+  E +F  DVE+FL E GLL
Sbjct: 185 V----LPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLL 227

>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation- Regulated Interaction With Transducin Beta-Gamma Length = 246

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 99/227 (43%), Gaps = 62/227 (27%)
Query: 410 GPKGVLKDWEQFK-------------------QYECQMRRDKE----LQRLAQIQKLALT 446
           GPKGV+ DW +FK                       Q R DK+    + R   IQ+  L 
Sbjct: 21  GPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELI 80
Query: 447 CQSSXXXXXXXXXXXXXXXXXDDGFLLEYQKEKMKQMYDRL-----------------FL 489
            Q                   D+G L +Y+++ M+ M+ +L                 FL
Sbjct: 81  HQDKE----------------DEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFL 124
Query: 490 SEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSAT 547
             I+ E +  T++ ++    +  C ALNSSL  L+  +  VKF  +     G  D FS+ 
Sbjct: 125 ETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSD 184
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
                LP +L Y+GGE++ NF+ + E+  E +F  DVE+FL E GLL
Sbjct: 185 V----LPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLL 227

>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 245

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 62/243 (25%)
Query: 410 GPKGVLKDWEQFK-------------------QYECQMRRDKE----LQRLAQIQKLALT 446
           GPKGV+ DW +FK                       Q R DK+      R   +Q+  L 
Sbjct: 21  GPKGVINDWRKFKLESEDSDSVAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYELI 80
Query: 447 CQSSXXXXXXXXXXXXXXXXXDDGFLLEYQKEKMKQMYDRL-----------------FL 489
            +                   D+  L +Y+++ M+ M+ +L                 FL
Sbjct: 81  HKDKE----------------DENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFL 124
Query: 490 SEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSAT 547
             I+ E +  T++ H+    +  C ALNSSL  L+  +  VKF  +     G  D FS+ 
Sbjct: 125 ETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNTGAGDRFSSD 184
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTV 607
                LP +L Y+GGE++ NF+ + E+L E +F  DVE+FL E GLL    +  + +  +
Sbjct: 185 V----LPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKEMHVLEQTNM 240
Query: 608 DDD 610
           ++D
Sbjct: 241 EED 243

>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex Length = 217

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 97/227 (42%), Gaps = 62/227 (27%)
Query: 410 GPKGVLKDWEQFK-------------------QYECQMRRDKELQ----RLAQIQKLALT 446
           GPKGV+ DW +FK                       Q R DK+ +    R   IQ+  L 
Sbjct: 8   GPKGVINDWRKFKLESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERXSRKXSIQEYELI 67
Query: 447 CQSSXXXXXXXXXXXXXXXXXDDGFLLEYQKEKMKQMYDRL-----------------FL 489
            Q                   D+G L +Y+++  +  + +L                 FL
Sbjct: 68  HQDKE----------------DEGCLRKYRRQCXQDXHQKLSFGPRYGFVYELETGEQFL 111
Query: 490 SEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSAT 547
             I+ E +  T++ ++    +  C ALNSSL  L+  +  VKF  +     G  D FS+ 
Sbjct: 112 ETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPXVKFCKIRASNTGAGDRFSSD 171
Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
                LP +L Y+GGE++ NF+ + E+  E +F  DVE+FL E GLL
Sbjct: 172 V----LPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLL 214

>pdb|2G5M|B Chain B, Spinophilin Pdz Domain Length = 113

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/58 (68%), Positives = 49/58 (84%)
Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 112
           +QVND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE+    SEVAQLI+Q+L+
Sbjct: 54  IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLE 111

>pdb|2G5M|B Chain B, Spinophilin Pdz Domain Length = 113

Iteration: 1
 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 44/53 (83%)
Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L  VEL K +EGLG+SIIGMG GAD GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 3   MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQ 55

>pdb|2G5M|B Chain B, Spinophilin Pdz Domain Length = 113

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 39/43 (90%)
Query: 365 AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +EGLG+SIIGMG GAD GLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 14  SEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 56

>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of SpinophilinNEURABINII PROTEIN Length = 107

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/53 (79%), Positives = 45/53 (84%)
Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           L L  VEL K  +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 8   LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 60

>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of SpinophilinNEURABINII PROTEIN Length = 107

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/42 (88%), Positives = 40/42 (95%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 20  DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 61

>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594) Length = 94

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 45/53 (84%)
Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L  VEL K  +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 3   MELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 55

>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594) Length = 94

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/42 (88%), Positives = 40/42 (95%)
Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 15  DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 56

>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of Phosducin-Like Protein 2(Pdcl2) Length = 135

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 479 KMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG 538
           +++++    +++E+ +  + + V+ HL   S+P C  +N  L+ L+R     KFV   + 
Sbjct: 11  ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVN 70
Query: 539 CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRA 596
              +H    +  + LP +  Y+ G++ G F+ + E  G    +E++E  L E G +++
Sbjct: 71  SCIEH----YHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGAIQS 124

>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of Human Phosducin- Like Protein 2 Length = 118

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 479 KMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG 538
           +++++    +++E+ +    + VI HL   S+P C  +N  L+ L+R     KFV   + 
Sbjct: 4   ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVN 63
Query: 539 CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLR 595
               H    +  + LP +  Y+ G++   F+ + E  G    +E++E  L E G ++
Sbjct: 64  SCIQH----YHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGAIQ 116

>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp Target) Length = 97

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL K  +GLG++I G  +G D  LE  GIFVK+IT++ A   DGRIQ
Sbjct: 8   VELTKNVQGLGITIAGY-IG-DKKLEPSGIFVKSITKSSAVEHDGRIQ 53

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 302 YELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR 361
           Y + ++     ++ ++L+KG +GLG SI G GVG         I+V  I E GAA +DGR
Sbjct: 144 YVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGR 202
Query: 362 IQ-GAEGLGLSIIGM 375
           +Q G + L ++ +G+
Sbjct: 203 LQIGDKILAVNSVGL 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	612
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	3e-38
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	2e-36
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	3e-26
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	4e-13
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	8e-12
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	2e-23
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	7e-22
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	4e-19
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	8e-18
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	8e-16
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	3e-13
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-18
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	2e-16
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-08
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	4e-16
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	1e-13
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	6e-13
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	1e-11
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	9e-15
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	1e-06
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	1e-04
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-04
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	3e-04
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	5e-04
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-14
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	1e-11
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	2e-11
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	3e-10
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	2e-14
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	2e-13
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	5e-12
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	6e-12
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	2e-14
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	2e-11
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	2e-10
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	4e-09
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	3e-14
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	8e-11
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	3e-10
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	6e-09
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	3e-14
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	8e-11
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	1e-10
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-09
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-14
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-07
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-06
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	8e-06
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	4e-05
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	9e-05
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	9e-14
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	5e-12
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	3e-11
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	1e-10
2fne_A	117	Multiple PDZ domain protein; structural protein, s	1e-13
2fne_A	117	Multiple PDZ domain protein; structural protein, s	9e-12
2fne_A	117	Multiple PDZ domain protein; structural protein, s	3e-11
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-10
2awx_A	105	Synapse associated protein 97; membrane protein, s	1e-13
2awx_A	105	Synapse associated protein 97; membrane protein, s	2e-11
2awx_A	105	Synapse associated protein 97; membrane protein, s	3e-11
2awx_A	105	Synapse associated protein 97; membrane protein, s	6e-10
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	1e-13
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	1e-13
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	3e-12
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	3e-13
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	3e-11
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	1e-10
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	6e-10
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	6e-13
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	2e-11
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-11
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	5e-10
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	6e-13
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	8e-11
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	6e-13
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	8e-05
2opg_A	98	Multiple PDZ domain protein; structural protein, s	7e-13
2opg_A	98	Multiple PDZ domain protein; structural protein, s	2e-11
2opg_A	98	Multiple PDZ domain protein; structural protein, s	5e-11
2opg_A	98	Multiple PDZ domain protein; structural protein, s	1e-08
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	7e-13
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	3e-05
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	1e-12
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	1e-11
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	2e-10
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	3e-10
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-12
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-12
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-11
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-10
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-12
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	5e-12
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	9e-11
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	1e-10
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	1e-12
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	1e-11
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-10
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	3e-10
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-12
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-11
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-11
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-10
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	2e-12
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	4e-11
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	4e-11
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	7e-09
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	2e-12
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	9e-12
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	2e-10
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	4e-09
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	3e-12
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	2e-11
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	5e-11
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	4e-10
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	4e-12
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	9e-11
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	1e-10
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	5e-08
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	5e-12
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	1e-10
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	2e-08
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-07
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	7e-12
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	1e-10
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	2e-10
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	5e-08
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	7e-12
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	2e-10
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	2e-09
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	4e-08
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	8e-12
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	2e-11
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	3e-11
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	2e-10
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	8e-12
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-11
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	3e-11
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	2e-10
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	9e-12
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-10
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	2e-10
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	5e-08
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	9e-12
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	2e-09
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	1e-07
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	3e-06
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	1e-11
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	1e-10
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	9e-10
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	3e-09
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	1e-11
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	3e-10
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	1e-09
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	5e-09
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	1e-11
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	9e-11
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-10
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	2e-09
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-11
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	3e-10
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	3e-10
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	3e-09
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	2e-11
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	1e-10
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	1e-10
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	2e-09
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	2e-11
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	9e-09
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	5e-07
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	9e-06
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	3e-11
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	8e-11
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	4e-09
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	7e-08
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	3e-11
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	1e-10
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	2e-09
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	4e-09
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	7e-11
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	1e-09
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	2e-08
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	3e-08
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	8e-11
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	2e-09
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	3e-08
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	7e-07
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	9e-11
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	1e-09
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	1e-08
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	2e-08
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	9e-11
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-08
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	8e-07
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-04
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	6e-04
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	1e-10
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-10
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-09
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-08
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	1e-10
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	1e-07
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	1e-06
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	2e-05
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	1e-10
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	1e-09
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	2e-09
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	2e-07
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	2e-10
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	4e-09
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	7e-05
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	6e-04
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-10
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-09
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	2e-09
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	4e-08
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	2e-10
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	3e-10
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	1e-09
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	2e-08
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-10
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	7e-08
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	3e-06
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	6e-05
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-10
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-09
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	3e-09
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	5e-08
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	4e-10
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	6e-08
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	2e-07
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	4e-06
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	4e-10
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-08
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	2e-07
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	4e-06
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	5e-10
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	2e-07
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	7e-06
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	1e-04
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	7e-10
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	9e-08
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	3e-07
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	5e-06
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	7e-10
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	2e-08
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	9e-08
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	4e-07
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	9e-10
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-08
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-07
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	2e-07
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-09
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	2e-07
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	3e-07
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	5e-06
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-09
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	6e-09
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	2e-08
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	3e-08
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-09
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	2e-08
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	3e-08
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	6e-07
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	3e-09
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	2e-08
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	3e-07
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	3e-07
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	7e-09
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	1e-07
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	7e-04
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	7e-09
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	1e-07
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	3e-04
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	8e-09
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	5e-08
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	1e-06
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-05
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	1e-08
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	3e-07
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	4e-05
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	1e-04
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	2e-08
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	4e-07
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	2e-05
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	5e-05
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	2e-08
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	6e-08
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	1e-07
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	1e-06
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	2e-08
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	3e-08
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	9e-08
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	6e-07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	5e-08
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-05
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-04
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	6e-08
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	9e-08
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	9e-07
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	3e-06
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	6e-08
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	2e-05
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	5e-05
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	9e-04
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	8e-08
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	2e-06
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	1e-05
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	2e-04
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	1e-07
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	2e-07
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	3e-07
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	3e-06
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	1e-07
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	3e-07
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	7e-07
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	1e-05
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	1e-07
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	3e-07
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	6e-07
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	9e-06
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	2e-07
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	3e-07
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	7e-06
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	4e-04
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	2e-07
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	1e-06
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	7e-06
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	1e-04
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	3e-07
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	7e-07
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	4e-06
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	1e-05
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	3e-07
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	4e-06
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	3e-07
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	5e-07
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	4e-07
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	6e-06
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	6e-06
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	4e-05
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	5e-07
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	5e-07
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	3e-06
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	8e-06
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	6e-07
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	2e-05
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	6e-05
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	7e-07
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	9e-07
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	1e-06
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	1e-05
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-06
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-06
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	2e-06
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	3e-05
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	1e-06
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	4e-06
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	3e-05
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	4e-05
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-06
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	2e-05
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	2e-06
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	2e-06
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	5e-06
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	7e-05
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-06
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-05
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	7e-05
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	3e-06
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	4e-05
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	6e-06
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	2e-05
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	2e-04
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	5e-04
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	8e-06
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	6e-05
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	1e-04
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	4e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	1e-05
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-05
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	1e-05
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	2e-05
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	2e-04
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	1e-05
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	1e-04
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	1e-04
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	2e-04
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	1e-05
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-04
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	5e-04
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	2e-05
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	2e-05
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	3e-04
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	3e-04
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	6e-04
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	4e-05
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	7e-04
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	4e-05
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	4e-04
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	5e-04
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	4e-05
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	6e-04
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	4e-05
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	5e-05
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	1e-04
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	2e-04
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	8e-04
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	6e-05
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	8e-05
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	8e-05
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	8e-05
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	1e-04
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	1e-04
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	1e-04
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	2e-04
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	1e-04
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	4e-04
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	9e-04
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	1e-04
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	4e-04
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-04
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	2e-04
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	7e-04
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	3e-04
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	6e-04
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	3e-04
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	4e-04
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	5e-04
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	5e-04
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	6e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	6e-04
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	6e-04
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	7e-04
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	7e-04

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C Length = 245

 Score =  140 bits (354), Expect = 3e-38
 Identities = 62/228 (27%), Positives = 108/228 (47%), Gaps = 28/228 (12%)

Query: 410 GPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEM--------EA 461
           GPKGV+ DW +FK  E +        +   +++++      ++  KE           E 
Sbjct: 21  GPKGVINDWRKFKL-ESEDSDSVAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYEL 79

Query: 462 ELKELEDDGFLLEYQKEKMKQMYDRL-----------------FLSEIDSEPRHITVIAH 504
             K+ ED+  L +Y+++ M+ M+ +L                 FL  I+ E +  T++ H
Sbjct: 80  IHKDKEDENCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVH 139

Query: 505 LSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV 564
           +    +  C ALNSSL  L+  +  VKF  +            F +  LP +L Y+GGE+
Sbjct: 140 IYEDGIKGCDALNSSLICLAAEYPMVKFCKIK--ASNTGAGDRFSSDVLPTLLVYKGGEL 197

Query: 565 VGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPGILRPTVDDDSD 612
           + NF+ + E+L E +F  DVE+FL E GLL    +  + +  +++D +
Sbjct: 198 LSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKEMHVLEQTNMEEDME 245

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6 Length = 217

 Score =  135 bits (340), Expect = 2e-36
 Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 28/213 (13%)

Query: 407 VRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEM------- 459
              GPKGV+ DW +FK  E +        +   +++++      ++  KE          
Sbjct: 5   THTGPKGVINDWRKFKL-ESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQE 63

Query: 460 -EAELKELEDDGFLLEYQKEKMKQMYDRL-----------------FLSEIDSEPRHITV 501
            E   ++ ED+G L +Y+++ M+ M+ +L                 FL  I+ E +  T+
Sbjct: 64  YELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTI 123

Query: 502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG 561
           + ++    +  C ALNSSL  L+  +  VKF  +     G      F +  LP +L Y+G
Sbjct: 124 VVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG--AGDRFSSDVLPTLLVYKG 181

Query: 562 GEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
           GE++ NF+ + E+  E +F  DVE+FL E GLL
Sbjct: 182 GELISNFISVAEQFAEDFFAADVESFLNEYGLL 214

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score =  104 bits (261), Expect = 3e-26
 Identities = 68/87 (78%), Positives = 76/87 (87%)

Query: 277 VYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGA 336
           V+ST+S  +YDRRNEDVDP+AASAEYELEKRVE+L L  VEL K +EGLG+SIIGMG GA
Sbjct: 45  VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGA 104

Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQ 363
           D GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 105 DMGLEKLGIFVKTVTEGGAAHRDGRIQ 131

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 66.9 bits (163), Expect = 4e-13
 Identities = 31/41 (75%), Positives = 36/41 (87%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
           +QVND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE
Sbjct: 130 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 63.0 bits (153), Expect = 8e-12
 Identities = 30/39 (76%), Positives = 34/39 (87%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
           VND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE
Sbjct: 132 VNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE 170

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT 547
           +++E+ +    + VI HL   S+P C  +N  L+ L+R     KFV      + +     
Sbjct: 13  YVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKA----IVNSCIQH 68

Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLR 595
           +  + LP +  Y+ G++   F+ + E  G    +E++E  L E G ++
Sbjct: 69  YHDNCLPTIFVYKNGQIEAKFIGIIECGGINLKLEELEWKLAEVGAIQ 116

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 90.7 bits (225), Expect = 7e-22
 Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)

Query: 488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSAT 547
           +++E+ +  + + V+ HL   S+P C  +N  L+ L+R     KFV      + +     
Sbjct: 20  YVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKA----IVNSCIEH 75

Query: 548 FKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLR 595
           +  + LP +  Y+ G++ G F+ + E  G    +E++E  L E G ++
Sbjct: 76  YHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGAIQ 123

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 40/58 (68%), Positives = 49/58 (84%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 112
           +QVND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE+    SEVAQLI+Q+L+
Sbjct: 54  IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLE 111

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 78.6 bits (194), Expect = 8e-18
 Identities = 39/56 (69%), Positives = 47/56 (83%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 56
           VND ++EVDG SLVGVTQ +AASVLRNT G VRF+IGRE+    SEVAQLI+Q+L+
Sbjct: 56  VNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERPGEQSEVAQLIQQTLE 111

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 72.8 bits (179), Expect = 8e-16
 Identities = 39/48 (81%), Positives = 42/48 (87%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL K +EGLG+SIIGMG GAD GLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 8   VELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQ 55

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 36/44 (81%), Positives = 39/44 (88%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
            +EGLG+SIIGMG GAD GLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 13  DSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQV 56

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 83.6 bits (207), Expect = 1e-18
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 39/137 (28%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQS------ 54
           VND I+ V+   +  VT   A   L+    +VR  + R K P    +   + +       
Sbjct: 56  VNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGF 115

Query: 55  ---------------------------------LQVNDQIIEVDGKSLVGVTQEYAASVL 81
                                            LQ+ D+I+ V+   L  V  E A + L
Sbjct: 116 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAAL 175

Query: 82  RNTSGLVRFLIGREKDP 98
           +NT  +V   + +  + 
Sbjct: 176 KNTYDVVYLKVAKPSNA 192

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 40/145 (27%), Positives = 52/145 (35%), Gaps = 55/145 (37%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ------------ 363
           + L +G  GLG SI G G       +   IF+  I   GAAA+DGR++            
Sbjct: 9   ITLERGNSGLGFSIAG-GTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 67

Query: 364 -----------------------------------------GAEGLGLSIIGMGVGADAG 382
                                                    G +GLG SI G GVG    
Sbjct: 68  VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHI 126

Query: 383 LEKLGIFVKTITEAGAAARDGRIQV 407
                I+V  I E GAA +DGR+Q+
Sbjct: 127 PGDNSIYVTKIIEGGAAHKDGRLQI 151

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          L+VND I+ V+   +  VT   A   L+    +VR  + R K P
Sbjct: 54 LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP 97

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL K  +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 13  VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 60

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 37/44 (84%), Positives = 40/44 (90%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQV
Sbjct: 18  DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQV 61

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 34/47 (72%), Positives = 39/47 (82%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           +QVNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGREK    S
Sbjct: 59  IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPS 105

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 33/45 (73%), Positives = 37/45 (82%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
           VNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGREK    S
Sbjct: 61  VNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPSGPS 105

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 72.1 bits (177), Expect = 9e-15
 Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 43/140 (30%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQ------- 53
           + D+++ ++G      T E A  +LR++S   +  +  E D   S +             
Sbjct: 57  IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKK 116

Query: 54  ------------------------------------SLQVNDQIIEVDGKSLVGVTQEYA 77
                                               +L++ D+++ +D   L   + E A
Sbjct: 117 HSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDA 176

Query: 78  ASVLRNTSGLVRFLIGREKD 97
             +L+    LV+  I +++D
Sbjct: 177 VQILQQCEDLVKLKIRKDED 196

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQ 109
           LQ+ D+++ ++G      T E A  +LR++S   +  +  E D   S +      
Sbjct: 55  LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTF 109

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 11/50 (22%), Positives = 15/50 (30%), Gaps = 5/50 (10%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKL-GIFVKTITEAGAAARDGRIQ 363
           V L      G G+ + G      A         +  I     A R G +Q
Sbjct: 10  VVLTADPVTGFGIQLQG---SVFATETLSSPPLISYIEADSPAERCGVLQ 56

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKL-GIFVKTITEAGAAARDGRIQV 407
               G G+ + G      A         +  I     A R G +Q+
Sbjct: 15  DPVTGFGIQLQG---SVFATETLSSPPLISYIEADSPAERCGVLQI 57

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           + +  LG++I         G     + +  I +   A R G +++
Sbjct: 116 KHSVELGITISS-PSSRKPGD---PLVISDIKKGSVAHRTGTLEL 156

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
               K +  LG++I         G     + +  I +   A R G ++
Sbjct: 112 KLPKKHSVELGITISS-PSSRKPGD---PLVISDIKKGSVAHRTGTLE 155

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 309 EKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + +T++ ++L KG +GLG SI G GVG         I+V  I + GAA +DGR+Q
Sbjct: 21  QSMTVVEIKLFKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQ 74

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 60.8 bits (148), Expect = 1e-11
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
           LQV D+++ V+  SL  VT E A ++L+NTS +V   +G+  
Sbjct: 73  LQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G +GLG SI G GVG         I+V  I + GAA +DGR+QV
Sbjct: 33  GPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQV 75

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
           V D+++ V+  SL  VT E A ++L+NTS +V   +G+  
Sbjct: 75  VGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT 114

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL K    LG+S+ G   G +  +   GI+VK +   GAA  DGRI 
Sbjct: 9   VELAKNDNSLGISVTG---GVNTSVRHGGIYVKAVIPQGAAESDGRIH 53

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 65.3 bits (160), Expect = 2e-13
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          +   D+++ V+G SL G T + A   LRNT  +V  L+ + + P
Sbjct: 52 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 95

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 61.4 bits (150), Expect = 5e-12
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D+++ V+G SL G T + A   LRNT  +V  L+ + + P
Sbjct: 54 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSP 95

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
               LG+S+ G   G +  +   GI+VK +   GAA  DGRI  
Sbjct: 14  NDNSLGISVTG---GVNTSVRHGGIYVKAVIPQGAAESDGRIHK 54

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +T++ V L+KG +GLG SI G G+G         I++  I E GAA +DGR+Q
Sbjct: 2   MTIMEVNLLKGPKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQ 53

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G +GLG SI G G+G         I++  I E GAA +DGR+Q+
Sbjct: 12  GPKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQI 54

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          LQ+ D+++ V+  +L  V  E A + L+NTS +V   + +
Sbjct: 52 LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 53.1 bits (128), Expect = 4e-09
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
          + D+++ V+  +L  V  E A + L+NTS +V   + +
Sbjct: 54 IGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 91

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)

Query: 285 EYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLG 344
            +   +   + +     Y  +K  ++L    ++L KG EGLG SI               
Sbjct: 6   HHHHHHHGSENLYFQGSYNTKKIGKRLN---IQLKKGTEGLGFSITS---RDVTIGGSAP 59

Query: 345 IFVKTITEAGAAARDGRIQ 363
           I+VK I   GAA +DGR++
Sbjct: 60  IYVKNILPRGAAIQDGRLK 78

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 58.6 bits (142), Expect = 8e-11
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G EGLG SI               I+VK I   GAA +DGR++ 
Sbjct: 39  GTEGLGFSITS---RDVTIGGSAPIYVKNILPRGAAIQDGRLKA 79

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD 97
           L+  D++IEV+G  LVG +QE   S+LR+T   G V  L+ R++D
Sbjct: 77  LKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD 41
             D++IEV+G  LVG +QE   S+LR+T   G V  L+ R++D
Sbjct: 79  AGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQED 121

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 302 YELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR 361
           Y  +K  ++L    ++L KG EGLG SI               I+VK I   GAA +DGR
Sbjct: 4   YNTKKVGKRLN---IQLKKGTEGLGFSITS---RDVTIGGSAPIYVKNILPRGAAIQDGR 57

Query: 362 IQ 363
           ++
Sbjct: 58  LK 59

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDPVNSE 102
           L+  D++IEV+G  L G +QE   S+LR+T   G V  L+ R+++  +  
Sbjct: 58  LKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPR 107

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G EGLG SI               I+VK I   GAA +DGR++ 
Sbjct: 20  GTEGLGFSITS---RDVTIGGSAPIYVKNILPRGAAIQDGRLKA 60

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDPVNSE 46
             D++IEV+G  L G +QE   S+LR+T   G V  L+ R+++  +  
Sbjct: 60  AGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFHPR 107

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 26/147 (17%), Positives = 50/147 (34%), Gaps = 46/147 (31%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQS------ 54
           V D I  V+G +L     +   S+L+N    V   +  E  PV+ + + ++ ++      
Sbjct: 54  VGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLH 113

Query: 55  ----------------------------------------LQVNDQIIEVDGKSLVGVTQ 74
                                                   ++  D+++ VDG  L+G T 
Sbjct: 114 KEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTH 173

Query: 75  EYAASVLRNTSGLVRFLIGREKDPVNS 101
             A S+L+        LI  +   ++S
Sbjct: 174 AEAMSILKQCGQEATLLIEYDVSVMDS 200

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K     G  I G             + +  +   G A R+G I+
Sbjct: 110 VTLHKEGNTFGFVIRGGAHDDRNK--SRPVVITCVRPGGPADREGTIK 155

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN 100
           L V D I  V+G +L     +   S+L+N    V   +  E  PV+
Sbjct: 52  LDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVS 97

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 2/47 (4%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             +     G  I G             + +  +   G A R+G I+ 
Sbjct: 112 LHKEGNTFGFVIRGGAHDDRNK--SRPVVITCVRPGGPADREGTIKP 156

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VELMK     LGL++ G   G D   +     V  + + G AAR  ++ 
Sbjct: 11  VELMKKEGTTLGLTVSG---GID---KDGKPRVSNLRQGGIAARSDQLD 53

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +    LGL++ G   G D   +     V  + + G AAR  ++ V
Sbjct: 16  KEGTTLGLTVSG---GID---KDGKPRVSNLRQGGIAARSDQLDV 54

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 67.0 bits (164), Expect = 9e-14
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL +G  GLG+ +I    G    L   G++++T+     AA DGR+ 
Sbjct: 12  VELERGPSGLGMGLID---GMHTHLGAPGLYIQTLLPGSPAAADGRLS 56

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
           L + D+I+EV+G SL+G+    A  ++R+    +RFL+ +       ++
Sbjct: 55  LSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKI 103

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G  GLG+ +I    G    L   G++++T+     AA DGR+ +
Sbjct: 17  GPSGLGMGLID---GMHTHLGAPGLYIQTLLPGSPAAADGRLSL 57

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 13/47 (27%), Positives = 27/47 (57%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
           + D+I+EV+G SL+G+    A  ++R+    +RFL+ +       ++
Sbjct: 57  LGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKI 103

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 67.0 bits (164), Expect = 1e-13
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L +G +GLG SI+G   G  +    L I+VKT+   GAA+ DGR++
Sbjct: 29  ITLERGPDGLGFSIVG---GYGSPHGDLPIYVKTVFAKGAASEDGRLK 73

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           L+  DQII V+G+SL GVT E A ++L+ T G V  ++    + 
Sbjct: 72  LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET 115

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G +GLG SI+G   G  +    L I+VKT+   GAA+ DGR++ 
Sbjct: 34  GPDGLGFSIVG---GYGSPHGDLPIYVKTVFAKGAASEDGRLKR 74

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
             DQII V+G+SL GVT E A ++L+ T G V  ++    + 
Sbjct: 74  RGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSDET 115

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           ++L+KG +GLG SI G GVG         I+V  I E GAA +DG++Q
Sbjct: 7   IKLIKGPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQ 53

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
           LQ+ D+++ V+  SL  VT E A + L+NTS  V   + +      S 
Sbjct: 52  LQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISR 99

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G +GLG SI G GVG         I+V  I E GAA +DG++Q+
Sbjct: 12  GPKGLGFSIAG-GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQI 54

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
          + D+++ V+  SL  VT E A + L+NTS  V   + +      S 
Sbjct: 54 IGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTSMYISR 99

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
           +   D+++ V+G SL G T + A   LRNT  +V  L+ + + P + E
Sbjct: 61  IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKE 108

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 316 VELMKGAEGLGLSIIGMGV--GADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL K    LG+S+  +    G +  +   GI+VK +   GAA  DGRI 
Sbjct: 13  VELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIH 62

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
             D+++ V+G SL G T + A   LRNT  +V  L+ + + P + E
Sbjct: 63  KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQSPTSKE 108

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 58.5 bits (142), Expect = 6e-11
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 364 GAEGLGLSIIGMGV--GADAGLEKLGIFVKTITEAGAAARDGRIQV 407
               LG+S+  +    G +  +   GI+VK +   GAA  DGRI  
Sbjct: 18  NDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHK 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 72.6 bits (177), Expect = 2e-13
 Identities = 77/653 (11%), Positives = 161/653 (24%), Gaps = 242/653 (37%)

Query: 32  VRFLIGREKDPVNSEVAQLIRQSLQVN-----DQI-IEVDGKSLVGVTQEYAASVLRNTS 85
              L           V + + + L++N       I  E    S++          L N +
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 86  GLVRFLIGREKDPVNSE--VAQLIR--QSLQPCLTLLNFGDPLETGIISSVGSMDELDRV 141
            +        K  V+      +L +    L+P   +L  G     G   +      +   
Sbjct: 124 QVFA------KYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTW-----V--A 167

Query: 142 SSSRDSVTLQNETEEEDENTFTEFVPEPRVEIFEEGGIHYYEDGNFWMEV--EGLPDRDL 199
                     +                 +V+   +  I       FW+ +     P+  L
Sbjct: 168 LD-----VCLSY----------------KVQCKMDFKI-------FWLNLKNCNSPETVL 199

Query: 200 E---------------LADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSN 244
           E                +D+S    + + S  + +         Y   L  VL + V + 
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-IQAELRRLLKSKPYENCLL-VLLN-VQNA 256

Query: 245 ATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYEL 304
              ++++     L  +  R    T+ L  +   +                          
Sbjct: 257 KAWNAFNLSCKILLTT--RFKQVTDFLSAATTTH-------------------------- 288

Query: 305 EKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQG 364
                      + L   +  L               E   + +K +       +D   + 
Sbjct: 289 -----------ISLDHHSMTLTPD------------EVKSLLLKYL---DCRPQDLPREV 322

Query: 365 AEG--LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGPKGVLKDWEQFK 422
                  LSII                         + RDG              W+ +K
Sbjct: 323 LTTNPRRLSIIA-----------------------ESIRDGLAT-----------WDNWK 348

Query: 423 QYECQMRRDKELQRLAQIQKLALTCQSSEEARK--------------------------- 455
              C    DK    L  I + +L      E RK                           
Sbjct: 349 HVNC----DK----LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 456 EAEMEAELKELEDDGFLLEYQKEKMKQMYDRLF--LSEIDSEPR-HITVIAHLSSPS--- 509
           ++++   + +L     + +  KE    +         ++++E   H +++ H + P    
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 510 --------------------LPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFK 549
                               L         +        + +F+   +       +A   
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMVFLDFRFLEQKIRHDS---TAWNA 516

Query: 550 TSGLPAMLA----YRGGEVVGNFVRLGEELGEGYFVEDVEAFL--VEAGLLRA 596
           +  +   L     Y+       ++   +   E   V  +  FL  +E  L+ +
Sbjct: 517 SGSILNTLQQLKFYK------PYICDNDPKYERL-VNAILDFLPKIEENLICS 562

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 299 SAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR 358
           S +Y + +         + L +G  GLG +I+G G          GI+V  I E GAAA 
Sbjct: 1   SMDYLVTEEE-------INLTRGPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAAL 52

Query: 359 DGRIQ 363
           DGR+Q
Sbjct: 53  DGRLQ 57

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          LQ  D+I+ V+G+ L  +  + A  + RN    V   +    + 
Sbjct: 56 LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLES 99

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G  GLG +I+G G          GI+V  I E GAAA DGR+Q 
Sbjct: 16  GPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 58

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D+I+ V+G+ L  +  + A  + RN    V   +    + 
Sbjct: 58 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLES 99

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 19/48 (39%), Positives = 21/48 (43%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
             L +   GLG SI G            GIFV  I E GAA R G +Q
Sbjct: 11  ACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQ 58

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           LQV D+++ ++G  +     ++A S+L   S  +  L+ RE     S
Sbjct: 57  LQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPS 103

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 19/45 (42%), Positives = 21/45 (46%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +   GLG SI G            GIFV  I E GAA R G +QV
Sbjct: 15  RSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQV 59

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
           V D+++ ++G  +     ++A S+L   S  +  L+ RE     S
Sbjct: 59  VGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPS 103

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 67.2 bits (164), Expect = 6e-13
 Identities = 24/140 (17%), Positives = 46/140 (32%), Gaps = 35/140 (25%)

Query: 1   VNDQIIEVDGKSL--VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE------------ 46
           + D I +++G  +    +T      +   T      L     DP   E            
Sbjct: 66  IFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGK 125

Query: 47  --------------VAQLIRQS-------LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS 85
                         +A LI+         LQ  D I + +G +L G+  +   ++ +  +
Sbjct: 126 ELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN 185

Query: 86  GLVRFLIGREKDPVNSEVAQ 105
           G V   + R K  + +E  +
Sbjct: 186 GKVSMEVTRPKPTLRTEAPK 205

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 61.1 bits (148), Expect = 8e-11
 Identities = 15/140 (10%), Positives = 35/140 (25%), Gaps = 52/140 (37%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL----GLS 371
           +EL    + +G+ + G   G +  +   G  +  +   G  A D R++  + +    G  
Sbjct: 22  IELKVEKKPMGVIVCG---GKNNHVTT-GCVITHVYPEGQVAADKRLKIFDHICDINGTP 77

Query: 372 IIGMGVGADAGLEKL--------------------------------------------G 387
           I    +      +                                              G
Sbjct: 78  IHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIG 137

Query: 388 IFVKTITEAGAAARDGRIQV 407
             +  + +      D ++Q 
Sbjct: 138 CTIADLIQGQYPEIDSKLQR 157

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 66.0 bits (161), Expect = 6e-13
 Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 24/116 (20%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLI--------- 51
             DQ+++++G++  G + + A  VL+   G    +  R++    +               
Sbjct: 47  FGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIF 106

Query: 52  ---------------RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
                          R  L     I E++G++++G+     A +L  +  +V   I
Sbjct: 107 KNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 162

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 10/44 (22%), Positives = 23/44 (52%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
             L+  DQ+++++G++  G + + A  VL+   G    +  R+
Sbjct: 42 LVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD 85

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 63.9 bits (156), Expect = 7e-13
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
           L   DQI+EV+G  L   T + A +VLR T   VR  + R++ P  S 
Sbjct: 49  LWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKST 96

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 18/46 (39%), Positives = 25/46 (54%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
            DQI+EV+G  L   T + A +VLR T   VR  + R++ P  S 
Sbjct: 51 AGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEAPYKST 96

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 5/48 (10%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +E+ KG  GLGLSI+G   G+D  L    I +  + E GAA +DGR+ 
Sbjct: 8   IEISKGRTGLGLSIVG---GSDTLLG--AIIIHEVYEEGAACKDGRLW 50

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G  GLGLSI+G   G+D  L    I +  + E GAA +DGR+  
Sbjct: 13  GRTGLGLSIVG---GSDTLLG--AIIIHEVYEEGAACKDGRLWA 51

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 69.6 bits (169), Expect = 7e-13
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 26/118 (22%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLI--------- 51
           + DQI+ ++G SLVG+       +++      +  +     P  + V             
Sbjct: 253 IGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGF 312

Query: 52  -----------------RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
                            R  ++V  +IIE++G+S+V    E     L N+ G +    
Sbjct: 313 SVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKT 370

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 53  QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 112
             L + DQI+ ++G SLVG+       +++      +  +     P  + V         
Sbjct: 249 GKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKY 308

Query: 113 PCLTLLNFGDPLETGIISSV 132
                   G  ++ GII S+
Sbjct: 309 Q------LGFSVQNGIICSL 322

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L +G  GLG SI G G+      +  GIF+  I   GAAA DGR+ 
Sbjct: 8   IVLERGNSGLGFSIAG-GIDNPHVPDDPGIFITKIIPGGAAAMDGRLG 54

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           L VND ++ V+   +  V    A   L+    +VR ++ R + P   
Sbjct: 53  LGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPEE 99

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G  GLG SI G G+      +  GIF+  I   GAAA DGR+ V
Sbjct: 13  GNSGLGFSIAG-GIDNPHVPDDPGIFITKIIPGGAAAMDGRLGV 55

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
          VND ++ V+   +  V    A   L+    +VR ++ R + P   
Sbjct: 55 VNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQPPPEE 99

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 2/48 (4%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL K  +GLG++I G  +G D  LE  GIFVK+IT++ A   DGRIQ
Sbjct: 8   VELTKNVQGLGITIAG-YIG-DKKLEPSGIFVKSITKSSAVEHDGRIQ 53

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          +Q+ DQII VDG +L G T + A  VLR+T   V   + R  + 
Sbjct: 52 IQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 95

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
          + DQII VDG +L G T + A  VLR+T   V   + R  + 
Sbjct: 54 IGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRGET 95

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 2/44 (4%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             +GLG++I G  +G D  LE  GIFVK+IT++ A   DGRIQ+
Sbjct: 13  NVQGLGITIAG-YIG-DKKLEPSGIFVKSITKSSAVEHDGRIQI 54

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 295 PVAASAEYELEKRVEKLTLLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEA 353
           P     +  ++   +   +   EL+K  + GLG S++G          +LGIFV+ I E 
Sbjct: 3   PACDEFDQLIKNMAQGRHVEVFELLKPPSGGLGFSVVG---LRSENRGELGIFVQEIQEG 59

Query: 354 GAAARDGRIQ 363
             A RDGR++
Sbjct: 60  SVAHRDGRLK 69

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 55  LQVNDQIIEVDGKSL-VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
           L+  DQI+ ++G++L   +T + A S+L+     V+ +I R   P   +V
Sbjct: 68  LKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQYYKV 117

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 58.5 bits (142), Expect = 9e-11
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
            + GLG S++G          +LGIFV+ I E   A RDGR++ 
Sbjct: 30  PSGGLGFSVVG---LRSENRGELGIFVQEIQEGSVAHRDGRLKE 70

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 1   VNDQIIEVDGKSL-VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
             DQI+ ++G++L   +T + A S+L+     V+ +I R   P   +V
Sbjct: 70  ETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQYYKV 117

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L +G  GLG +I+G G          GI+V  I E GAAA DGR+Q
Sbjct: 21  INLTRGPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQ 67

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 105
           LQ  D+I+ V+G+ L  +  + A  + RN    V   +       N  ++ 
Sbjct: 66  LQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISG 116

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 49
             D+I+ V+G+ L  +  + A  + RN    V   +       N  ++ 
Sbjct: 68  EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPISG 116

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G  GLG +I+G G          GI+V  I E GAAA DGR+Q 
Sbjct: 26  GPSGLGFNIVG-GTDQQYVSNDSGIYVSRIKENGAAALDGRLQE 68

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
           L+V D+I+ + G S  G+T   A ++L+N SG +   +    D   + V
Sbjct: 72  LRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETSV 120

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VE+ KG  + LG+SI G   G  + L  + IF+  +   G AA+  +++
Sbjct: 28  VEMKKGPTDSLGISIAG---GVGSPLGDVPIFIAMMHPTGVAAQTQKLR 73

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
           V D+I+ + G S  G+T   A ++L+N SG +   +    D   + V
Sbjct: 74  VGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGDVSETSV 120

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 365 AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
            + LG+SI G   G  + L  + IF+  +   G AA+  +++V
Sbjct: 35  TDSLGISIAG---GVGSPLGDVPIFIAMMHPTGVAAQTQKLRV 74

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
           L   DQI+EV+G  L   + E A + LR T   VR ++ R++     E
Sbjct: 62  LWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDE 109

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 5/48 (10%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +E+ KG  GLGLSI+G   G D  L    I +  + E GAAARDGR+ 
Sbjct: 21  IEISKGRSGLGLSIVG---GKDTPLN--AIVIHEVYEEGAAARDGRLW 63

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 16/46 (34%), Positives = 24/46 (52%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
             DQI+EV+G  L   + E A + LR T   VR ++ R++     E
Sbjct: 64  AGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEAHYRDE 109

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 53.2 bits (128), Expect = 7e-09
 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G  GLGLSI+G   G D  L    I +  + E GAAARDGR+  
Sbjct: 26  GRSGLGLSIVG---GKDTPLN--AIVIHEVYEEGAAARDGRLWA 64

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 298 ASAEYELEKRVEKLT--LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGA 355
           A  + ++ +R   L   L  +EL K   GLGLS+ G     D    ++ IFV  I   G 
Sbjct: 9   AFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAG---NKDRS--RMSIFVVGINPEGP 63

Query: 356 AARDGRIQ 363
           AA DGR++
Sbjct: 64  AAADGRMR 71

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 61.3 bits (149), Expect = 9e-12
 Identities = 10/47 (21%), Positives = 29/47 (61%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           +++ D+++E++ + L G + + A+++++     V+ +  R +D VN 
Sbjct: 70  MRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQ 116

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 10/45 (22%), Positives = 27/45 (60%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
           + D+++E++ + L G + + A+++++     V+ +  R +D VN 
Sbjct: 72  IGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNEDAVNQ 116

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              GLGLS+ G     D    ++ IFV  I   G AA DGR+++
Sbjct: 34  DKNGLGLSLAG---NKDRS--RMSIFVVGINPEGPAAADGRMRI 72

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +   K    LG+SI G         E  GI+VK++    AAA DGRI+
Sbjct: 18  LFREKDTSSLGISISG-MRDQSTTGEATGIYVKSLIPGSAAALDGRIE 64

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
           ++ ND+I+ VD  ++ G+ Q     VLRN    VR L+ R  
Sbjct: 63  IEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 58.9 bits (143), Expect = 5e-11
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
               LG+SI G         E  GI+VK++    AAA DGRI+ 
Sbjct: 23  DTSSLGISISG-MRDQSTTGEATGIYVKSLIPGSAAALDGRIEP 65

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 56.6 bits (137), Expect = 4e-10
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
            ND+I+ VD  ++ G+ Q     VLRN    VR L+ R  
Sbjct: 65  PNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRL 104

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           ++V D+++EV+G +L G     A   LR     V+  + RE  P
Sbjct: 64  VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGP 107

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 58.5 bits (142), Expect = 9e-11
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
           V D+++EV+G +L G     A   LR     V+  + RE  P
Sbjct: 66  VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRESGP 107

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           + +++   GLG+SI G         +  GIF+  ++E G AAR G
Sbjct: 19  LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 63

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              GLG+SI G         +  GIF+  ++E G AAR G ++V
Sbjct: 24  QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRV 66

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 61.6 bits (150), Expect = 5e-12
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK---DPVNSEVAQLIRQS 110
           LQ  D I + +G +L G+  +   ++ +  +G V   + R K       S V +L+R++
Sbjct: 44  LQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSGGSGSLVPRLLRRN 102

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK---DPVNSEVAQLIRQS 54
             D I + +G +L G+  +   ++ +  +G V   + R K       S V +L+R++
Sbjct: 46  RGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKPGSGGSGSLVPRLLRRN 102

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%)

Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V+LMK A + LGLS+            ++G  +  + +      D ++Q
Sbjct: 6   VDLMKKAGKELGLSLSPN---------EIGCTIADLIQGQYPEIDSKLQ 45

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 9/45 (20%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +  + LGLS+            ++G  +  + +      D ++Q 
Sbjct: 11  KAGKELGLSLSPN---------EIGCTIADLIQGQYPEIDSKLQR 46

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          ++V D+++EV+G +L G     A   LR     V+  + RE++ 
Sbjct: 52 VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           + +++   GLG+SI G         +  GIF+  ++E G AAR G
Sbjct: 7   LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG 51

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
          V D+++EV+G +L G     A   LR     V+  + RE++ 
Sbjct: 54 VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRERET 95

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              GLG+SI G         +  GIF+  ++E G AAR G ++V
Sbjct: 12  QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRV 54

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          L  ND+++ ++G  L   T E AA +++ +   V   I R   P
Sbjct: 48 LSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKP 91

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
           ND+++ ++G  L   T E AA +++ +   V   I R   P
Sbjct: 50 SNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKP 91

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K   G  L I  +        ++ G+F+  + E G AA+DGR+ 
Sbjct: 7   VALHKRDSGEQLGIKLVR-----RTDEPGVFILDLLEGGLAAQDGRLS 49

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 7/47 (14%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +    E LG+ ++          ++ G+F+  + E G AA+DGR+  
Sbjct: 11  KRDSGEQLGIKLVR-------RTDEPGVFILDLLEGGLAAQDGRLSS 50

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 61.2 bits (149), Expect = 8e-12
 Identities = 17/44 (38%), Positives = 28/44 (63%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           L   DQ++ VDG+SLVG++QE AA ++  TS +V   + ++   
Sbjct: 57  LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 318 LMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
            +K   G+GLSI+       AG +KLGI+VK++ + GAA  DGR+ 
Sbjct: 16  TLKKQNGMGLSIVA---AKGAGQDKLGIYVKSVVKGGAADVDGRLA 58

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 3/46 (6%)

Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           ++   G+GLSI+       AG +KLGI+VK++ + GAA  DGR+  
Sbjct: 17  LKKQNGMGLSIVA---AKGAGQDKLGIYVKSVVKGGAADVDGRLAA 59

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
             DQ++ VDG+SLVG++QE AA ++  TS +V   + ++   
Sbjct: 59  AGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGAI 100

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 61.7 bits (150), Expect = 8e-12
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
           +QVND+I+ VDG ++ G        VLRN   +V   + R K   ++ 
Sbjct: 65  IQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTS 112

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL++   + LG+ I+G  VG     E  GI+VK++    AA  +G IQ
Sbjct: 19  VELVRKDGQSLGIRIVG-YVGTSHTGEASGIYVKSVIPGSAAYHNGHIQ 66

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +  + LG+ I+G  VG     E  GI+VK++    AA  +G IQV
Sbjct: 24  KDGQSLGIRIVG-YVGTSHTGEASGIYVKSVIPGSAAYHNGHIQV 67

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
           VND+I+ VDG ++ G        VLRN   +V   + R K   ++ 
Sbjct: 67  VNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKTSSSTS 112

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 61.2 bits (149), Expect = 9e-12
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 105
           LQ  D I+++ G ++ G+T E  A VLRN    VR L+ R+     S  + 
Sbjct: 57  LQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL+    GLG  I+G            G+ V+TI   G A RDGR+Q
Sbjct: 19  VELINDGSGLGFGIVGGKTS--------GVVVRTIVPGGLADRDGRLQ 58

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 49
             D I+++ G ++ G+T E  A VLRN    VR L+ R+     S  + 
Sbjct: 59  TGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSG 107

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 50.4 bits (121), Expect = 5e-08
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 8/44 (18%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              GLG  I+G            G+ V+TI   G A RDGR+Q 
Sbjct: 24  DGSGLGFGIVGGKTS--------GVVVRTIVPGGLADRDGRLQT 59

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 61.7 bits (150), Expect = 9e-12
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K + GLG S+ G   G  +      + +  I +  A+ +   +Q
Sbjct: 33  VTLEKMSAGLGFSLEG---GKGSLHGDKPLTINRIFKGAASEQSETVQ 77

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
            + + GLG S+ G   G  +      + +  I +  A+ +   +Q 
Sbjct: 36  EKMSAGLGFSLEG---GKGSLHGDKPLTINRIFKGAASEQSETVQP 78

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREKDPVNSEVA 104
           +Q  D+I+++ G ++ G+T+  A ++++    G V  +I R+        A
Sbjct: 76  VQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTA 126

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREKDPVNSEVA 48
             D+I+++ G ++ G+T+  A ++++    G V  +I R+        A
Sbjct: 78  PGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSLQSKETTA 126

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 316 VELMKGAEGLGLSIIGMGVGADA--GLEKLGIFVKTITEAGAAARDGRIQ 363
           + L + +  LG +IIG     D   G    GIFV  I ++G AA++G +Q
Sbjct: 12  LVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           LQ++D+IIEV+G+ L   T + A    +     +   + R    
Sbjct: 60  LQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)

Query: 354 GAAARDGRI------QGAEGLGLSIIGMGVGADA--GLEKLGIFVKTITEAGAAARDGRI 405
           G++   G+       + +  LG +IIG     D   G    GIFV  I ++G AA++G +
Sbjct: 1   GSSGSSGKSLTLVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGL 60

Query: 406 QV 407
           Q+
Sbjct: 61  QI 62

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
           ++D+IIEV+G+ L   T + A    +     +   + R    
Sbjct: 62  IHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG 103

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
          L   DQI+ V+G+ +   TQE  A++L+ + G V   +GR    V
Sbjct: 48 LMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRISTYV 92

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 43
            DQI+ V+G+ +   TQE  A++L+ + G V   +GR    V
Sbjct: 50 QGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRISTYV 92

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 8/49 (16%)

Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L K   +GLGLSI+G            G+FV  I + G A  DGR+ 
Sbjct: 8   IGLQKKPGKGLGLSIVG-------KRNDTGVFVSDIVKGGIADADGRLM 49

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +  +GLGLSI+G            G+FV  I + G A  DGR+  
Sbjct: 13  KPGKGLGLSIVG-------KRNDTGVFVSDIVKGGIADADGRLMQ 50

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 60.9 bits (148), Expect = 1e-11
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V + K   E LG+++ G   GA      L I+V ++   G  +RDGRI+
Sbjct: 28  VNIQKDPGESLGMTVAG---GASHREWDLPIYVISVEPGGVISRDGRIK 73

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 58.6 bits (142), Expect = 9e-11
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
           ++  D ++ VDG  L  V++  A ++L+ TS  +       K+
Sbjct: 72  IKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 365 AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
            E LG+++ G   GA      L I+V ++   G  +RDGRI+ 
Sbjct: 35  GESLGMTVAG---GASHREWDLPIYVISVEPGGVISRDGRIKT 74

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
             D ++ VDG  L  V++  A ++L+ TS  +       K+
Sbjct: 74  TGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE 114

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 13/47 (27%), Positives = 26/47 (55%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           L+V  +++EV+ +SL+G+T   A  +LR+    +  L+    +   S
Sbjct: 63  LRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGPS 109

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
           V  +++EV+ +SL+G+T   A  +LR+    +  L+    +   S
Sbjct: 65  VGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFESGPS 109

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 316 VELMKG-AEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + + K   E LG+SI G      G        GIF+  ++  GAA RDGR++
Sbjct: 13  LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLR 64

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 363 QGAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              E LG+SI G      G        GIF+  ++  GAA RDGR++V
Sbjct: 18  APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRV 65

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +++ + +  GLG S++         L K+ IFVK +     A RD R++
Sbjct: 29  IDIERPSTGGLGFSVVA---LRSQNLGKVDIFVKDVQPGSVADRDQRLK 74

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 55  LQVNDQIIEVDGKSL-VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 105
           L+ NDQI+ ++   L   ++ + A ++L+ T+G +R ++ RE     S  + 
Sbjct: 73  LKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSG 124

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              GLG S++         L K+ IFVK +     A RD R++ 
Sbjct: 35  STGGLGFSVVA---LRSQNLGKVDIFVKDVQPGSVADRDQRLKE 75

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 1   VNDQIIEVDGKSL-VGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 49
            NDQI+ ++   L   ++ + A ++L+ T+G +R ++ RE     S  + 
Sbjct: 75  ENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPVHTKSSTSG 124

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL+K  +GLG SI+      D       I ++++   G A R G + 
Sbjct: 19  VELVKDCKGLGFSILDYQDPLDPTRS--VIVIRSLVADGVAERSGGLL 64

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             +GLG SI+      D       I ++++   G A R G +  
Sbjct: 24  DCKGLGFSILDYQDPLDPTRS--VIVIRSLVADGVAERSGGLLP 65

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGR 94
           L   D+++ V+   L   +   A  +L+    GLV   I  
Sbjct: 63  LLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGR 38
             D+++ V+   L   +   A  +L+    GLV   I  
Sbjct: 65  PGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICS 103

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K G +  G+ I+   V      +  GIF+K I     A   GR++
Sbjct: 9   VTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLK 57

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
            G +  G+ I+   V      +  GIF+K I     A   GR++V
Sbjct: 14  TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKV 58

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          L+V D+I+ ++GK +   T++    +++     +   I  
Sbjct: 56 LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 49.6 bits (119), Expect = 7e-08
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
          V D+I+ ++GK +   T++    +++     +   I  
Sbjct: 58 VGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 95

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 59.2 bits (144), Expect = 3e-11
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K     G  I G G   D   +   + + ++   G A R+G I+
Sbjct: 7   VTLHKEGNTFGFVIRG-GAHDDRN-KSRPVVITSVRPGGPADREGTIK 52

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          ++  D+++ VDG  L+G T   A S+L+        LI  +   
Sbjct: 51 IKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSE 94

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D+++ VDG  L+G T   A S+L+        LI  +   
Sbjct: 53 PGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVSE 94

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
                G  I G G   D   +   + + ++   G A R+G I+ 
Sbjct: 12  EGNTFGFVIRG-GAHDDRN-KSRPVVITSVRPGGPADREGTIKP 53

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 58.5 bits (142), Expect = 7e-11
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL++G  G GL++ G   G D   +   + V+ + + G A R GR++
Sbjct: 15  VELVRGYAGFGLTLGG---GRDVAGD-TPLAVRGLLKDGPAQRCGRLE 58

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           L+V D ++ ++G+S  G+T   A   +R     +  +I R     +S
Sbjct: 57  LEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G  G GL++ G   G D   +   + V+ + + G A R GR++V
Sbjct: 20  GYAGFGLTLGG---GRDVAGD-TPLAVRGLLKDGPAQRCGRLEV 59

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 11/45 (24%), Positives = 21/45 (46%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
           V D ++ ++G+S  G+T   A   +R     +  +I R     +S
Sbjct: 59  VGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLSGPSS 103

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           LQ  D I + +G +L G+  + + ++ +  +G V   + R K    S
Sbjct: 50  LQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAAS 96

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
            D I + +G +L G+  + + ++ +  +G V   + R K    S
Sbjct: 52 RGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKPAAAS 96

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 10/49 (20%)

Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V+LMK A + LGLS+            ++G  +  + +      D ++Q
Sbjct: 12  VDLMKKAGKELGLSLSPN---------EIGCTIADLIQGQYPEIDSKLQ 51

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 9/45 (20%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +  + LGLS+            ++G  +  + +      D ++Q 
Sbjct: 17  KAGKELGLSLSPN---------EIGCTIADLIQGQYPEIDSKLQR 52

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 58.1 bits (141), Expect = 9e-11
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V++ KGA+G G SI G   G +    K+ ++V  + E G A R+GR++
Sbjct: 15  VDMEKGAKGFGFSIRG---GRE---YKMDLYVLRLAEDGPAIRNGRMR 56

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
          ++V DQIIE++G+S   +T   A  ++++    VR L+ R  
Sbjct: 55 MRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGT 96

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           GA+G G SI G   G +    K+ ++V  + E G A R+GR++V
Sbjct: 20  GAKGFGFSIRG---GRE---YKMDLYVLRLAEDGPAIRNGRMRV 57

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
          V DQIIE++G+S   +T   A  ++++    VR L+ R  
Sbjct: 57 VGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGT 96

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 63.8 bits (154), Expect = 9e-11
 Identities = 50/310 (16%), Positives = 96/310 (30%), Gaps = 65/310 (20%)

Query: 54  SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQP 113
            L+VND I+ V+   +  VT   A   L+    +VR  + R K P    +   + +    
Sbjct: 107 RLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKG--- 163

Query: 114 CLTLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTLQNETEEEDENTFTEFVPEPRVEI 173
                     L   I   VG+                     +      + +V     +I
Sbjct: 164 -------PKGLGFSIAGGVGN---------------------QHIPGDNSIYV----TKI 191

Query: 174 FEEGGIHYYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESL 233
            E G  H             + D+ L +     E  +   +   +K +   +    +   
Sbjct: 192 IEGGAAH-------KDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVA--- 241

Query: 234 KPVLGHMVGSNATLDSYSGHSTTLEDSYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDV 293
           KP   ++  S A  D  + +S  L++  +           +    S    +   +     
Sbjct: 242 KPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGE 301

Query: 294 DPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEA 353
           + +                   + + +G+ GLG +I+G       G +  GIF+  I   
Sbjct: 302 EDIPREPRR-------------IVIHRGSTGLGFNIVG-------GEDGEGIFISFILAG 341

Query: 354 GAAARDGRIQ 363
           G A   G ++
Sbjct: 342 GPADLSGELR 351

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 56.5 bits (135), Expect = 2e-08
 Identities = 28/141 (19%), Positives = 47/141 (33%), Gaps = 39/141 (27%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIR-------- 52
           VND I+ V+   +  VT   A   L+    +VR  + R K P    +   +         
Sbjct: 110 VNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGF 169

Query: 53  -------------------------------QSLQVNDQIIEVDGKSLVGVTQEYAASVL 81
                                            LQ+ D+I+ V+   L  V  E A + L
Sbjct: 170 SIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAAL 229

Query: 82  RNTSGLVRFLIGREKDPVNSE 102
           +NT  +V   + +  +   S+
Sbjct: 230 KNTYDVVYLKVAKPSNAYLSD 250

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 51.1 bits (121), Expect = 8e-07
 Identities = 40/147 (27%), Positives = 52/147 (35%), Gaps = 55/147 (37%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ------------ 363
           + L +G  GLG SI G G       +   IF+  I   GAAA+DGR++            
Sbjct: 63  ITLERGNSGLGFSIAG-GTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD 121

Query: 364 -----------------------------------------GAEGLGLSIIGMGVGADAG 382
                                                    G +GLG SI G GVG    
Sbjct: 122 VREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAG-GVGNQHI 180

Query: 383 LEKLGIFVKTITEAGAAARDGRIQVRR 409
                I+V  I E GAA +DGR+Q+  
Sbjct: 181 PGDNSIYVTKIIEGGAAHKDGRLQIGD 207

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPC 114
           L+  DQI+ V+G  L   + E AA  L+N    V  +   + +  +   A++     Q  
Sbjct: 350 LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLM 409

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 41.8 bits (97), Expect = 6e-04
 Identities = 12/46 (26%), Positives = 20/46 (43%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
             DQI+ V+G  L   + E AA  L+N    V  +   + +  +  
Sbjct: 352 KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRF 397

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL +GA+G G S+ G   G +  +    ++V  + E G A R G+++
Sbjct: 28  VELERGAKGFGFSLRG---GREYNM---DLYVLRLAEDGPAERSGKMR 69

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 57.8 bits (140), Expect = 2e-10
 Identities = 10/45 (22%), Positives = 25/45 (55%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
           +++ D+I+E++G++   +    A  +++N    VR  + R +  V
Sbjct: 68  MRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETSV 112

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 43
           + D+I+E++G++   +    A  +++N    VR  + R +  V
Sbjct: 70  IGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRGETSV 112

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           GA+G G S+ G   G +  +    ++V  + E G A R G++++
Sbjct: 33  GAKGFGFSLRG---GREYNM---DLYVLRLAEDGPAERSGKMRI 70

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 297 AASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAA 356
            +S  +  +    K T L   L K   G G +IIG   G +       + VK++   G A
Sbjct: 4   GSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIG---GDE---PDEFLQVKSVIPDGPA 57

Query: 357 ARDGRIQ 363
           A+DG+++
Sbjct: 58  AQDGKME 64

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              G G +IIG   G +       + VK++   G AA+DG+++ 
Sbjct: 28  SNMGFGFTIIG---GDE---PDEFLQVKSVIPDGPAAQDGKMET 65

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 6/46 (13%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 98
           ++  D I+ ++   ++G T      + ++      V  ++ R    
Sbjct: 63  METGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPL 108

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 42
             D I+ ++   ++G T      + ++      V  ++ R    
Sbjct: 65  TGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYPL 108

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           + + D+I+ ++  SL G     A  +L+     V   I ++ D   +
Sbjct: 49  IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPA 95

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL +    LG++I G     D       I + ++T+ G A R G I 
Sbjct: 9   VELKRYGGPLGITISGTEEPFD------PIIISSLTKGGLAERTGAIH 50

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 10/45 (22%), Positives = 20/45 (44%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
          + D+I+ ++  SL G     A  +L+     V   I ++ D   +
Sbjct: 51 IGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPA 95

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
               LG++I G     D       I + ++T+ G A R G I +
Sbjct: 14  YGGPLGITISGTEEPFD------PIIISSLTKGGLAERTGAIHI 51

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQL 106
           LQ ND++  V+G S+  V   +A   LR +    +  I R+K         L
Sbjct: 56  LQENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTTYL 107

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQL 50
            ND++  V+G S+  V   +A   LR +    +  I R+K         L
Sbjct: 58  ENDRVAMVNGVSMDNVEHAFAVQQLRKSGKNAKITIRRKKGGGWRRTTYL 107

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 316 VELMKGAE-GLGLSIIGMGVGADAGLE-KLGIFVKTITEAGAAARDGRIQ 363
           V L +    G G++I G G         +  I +  + + G A  +G++Q
Sbjct: 11  VTLHRAPGFGFGIAISG-GRDNPHFQSGETSIVISDVLKGGPA--EGQLQ 57

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 366 EGLGLSIIGMGVGADAGLE-KLGIFVKTITEAGAAARDGRIQV 407
            G G++I G G         +  I +  + + G A  +G++Q 
Sbjct: 19  FGFGIAISG-GRDNPHFQSGETSIVISDVLKGGPA--EGQLQE 58

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 316 VELMKG-AEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL +  ++ LG+SI+G   MG     G    GIF+K + E   A ++G ++
Sbjct: 8   VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 59

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
           L+  D+I+EVDG  L   + E A   +R     V F++     
Sbjct: 58  LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 363 QGAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           + ++ LG+SI+G   MG     G    GIF+K + E   A ++G ++ 
Sbjct: 13  EPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
             D+I+EVDG  L   + E A   +R     V F++     
Sbjct: 60  PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 2/45 (4%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
            G+ GLG+S+ G     + G + LGIF+K+I   GAA +DGR+++
Sbjct: 34  SGSAGLGVSLKG-NKSRETGTD-LGIFIKSIIHGGAAFKDGRLRM 76

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 318 LMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
              G+ GLG+S+ G     + G + LGIF+K+I   GAA +DGR++
Sbjct: 32  NDSGSAGLGVSLKG-NKSRETGTD-LGIFIKSIIHGGAAFKDGRLR 75

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS-------GLVRFLIGREKDPVN 100
           L++NDQ+I V+G++L+G +   A   LR +        G+++ +I R   P +
Sbjct: 74  LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSS 126

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTS-------GLVRFLIGREKDPVN 44
           +NDQ+I V+G++L+G +   A   LR +        G+++ +I R   P +
Sbjct: 76  MNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGPSS 126

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
            +L K + G G +++G   G +       + +K++   G AA DG+++
Sbjct: 4   TKLRKSSRGFGFTVVG---GDEPDE---FLQIKSLVLDGPAALDGKME 45

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 49.2 bits (118), Expect = 7e-08
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
            + G G +++G   G +       + +K++   G AA DG+++ 
Sbjct: 9   SSRGFGFTVVG---GDEPDE---FLQIKSLVLDGPAALDGKMET 46

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGR 94
          ++  D I+ V+   ++G T      + ++      V   + R
Sbjct: 44 METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGR 38
            D I+ V+   ++G T      + ++      V   + R
Sbjct: 46 TGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 57.5 bits (139), Expect = 2e-10
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 316 VELMKG-AEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL +  ++ LG+SI+G   MG     G    GIF+K + E   A ++G ++
Sbjct: 28  VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 79

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
           L+  D+I+EVDG  L   + E A   +R     V F++     
Sbjct: 78  LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 366 EGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           + LG+SI+G   MG     G    GIF+K + E   A ++G ++ 
Sbjct: 36  KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 80

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 50.9 bits (122), Expect = 5e-08
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
             D+I+EVDG  L   + E A   +R     V F++     
Sbjct: 80  PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L +   G G  I+G   G + G     I++  I   GAA  DGR++
Sbjct: 6   IFLWRKETGFGFRILG---GNEPGE---PIYIGHIVPLGAADTDGRLR 47

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              G G  I+G   G + G     I++  I   GAA  DGR++ 
Sbjct: 11  KETGFGFRILG---GNEPGE---PIYIGHIVPLGAADTDGRLRS 48

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 9/44 (20%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREK 96
          L+  D++I VDG  ++G + +    +++  +  G V   + + +
Sbjct: 46 LRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREK 40
            D++I VDG  ++G + +    +++  +  G V   + + +
Sbjct: 48 SGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQTR 89

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V  +    GLGL I+G   G +       +++  +   G   +DGR++
Sbjct: 18  VITVTKETGLGLKILG---GINRNEGP-LVYIHEVIPGGDCYKDGRLK 61

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +    GLGL I+G   G +       +++  +   G   +DGR++ 
Sbjct: 21  VTKETGLGLKILG---GINRNEGP-LVYIHEVIPGGDCYKDGRLKP 62

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 9/35 (25%), Positives = 20/35 (57%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVR 89
          L+  DQ++ ++ +S++GV+ E A S++        
Sbjct: 60 LKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSE 94

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVR 33
            DQ++ ++ +S++GV+ E A S++        
Sbjct: 62 PGDQLVSINKESMIGVSFEEAKSIITRAKLRSE 94

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 56.7 bits (137), Expect = 5e-10
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
             +  +L K + G G +++G   G +       + +K++   G AA DG+++
Sbjct: 18  KFIHTKLRKSSRGFGFTVVG---GDEPDE---FLQIKSLVLDGPAALDGKME 63

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
            + G G +++G   G +       + +K++   G AA DG+++ 
Sbjct: 27  SSRGFGFTVVG---GDEPDE---FLQIKSLVLDGPAALDGKMET 64

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 9/68 (13%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK-------DPVNSEVAQ 105
           ++  D I+ V+   ++G T      + ++      V   + R         DP  S V  
Sbjct: 62  METGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTS 121

Query: 106 LIRQSLQP 113
           +     +P
Sbjct: 122 VAILDKEP 129

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK 40
             D I+ V+   ++G T      + ++      V   + R  
Sbjct: 64  TGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 55.3 bits (134), Expect = 7e-10
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL K  EGLG +I+G   G +   +   I++  +   G A R G ++
Sbjct: 9   VELPKTDEGLGFNIMG---GKE---QNSPIYISRVIPGGVADRHGGLK 50

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 49.2 bits (118), Expect = 9e-08
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             EGLG +I+G   G +   +   I++  +   G A R G ++ 
Sbjct: 14  TDEGLGFNIMG---GKE---QNSPIYISRVIPGGVADRHGGLKR 51

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          L+  DQ++ V+G S+ G   E A  +L+   G V+ ++  
Sbjct: 49 LKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
            DQ++ V+G S+ G   E A  +L+   G V+ ++  
Sbjct: 51 RGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRS 88

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L KG+ GLG +I+G       G +  GIFV  I   G A   G ++
Sbjct: 19  IILHKGSTGLGFNIVG-------GEDGEGIFVSFILAGGPADLSGELR 59

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           L+  D+I+ V+G +L   T E AA+ L+     V  +     +  + 
Sbjct: 58  LRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSR 104

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G+ GLG +I+G       G +  GIFV  I   G A   G ++ 
Sbjct: 24  GSTGLGFNIVG-------GEDGEGIFVSFILAGGPADLSGELRR 60

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
             D+I+ V+G +L   T E AA+ L+     V  +     +  + 
Sbjct: 60  RGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRPEEYSR 104

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 55.9 bits (135), Expect = 9e-10
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + + +G+ GLG +I+G       G +  GIF+  I   G A   G ++
Sbjct: 18  IVIHRGSTGLGFNIVG-------GEDGEGIFISFILAGGPADLSGELR 58

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQS 110
           L+  DQI+ V+G  L   + E AA  L+N    V  +   + +  +   A     S
Sbjct: 57  LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G+ GLG +I+G       G +  GIF+  I   G A   G ++ 
Sbjct: 23  GSTGLGFNIVG-------GEDGEGIFISFILAGGPADLSGELRK 59

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQS 54
             DQI+ V+G  L   + E AA  L+N    V  +   + +  +   A     S
Sbjct: 59  KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDS 112

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L +   G G  I+G   G +       I +  +   G+A RDGR+ 
Sbjct: 13  VHLRRMESGFGFRILG---GDE---PGQPILIGAVIAMGSADRDGRLH 54

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              G G  I+G   G +       I +  +   G+A RDGR+  
Sbjct: 18  MESGFGFRILG---GDE---PGQPILIGAVIAMGSADRDGRLHP 55

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK 96
          L   D+++ VDG  + G T  Y   ++ +   +G V   + R+ 
Sbjct: 53 LHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREK 40
            D+++ VDG  + G T  Y   ++ +   +G V   + R+ 
Sbjct: 55 PGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKV 96

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 9/52 (17%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNT---SGLVRFLIGREKDPVNSEV 103
           ++  D +++V+  +   ++ + A  VLR+     G +   + +      +EV
Sbjct: 52  IEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEV 103

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 309 EKLTLLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
             + ++ V L       LG+SI    VG        GI++ +I + GA A DGRI+
Sbjct: 2   SHMNIITVTLNMEKYNFLGISI----VGQSNERGDGGIYIGSIMKGGAVAADGRIE 53

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNT---SGLVRFLIGREKDPVNSEV 47
             D +++V+  +   ++ + A  VLR+     G +   + +      +EV
Sbjct: 54  PGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGGGSGNEV 103

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +    LG+SI    VG        GI++ +I + GA A DGRI+ 
Sbjct: 14  EKYNFLGISI----VGQSNERGDGGIYIGSIMKGGAVAADGRIEP 54

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 298 ASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAA 357
           +S  Y       K+T    +      GLG+ I+G G        ++G ++  I   G+A 
Sbjct: 5   SSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVG-GKEIPGHSGEIGAYIAKILPGGSAE 63

Query: 358 RDGRIQ 363
           + G++ 
Sbjct: 64  QTGKLM 69

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
                 GLG+ I+G G        ++G ++  I   G+A + G++  
Sbjct: 25  HTVSGNGLGIRIVG-GKEIPGHSGEIGAYIAKILPGGSAEQTGKLME 70

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           L    Q++E +G  L   T E   S++   SG     +  + + 
Sbjct: 68  LMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM 111

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
              Q++E +G  L   T E   S++   SG     +  + + 
Sbjct: 70  EGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM 111

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + + +G+ GLG +I+G       G    GIF+  I   G A   G ++
Sbjct: 15  IVIHRGSTGLGFNIVG-------GEXGEGIFISFILAGGPADLSGELR 55

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 105
           L+  DQI+ V+G  L   + E AA  L+N    V  +   + +  +   A+
Sbjct: 54  LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQ 49
             DQI+ V+G  L   + E AA  L+N    V  +   + +  +   A+
Sbjct: 56  KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAK 104

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 7/44 (15%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G+ GLG +I+G       G    GIF+  I   G A   G ++ 
Sbjct: 20  GSTGLGFNIVG-------GEXGEGIFISFILAGGPADLSGELRK 56

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 52.8 bits (127), Expect = 7e-09
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
           LQ  D+II+ +G S + +    A S+L+     V  +I RE
Sbjct: 60  LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
             D+II+ +G S + +    A S+L+     V  +I RE
Sbjct: 62  PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 361 RIQGAEGLGLSIIGMGVGADA---GLEKLGIFVKTITEAGAAARDGRIQV 407
           R++    LG SI G GVG        +  GIFV  +   G A     +Q 
Sbjct: 16  RVEKDPELGFSISG-GVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQP 62

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 52.4 bits (126), Expect = 7e-09
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
          LQ  D+II+ +G S + +    A S+L+     V  +I RE
Sbjct: 52 LQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
            D+II+ +G S + +    A S+L+     V  +I RE
Sbjct: 54 PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 92

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 6/50 (12%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEK---LGIFVKTITEAGAAARDGRIQV 407
           R++    LG SI G GVG      +    GIFV  +   G A     +Q 
Sbjct: 8   RVEKDPELGFSISG-GVGGRGNPFRPDDDGIFVTRVQPEGPA--SKLLQP 54

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 53.3 bits (128), Expect = 8e-09
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 282 SMNEYDRRNEDVDPVAASAEYELEKRVEKLTL-----LGVELMKGAEGLGLSIIGMGVGA 336
           S       + D  PV      + ++ + ++ L      G         LGL ++G   G 
Sbjct: 2   SSGSSGHSHSDKHPVTWQPSKDGDRLIGRILLNKRLKDGSVPRDSGAMLGLKVVG---GK 58

Query: 337 DAGLEKLGIFVKTITEAGAAARDGRIQ 363
                +L  F+  + +   A   G ++
Sbjct: 59  MTESGRLCAFITKVKKGSLADTVGHLR 85

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
                LGL ++G   G      +L  F+  + +   A   G ++ 
Sbjct: 45  DSGAMLGLKVVG---GKMTESGRLCAFITKVKKGSLADTVGHLRP 86

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 98
           L+  D+++E +G+ L G T E   +++  +     V  ++ R    
Sbjct: 84  LRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPS 129

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 42
             D+++E +G+ L G T E   +++  +     V  ++ R    
Sbjct: 86  PGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGPS 129

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 6/43 (13%), Positives = 25/43 (58%)

Query: 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
          ++Q  D +++++G     ++   A +++  + G ++ ++ R++
Sbjct: 39 NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 81

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 5/40 (12%), Positives = 22/40 (55%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
            D +++++G     ++   A +++  + G ++ ++ R++
Sbjct: 42 EGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE 81

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 10/48 (20%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L+K  +     +               IFVK I++   AARDG IQ
Sbjct: 4   VTLVKSRKNEEYGLRLAS----------HIFVKEISQDSLAARDGNIQ 41

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 12/47 (25%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           + +  E  GL +               IFVK I++   AARDG IQ 
Sbjct: 8   KSRKNEEYGLRLAS------------HIFVKEISQDSLAARDGNIQE 42

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 52.1 bits (125), Expect = 2e-08
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           LQ ND+++ V+G  +  V   +A   LR +  +   ++ R +  
Sbjct: 63  LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 9/42 (21%), Positives = 20/42 (47%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            ND+++ V+G  +  V   +A   LR +  +   ++ R +  
Sbjct: 65  ENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKV 106

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K    G G+++ G          +  I +  +   G A  DG +Q
Sbjct: 18  VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQ 64

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
               G G+++ G          +  I +  +   G A  DG +Q 
Sbjct: 23  DSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQE 65

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +   +   GLG S+ G   GAD  LE   I V  +   G A+++G IQ
Sbjct: 20  ILHKEEGAGLGFSLAG---GAD--LENKVITVHRVFPNGLASQEGTIQ 62

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           +Q  ++++ ++GKSL G T   A ++LR      + +I   K  
Sbjct: 61  IQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT 104

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             +   GLG S+ G   GAD  LE   I V  +   G A+++G IQ 
Sbjct: 22  HKEEGAGLGFSLAG---GAD--LENKVITVHRVFPNGLASQEGTIQK 63

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
             ++++ ++GKSL G T   A ++LR      + +I   K  
Sbjct: 63  KGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKLT 104

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 316 VELMKGA-EGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VE+ +     LG+SI+G   +      G E  GIF+K + E   A +   ++
Sbjct: 19  VEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALK 70

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           L+  D+I+EV G  L   +   A   ++N    V F++      
Sbjct: 69  LKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST 112

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 49.8 bits (119), Expect = 9e-08
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 363 QGAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +    LG+SI+G   +      G E  GIF+K + E   A +   ++ 
Sbjct: 24  EPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKT 71

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
             D+I+EV G  L   +   A   ++N    V F++      
Sbjct: 71  TGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSST 112

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 8/48 (16%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V + K  + LGL+I   GVG          F+K I + G       I 
Sbjct: 9   VNVYKSEDSLGLTITDNGVG--------YAFIKRIKDGGVIDSVKTIC 48

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 8/44 (18%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             + LGL+I   GVG          F+K I + G       I V
Sbjct: 14  SEDSLGLTITDNGVG--------YAFIKRIKDGGVIDSVKTICV 49

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
          + V D I  ++G+++VG      A  L+       F +
Sbjct: 47 ICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTM 84

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
           +   D+I  V+G+S+ G T+   A +++   G V     + +
Sbjct: 64  VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 105

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)

Query: 296 VAASAEYELEKRVEKLTLLG--VELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITE 352
           + A  +Y++E+    +  +   V L K A+  +G+SI G   GA        +++  + +
Sbjct: 1   MFADLDYDIEEDKLGIPTVPGKVTLQKDAQNLIGISIGG---GAQ---YCPCLYIVQVFD 54

Query: 353 AGAAARDGRIQ 363
              AA DG + 
Sbjct: 55  NTPAALDGTVA 65

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
             D+I  V+G+S+ G T+   A +++   G V     + +
Sbjct: 66  AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 105

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
                +G+SI G   GA        +++  + +   AA DG +  
Sbjct: 28  DAQNLIGISIGG---GAQ---YCPCLYIVQVFDNTPAALDGTVAA 66

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 50.6 bits (121), Expect = 6e-08
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
            ++  +L  G  GLGL +I  G           + +  +   GAAA DG +Q
Sbjct: 27  KVIQTKLTVGNLGLGLVVIQNG---------PYLQISHLINKGAAASDGILQ 69

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 9/44 (20%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G  GLGL +I  G           + +  +   GAAA DG +Q 
Sbjct: 36  GNLGLGLVVIQNG---------PYLQISHLINKGAAASDGILQP 70

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDPV 99
           LQ  D +I V   +++G T      +L+N +   +++    R    +
Sbjct: 68  LQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEI 114

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDPV 43
             D +I V   +++G T      +L+N +   +++    R    +
Sbjct: 70  PGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFLEI 114

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 49.3 bits (118), Expect = 8e-08
 Identities = 6/45 (13%), Positives = 25/45 (55%)

Query: 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          ++Q  D +++++G     ++   A +++  + G ++ ++ R++  
Sbjct: 41 NIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERA 85

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 5/42 (11%), Positives = 22/42 (52%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D +++++G     ++   A +++  + G ++ ++ R++  
Sbjct: 44 EGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDERA 85

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 10/48 (20%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L+K A+     +               IFVK I++   AARDG IQ
Sbjct: 6   VTLVKSAKNEEYGLRLAS----------HIFVKEISQDSLAARDGNIQ 43

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 12/47 (25%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +    E  GL +               IFVK I++   AARDG IQ 
Sbjct: 10  KSAKNEEYGLRLAS------------HIFVKEISQDSLAARDGNIQE 44

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K   EGLG++++  G G+          +  +   G A R G + 
Sbjct: 13  VHLEKRRGEGLGVALVESGWGSLLP----TAVIANLLHGGPAERSGALS 57

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          L + D++  ++G SLVG+      + +R T       +     P
Sbjct: 56 LSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           EGLG++++  G G+          +  +   G A R G + +
Sbjct: 21  EGLGVALVESGWGSLLP----TAVIANLLHGGPAERSGALSI 58

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
          + D++  ++G SLVG+      + +R T       +     P
Sbjct: 58 IGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP 99

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K    GLG  +          + K  + +  +   GAA + G IQ
Sbjct: 5   VRLFKRKVGGLGFLVKE-------RVSKPPVIISDLIRGGAAEQSGLIQ 46

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +   GLG  +          + K  + +  +   GAA + G IQ 
Sbjct: 10  RKVGGLGFLVKE-------RVSKPPVIISDLIRGGAAEQSGLIQA 47

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          +Q  D I+ V+ + LV ++ + A  VLR  +     ++      
Sbjct: 45 IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 88

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D I+ V+ + LV ++ + A  VLR  +     ++      
Sbjct: 47 AGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 88

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 8/49 (16%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K    GLG  +          + K  + +  +   GAA + G IQ
Sbjct: 12  VRLFKRKVGGLGFLVKE-------RVSKPPVIISDLIRGGAAEQSGLIQ 53

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 7/45 (15%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +   GLG  +          + K  + +  +   GAA + G IQ 
Sbjct: 17  RKVGGLGFLVKE-------RVSKPPVIISDLIRGGAAEQSGLIQA 54

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          +Q  D I+ V+ + LV ++ + A  VLR  +     ++      
Sbjct: 52 IQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 95

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 9/42 (21%), Positives = 18/42 (42%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D I+ V+ + LV ++ + A  VLR  +     ++      
Sbjct: 54 AGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPE 95

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 10/51 (19%)

Query: 313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           ++GV LMK        +               IFVK +T  G A +DG + 
Sbjct: 1   MIGVLLMKSRANEEYGLRLGS----------QIFVKEMTRTGLATKDGNLH 41

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 7/45 (15%), Positives = 23/45 (51%)

Query: 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          +L   D I++++G     ++   A  ++  + G ++ ++ R+ + 
Sbjct: 39 NLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEH 83

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 6/42 (14%), Positives = 21/42 (50%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D I++++G     ++   A  ++  + G ++ ++ R+ + 
Sbjct: 42 EGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLEH 83

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 10/44 (22%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
                   +               IFVK +T  G A +DG +  
Sbjct: 9   SRANEEYGLRLGS----------QIFVKEMTRTGLATKDGNLHE 42

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +  +K    L L++ G   G D+ +    + V  + E GAA R G + 
Sbjct: 21  LLRIKKEGSLDLALEG---GVDSPVG--KVVVSAVYEGGAAERHGGVV 63

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           RI+    L L++ G   G D+ +    + V  + E GAA R G +  
Sbjct: 23  RIKKEGSLDLALEG---GVDSPVG--KVVVSAVYEGGAAERHGGVVK 64

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 44.4 bits (105), Expect = 7e-06
 Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRN----TSGLVRFLIGREKDPVNSE 102
           +   D+I+ ++GK +   T   A + L+         +  ++         +
Sbjct: 62  VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDD 113

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRN----TSGLVRFLIGREKDPVNSE 46
             D+I+ ++GK +   T   A + L+         +  ++         +
Sbjct: 64  KGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDD 113

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
           +   D+I  V+G+S+ G T+   A +++   G V     + +
Sbjct: 69  VAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 110

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 316 VELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K A+  +G+SI G   GA        +++  + +   AA DG + 
Sbjct: 28  VTLQKDAQNLIGISIGG---GAQ---YCPCLYIVQVFDNTPAALDGTVA 70

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
             D+I  V+G+S+ G T+   A +++   G V     + +
Sbjct: 71  AGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQ 110

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 6/45 (13%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
                +G+SI G   GA        +++  + +   AA DG +  
Sbjct: 33  DAQNLIGISIGG---GAQ---YCPCLYIVQVFDNTPAALDGTVAA 71

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 9/44 (20%), Positives = 20/44 (45%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           L   D+++E++G  + G        +L +  G + F++     P
Sbjct: 67  LHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP 110

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
             D+++E++G  + G        +L +  G + F++     P
Sbjct: 69  EGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSSGP 110

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 316 VELMKG--AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V+L +    + LGL++           + +GI++  I     AA+DGRI+
Sbjct: 23  VDLYRMNSQDKLGLTV----CYRTDDEDDIGIYISEIDPNSIAAKDGRIR 68

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           R+   + LGL++           + +GI++  I     AA+DGRI+ 
Sbjct: 27  RMNSQDKLGLTV----CYRTDDEDDIGIYISEIDPNSIAAKDGRIRE 69

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
           L   D I+ +DG S+   +   A  +L + S  VR  I  
Sbjct: 61  LHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VE++K     LG+S+        +   K  I +  I  A    R G + 
Sbjct: 19  VEIVKTPGSALGISLTT-----TSLRNKSVITIDRIKPASVVDRSGALH 62

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
             D I+ +DG S+   +   A  +L + S  VR  I  
Sbjct: 63  PGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILP 100

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 5/42 (11%)

Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             LG+S+        +   K  I +  I  A    R G +  
Sbjct: 27  SALGISLTT-----TSLRNKSVITIDRIKPASVVDRSGALHP 63

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
          L V D I+ V+G+ L   T + A   L+ T   V   +   K
Sbjct: 49 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 90

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V + K  A GLG+SI G   G +    K+ I +  I +  AA +   + 
Sbjct: 8   VTVRKADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALF 50

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             A GLG+SI G   G +    K+ I +  I +  AA +   + V
Sbjct: 13  ADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALFV 51

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
          V D I+ V+G+ L   T + A   L+ T   V   +   K
Sbjct: 51 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 90

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V + K A  LG++I G   GA+         + TI   G+A   G+++
Sbjct: 10  VRVKKSAATLGIAIEG---GANTRQP--LPRIVTIQRGGSAHNCGQLK 52

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 5/45 (11%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           + A  LG++I G   GA+         + TI   G+A   G+++V
Sbjct: 14  KSAATLGIAIEG---GANTRQP--LPRIVTIQRGGSAHNCGQLKV 53

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLV 88
          L+V   I+EV+G +L G     AA ++       
Sbjct: 51 LKVGHVILEVNGLTLRGKEHREAARIIAEAFKTK 84

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 9/43 (20%), Positives = 24/43 (55%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
           L+V D+I+ V+G+S++ +       ++++    V   I  +++
Sbjct: 62  LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 363 QGAEGLGLSIIGMGVGADAGLE-KLGIFVKTITEAGAAARDGRIQV 407
           +  EG G  II      ++G    +   +  I +   A R  +++V
Sbjct: 19  KENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKV 64

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLE-KLGIFVKTITEAGAAARDGRIQ 363
           V + +   EG G  II      ++G    +   +  I +   A R  +++
Sbjct: 14  VVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLK 63

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 8/41 (19%), Positives = 22/41 (53%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
           V D+I+ V+G+S++ +       ++++    V   I  +++
Sbjct: 64  VGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +  EGLG+SI G   G +     + I +  I     A R G + V
Sbjct: 18  EDHEGLGISITG---GKE---HGVPILISEIHPGQPADRCGGLHV 56

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L +  EGLG+SI G   G +     + I +  I     A R G + 
Sbjct: 14  LLLKEDHEGLGISITG---GKE---HGVPILISEIHPGQPADRCGGLH 55

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
           L V D I+ V+G +L     + A ++L    G + F +       +  
Sbjct: 54  LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHH 101

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 10/46 (21%), Positives = 19/46 (41%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
           V D I+ V+G +L     + A ++L    G + F +       +  
Sbjct: 56  VGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHH 101

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
          ++ L+V DQI+ V+ KSL  VT   A   L+ +  LV  +    +   
Sbjct: 50 KEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISG 97

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           +   K  EGLG SI G   G++ G+   GI+V  +     A ++G
Sbjct: 14  LRRAKAHEGLGFSIRG---GSEHGV---GIYVSLVEPGSLAEKEG 52

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
           R +  EGLG SI G   G++ G+   GI+V  +     A ++G
Sbjct: 16  RAKAHEGLGFSIRG---GSEHGV---GIYVSLVEPGSLAEKEG 52

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 43
          V DQI+ V+ KSL  VT   A   L+ +  LV  +    +   
Sbjct: 55 VGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISG 97

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 8/38 (21%), Positives = 21/38 (55%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
          L V D+I+E++G ++   + +     ++ T G++   +
Sbjct: 55 LHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 7/36 (19%), Positives = 20/36 (55%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
          V D+I+E++G ++   + +     ++ T G++   +
Sbjct: 57 VGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKV 92

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +  EGLG+SI G   G +     + I +  I     A R G + V
Sbjct: 36  EDHEGLGISITG---GKE---HGVPILISEIHPGQPADRCGGLHV 74

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 7/49 (14%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L+K   EGLG+SI G   G +     + I +  I     A R G + 
Sbjct: 31  VLLLKEDHEGLGISITG---GKE---HGVPILISEIHPGQPADRCGGLH 73

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
           L V D I+ V+G +L     + A ++L    G + F +
Sbjct: 72  LHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
           V D I+ V+G +L     + A ++L    G + F +
Sbjct: 74  VGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEV 109

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 9/47 (19%), Positives = 20/47 (42%)

Query: 52  RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           +  L+  DQ++E +G +L   T++ A  ++      +  L       
Sbjct: 57  QAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHV 103

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           V++ KG+E LG+SI+    G   G     I+V  +T    A + G
Sbjct: 23  VKVQKGSEPLGISIVS---GEKGG-----IYVSKVTVGSIAHQAG 59

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 41.7 bits (98), Expect = 7e-05
 Identities = 8/42 (19%), Positives = 17/42 (40%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
             DQ++E +G +L   T++ A  ++      +  L       
Sbjct: 62  YGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPHV 103

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
           +L V D+I E++G S+   T E    +LR   G + F I
Sbjct: 42 GTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI 81

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
          V D+I E++G S+   T E    +LR   G + F I
Sbjct: 46 VGDEIREINGISVANQTVEQLQKMLREMRGSITFKI 81

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L+K  E LG +I           +   I V  I   GAA R G I 
Sbjct: 8   IRLVKNREPLGATIKK-------DEQTGAIIVARIMRGGAADRSGLIH 48

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
          + V D++ EV+G  +     E    +L  + G + F I
Sbjct: 47 IHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
          V D++ EV+G  +     E    +L  + G + F I
Sbjct: 49 VGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKI 84

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 7/44 (15%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             E LG +I           +   I V  I   GAA R G I V
Sbjct: 13  NREPLGATIKK-------DEQTGAIIVARIMRGGAADRSGLIHV 49

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 13/118 (11%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQPC 114
           L V D I+ V+G+ L   T + A   L+ T   V   +   K+                 
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEVSP-------YFKNSAG 174

Query: 115 LTLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTL------QNETEEEDENTFTEFV 166
            T + +  P  + +     S     R  S    V+L      +  T  + E  + E  
Sbjct: 175 GTSVGWDSPPASPLQRQPSSPGPQPRNLSEAKHVSLKMAYVSRRCTPTDPEPRYLEIC 232

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 44.0 bits (103), Expect = 6e-05
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V + K  A GLG+SI G   G +    K+ I +  I +  AA +   + 
Sbjct: 81  VTVRKADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALF 123

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 6/45 (13%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
             A GLG+SI G   G +    K+ I +  I +  AA +   + V
Sbjct: 86  ADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALFV 124

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
           V D I+ V+G+ L   T + A   L+ T   V   +   K+ 
Sbjct: 124 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKEV 165

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 28/96 (29%)

Query: 406 QVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEMEAE-LK 464
           ++ + P+  ++ W        +  + K LQ L            +     E E   +  K
Sbjct: 79  RLTQEPE-SIRKW--------REEQRKRLQELD-----------AASKVMEQEWREKAKK 118

Query: 465 ELEDDGFLLEY--QKEKMK---QMYDRLFLSEIDSE 495
           +LE+  +      Q EK K   ++ D+ F  + D++
Sbjct: 119 DLEE--WNQRQSEQVEKNKINNRIADKAFYQQPDAD 152

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 291 EDVDPVAASAEYELEKRVEKLTLLGVELMKGA--EGLGLSIIG---MGVGADAGLEKLGI 345
           +D  PV++  + ++     +     V L K    + LG  I     + V      +  GI
Sbjct: 12  QDFRPVSSIIDVDILPETHRR----VRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGI 67

Query: 346 FVKTITEAGAAARDGRIQ 363
           F+  +   G A   G + 
Sbjct: 68  FISRLVPGGLAQSTGLLA 85

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 361 RIQGAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +    + LG  I     + V      +  GIF+  +   G A   G + V
Sbjct: 37  KYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAV 86

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
           L VND+++EV+G  + G + +    ++   S  +   +
Sbjct: 84  LAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
           VND+++EV+G  + G + +    ++   S  +   +
Sbjct: 86  VNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITV 121

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
           LQ+ D+++ ++G      T E A  +LR++S   +  +  E D   S +
Sbjct: 64  LQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI 112

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L      G G+ + G  V A   L      +  I     A R G +Q
Sbjct: 19  VVLTADPVTGFGIQLQG-SVFATETL-SSPPLISYIEADSPAERCGVLQ 65

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
               G G+ + G  V A   L      +  I     A R G +Q+
Sbjct: 24  DPVTGFGIQLQG-SVFATETL-SSPPLISYIEADSPAERCGVLQI 66

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
           + D+++ ++G      T E A  +LR++S   +  +  E D   S +
Sbjct: 66  IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI 112

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 5/43 (11%), Positives = 16/43 (37%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
             L+  D++++V+              ++  +   +  +I R
Sbjct: 47 LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 4/38 (10%), Positives = 14/38 (36%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
            D++++V+              ++  +   +  +I R
Sbjct: 52 PYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR 89

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 9/47 (19%)

Query: 316 VELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           V L K +  E  G S+         GL + G++VK I  AG     G
Sbjct: 10  VTLYKDSGMEDFGFSVAD-------GLLEKGVYVKNIRPAGPGDLGG 49

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 19/117 (16%), Positives = 38/117 (32%)

Query: 53  QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVAQLIRQSLQ 112
           + LQ  D+II+ +G S + +    A S+L+     V  +I RE      +  ++  +   
Sbjct: 39  KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDG 98

Query: 113 PCLTLLNFGDPLETGIISSVGSMDELDRVSSSRDSVTLQNETEEEDENTFTEFVPEP 169
               + +    LE    +    +   D          +       +       VP  
Sbjct: 99  GSGGVSSVPTNLEVVAATPTSLLISWDASYYGVSYYRITYGETGGNSPVQEFTVPYS 155

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 10/47 (21%), Positives = 19/47 (40%)

Query: 52  RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           ++ L+  DQI+ V+      + +E A   L +        I  +K  
Sbjct: 66  KEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 8/43 (18%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
           + +  + +GL + G   G D     +GIFV  + E   AA++G
Sbjct: 34  KFRKGDSVGLRLAG---GND-----VGIFVAGVLEDSPAAKEG 68

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 9/45 (20%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           V+  KG + +GL + G   G D     +GIFV  + E   AA++G
Sbjct: 33  VKFRKG-DSVGLRLAG---GND-----VGIFVAGVLEDSPAAKEG 68

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 9/42 (21%), Positives = 15/42 (35%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
             DQI+ V+      + +E A   L +        I  +K  
Sbjct: 71  EGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 112

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          L   DQI++++ +    ++ E A  +LR     +   + R
Sbjct: 48 LFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 8/38 (21%), Positives = 18/38 (47%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
            DQI++++ +    ++ E A  +LR     +   + R
Sbjct: 50 PGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVR 87

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          L   D+++EV+G+++   T +   S +R     VR L+   +  
Sbjct: 45 LLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 7/45 (15%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
             L KG  G G  + G          KLG +++ +     A + G
Sbjct: 7   CCLEKGPNGYGFHLHG-------EKGKLGQYIRLVEPGSPAEKAG 44

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D+++EV+G+++   T +   S +R     VR L+   +  
Sbjct: 47 AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPETD 88

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 52  RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKDP 98
              LQ+ D+I++V+G  +  VT + A   L   S  +VR L+ R+   
Sbjct: 79  IAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ 126

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKDP 42
           + D+I++V+G  +  VT + A   L   S  +VR L+ R+   
Sbjct: 84  IGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQSLQ 126

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDPVNSEVAQL 106
           LQ  D I E+  +++  +T      VL+       V  LI R   P  ++ A++
Sbjct: 50  LQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKM 103

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 52  RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
              L++ DQI+EV+G     +  + A +VL+++  L   ++      +
Sbjct: 56  EVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGREL 103

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 6/43 (13%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
            + G+ GLG SI     G     +K GIF+  +     +A  G
Sbjct: 22  SLVGSRGLGCSISS---GPI---QKPGIFISHVKPGSLSAEVG 58

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 6/41 (14%)

Query: 320 KGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
            G+ GLG SI     G     +K GIF+  +     +A  G
Sbjct: 24  VGSRGLGCSISS---GPI---QKPGIFISHVKPGSLSAEVG 58

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 43
           + DQI+EV+G     +  + A +VL+++  L   ++      +
Sbjct: 61  IGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGREL 103

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPV 99
          L+  D I+ ++G+S   +    A S +R ++  +R  + R   P 
Sbjct: 48 LRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGPS 92

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
          R  L     I E++G++++G+     A +L  +  +V   I
Sbjct: 38 RNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI 78

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 260 SYARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELM 319
            Y + +     + D K V +  S          + P+    EY+         L  V L 
Sbjct: 32  MYHQTMDVAVLVGDLKLVINEPSRLPLFDAIRPLIPLKHQVEYDQLTPRRSRKLKEVRLD 91

Query: 320 K-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           +   EGLGLS+ G   G +      G+F+  + + G A   G
Sbjct: 92  RLHPEGLGLSVRG---GLE---FGCGLFISHLIKGGQADSVG 127

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 98
          L   D I+E++ +++  ++      +L++         +I R   P
Sbjct: 48 LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP 93

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
           +++ D ++ +DG S  G+T   A + ++  +G +   + R      SE
Sbjct: 47  VRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSE 94

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 19/47 (40%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           L   D I+ +DG     +T   A   ++  S  +   I R +  + S
Sbjct: 47  LCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWS 93

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           V L K     LG +I G   G      +LGIF+  +     A R G
Sbjct: 19  VTLKKPPGAQLGFNIRG---GKA---SQLGIFISKVIPDSDAHRAG 58

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 52  RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           R  LQ  DQ++ V+      +    A  +L+  +  +   +     P
Sbjct: 56  RAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSGP 101

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 6/41 (14%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 403
                LG +I G   G      +LGIF+  +     A R G
Sbjct: 24  PPGAQLGFNIRG---GKA---SQLGIFISKVIPDSDAHRAG 58

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 52  RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
              L+V DQI+EV+G+S + +  + A  +L+++  L+  +    + P    
Sbjct: 61  GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRLPHART 111

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           V L+ G    LGL+I G   GA+ GL   GI++  +     A   G
Sbjct: 24  VNLVLGDGRSLGLTIRG---GAEYGL---GIYITGVDPGSEAEGSG 63

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          LQ  D +++++ + +        A  +R+    +  L+ R   P
Sbjct: 54 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGP 97

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +QG    G ++ G   G +       + V  I + G AA   +++ 
Sbjct: 17  LQGGAPWGFTLKG---GLE---HCEPLTVSKIEDGGKAALSQKMRT 56

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 318 LMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
            ++G    G ++ G   G +       + V  I + G AA   +++
Sbjct: 16  QLQGGAPWGFTLKG---GLE---HCEPLTVSKIEDGGKAALSQKMR 55

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 316 VELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG 360
           V + K   G LG S+ G   G++     LGIFV  + E  +A R G
Sbjct: 14  VRVEKSPAGRLGFSVRG---GSE---HGLGIFVSKVEEGSSAERAG 53

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLV 88
          R  L V D+I EV+G SL   T   A  VL ++S L 
Sbjct: 51 RAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLH 87

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 10/43 (23%), Positives = 24/43 (55%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
          +++ D ++ +DG +  G+T   A + ++  +G +   + RE D
Sbjct: 45 VRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRESD 87

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 7/49 (14%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQG 364
             L+K     G S+            K G+++  IT  G A R G +  
Sbjct: 12  CYLVKEGGSYGFSLKT-------VQGKKGVYMTDITPQGVAMRAGVLAD 53

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
          R  ++V  +IIE++G+S+V    E    +L N  G +    
Sbjct: 46 RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKT 86

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 9/42 (21%), Positives = 21/42 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
          L+  D++IEV+G+++ G+      + ++      R L+    
Sbjct: 46 LRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS 87

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 11/40 (27%), Positives = 21/40 (52%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          L+  D I+ ++G+S  G+    A S +R +   +R  + R
Sbjct: 44 LRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDR 83

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 16/45 (35%)

Query: 476 QKEKMKQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSL 520
           +K+ +K++   L L   D            S+P+L    A+ +++
Sbjct: 18  EKQALKKLQASLKLYADD------------SAPAL----AIKATM 46

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          L+  DQI+ V+  ++   + E    ++   SG++  +I  
Sbjct: 41 LRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAE 80

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
          L+  D+I+EV+G  + G       S +R      + L+   + 
Sbjct: 51 LRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRET 93

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREK 96
          L+  D I+EV+ K++  +T      +L  +     V  L+ R+ 
Sbjct: 43 LKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQT 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	612
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	100.0
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.98
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.91
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.77
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.74
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.73
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.71
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.69
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.65
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.61
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.6
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.55
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.54
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.54
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.54
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.53
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.52
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.52
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.51
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.51
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.5
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.49
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.49
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.48
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.48
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.47
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.47
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.47
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.47
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.46
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.46
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.46
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.46
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.46
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.45
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.45
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.45
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.45
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.45
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.45
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.45
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.44
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.44
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.44
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.44
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.43
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.43
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.43
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.43
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.43
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.43
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.43
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.42
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.42
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.41
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.4
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.4
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.4
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.4
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.4
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.39
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.39
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.38
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.38
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.38
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.38
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.37
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.37
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.36
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.36
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.35
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.35
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.35
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.35
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.34
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.33
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.31
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.29
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.28
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.27
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.27
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.92
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.26
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.25
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.25
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.24
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.24
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.23
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.21
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.21
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.19
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.19
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.19
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.19
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.13
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.12
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.12
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.12
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.09
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.09
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.09
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.08
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.07
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.06
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.05
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.62
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.04
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.04
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.03
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.02
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.02
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.0
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.99
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.99
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.99
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.98
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.98
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.98
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.97
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.96
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.96
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.95
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.95
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.94
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.94
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	98.93
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.93
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.93
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.92
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.92
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.91
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	98.91
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.9
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.9
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.89
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.88
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.88
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.88
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.87
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.87
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.87
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.86
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.86
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.84
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.84
2awx_A	105	Synapse associated protein 97; membrane protein, s	98.83
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.83
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.82
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.82
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.82
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.81
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.81
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.81
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.81
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.8
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.8
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.8
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	98.79
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.79
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.77
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.77
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.75
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.75
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	98.75
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.74
2fne_A	117	Multiple PDZ domain protein; structural protein, s	98.74
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	98.73
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.73
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.73
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.73
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.72
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.71
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.71
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.71
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.7
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.67
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.67
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.67
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.66
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	98.65
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	98.65
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.65
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.65
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.64
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.64
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.64
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	98.64
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	98.64
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.64
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.64
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.63
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	98.63
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.63
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.63
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	98.62
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.62
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.61
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	98.6
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.58
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.58
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.57
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.57
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	98.57
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.56
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.56
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.56
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.56
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.55
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.54
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.54
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.53
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.53
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.52
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.52
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.51
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.5
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.5
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.5
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.5
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	98.49
2opg_A	98	Multiple PDZ domain protein; structural protein, s	98.48
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.47
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.47
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	98.47
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	98.46
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	97.84
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.46
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.45
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.44
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.44
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.82
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.43
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	98.42
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.42
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	98.41
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.41
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	98.41
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	98.4
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.4
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.39
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	98.38
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.38
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.38
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.38
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	98.37
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.37
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.37
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.36
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	98.36
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.36
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.36
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.35
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.35
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.35
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.35
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.34
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.33
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.32
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.32
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.32
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	98.31
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.31
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.3
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	98.29
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.29
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.29
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.28
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.28
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.27
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	98.27
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.26
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.26
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.26
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.26
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	98.26
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	98.25
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	98.24
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.23
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	98.23
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	98.23
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.23
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.21
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.21
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	98.21
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.21
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.2
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.2
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.19
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	98.19
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.18
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	98.18
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.18
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.18
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	98.17
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.17
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.15
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.14
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.14
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.12
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.12
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	98.11
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.11
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.11
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.09
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	98.09
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.09
2ego_A	96	General receptor for phosphoinositides 1- associat	98.08
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.08
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	98.08
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.08
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.08
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.07
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.06
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.06
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	98.06
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.05
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.05
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.05
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.05
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.05
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.05
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	98.05
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.04
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.03
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.02
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	98.02
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.01
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	98.01
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.0
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.25
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	97.99
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	97.99
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.99
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	97.98
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	97.96
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	97.96
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	97.96
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.96
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	97.96
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	97.96
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.96
3khf_A	99	Microtubule-associated serine/threonine-protein ki	97.95
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	97.95
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	97.93
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	97.92
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	97.92
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	97.91
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	97.9
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	97.9
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	97.9
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	97.89
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	97.89
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	97.88
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	97.88
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	97.86
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	97.86
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	97.85
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	97.85
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	97.85
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	97.84
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	97.83
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	97.83
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	97.83
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	97.83
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	97.82
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	97.82
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	97.82
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	97.82
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.81
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	97.81
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	97.81
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	97.79
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	97.78
4amh_A	106	Disks large homolog 1; permutation, protein foldin	97.78
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.78
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.78
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	97.78
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.78
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	97.76
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	97.76
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	97.75
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	97.74
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	97.74
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	97.74
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	97.73
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	97.73
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	97.73
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	97.73
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	97.73
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	97.73
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	97.72
2fne_A	117	Multiple PDZ domain protein; structural protein, s	97.72
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	97.72
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	97.7
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	97.68
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	97.68
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	97.68
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	97.68
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	97.67
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	97.66
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	97.66
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	97.66
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	97.66
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	97.66
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	97.66
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	97.66
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	97.66
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	97.65
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	97.65
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	97.65
2awx_A	105	Synapse associated protein 97; membrane protein, s	97.65
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.65
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	97.64
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	97.64
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	97.64
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	97.63
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	97.63
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	97.63
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	97.62
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	97.62
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	97.62
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	97.61
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	97.61
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	97.6
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	97.59
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	97.58
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	97.58
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	97.58
2opg_A	98	Multiple PDZ domain protein; structural protein, s	97.58
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	97.57
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	97.56
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	97.56
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	97.56
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	97.55
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	97.55
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	97.55
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	97.54
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.54
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	97.54
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	97.54
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	97.54
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	97.54
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	97.53
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	97.53
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	97.52
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	97.51
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	97.51
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	97.51
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	97.51
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	97.5
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	97.5
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	97.49
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	97.48
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	97.48
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	97.48
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	97.47
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	97.47
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.47
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	97.46
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	97.46
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	97.46
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	97.46
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	97.45
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	97.45
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	97.45
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	97.45
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	97.44
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	97.44
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	97.44
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	97.44
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	97.43
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	97.43
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	97.43
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	97.43
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	97.42
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.42
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	97.4
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	97.4
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	97.4
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	97.4
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	97.4
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	97.39
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	97.39
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.39
2d90_A	102	PDZ domain containing protein 1; structural genomi	97.38
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	97.38
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	97.38
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	97.37
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	97.37
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.36
3khf_A	99	Microtubule-associated serine/threonine-protein ki	97.36
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	97.36
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.35
2ego_A	96	General receptor for phosphoinositides 1- associat	97.34
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	97.34
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	97.33
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.33
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	97.31
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	97.31
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	97.3

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=100.00  E-value=2.5e-34  Score=289.58  Aligned_cols=193  Identities=31%  Similarity=0.541  Sum_probs=139.2

Q ss_pred             eeccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccChHHHHH--------HHHHHHHhhhccchhHHHHHHH
Q psy12938        406 QVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARK--------EAEMEAELKELEDDGFLLEYQK  477 (612)
Q Consensus       406 ~~~~~~~gv~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~--------~~e~~~~l~el~Dd~~l~~yr~  477 (612)
                      ..+|||||||+|||+|| +..+++.....++.+.++++++++.+..++..        .+|.+..-++.+|++||++||+
T Consensus        17 ~~~TGpKGVi~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d~eDe~fL~~~r~   95 (245)
T 1a0r_P           17 ASHTGPKGVINDWRKFK-LESEDSDSVAHSKKEILRQMSSPQSRDDKDSKERFSRKMSVQEYELIHKDKEDENCLRKYRR   95 (245)
T ss_dssp             CCSSHHHHHHHHHHHHH-HHTC------------------------------CCCCSCHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCCCcchHHHHHHHHH-HHHhhhhhhHHHHHHHHHhccccccCCccccchhhhccCChhhhhhcccccccHHHHHHHHH
Confidence            56999999999999999 55544444455566777888888875532111        1122222224467899999999


Q ss_pred             HHHHHHHHH-----------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc
Q psy12938        478 EKMKQMYDR-----------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV  540 (612)
Q Consensus       478 ~R~~el~~~-----------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~  540 (612)
                      +||+||+..                 .|.+.|.+..+..+||||||++||++|+.|.++|..||++|+.++|++|+++..
T Consensus        96 ~Rl~el~~~~~~~~~~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~~  175 (245)
T 1a0r_P           96 QCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASNT  175 (245)
T ss_dssp             HHHHHHHHHHCCCCCCCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHHH
T ss_pred             HHHHHHHHHhhccCCCCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCcH
Confidence            999999863                 477777665567799999999999999999999999999999999999998762


Q ss_pred             hhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCCCCCC
Q psy12938        541 GDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAGGLPG  601 (612)
Q Consensus       541 ~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~~~~~  601 (612)
                        .++.+|.+.++||+++|++|+.+.+++|+...+|.+|+.++|++||.++|+|+++++.-
T Consensus       176 --~l~~~~~I~~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~l~~~~~~~  234 (245)
T 1a0r_P          176 --GAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLLPEKEMHV  234 (245)
T ss_dssp             --CCTTSSCTTTCSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTCSCCC----
T ss_pred             --HHHHHCCCCCCCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHcCCCCCcccch
Confidence              57789999999999999999999999999888888999999999999999999888643

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.98  E-value=7.2e-34  Score=281.87  Aligned_cols=189  Identities=30%  Similarity=0.546  Sum_probs=152.7

Q ss_pred             eeccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccChHHH--------HHHHHHHHHhhhccchhHHHHHHH
Q psy12938        406 QVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEA--------RKEAEMEAELKELEDDGFLLEYQK  477 (612)
Q Consensus       406 ~~~~~~~gv~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~--------~~~~e~~~~l~el~Dd~~l~~yr~  477 (612)
                      ..+|||||||+|||+|+ +..+++.....++...++++++++++..++        ...+|.++.-++.+|++||++||+
T Consensus         4 ~~~tgpkgvi~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~d~~d~~fl~~~r~   82 (217)
T 2trc_P            4 ATHTGPKGVINDWRKFK-LESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRR   82 (217)
T ss_dssp             CCSSHHHHHHHHHHHHH-HHHTTCSSSTTSCSSCSCSSCCSSSSCCGGGSSCCCCSSCHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             CCCCCcchHHHHHHHHH-HhhhhhhhhhHHHHHHHHHhcccccCCchhhhhhhhccCChhhhhhhccccccHHHHHHHHH
Confidence            46999999999999999 554433333333445567788887654211        011222222224467899999999


Q ss_pred             HHHHHHHHH-----------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc
Q psy12938        478 EKMKQMYDR-----------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV  540 (612)
Q Consensus       478 ~R~~el~~~-----------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~  540 (612)
                      +||+||+..                 .|.+.|.+..++.+||||||++||++|+.|.++|..||++|+.++|++|+++ .
T Consensus        83 ~Rl~el~~~~~~~~~~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~  161 (217)
T 2trc_P           83 QCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-N  161 (217)
T ss_dssp             HHHHHHHHHHCCCCCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-H
T ss_pred             HHHHHHHHHHHhccCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-c
Confidence            999999863                 4777777655567999999999999999999999999999999999999998 4


Q ss_pred             hhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCC
Q psy12938        541 GDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAG  597 (612)
Q Consensus       541 ~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~  597 (612)
                      + .++.+|.+.++||+++|++|+.+.+++|+...+|.+|+.++|++||.++|+|+++
T Consensus       162 ~-~l~~~~~i~~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g~l~~k  217 (217)
T 2trc_P          162 T-GAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLLPER  217 (217)
T ss_dssp             H-TCSTTSCGGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTTCSCCC
T ss_pred             H-HHHHHCCCCCCCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHcCCCCCC
Confidence            4 6778999999999999999999999999999999999999999999999999764

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.91  E-value=2.3e-24  Score=193.12  Aligned_cols=109  Identities=25%  Similarity=0.464  Sum_probs=100.0

Q ss_pred             HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      .++|.++|.+.+++.+||||||++||++|+.|+++|++||++|++++|++||++..    +++|.++++|||++||||+.
T Consensus        10 ~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~----~~~~~v~~~PT~~~fk~G~~   85 (118)
T 3evi_A           10 GNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC----IQHYHDNCLPTIFVYKNGQI   85 (118)
T ss_dssp             GGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT----STTCCGGGCSEEEEEETTEE
T ss_pred             HHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh----HHHCCCCCCCEEEEEECCEE
Confidence            34677888776556799999999999999999999999999999999999999854    48999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHHCCcccCC
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAG  597 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~  597 (612)
                      +++++|+.+++|++|+.++||++|.++|+|+.+
T Consensus        86 v~~~~G~~~~gg~~~~~~~le~~L~~~g~i~~~  118 (118)
T 3evi_A           86 EAKFIGIIECGGINLKLEELEWKLAEVGAIQTD  118 (118)
T ss_dssp             EEEEESTTTTTCSSCCHHHHHHHHHTTTSCCCC
T ss_pred             EEEEeChhhhCCCCCCHHHHHHHHHHcCCcCCC
Confidence            999999999999999999999999999999753

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=2.5e-18  Score=156.98  Aligned_cols=109  Identities=25%  Similarity=0.480  Sum_probs=98.0

Q ss_pred             HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      ..+|.+.|.+..++.+|||+||++||++|+.|.+.|++||++|++++|++|+++...    .+|.+.++||+++|++|+.
T Consensus        17 ~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~----~~~~i~~~Pt~~~~~~G~~   92 (135)
T 2dbc_A           17 GNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI----EHYHDNCLPTIFVYKNGQI   92 (135)
T ss_dssp             HHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC----SSCCSSCCSEEEEESSSSC
T ss_pred             HHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc----ccCCCCCCCEEEEEECCEE
Confidence            345777777655557999999999999999999999999999999999999998653    7899999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHHCCcccCC
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAG  597 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~  597 (612)
                      +.+++|+.+.+|.+++.++|+++|.++|+|+.+
T Consensus        93 v~~~~G~~~~~~~~~~~~~l~~~l~~~~~i~~~  125 (135)
T 2dbc_A           93 EGKFIGIIECGGINLKLEELEWKLSEVGAIQSD  125 (135)
T ss_dssp             SEEEESTTTTTCTTCCHHHHHHHHHHHTSSCCC
T ss_pred             EEEEEeEEeeCCCcCCHHHHHHHHHHcCCcccc
Confidence            999999988888889999999999999998754

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.74  E-value=1.5e-17  Score=145.42  Aligned_cols=95  Identities=15%  Similarity=0.282  Sum_probs=83.1

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      +|.+.+.+. ++.+|||+|||+||++|+.|.+.|+++|+.|+++.|++||++..+ .++.+|.+.++||+++|++|+.++
T Consensus        10 ~f~~~l~~~-~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~V~~~PT~~~~~~G~~v~   87 (105)
T 3zzx_A           10 DFTKQLNEA-GNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECE-DIAQDNQIACMPTFLFMKNGQKLD   87 (105)
T ss_dssp             HHHHHHHHT-TTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCH-HHHHHTTCCBSSEEEEEETTEEEE
T ss_pred             HHHHHHHhc-CCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCH-HHHHHcCCCeecEEEEEECCEEEE
Confidence            344445432 456899999999999999999999999999999999999999887 789999999999999999999999


Q ss_pred             EEEeccccccCCCCHHHHHHHHHHC
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +++|.        +.++|+.+|.+|
T Consensus        88 ~~~G~--------~~~~l~~~i~k~  104 (105)
T 3zzx_A           88 SLSGA--------NYDKLLELVEKN  104 (105)
T ss_dssp             EEESC--------CHHHHHHHHHHH
T ss_pred             EEeCc--------CHHHHHHHHHhc
Confidence            99874        347899999876

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.73  E-value=8.1e-18  Score=156.15  Aligned_cols=95  Identities=11%  Similarity=0.096  Sum_probs=78.6

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      +|.++|.++ .+.+|||+|||+||++|++|+|+|++||++|++ ++|++||+|+.+ +++.+|.++.+|||++||+|+.+
T Consensus        31 ~f~~~v~~~-~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~-e~a~~y~V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           31 AVDQAIVNE-DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVP-DFNTMYELYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             HHHHHHHHC-SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC-TTTTTTTCCSSEEEEEEETTEEE
T ss_pred             HHHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCH-HHHHHcCCCCCCEEEEEECCEEE
Confidence            455566432 355899999999999999999999999999975 999999999987 88899999999999999999998


Q ss_pred             --e-------EEEeccccccCCCCHHHHHHHHH
Q psy12938        566 --G-------NFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       566 --~-------~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                        +       +++|+..      ..++|+.+|.
T Consensus       109 ~vd~Gtgd~~k~vGa~~------~k~~l~~~ie  135 (160)
T 2av4_A          109 MIDLGTGNNNKINWPMN------NKQEFIDIVE  135 (160)
T ss_dssp             EEECSSSCCSCBCSCCC------CHHHHHHHHH
T ss_pred             EEecCCCCcCeEEeecC------CHHHHHHHHH
Confidence              5       7777633      1255666654

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.71  E-value=3.2e-17  Score=149.54  Aligned_cols=95  Identities=14%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCC--hhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCE
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSL--PACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE  563 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~--~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~  563 (612)
                      .|.+.|.+  ...+|+|+||++||  ++|++|.|+|++||++|. .++|+|||+|..+ .++.+|.++++|||++||||+
T Consensus        24 ~F~~~v~~--~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~-~la~~ygV~siPTlilFkdG~  100 (137)
T 2qsi_A           24 TVDDFIAH--SGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAER-GLMARFGVAVCPSLAVVQPER  100 (137)
T ss_dssp             THHHHHHT--SSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHH-HHHHHHTCCSSSEEEEEECCE
T ss_pred             HHHHHHhc--CCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCH-HHHHHcCCccCCEEEEEECCE
Confidence            45556643  33489999999999  999999999999999995 6999999999887 899999999999999999999


Q ss_pred             EeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        564 VVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       564 ~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .+++++|+...       ++|+.+|.++
T Consensus       101 ~v~~~vG~~~k-------~~l~~~l~~~  121 (137)
T 2qsi_A          101 TLGVIAKIQDW-------SSYLAQIGAM  121 (137)
T ss_dssp             EEEEEESCCCH-------HHHHHHHHHH
T ss_pred             EEEEEeCCCCH-------HHHHHHHHHH
Confidence            99999999766       6777777643

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.69  E-value=1.3e-17  Score=152.80  Aligned_cols=100  Identities=14%  Similarity=0.138  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhhccCCCCceEEEEEeCCC--ChhhhhhHHHHHHHHhhcC-C-ceEEEecCCCchhchhhhCCCCCCcEE
Q psy12938        481 KQMYDRLFLSEIDSEPRHITVIAHLSSPS--LPACRALNSSLAELSRSHT-N-VKFVSVPLGCVGDHFSATFKTSGLPAM  556 (612)
Q Consensus       481 ~el~~~~~~~~V~~~~~~~~Vvvhfy~~~--~~~C~~m~~~l~~LA~~~~-~-vkF~ki~~~~~~d~~~~~~~i~~lPtl  556 (612)
                      .++....|.+.|.   ...+|+|.||++|  |++|++|.|+|++||++|+ . ++|+|||+|..+ .++.+|.|+++|||
T Consensus        20 ~~~t~~~F~~~v~---~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~-~lA~~ygV~sIPTl   95 (140)
T 2qgv_A           20 TPVSESRLDDWLT---QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSE-AIGDRFGAFRFPAT   95 (140)
T ss_dssp             EECCHHHHHHHHH---TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHH-HHHHHHTCCSSSEE
T ss_pred             ccCCHHHHHHHHh---CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCH-HHHHHcCCccCCEE
Confidence            3444556766674   2346889999999  9999999999999999996 5 999999999887 89999999999999


Q ss_pred             EEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        557 LAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       557 lvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      ++||||+.+++++|+...       ++|+.+|.++
T Consensus        96 ilFk~G~~v~~~~G~~~k-------~~l~~~i~~~  123 (140)
T 2qgv_A           96 LVFTGGNYRGVLNGIHPW-------AELINLMRGL  123 (140)
T ss_dssp             EEEETTEEEEEEESCCCH-------HHHHHHHHHH
T ss_pred             EEEECCEEEEEEecCCCH-------HHHHHHHHHH
Confidence            999999999999998666       7788887654

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.65  E-value=3e-16  Score=149.11  Aligned_cols=136  Identities=60%  Similarity=0.901  Sum_probs=117.4

Q ss_pred             cccCCCccccccCCCCccccccCCCCCCCCcccCCcccccccCcccccccCCCCcccccccCCCccccCCCCCCcccccc
Q psy12938        181 YYEDGNFWMEVEGLPDRDLELADNSDEGDVPVKSNTKVKFSMAPIKCTYSESLKPVLGHMVGSNATLDSYSGHSTTLEDS  260 (612)
Q Consensus       181 ~~~~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~  260 (612)
                      .|++++.+.+++|++..+.            .+...+++|+.+|+.                                  
T Consensus        11 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~~~----------------------------------   44 (170)
T 3egg_C           11 PYEPESGCVEIPGLSEEED------------PAPSRKIHFSTAPIQ----------------------------------   44 (170)
T ss_dssp             CCCCCCCEEEECCCCCCSS------------CCTTCCCEECCSCEE----------------------------------
T ss_pred             ccCCCCcceecCCCCcccc------------CCCCceEecCCCccc----------------------------------
Confidence            4777889999999997653            233557777777776                                  


Q ss_pred             ccccCCCCCcccCCccccccccccccccCCCCCCccchhhHHHHhhhccceeEEEEEEeeCCCCcceEEEeccCCCCCCC
Q psy12938        261 YARDLGSTNTLEDSKYVYSTFSMNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGL  340 (612)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~  340 (612)
                                      ++.+++.++|.+.+.+.||+..++.|..++.....++++|.|.|+..||||+|.|++.+.+...
T Consensus        45 ----------------v~~~~s~~~y~~~~~~ldp~~~~~~~~~e~~~~~~~~~~v~l~k~~~glG~~i~g~~~g~~~~~  108 (170)
T 3egg_C           45 ----------------VFSTYSNEDYDRRNEDVDPMAASAEYELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGL  108 (170)
T ss_dssp             ----------------EEEECCTTTSCCCCTTCCHHHHHHHHHHHHHHTTSEEEEEEEECBTTBSSEEEEEECSSSSCCS
T ss_pred             ----------------ccccCChhHhcccccCCCcccchhhcccccccCCceEEEEEEEeCCCeEeEEEEecccCCcccc
Confidence                            6777788899999999999999899999999999999999999999999999999666666655


Q ss_pred             CccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        341 EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       341 ~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+.||||.+|.+||+|+++|+|++||    |||.++.+++|.
T Consensus       109 ~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~  150 (170)
T 3egg_C          109 EKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQS  150 (170)
T ss_dssp             SSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHH
T ss_pred             CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            67899999999999999999999999    999999998773

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.61  E-value=1e-15  Score=132.52  Aligned_cols=87  Identities=11%  Similarity=0.166  Sum_probs=71.0

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      .+.+|+|+||++||++|+.|.+.|++++++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|...   
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~---   92 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQ-EIAGRYAVFTGPTVLLFYNGKEILRESRFIS---   92 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC----------CCCCEEEEEETTEEEEEEESSCC---
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCH-HHHHhcCCCCCCEEEEEeCCeEEEEEeCCcC---
Confidence            456899999999999999999999999999999999999999776 7889999999999999999999999988744   


Q ss_pred             CCCCHHHHHHHHHHC
Q psy12938        577 EGYFVEDVEAFLVEA  591 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~  591 (612)
                          .++|+.+|.++
T Consensus        93 ----~~~l~~~l~~~  103 (105)
T 4euy_A           93 ----LENLERTIQLF  103 (105)
T ss_dssp             ----HHHHHHHHHTT
T ss_pred             ----HHHHHHHHHHh
Confidence                48899888753

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.60  E-value=2.9e-14  Score=164.51  Aligned_cols=97  Identities=29%  Similarity=0.437  Sum_probs=80.8

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCc------------h--------------------hhH
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVN------------S--------------------EVA   48 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~------------~--------------------~i~   48 (612)
                      +||+|++|||+++.+++|.+++.+|+.++..|.|+|.|......            .                    .|.
T Consensus       110 ~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~~~~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~gv~V~  189 (721)
T 2xkx_A          110 VNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVT  189 (721)
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHhhccccccceEEEecccccccceeeeeeeecCCCceeeccCCCccccCCCCceEEE
Confidence            59999999999999999999999999999999999988642210            0                    011


Q ss_pred             Hh-------hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QL-------IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i-------~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      .+       ..|+|++||+|++|||+++.+++|.+++.+|+.++..|.|+|.|...
T Consensus       190 ~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~V~R~g~  245 (721)
T 2xkx_A          190 KIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN  245 (721)
T ss_pred             EeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            11       23459999999999999999999999999999999999999988543

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.55  E-value=2.3e-14  Score=124.15  Aligned_cols=85  Identities=12%  Similarity=0.180  Sum_probs=75.6

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      ++.+++|+||++||++|+.+.+.|++++++|++++|++++.+..+ .+..+|.+.++||+++|++|+.+.++.|..    
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~----   94 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQ-GTAATNNISATPTFQFFRNKVRIDQYQGAD----   94 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEESSC----
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCH-HHHHhcCCCcccEEEEEECCeEEEEEeCCC----
Confidence            355899999999999999999999999999999999999999776 788999999999999999999999888752    


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                          .++|+.+|.+
T Consensus        95 ----~~~l~~~l~~  104 (107)
T 1gh2_A           95 ----AVGLEEKIKQ  104 (107)
T ss_dssp             ----HHHHHHHHHH
T ss_pred             ----HHHHHHHHHH
Confidence                2458888765

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.54  E-value=1.2e-14  Score=128.60  Aligned_cols=84  Identities=20%  Similarity=0.326  Sum_probs=76.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      +.+|+|+||++||++|+.+.+.|++|+++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|. .    
T Consensus        31 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~----  104 (116)
T 3qfa_C           31 DKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQ-DVASECEVKSMPTFQFFKKGQKVGEFSGA-N----  104 (116)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTH-HHHHHTTCCSSSEEEEESSSSEEEEEESC-C----
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHcCCccccEEEEEeCCeEEEEEcCC-C----
Confidence            45899999999999999999999999999999999999999876 78899999999999999999999988876 3    


Q ss_pred             CCCHHHHHHHHHH
Q psy12938        578 GYFVEDVEAFLVE  590 (612)
Q Consensus       578 ~~~~~~lE~~L~~  590 (612)
                         .++|+.+|.+
T Consensus       105 ---~~~l~~~l~~  114 (116)
T 3qfa_C          105 ---KEKLEATINE  114 (116)
T ss_dssp             ---HHHHHHHHHH
T ss_pred             ---HHHHHHHHHH
Confidence               4889888875

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.54  E-value=4.5e-14  Score=123.27  Aligned_cols=85  Identities=13%  Similarity=0.295  Sum_probs=77.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      ..+|+|+||++||++|+.|.+.|++++++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|.      
T Consensus        24 ~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~------   96 (109)
T 3f3q_A           24 DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG-DVAQKNEVSAMPTLLLFKNGKEVAKVVGA------   96 (109)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESS------
T ss_pred             CCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHcCCCccCEEEEEECCEEEEEEeCC------
Confidence            55899999999999999999999999999999999999999876 78899999999999999999999998876      


Q ss_pred             CCCHHHHHHHHHHC
Q psy12938        578 GYFVEDVEAFLVEA  591 (612)
Q Consensus       578 ~~~~~~lE~~L~~~  591 (612)
                        ..+.|+.+|.++
T Consensus        97 --~~~~l~~~i~~~  108 (109)
T 3f3q_A           97 --NPAAIKQAIAAN  108 (109)
T ss_dssp             --CHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHhh
Confidence              237888888753

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.54  E-value=2.9e-14  Score=130.01  Aligned_cols=94  Identities=22%  Similarity=0.385  Sum_probs=75.8

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      +.|...+.+  ... +||+||++||+.|+.+.+.|+.++++|+ +++|++|+.+..+ .+..+|.+.++||+++|++|+.
T Consensus        41 ~~~~~~~~~--~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~  116 (140)
T 1v98_A           41 KGFAQEVAG--APL-TLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP-GLAARYGVRSVPTLVLFRRGAP  116 (140)
T ss_dssp             --------C--CCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEE
T ss_pred             HHHHHHHHc--CCC-EEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCH-HHHHHCCCCccCEEEEEeCCcE
Confidence            345555543  233 9999999999999999999999999997 6999999999775 7889999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.++.|...       .++|+.+|.+
T Consensus       117 ~~~~~G~~~-------~~~l~~~i~~  135 (140)
T 1v98_A          117 VATWVGASP-------RRVLEERLRP  135 (140)
T ss_dssp             EEEEESCCC-------HHHHHHHHHH
T ss_pred             EEEEeCCCC-------HHHHHHHHHH
Confidence            999988643       4788888865

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.53  E-value=4.5e-14  Score=122.52  Aligned_cols=96  Identities=20%  Similarity=0.306  Sum_probs=81.9

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      +.|.+.+.+  ...+++|+||++||++|+.+.+.|++++++|++ ++|++++.+..+ .+..+|.+.++||+++|++|+.
T Consensus        12 ~~~~~~~~~--~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~   88 (111)
T 3gnj_A           12 NTFEQLIYD--EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEK-TLFQRFSLKGVPQILYFKDGEY   88 (111)
T ss_dssp             HHHHHHHTT--SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH-HHHHHTTCCSSCEEEEEETTEE
T ss_pred             HHHHHHHHh--cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcCh-hHHHhcCCCcCCEEEEEECCEE
Confidence            345555633  345899999999999999999999999999984 999999999876 7889999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +.++.|...       .++|+.+|.++
T Consensus        89 ~~~~~g~~~-------~~~l~~~l~~~  108 (111)
T 3gnj_A           89 KGKMAGDVE-------DDEVEQMIADV  108 (111)
T ss_dssp             EEEEESSCC-------HHHHHHHHHHH
T ss_pred             EEEEeccCC-------HHHHHHHHHHH
Confidence            999988643       48888888753

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.52  E-value=5.9e-14  Score=130.20  Aligned_cols=95  Identities=16%  Similarity=0.267  Sum_probs=79.6

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe-
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV-  565 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~-  565 (612)
                      |.+.+.. ....+|+|+||++||++|+.|.+.|++++++|++ ++|++|+.+..+ .++.+|.+.++||+++|++|+.+ 
T Consensus        14 ~~~~i~~-~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~v~   91 (149)
T 3gix_A           14 VDQAIKS-TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTA-VYTQYFDISYIPSTVFFFNGQHMK   91 (149)
T ss_dssp             HHHHHHH-CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCC-HHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             HHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCH-HHHHHcCCCccCeEEEEECCeEEE
Confidence            4444431 1456899999999999999999999999999987 999999999876 78899999999999999999999 


Q ss_pred             --------eEEEe-ccccccCCCCHHHHHHHHHHC
Q psy12938        566 --------GNFVR-LGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       566 --------~~~vg-~~~~~g~~~~~~~lE~~L~~~  591 (612)
                              .+++| +...       ++|+.+|.+.
T Consensus        92 ~~~g~~~~~~~~G~~~~~-------~~l~~~l~~~  119 (149)
T 3gix_A           92 VDYGSPDHTKFVGSFKTK-------QDFIDLIEVI  119 (149)
T ss_dssp             EECSSSCCSCEESCCSSH-------HHHHHHHHHH
T ss_pred             eecCCCCCCeEeeecCCH-------HHHHHHHHHH
Confidence                    88888 5433       6777776644

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.52  E-value=6.9e-14  Score=120.11  Aligned_cols=85  Identities=21%  Similarity=0.355  Sum_probs=77.3

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      ++.+++|+||++||+.|+.+.+.|++++++|+++.|++++.+..+ .+..+|.+.++||+++|++|+.+.++.|. .   
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-~---   93 (105)
T 3m9j_A           19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ-DVASESEVKSMPTFQFFKKGQKVGEFSGA-N---   93 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCH-HHHHHTTCCBSSEEEEEETTEEEEEEESS-C---
T ss_pred             CCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhH-HHHHHcCCCcCcEEEEEECCeEEEEEeCC-C---
Confidence            355899999999999999999999999999999999999999876 78899999999999999999999998876 3   


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                          .++|+.+|.+
T Consensus        94 ----~~~l~~~l~~  103 (105)
T 3m9j_A           94 ----KEKLEATINE  103 (105)
T ss_dssp             ----HHHHHHHHHH
T ss_pred             ----HHHHHHHHHH
Confidence                3888888875

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.51  E-value=4.1e-14  Score=123.76  Aligned_cols=87  Identities=15%  Similarity=0.256  Sum_probs=77.9

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      ...++|+||++||++|+.+.+.|++++++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|+...   
T Consensus        19 ~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~~~~---   94 (110)
T 2l6c_A           19 LSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARP-ELMKELGFERVPTLVFIRDGKVAKVFSGIMNP---   94 (110)
T ss_dssp             CSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCH-HHHHHTTCCSSCEEEEEESSSEEEEEESCCCH---
T ss_pred             CCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCH-HHHHHcCCcccCEEEEEECCEEEEEEcCCCCH---
Confidence            34799999999999999999999999999999999999998765 78899999999999999999999999987444   


Q ss_pred             CCCHHHHHHHHHHCC
Q psy12938        578 GYFVEDVEAFLVEAG  592 (612)
Q Consensus       578 ~~~~~~lE~~L~~~g  592 (612)
                          ++|+.+|.+++
T Consensus        95 ----~~l~~~~~~~~  105 (110)
T 2l6c_A           95 ----RELQALYASIH  105 (110)
T ss_dssp             ----HHHHHHHHTC-
T ss_pred             ----HHHHHHHHHHh
Confidence                88999987653

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.51  E-value=7.8e-14  Score=123.04  Aligned_cols=84  Identities=12%  Similarity=0.311  Sum_probs=76.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      +.+++|.||++||+.|+.+.+.|++++++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|..     
T Consensus        30 ~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-----  103 (114)
T 2oe3_A           30 NDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESP-DIAKECEVTAMPTFVLGKDGQLIGKIIGAN-----  103 (114)
T ss_dssp             CSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCH-HHHHHTTCCSBSEEEEEETTEEEEEEESSC-----
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHCCCCcccEEEEEeCCeEEEEEeCCC-----
Confidence            34899999999999999999999999999999999999999775 788999999999999999999999998863     


Q ss_pred             CCCHHHHHHHHHH
Q psy12938        578 GYFVEDVEAFLVE  590 (612)
Q Consensus       578 ~~~~~~lE~~L~~  590 (612)
                         .+.|+.+|.+
T Consensus       104 ---~~~l~~~l~~  113 (114)
T 2oe3_A          104 ---PTALEKGIKD  113 (114)
T ss_dssp             ---HHHHHHHHHT
T ss_pred             ---HHHHHHHHHh
Confidence               3788888864

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.50  E-value=9.3e-14  Score=121.16  Aligned_cols=95  Identities=16%  Similarity=0.294  Sum_probs=76.7

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhh--cCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRS--HTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~--~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      +|.+.+.+.....+++|+||++||++|+.+.+.|++++++  +++++|++++.+..+ .+..+|.+.++||+++|++|+.
T Consensus        10 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~   88 (112)
T 3d6i_A           10 QFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENS-EISELFEISAVPYFIIIHKGTI   88 (112)
T ss_dssp             HHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEE
T ss_pred             HHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCH-HHHHHcCCCcccEEEEEECCEE
Confidence            3444454323456899999999999999999999999999  788999999999776 7889999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.++.|..        .++|+.+|.+
T Consensus        89 ~~~~~G~~--------~~~l~~~l~~  106 (112)
T 3d6i_A           89 LKELSGAD--------PKEYVSLLED  106 (112)
T ss_dssp             EEEECSCC--------HHHHHHHHHH
T ss_pred             EEEecCCC--------HHHHHHHHHH
Confidence            99888762        2457777654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.49  E-value=1.5e-13  Score=128.32  Aligned_cols=86  Identities=10%  Similarity=0.300  Sum_probs=77.5

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      .+.+|||+||++||++|+.+.+.|++++++|+ .++|++||.+..+ .+..+|.+.++||+++|++|+.+.++.|...  
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~G~~~~~~~G~~~--  139 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHP-AVAGRHRIQGIPAFILFHKGRELARAAGARP--  139 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTST-HHHHHTTCCSSSEEEEEETTEEEEEEESCCC--
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccH-HHHHHcCCCcCCEEEEEeCCeEEEEecCCCC--
Confidence            45589999999999999999999999999996 7999999999776 7889999999999999999999999988643  


Q ss_pred             cCCCCHHHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFLVE  590 (612)
Q Consensus       576 g~~~~~~~lE~~L~~  590 (612)
                           .++|+.||.+
T Consensus       140 -----~~~l~~~l~~  149 (155)
T 2ppt_A          140 -----ASELVGFVRG  149 (155)
T ss_dssp             -----HHHHHHHHHH
T ss_pred             -----HHHHHHHHHH
Confidence                 4889988876

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.49  E-value=1.4e-13  Score=123.65  Aligned_cols=85  Identities=15%  Similarity=0.300  Sum_probs=75.5

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      ...+++|+||++||++|+.+.+.|++|+++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|.     
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~i~~~G~~~~~~~G~-----  109 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNS-EIVSKCRVLQLPTFIIARSGKMLGHVIGA-----  109 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESS-----
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHcCCCcccEEEEEeCCeEEEEEeCC-----
Confidence            345899999999999999999999999999999999999999776 78899999999999999999999988774     


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                         +.++|+.+|.+
T Consensus       110 ---~~~~l~~~l~~  120 (125)
T 1r26_A          110 ---NPGMLRQKLRD  120 (125)
T ss_dssp             ---CHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHH
Confidence               23678777764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.48  E-value=2.1e-13  Score=117.08  Aligned_cols=86  Identities=13%  Similarity=0.291  Sum_probs=77.3

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      +..+++|+||++||+.|+.+.+.|++++++|++ ++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|...  
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~--   94 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP-STAAKYEVMSIPTLIVFKDGQPVDKVVGFQP--   94 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHTTCCSBSEEEEEETTEEEEEEESCCC--
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCH-HHHHhCCCcccCEEEEEeCCeEEEEEeCCCC--
Confidence            345899999999999999999999999999986 999999999876 7889999999999999999999999888644  


Q ss_pred             cCCCCHHHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFLVE  590 (612)
Q Consensus       576 g~~~~~~~lE~~L~~  590 (612)
                           .++|+.+|.+
T Consensus        95 -----~~~l~~~l~~  104 (106)
T 3die_A           95 -----KENLAEVLDK  104 (106)
T ss_dssp             -----HHHHHHHHHT
T ss_pred             -----HHHHHHHHHH
Confidence                 3889888865

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.48  E-value=1.5e-13  Score=123.05  Aligned_cols=85  Identities=14%  Similarity=0.340  Sum_probs=76.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      ..+++|+||++||++|+.+.+.|++++++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|+      
T Consensus        38 ~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~------  110 (124)
T 1xfl_A           38 KTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELK-SVASDWAIQAMPTFMFLKEGKILDKVVGA------  110 (124)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEESC------
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCH-HHHHHcCCCccCEEEEEECCEEEEEEeCC------
Confidence            45899999999999999999999999999999999999999776 78899999999999999999999988774      


Q ss_pred             CCCHHHHHHHHHHC
Q psy12938        578 GYFVEDVEAFLVEA  591 (612)
Q Consensus       578 ~~~~~~lE~~L~~~  591 (612)
                        +.++|+.+|.++
T Consensus       111 --~~~~l~~~l~~~  122 (124)
T 1xfl_A          111 --KKDELQSTIAKH  122 (124)
T ss_dssp             --CHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHh
Confidence              247788888653

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.47  E-value=3e-13  Score=118.25  Aligned_cols=84  Identities=15%  Similarity=0.301  Sum_probs=76.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      +.+++|+||++||+.|+.+.+.|++++++|+++.|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|. .    
T Consensus        26 ~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~----   99 (112)
T 1syr_A           26 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS-EVTEKENITSMPTFKVYKNGSSVDTLLGA-N----   99 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTH-HHHHHTTCCSSSEEEEEETTEEEEEEESC-C----
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHcCCCcccEEEEEECCcEEEEEeCC-C----
Confidence            44899999999999999999999999999999999999999775 68899999999999999999999988776 3    


Q ss_pred             CCCHHHHHHHHHH
Q psy12938        578 GYFVEDVEAFLVE  590 (612)
Q Consensus       578 ~~~~~~lE~~L~~  590 (612)
                         .++|+.+|.+
T Consensus       100 ---~~~l~~~l~~  109 (112)
T 1syr_A          100 ---DSALKQLIEK  109 (112)
T ss_dssp             ---HHHHHHHHHT
T ss_pred             ---HHHHHHHHHH
Confidence               3888888865

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.47  E-value=2.2e-13  Score=119.22  Aligned_cols=93  Identities=19%  Similarity=0.313  Sum_probs=80.4

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      .|.+.+    .+.+++|+||++||++|+.+.+.|.+++++|+ .++|++|+.+..+ .+..+|.+.++||+++|++|+.+
T Consensus        10 ~~~~~~----~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~   84 (112)
T 2voc_A           10 SFSAET----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQ-ETAGKYGVMSIPTLLVLKDGEVV   84 (112)
T ss_dssp             THHHHH----SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCC-SHHHHTTCCSBSEEEEEETTEEE
T ss_pred             HHHHHh----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCH-HHHHHcCCCcccEEEEEeCCEEE
Confidence            344455    34589999999999999999999999999996 6999999999775 78899999999999999999999


Q ss_pred             eEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        566 GNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       566 ~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .++.|....       ++|+.+|.++
T Consensus        85 ~~~~G~~~~-------~~l~~~l~~~  103 (112)
T 2voc_A           85 ETSVGFKPK-------EALQELVNKH  103 (112)
T ss_dssp             EEEESCCCH-------HHHHHHHHTT
T ss_pred             EEEeCCCCH-------HHHHHHHHHH
Confidence            999887444       8899998754

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.47  E-value=2.1e-13  Score=120.76  Aligned_cols=85  Identities=19%  Similarity=0.320  Sum_probs=76.6

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      +.+++|+||++||+.|+.+.+.|++++++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|..     
T Consensus        34 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~-----  107 (122)
T 2vlu_A           34 KKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELK-PIAEQFSVEAMPTFLFMKEGDVKDRVVGAI-----  107 (122)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESSC-----
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCH-HHHHHcCCCcccEEEEEeCCEEEEEEeCcC-----
Confidence            44799999999999999999999999999999999999999776 788999999999999999999999888763     


Q ss_pred             CCCHHHHHHHHHHC
Q psy12938        578 GYFVEDVEAFLVEA  591 (612)
Q Consensus       578 ~~~~~~lE~~L~~~  591 (612)
                         .++|+.+|.++
T Consensus       108 ---~~~l~~~l~~~  118 (122)
T 2vlu_A          108 ---KEELTAKVGLH  118 (122)
T ss_dssp             ---HHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHH
Confidence               37888888753

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.47  E-value=3.8e-13  Score=116.15  Aligned_cols=93  Identities=14%  Similarity=0.265  Sum_probs=79.3

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |...+.+  .+.+++|+||++||+.|+.+.+.|++++++|+ .++|++|+.+..+ .+..+|.+.++||+++|++|+.+.
T Consensus        12 f~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~   88 (108)
T 2trx_A           12 FDTDVLK--ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEVAA   88 (108)
T ss_dssp             HHHHTTT--CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCT-THHHHTTCCSSSEEEEEETTEEEE
T ss_pred             HHHHHHh--cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCH-HHHHHcCCcccCEEEEEeCCEEEE
Confidence            4444432  45589999999999999999999999999996 6999999998765 788999999999999999999999


Q ss_pred             EEEeccccccCCCCHHHHHHHHHH
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++.|..       +.++|+.+|.+
T Consensus        89 ~~~G~~-------~~~~l~~~l~~  105 (108)
T 2trx_A           89 TKVGAL-------SKGQLKEFLDA  105 (108)
T ss_dssp             EEESCC-------CHHHHHHHHHH
T ss_pred             EEecCC-------CHHHHHHHHHH
Confidence            888763       34788888865

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.46  E-value=4.8e-13  Score=115.01  Aligned_cols=94  Identities=15%  Similarity=0.267  Sum_probs=80.3

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |.+.+.+  ...+++|+||++||+.|+.+.+.|++++++|+ .++|++|+.+..+ .+..+|.+.++||+++|++|+.+.
T Consensus        12 ~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~   88 (107)
T 2i4a_A           12 FDQDVLK--ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNP-ETPNAYQVRSIPTLMLVRDGKVID   88 (107)
T ss_dssp             HHHHTTT--CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCC-HHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             hhHHHHh--CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCH-HHHHhcCCCccCEEEEEeCCEEEE
Confidence            4444432  45689999999999999999999999999997 6999999998765 688999999999999999999999


Q ss_pred             EEEeccccccCCCCHHHHHHHHHHC
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      ++.|..       +.+.|..+|.++
T Consensus        89 ~~~G~~-------~~~~l~~~l~~~  106 (107)
T 2i4a_A           89 KKVGAL-------PKSQLKAWVESA  106 (107)
T ss_dssp             EEESCC-------CHHHHHHHHHHT
T ss_pred             EecCCC-------CHHHHHHHHHhc
Confidence            888763       348899998764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.46  E-value=1.9e-13  Score=119.12  Aligned_cols=85  Identities=11%  Similarity=0.149  Sum_probs=75.5

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC-CchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG-CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~-~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      ...+++|+||++||++|+.+.+.|.+++++|+++.|++|+.+ ..+ .+..+|.+.++||+++|++|+.+.++.|..   
T Consensus        23 ~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~---   98 (111)
T 2pu9_C           23 GDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENK-TLAKELGIRVVPTFKILKENSVVGEVTGAK---   98 (111)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH-HHHHHHCCSBSSEEEEESSSSEEEEEESSC---
T ss_pred             CCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchH-HHHHHcCCCeeeEEEEEeCCcEEEEEcCCC---
Confidence            355899999999999999999999999999999999999998 554 788999999999999999999999888762   


Q ss_pred             cCCCCHHHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFLVE  590 (612)
Q Consensus       576 g~~~~~~~lE~~L~~  590 (612)
                           .++|+.+|.+
T Consensus        99 -----~~~l~~~l~~  108 (111)
T 2pu9_C           99 -----YDKLLEAIQA  108 (111)
T ss_dssp             -----HHHHHHHHHH
T ss_pred             -----HHHHHHHHHH
Confidence                 3778888865

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.46  E-value=5.1e-13  Score=118.31  Aligned_cols=95  Identities=21%  Similarity=0.390  Sum_probs=80.5

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      ++|.+.+.+  ...+++|.||++||+.|+.+.+.|.+++++|. .++|++|+.+..+ .+..+|.+.++||+++|++|+.
T Consensus        21 ~~f~~~v~~--~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~   97 (119)
T 1w4v_A           21 PDFQDRVVN--SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT-DLAIEYEVSAVPTVLAMKNGDV   97 (119)
T ss_dssp             HHHHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTH-HHHHHTTCCSSSEEEEEETTEE
T ss_pred             hhHHHHHHc--CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCH-HHHHHcCCCcccEEEEEeCCcE
Confidence            345555544  34589999999999999999999999999984 6999999999775 6889999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.++.|..       +.+.|+.+|.+
T Consensus        98 ~~~~~G~~-------~~~~l~~~l~~  116 (119)
T 1w4v_A           98 VDKFVGIK-------DEDQLEAFLKK  116 (119)
T ss_dssp             EEEEESCC-------CHHHHHHHHHH
T ss_pred             EEEEcCCC-------CHHHHHHHHHH
Confidence            99888763       34788888865

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.46  E-value=2.5e-13  Score=124.10  Aligned_cols=95  Identities=14%  Similarity=0.223  Sum_probs=80.3

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      ..|.+.+.+  ...+++|.||++||+.|+.|.+.|.+|+++|+. ++|++|+.+..+ .+..+|.+.++||+++|++|+.
T Consensus        14 ~~f~~~~~~--~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~   90 (140)
T 3hz4_A           14 MTWSQQVED--SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNP-WTAEKYGVQGTPTFKFFCHGRP   90 (140)
T ss_dssp             HHHHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCH-HHHHHHTCCEESEEEEEETTEE
T ss_pred             HhHHHHHHh--CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCH-hHHHHCCCCcCCEEEEEeCCcE
Confidence            345545544  355899999999999999999999999999986 999999999876 7889999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.++.|...       .+.|+.+|.+
T Consensus        91 ~~~~~G~~~-------~~~l~~~l~~  109 (140)
T 3hz4_A           91 VWEQVGQIY-------PSILKNAVRD  109 (140)
T ss_dssp             EEEEESSCC-------HHHHHHHHHH
T ss_pred             EEEEcCCCC-------HHHHHHHHHH
Confidence            999988643       3677777654

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.46  E-value=3.9e-13  Score=117.05  Aligned_cols=93  Identities=17%  Similarity=0.288  Sum_probs=79.1

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |.+.+.+  .+.+++|+||++||+.|+.+.+.|.+++++|+ .++|+.++.+..+ .+..+|.+.++||+++|++|+.+.
T Consensus        15 ~~~~~~~--~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~   91 (112)
T 1t00_A           15 FEQDVLK--NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP-GTAAKYGVMSIPTLNVYQGGEVAK   91 (112)
T ss_dssp             HHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             HHHHHhh--CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCH-HHHHhCCCCcccEEEEEeCCEEEE
Confidence            4444443  35589999999999999999999999999994 6999999999775 788999999999999999999999


Q ss_pred             EEEeccccccCCCCHHHHHHHHHH
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++.|...       .++|+.+|.+
T Consensus        92 ~~~G~~~-------~~~l~~~l~~  108 (112)
T 1t00_A           92 TIVGAKP-------KAAIVRDLED  108 (112)
T ss_dssp             EEESCCC-------HHHHHHHTHH
T ss_pred             EEeCCCC-------HHHHHHHHHH
Confidence            9988643       3778888765

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.45  E-value=1.5e-13  Score=124.89  Aligned_cols=84  Identities=18%  Similarity=0.144  Sum_probs=74.6

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecC---------CCchhchhhhCCCCCCcEEEEEECCEEeeEEEe
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPL---------GCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVR  570 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~---------~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg  570 (612)
                      +|+|+||++||++|+.+.+.|.+++++|+ ++|++|+.         +..+ .+..+|.+.++||+++|++|+.+.+++|
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~~vd~~~~~~~~~~d~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~~~G  110 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIVMFIWGSLIGERELSAAR-LEMNKAGVEGTPTLVFYKEGRIVDKLVG  110 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEEEEEECTTCCHHHHHHHH-HHHHHHTCCSSSEEEEEETTEEEEEEES
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEEEEECCCchhhhhhhhhH-HHHHHcCCceeCeEEEEcCCEEEEEEeC
Confidence            79999999999999999999999999998 99999998         6554 6778999999999999999999999999


Q ss_pred             ccccccCCCCHHHHHHHHHHCC
Q psy12938        571 LGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       571 ~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      ....       +.++.++.++.
T Consensus       111 ~~~~-------~~~~~~i~~~~  125 (135)
T 3emx_A          111 ATPW-------SLKVEKAREIY  125 (135)
T ss_dssp             CCCH-------HHHHHHHHHHC
T ss_pred             CCCH-------HHHHHHHHHHh
Confidence            8555       67777776543

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.45  E-value=5.3e-13  Score=114.16  Aligned_cols=85  Identities=13%  Similarity=0.284  Sum_probs=76.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      .+.+++|+||++||+.|+.+.+.|.+++++|++++|++++.+..+ .+..+|.+.++||+++|++|+.+.++.|.     
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-----   91 (104)
T 2vim_A           18 KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNE-EAAAKYSVTAMPTFVFIKDGKEVDRFSGA-----   91 (104)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESS-----
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCH-HHHHHcCCccccEEEEEeCCcEEEEEeCC-----
Confidence            455899999999999999999999999999999999999999776 78899999999999999999999988774     


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                         +.++|+.+|.+
T Consensus        92 ---~~~~l~~~l~~  102 (104)
T 2vim_A           92 ---NETKLRETITR  102 (104)
T ss_dssp             ---CHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHh
Confidence               23778888865

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.45  E-value=4.5e-13  Score=120.69  Aligned_cols=86  Identities=13%  Similarity=0.230  Sum_probs=76.6

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      ...+++|.||++||+.|+.+.+.|++++++|+ .++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|...  
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~--  115 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEVAATKVGALS--  115 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCC-TTSGGGTCCSSSEEEEEETTEEEEEEESCCC--
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHcCCCccCEEEEEeCCEEEEEEcCCCC--
Confidence            45689999999999999999999999999997 6999999998765 6789999999999999999999999887633  


Q ss_pred             cCCCCHHHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFLVE  590 (612)
Q Consensus       576 g~~~~~~~lE~~L~~  590 (612)
                           .++|+.+|.+
T Consensus       116 -----~~~l~~~l~~  125 (128)
T 2o8v_B          116 -----KGQLKEFLDA  125 (128)
T ss_dssp             -----HHHHHHHHHH
T ss_pred             -----HHHHHHHHHH
Confidence                 4788888865

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.45  E-value=4.6e-13  Score=118.73  Aligned_cols=87  Identities=17%  Similarity=0.290  Sum_probs=78.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEEC----CEEeeEEEeccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG----GEVVGNFVRLGE  573 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~----G~~~~~~vg~~~  573 (612)
                      ..+|+|+||++||++|+.+.+.|++++++|+.++|++|+.+..+ .+..+|.+.++||+++|++    |+.+.+++|+. 
T Consensus        23 ~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~-~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~~G~~-  100 (118)
T 2f51_A           23 PGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNG-NAADAYGVSSIPALFFVKKEGNEIKTLDQFVGAD-  100 (118)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH-HHHHHTTCCSSSEEEEEEEETTEEEEEEEEESCC-
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCH-HHHHhcCCCCCCEEEEEeCCCCcceEEEeecCCC-
Confidence            45899999999999999999999999999988999999999776 7889999999999999999    99999999873 


Q ss_pred             cccCCCCHHHHHHHHHHCCc
Q psy12938        574 ELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~~~g~  593 (612)
                             .++|+.++.++..
T Consensus       101 -------~~~l~~~~~~~~~  113 (118)
T 2f51_A          101 -------VSRIKADIEKFKH  113 (118)
T ss_dssp             -------HHHHHHHHHHHC-
T ss_pred             -------HHHHHHHHHHhhh
Confidence                   3569998887754

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.45  E-value=7.9e-13  Score=122.69  Aligned_cols=85  Identities=19%  Similarity=0.384  Sum_probs=76.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      ..++||+||++||++|+.|.+.|++|+++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|+      
T Consensus        32 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~------  104 (153)
T 2wz9_A           32 KSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVP-EVSEKYEISSVPTFLFFKNSQKIDRLDGA------  104 (153)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEESS------
T ss_pred             CCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCH-HHHHHcCCCCCCEEEEEECCEEEEEEeCC------
Confidence            45899999999999999999999999999999999999999776 78899999999999999999999988875      


Q ss_pred             CCCHHHHHHHHHHC
Q psy12938        578 GYFVEDVEAFLVEA  591 (612)
Q Consensus       578 ~~~~~~lE~~L~~~  591 (612)
                        ..++|+.+|.++
T Consensus       105 --~~~~l~~~i~~~  116 (153)
T 2wz9_A          105 --HAPELTKKVQRH  116 (153)
T ss_dssp             --CHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHH
Confidence              236788888765

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.45  E-value=3.3e-13  Score=117.35  Aligned_cols=85  Identities=15%  Similarity=0.360  Sum_probs=75.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      ..+++|+||++||++|+.+.+.|++++++|+ +++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|. .   
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~---   98 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA-AVAEAAGITAMPTFHVYKDGVKADDLVGA-S---   98 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTH-HHHHHHTCCBSSEEEEEETTEEEEEEESC-C---
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchH-HHHHHcCCCcccEEEEEECCeEEEEEcCC-C---
Confidence            3479999999999999999999999999998 8999999999775 78899999999999999999999988775 3   


Q ss_pred             CCCCHHHHHHHHHHC
Q psy12938        577 EGYFVEDVEAFLVEA  591 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~  591 (612)
                          .++|+.+|.++
T Consensus        99 ----~~~l~~~l~~~  109 (112)
T 1ep7_A           99 ----QDKLKALVAKH  109 (112)
T ss_dssp             ----HHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHH
Confidence                37788888653

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.45  E-value=1.7e-13  Score=122.97  Aligned_cols=87  Identities=11%  Similarity=0.227  Sum_probs=77.7

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      ++.+|+|+||++||++|+.+.+.|++++++|+ +++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|..   
T Consensus        41 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~---  116 (128)
T 3ul3_B           41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE-SLARKFSVKSLPTIILLKNKTMLARKDHFV---  116 (128)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCH-HHHHHTTCCSSSEEEEEETTEEEEEESSCC---
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHcCCCCcCEEEEEECCEEEEEecCCC---
Confidence            45689999999999999999999999999996 6999999999776 788999999999999999999999887763   


Q ss_pred             cCCCCHHHHHHHHHHC
Q psy12938        576 GEGYFVEDVEAFLVEA  591 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~  591 (612)
                          +.++|+.+|.++
T Consensus       117 ----~~~~l~~~l~~~  128 (128)
T 3ul3_B          117 ----SSNDLIALIKKH  128 (128)
T ss_dssp             ----CHHHHHHHHTTC
T ss_pred             ----CHHHHHHHHHhC
Confidence                448999998654

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.44  E-value=4.3e-13  Score=118.07  Aligned_cols=84  Identities=21%  Similarity=0.402  Sum_probs=75.1

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      ++.+++|+||++||++|+.+.+.|++++++| +++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|.     
T Consensus        32 ~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-----  104 (117)
T 2xc2_A           32 KNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFVKVDVDKLE-ETARKYNISAMPTFIAIKNGEKVGDVVGA-----  104 (117)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEESS-----
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEEEEECCccH-HHHHHcCCCccceEEEEeCCcEEEEEeCC-----
Confidence            3458999999999999999999999999999 9999999999776 78899999999999999999999988874     


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                         +.++|+.+|.+
T Consensus       105 ---~~~~l~~~l~~  115 (117)
T 2xc2_A          105 ---SIAKVEDMIKK  115 (117)
T ss_dssp             ---CHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHH
Confidence               23778888865

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.44  E-value=2.4e-13  Score=123.50  Aligned_cols=85  Identities=19%  Similarity=0.307  Sum_probs=75.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      +.+|+|+||++||++|+.+.+.|++++++|+++.|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|. .    
T Consensus        46 ~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~----  119 (139)
T 3d22_A           46 GKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELS-DFSASWEIKATPTFFFLRDGQQVDKLVGA-N----  119 (139)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSH-HHHHHTTCCEESEEEEEETTEEEEEEESC-C----
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccH-HHHHHcCCCcccEEEEEcCCeEEEEEeCC-C----
Confidence            34799999999999999999999999999999999999999876 78899999999999999999999988876 2    


Q ss_pred             CCCHHHHHHHHHHC
Q psy12938        578 GYFVEDVEAFLVEA  591 (612)
Q Consensus       578 ~~~~~~lE~~L~~~  591 (612)
                         .++|+.+|.++
T Consensus       120 ---~~~l~~~l~~~  130 (139)
T 3d22_A          120 ---KPELHKKITAI  130 (139)
T ss_dssp             ---HHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHH
Confidence               36788877653

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.44  E-value=7.8e-13  Score=113.50  Aligned_cols=85  Identities=18%  Similarity=0.296  Sum_probs=75.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      +.+++|+||++||+.|+.+.+.|++++++| +++.|++++.+..+ .+..+|.+.++||+++|++|+.+.++.|.     
T Consensus        20 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~-----   93 (106)
T 1xwb_A           20 GKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE-DIAMEYNISSMPTFVFLKNGVKVEEFAGA-----   93 (106)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESC-----
T ss_pred             CCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchH-HHHHHcCCCcccEEEEEcCCcEEEEEcCC-----
Confidence            458999999999999999999999999999 78999999999776 78899999999999999999999988763     


Q ss_pred             CCCCHHHHHHHHHHC
Q psy12938        577 EGYFVEDVEAFLVEA  591 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~  591 (612)
                         +.++|+.+|.++
T Consensus        94 ---~~~~l~~~i~~~  105 (106)
T 1xwb_A           94 ---NAKRLEDVIKAN  105 (106)
T ss_dssp             ---CHHHHHHHHHHT
T ss_pred             ---CHHHHHHHHHHh
Confidence               237788888753

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.44  E-value=6.4e-13  Score=114.47  Aligned_cols=86  Identities=10%  Similarity=0.203  Sum_probs=77.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      +.+++|+||++||+.|+.+.+.|..++++|+ .+.|+.++.+..+ .+..+|.+.++||+++|++|+.+.++.|...   
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~---   96 (109)
T 3tco_A           21 NKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ-KIADKYSVLNIPTTLIFVNGQLVDSLVGAVD---   96 (109)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESCCC---
T ss_pred             CCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCH-HHHHhcCcccCCEEEEEcCCcEEEeeeccCC---
Confidence            3489999999999999999999999999997 6999999999876 7889999999999999999999999888643   


Q ss_pred             CCCCHHHHHHHHHHC
Q psy12938        577 EGYFVEDVEAFLVEA  591 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~  591 (612)
                          .++|..+|.++
T Consensus        97 ----~~~l~~~l~~~  107 (109)
T 3tco_A           97 ----EDTLESTVNKY  107 (109)
T ss_dssp             ----HHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHH
Confidence                47888888753

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.43  E-value=9.8e-13  Score=112.68  Aligned_cols=93  Identities=10%  Similarity=0.253  Sum_probs=79.5

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |...+..  ...++++.||++||+.|+.+.+.|.+++++|+. ++|+.++.+..+ .+..+|.+.++||+++|++|+.+.
T Consensus        10 ~~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~   86 (105)
T 1fb6_A           10 WKEFVLE--SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP-GIATQYNIRSIPTVLFFKNGERKE   86 (105)
T ss_dssp             HHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             HHHHHhc--CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchH-HHHHhCCCCcccEEEEEeCCeEEE
Confidence            4444443  355899999999999999999999999999974 999999998775 688999999999999999999999


Q ss_pred             EEEeccccccCCCCHHHHHHHHHH
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++.|....       ++++.+|.+
T Consensus        87 ~~~G~~~~-------~~l~~~l~~  103 (105)
T 1fb6_A           87 SIIGAVPK-------STLTDSIEK  103 (105)
T ss_dssp             EEEECCCH-------HHHHHHHHH
T ss_pred             EEecCCCH-------HHHHHHHHh
Confidence            99887443       788888865

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.43  E-value=6.4e-13  Score=115.00  Aligned_cols=85  Identities=20%  Similarity=0.385  Sum_probs=76.0

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      .+++|+||++||++|+.+.+.|..++++|    +.++|++++.+..+ .+..+|.+..+||+++|++|+.+.++.|..  
T Consensus        22 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~--   98 (111)
T 3uvt_A           22 GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER-NICSKYSVRGYPTLLLFRGGKKVSEHSGGR--   98 (111)
T ss_dssp             SEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEECSCC--
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH-hHHHhcCCCcccEEEEEeCCcEEEeccCCc--
Confidence            37999999999999999999999999997    47999999999776 788999999999999999999999887753  


Q ss_pred             ccCCCCHHHHHHHHHHC
Q psy12938        575 LGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~  591 (612)
                           +.+.|..+|.++
T Consensus        99 -----~~~~l~~~l~~~  110 (111)
T 3uvt_A           99 -----DLDSLHRFVLSQ  110 (111)
T ss_dssp             -----SHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHhc
Confidence                 448999998764

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.43  E-value=8.6e-13  Score=112.33  Aligned_cols=85  Identities=18%  Similarity=0.281  Sum_probs=76.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      +.+++|+||++||+.|+.+.+.|.+++++|++++|+.++.+..+ .+..+|.+.++||+++|++|+.+.++.|...    
T Consensus        16 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~----   90 (104)
T 2e0q_A           16 HEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENP-DIAARYGVMSLPTVIFFKDGEPVDEIIGAVP----   90 (104)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH-HHHHHTTCCSSCEEEEEETTEEEEEEESCCC----
T ss_pred             CCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCH-HHHHhCCccccCEEEEEECCeEhhhccCCCC----
Confidence            34899999999999999999999999999988999999999775 7889999999999999999999998887633    


Q ss_pred             CCCHHHHHHHHHH
Q psy12938        578 GYFVEDVEAFLVE  590 (612)
Q Consensus       578 ~~~~~~lE~~L~~  590 (612)
                         .++|..+|.+
T Consensus        91 ---~~~l~~~l~~  100 (104)
T 2e0q_A           91 ---REEIEIRIKN  100 (104)
T ss_dssp             ---HHHHHHHHHH
T ss_pred             ---HHHHHHHHHH
Confidence               4788888865

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.43  E-value=5.5e-13  Score=118.52  Aligned_cols=84  Identities=12%  Similarity=0.200  Sum_probs=75.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC-CchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG-CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~-~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      +.+++|+||++||++|+.+.+.|++++++|++++|++++.+ ..+ .+..+|.+.++||+++|++|+.+.++.|..    
T Consensus        37 ~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~----  111 (124)
T 1faa_A           37 DKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENK-TLAKELGIRVVPTFKILKENSVVGEVTGAK----  111 (124)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH-HHHHHHCCSSSSEEEEEETTEEEEEEESSC----
T ss_pred             CCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchH-HHHHHcCCCeeeEEEEEeCCcEEEEEcCCC----
Confidence            45799999999999999999999999999999999999987 444 688999999999999999999999988762    


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                          .++|+.+|.+
T Consensus       112 ----~~~l~~~i~~  121 (124)
T 1faa_A          112 ----YDKLLEAIQA  121 (124)
T ss_dssp             ----HHHHHHHHHH
T ss_pred             ----HHHHHHHHHH
Confidence                3778888865

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.43  E-value=6.2e-13  Score=114.63  Aligned_cols=95  Identities=12%  Similarity=0.286  Sum_probs=80.5

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      ..|.+.+.+  .+.+++|+||++||+.|+.+.+.|++++++|+ .++|+.|+.+..+ .+..+|++.++||+++|++|+.
T Consensus         9 ~~~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~   85 (107)
T 1dby_A            9 DTFKNVVLE--SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP-NVASEYGIRSIPTIMVFKGGKK   85 (107)
T ss_dssp             HHHHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHHTCCSSCEEEEESSSSE
T ss_pred             HHHHHHHhc--CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-HHHHHCCCCcCCEEEEEeCCEE
Confidence            345555543  35589999999999999999999999999997 5999999998775 6889999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.++.|....       ++|+.+|.+
T Consensus        86 ~~~~~G~~~~-------~~l~~~l~~  104 (107)
T 1dby_A           86 CETIIGAVPK-------ATIVQTVEK  104 (107)
T ss_dssp             EEEEESCCCH-------HHHHHHHHH
T ss_pred             EEEEeCCCCH-------HHHHHHHHH
Confidence            9998886433       788888865

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.43  E-value=4.8e-13  Score=121.35  Aligned_cols=85  Identities=12%  Similarity=0.203  Sum_probs=75.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEE--CCE--EeeEEEecc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR--GGE--VVGNFVRLG  572 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk--~G~--~~~~~vg~~  572 (612)
                      ++.+|||+||++||++|+.|.+.|++++++| .+.|++|+.+..+ .+..+|.+.++||+++|+  +|+  .+.++.|+ 
T Consensus        39 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~~~g~g~~~~~~~G~-  115 (133)
T 3cxg_A           39 QNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLVDIDVDIHP-KLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGA-  115 (133)
T ss_dssp             CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEEEEETTTCH-HHHHHTTCCSSSEEEEEEEETTEEEEEEEEESC-
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEEEEeccchH-HHHHhcCCCCCCEEEEEEecCCCeEEEEEEcCC-
Confidence            4568999999999999999999999999998 7999999999775 788999999999999998  999  88888776 


Q ss_pred             ccccCCCCHHHHHHHHHHC
Q psy12938        573 EELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       573 ~~~g~~~~~~~lE~~L~~~  591 (612)
                      .       .++|+.+|.+.
T Consensus       116 ~-------~~~l~~~l~~~  127 (133)
T 3cxg_A          116 N-------QNDIEKAFQKY  127 (133)
T ss_dssp             C-------HHHHHHHHHHH
T ss_pred             C-------HHHHHHHHHHH
Confidence            2       47888888764

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.43  E-value=1e-12  Score=114.49  Aligned_cols=87  Identities=13%  Similarity=0.215  Sum_probs=77.1

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      ...+++|+||++||+.|+.+.+.|++++++|+ .++|+.|+.+..+ .+..+|.+..+||+++|++|+.+.++.|...  
T Consensus        24 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~--  100 (115)
T 1thx_A           24 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP-TTVKKYKVEGVPALRLVKGEQILDSTEGVIS--  100 (115)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESCCC--
T ss_pred             CCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCH-HHHHHcCCCceeEEEEEcCCEEEEEecCCCC--
Confidence            45589999999999999999999999999997 6999999999775 7889999999999999999999998887633  


Q ss_pred             cCCCCHHHHHHHHHHC
Q psy12938        576 GEGYFVEDVEAFLVEA  591 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~  591 (612)
                           .++|+.+|.++
T Consensus       101 -----~~~l~~~l~~~  111 (115)
T 1thx_A          101 -----KDKLLSFLDTH  111 (115)
T ss_dssp             -----HHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHH
Confidence                 47888888753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.42  E-value=4.7e-13  Score=136.77  Aligned_cols=88  Identities=18%  Similarity=0.260  Sum_probs=78.5

Q ss_pred             CCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        496 PRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       496 ~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      ++..+|+|+||++||++|+.|.+.|++++++|++ ++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|....
T Consensus        24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~  102 (287)
T 3qou_A           24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ-MIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPE  102 (287)
T ss_dssp             TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCH-HHHHTTTCCSSSEEEEEETTEEEEEEESCCCH
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCH-HHHHHcCCCCCCeEEEEECCEEEEEeeCCCCH
Confidence            3467999999999999999999999999999986 999999999876 78899999999999999999999999886443


Q ss_pred             ccCCCCHHHHHHHHHHC
Q psy12938        575 LGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~  591 (612)
                             +.++.+|.++
T Consensus       103 -------~~l~~~l~~~  112 (287)
T 3qou_A          103 -------EAIRALLDXV  112 (287)
T ss_dssp             -------HHHHHHHHHH
T ss_pred             -------HHHHHHHHHH
Confidence                   7788887664

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.42  E-value=6.3e-13  Score=115.59  Aligned_cols=85  Identities=15%  Similarity=0.418  Sum_probs=74.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      .+.+++|+||++||+.|+.+.+.|.+++++|+++.|+.|+.+..+ .+..+|.+.++||+++|++|+.+.++.|+ .   
T Consensus        25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~-~---   99 (113)
T 1ti3_A           25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELK-AVAEEWNVEAMPTFIFLKDGKLVDKTVGA-D---   99 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCH-HHHHHHHCSSTTEEEEEETTEEEEEEECC-C---
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccH-HHHHhCCCCcccEEEEEeCCEEEEEEecC-C---
Confidence            355899999999999999999999999999999999999999775 68899999999999999999999988874 2   


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                          .++|+.+|.+
T Consensus       100 ----~~~l~~~l~~  109 (113)
T 1ti3_A          100 ----KDGLPTLVAK  109 (113)
T ss_dssp             ----TTHHHHHHHH
T ss_pred             ----HHHHHHHHHH
Confidence                2567777654

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.41  E-value=1.1e-12  Score=120.74  Aligned_cols=87  Identities=20%  Similarity=0.390  Sum_probs=77.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      ...+|+|+||++||++|+.|.+.|++++++| +.+.|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|...  
T Consensus        54 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~--  130 (148)
T 3p2a_A           54 DDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP-ALSTRFRIRSIPTIMLYRNGKMIDMLNGAVP--  130 (148)
T ss_dssp             CSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEESSCCC--
T ss_pred             cCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCH-HHHHHCCCCccCEEEEEECCeEEEEEeCCCC--
Confidence            4558999999999999999999999999999 57999999999876 7889999999999999999999998877633  


Q ss_pred             cCCCCHHHHHHHHHHC
Q psy12938        576 GEGYFVEDVEAFLVEA  591 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~  591 (612)
                           .+.|..||.++
T Consensus       131 -----~~~l~~~l~~~  141 (148)
T 3p2a_A          131 -----KAPFDNWLDEQ  141 (148)
T ss_dssp             -----HHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHH
Confidence                 48888888753

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.40  E-value=9.9e-13  Score=112.92  Aligned_cols=85  Identities=19%  Similarity=0.387  Sum_probs=75.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      +.+++|+||++||+.|+.+.+.|++++++|++ ++|+.++.+..+ .+..+|.+.++||+++|++|+.+.++.|....  
T Consensus        17 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~--   93 (105)
T 1nsw_A           17 DGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP-ETTSQFGIMSIPTLILFKGGRPVKQLIGYQPK--   93 (105)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESCCCH--
T ss_pred             CCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCH-HHHHHcCCccccEEEEEeCCeEEEEEecCCCH--
Confidence            34899999999999999999999999999975 999999999775 78899999999999999999999988876433  


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                           ++|+.+|.+
T Consensus        94 -----~~l~~~l~~  102 (105)
T 1nsw_A           94 -----EQLEAQLAD  102 (105)
T ss_dssp             -----HHHHHHTTT
T ss_pred             -----HHHHHHHHH
Confidence                 778887753

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.40  E-value=1.3e-12  Score=114.42  Aligned_cols=84  Identities=19%  Similarity=0.345  Sum_probs=74.9

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      .+++|+||++||+.|+.+.+.|.+++++|++++|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|.       
T Consensus        29 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~-------  100 (118)
T 2vm1_A           29 KLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELK-DVAEAYNVEAMPTFLFIKDGEKVDSVVGG-------  100 (118)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSH-HHHHHTTCCSBSEEEEEETTEEEEEEESC-------
T ss_pred             CEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCH-HHHHHcCCCcCcEEEEEeCCeEEEEecCC-------
Confidence            4799999999999999999999999999999999999999775 67899999999999999999999988774       


Q ss_pred             CCHHHHHHHHHHC
Q psy12938        579 YFVEDVEAFLVEA  591 (612)
Q Consensus       579 ~~~~~lE~~L~~~  591 (612)
                       ..++|+.+|.++
T Consensus       101 -~~~~l~~~l~~~  112 (118)
T 2vm1_A          101 -RKDDIHTKIVAL  112 (118)
T ss_dssp             -CHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHH
Confidence             246788877653

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-12  Score=117.48  Aligned_cols=94  Identities=14%  Similarity=0.215  Sum_probs=77.9

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-----CceEEEecCCCchhchhhhCCCCCCcEEEEEECC
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGG  562 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G  562 (612)
                      |.+.+.+  ...+++|+||++||++|+.+.+.|.+++++|.     .++|++|+.+..+ .+..+|.+.++||+++|++|
T Consensus        17 ~~~~~~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g   93 (133)
T 1x5d_A           17 FDKNVLD--SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQ-VLASRYGIRGFPTIKIFQKG   93 (133)
T ss_dssp             HHHHTTT--SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCC-HHHHHHTCCSSSEEEEEETT
T ss_pred             HHHHHhc--CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCH-HHHHhCCCCeeCeEEEEeCC
Confidence            4444433  34589999999999999999999999999984     6999999998765 68899999999999999999


Q ss_pred             EEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        563 EVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       563 ~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +.+.++.|..       +.++|..+|.++
T Consensus        94 ~~~~~~~G~~-------~~~~l~~~l~~~  115 (133)
T 1x5d_A           94 ESPVDYDGGR-------TRSDIVSRALDL  115 (133)
T ss_dssp             EEEEEECSCC-------SHHHHHHHHHHH
T ss_pred             CceEEecCCC-------CHHHHHHHHHHH
Confidence            9888887753       347777777654

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.40  E-value=1.1e-12  Score=115.56  Aligned_cols=93  Identities=13%  Similarity=0.285  Sum_probs=78.9

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |...+.+  .+.+++|+||++||+.|+.+.+.|++++++|+ .++|++|+.+..+ .+..+|.+.++||+++|++|+.+.
T Consensus        22 ~~~~~~~--~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~i~~~Pt~~~~~~g~~~~   98 (121)
T 2i1u_A           22 FATDVLS--SNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP-ETARNFQVVSIPTLILFKDGQPVK   98 (121)
T ss_dssp             HHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             HHHHHHh--CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCH-HHHHhcCCCcCCEEEEEECCEEEE
Confidence            4444443  34589999999999999999999999999996 6999999999775 788999999999999999999999


Q ss_pred             EEEeccccccCCCCHHHHHHHHHH
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++.|...       .+.|..+|.+
T Consensus        99 ~~~G~~~-------~~~l~~~l~~  115 (121)
T 2i1u_A           99 RIVGAKG-------KAALLRELSD  115 (121)
T ss_dssp             EEESCCC-------HHHHHHHTCS
T ss_pred             EecCCCC-------HHHHHHHHHH
Confidence            8888643       3778888753

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.40  E-value=2.3e-12  Score=118.46  Aligned_cols=82  Identities=12%  Similarity=0.100  Sum_probs=69.3

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |...+.+. .+.+|+|+||++||++|+.+.+.|++|+++| +.++|++||.+..+ .+..+|.+.++||+++|++|+.+.
T Consensus        14 ~~~~v~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~~~~~~~i~~~Pt~~~~~~G~~v~   91 (142)
T 1qgv_A           14 VDQAILSE-EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP-DFNKMYELYDPCTVMFFFRNKHIM   91 (142)
T ss_dssp             HHHHHHTC-SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC-TTTTSSCSCSSCEEEEEETTEEEE
T ss_pred             HHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCH-HHHHHcCCCCCCEEEEEECCcEEE
Confidence            44444431 3468999999999999999999999999999 56999999999776 688999999999999999999998


Q ss_pred             EEEec
Q psy12938        567 NFVRL  571 (612)
Q Consensus       567 ~~vg~  571 (612)
                      ...|.
T Consensus        92 ~~~g~   96 (142)
T 1qgv_A           92 IDLGT   96 (142)
T ss_dssp             EECC-
T ss_pred             EecCC
Confidence            65553

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.39  E-value=1e-12  Score=116.84  Aligned_cols=86  Identities=12%  Similarity=0.288  Sum_probs=76.5

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      ...+++|.||++||+.|+.+.+.|++++++|+.  +.|++|+.+..+ .+..+|.+.++||+++|++|+.+.++.|. . 
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~-~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~-~-  108 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQS-QIAQEVGIRAMPTFVFFKNGQKIDTVVGA-D-  108 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCH-HHHHHHTCCSSSEEEEEETTEEEEEEESS-C-
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCH-HHHHHcCCCcccEEEEEECCeEEeeEcCC-C-
Confidence            355899999999999999999999999999986  999999999776 68899999999999999999999988775 3 


Q ss_pred             ccCCCCHHHHHHHHHHC
Q psy12938        575 LGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~  591 (612)
                            .++|+.+|.+.
T Consensus       109 ------~~~l~~~l~~~  119 (121)
T 2j23_A          109 ------PSKLQAAITQH  119 (121)
T ss_dssp             ------HHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHh
Confidence                  47888888753

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.39  E-value=1.6e-12  Score=128.27  Aligned_cols=95  Identities=14%  Similarity=0.252  Sum_probs=81.4

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |.+.+.+  +..+|+|+||++||++|+.|.+.|++|+++|+. ++|++|+.+..+ .+..+|.+.++||+++|++|+.+.
T Consensus        22 f~~~v~~--~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~~~   98 (222)
T 3dxb_A           22 FDTDVLK--ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEVAA   98 (222)
T ss_dssp             HHHHHTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCT-TTGGGGTCCSBSEEEEEETTEEEE
T ss_pred             HHHHHHh--cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCH-HHHHHcCCCcCCEEEEEECCeEEE
Confidence            4444443  355899999999999999999999999999986 999999999776 788999999999999999999999


Q ss_pred             EEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      ++.|...       .++|+.+|.+.-
T Consensus        99 ~~~G~~~-------~~~l~~~l~~~l  117 (222)
T 3dxb_A           99 TKVGALS-------KGQLKEFLDANL  117 (222)
T ss_dssp             EEESCCC-------HHHHHHHHHHHS
T ss_pred             EeccccC-------hHHHHHHHHhhc
Confidence            9988643       488888887653

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.38  E-value=1.6e-12  Score=117.98  Aligned_cols=86  Identities=13%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEE-ECCEEeeEEEecccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAY-RGGEVVGNFVRLGEE  574 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvy-k~G~~~~~~vg~~~~  574 (612)
                      ...+++|+||++||++|+.+.+.|.+++++|+ .++|++|+.+..+ .+..+|.+.++||+++| ++|+.+ .+.|.   
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~~G~~~-~~~G~---  111 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQ-ELAGAFGIRSIPSILFIPMEGKPE-MAQGA---  111 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHTTCCSSCEEEEECSSSCCE-EEESC---
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCH-HHHHHcCCCCCCEEEEECCCCcEE-EEeCC---
Confidence            34689999999999999999999999999997 6999999999775 78899999999999999 999987 56654   


Q ss_pred             ccCCCCHHHHHHHHHHC
Q psy12938        575 LGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~  591 (612)
                          .+.++|+.+|.++
T Consensus       112 ----~~~~~l~~~l~~~  124 (136)
T 2l5l_A          112 ----MPKASFKKAIDEF  124 (136)
T ss_dssp             ----CCHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHH
Confidence                3558899999865

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.38  E-value=2.2e-12  Score=110.86  Aligned_cols=85  Identities=12%  Similarity=0.230  Sum_probs=76.1

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      .+++|.||++||+.|+.+.+.|++++++|+ .+.|+.++.+..+ .+..+|.+.++||+++|++|+.+..+.|..     
T Consensus        19 ~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~~-----   92 (109)
T 2yzu_A           19 PLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP-KTAMRYRVMSIPTVILFKDGQPVEVLVGAQ-----   92 (109)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESCC-----
T ss_pred             CeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCH-hHHHhCCCCcCCEEEEEeCCcEeeeEeCCC-----
Confidence            489999999999999999999999999997 6999999998775 788999999999999999999999888763     


Q ss_pred             CCCHHHHHHHHHHC
Q psy12938        578 GYFVEDVEAFLVEA  591 (612)
Q Consensus       578 ~~~~~~lE~~L~~~  591 (612)
                        +.++|+.+|.+.
T Consensus        93 --~~~~l~~~l~~~  104 (109)
T 2yzu_A           93 --PKRNYQAKIEKH  104 (109)
T ss_dssp             --CHHHHHHHHHTT
T ss_pred             --CHHHHHHHHHHH
Confidence              348899988753

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.38  E-value=8.1e-13  Score=118.29  Aligned_cols=87  Identities=15%  Similarity=0.129  Sum_probs=73.6

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhc------CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEee--EEE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSH------TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVG--NFV  569 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~------~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~--~~v  569 (612)
                      ..+|+|+||++||++|+.|.+.|++||.+|      +.+.|++||.+..+ .+..+|.+.++||+++|++|..+.  .+.
T Consensus        33 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~  111 (127)
T 3h79_A           33 EKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP-DVIERMRVSGFPTMRYYTRIDKQEPFEYS  111 (127)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH-HHHHHTTCCSSSEEEEECSSCSSSCEECC
T ss_pred             CCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH-hHHHhcCCccCCEEEEEeCCCCCCceEec
Confidence            458999999999999999999999999764      46999999999876 788999999999999999987653  232


Q ss_pred             eccccccCCCCHHHHHHHHHHCC
Q psy12938        570 RLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       570 g~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      |       ..+.+.|..||.+++
T Consensus       112 G-------~~~~~~l~~~i~~~s  127 (127)
T 3h79_A          112 G-------QRYLSLVDSFVFQNT  127 (127)
T ss_dssp             S-------CCCHHHHHHHHHHHC
T ss_pred             C-------CccHHHHHHHHHhcC
Confidence            2       256799999998764

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.38  E-value=1.2e-12  Score=119.10  Aligned_cols=86  Identities=14%  Similarity=0.183  Sum_probs=74.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEE-ECCEEeeEEEecccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAY-RGGEVVGNFVRLGEE  574 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvy-k~G~~~~~~vg~~~~  574 (612)
                      ...+|+|+||++||++|+.+.+.|.+++++|+ .+.|++|+.+..+ .+..+|.+.++||+++| ++|+.+ .+.|..  
T Consensus        50 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~~g~~~-~~~G~~--  125 (141)
T 3hxs_A           50 GDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP-ELARDFGIQSIPTIWFVPMKGEPQ-VNMGAL--  125 (141)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEECSSSCCE-EEESCC--
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCH-HHHHHcCCCCcCEEEEEeCCCCEE-EEeCCC--
Confidence            35689999999999999999999999999997 6999999999876 78899999999999999 677766 676653  


Q ss_pred             ccCCCCHHHHHHHHHHC
Q psy12938        575 LGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~  591 (612)
                           +.++|+.+|.++
T Consensus       126 -----~~~~l~~~l~~~  137 (141)
T 3hxs_A          126 -----SKEQLKGYIDKV  137 (141)
T ss_dssp             -----CHHHHHHHHHHT
T ss_pred             -----CHHHHHHHHHHH
Confidence                 448899998764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=5.3e-13  Score=121.22  Aligned_cols=77  Identities=21%  Similarity=0.374  Sum_probs=69.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCC------CCcEEEEEECCEEeeEE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTS------GLPAMLAYRGGEVVGNF  568 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~------~lPtllvyk~G~~~~~~  568 (612)
                      +..+|+|+||++||++|+.+.+.|++++++|.  .++|++|+.+..+ .+..+|.+.      ++||+++|++|+.+.++
T Consensus        25 ~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~~~~~~~Pt~~~~~~G~~~~~~  103 (137)
T 2dj0_A           25 KRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYT-DVSTRYKVSTSPLTKQLPTLILFQGGKEAMRR  103 (137)
T ss_dssp             TTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCH-HHHHHTTCCCCSSSSCSSEEEEESSSSEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCH-HHHHHccCcccCCcCCCCEEEEEECCEEEEEe
Confidence            44589999999999999999999999999995  6999999999776 788999999      99999999999999999


Q ss_pred             Eecccc
Q psy12938        569 VRLGEE  574 (612)
Q Consensus       569 vg~~~~  574 (612)
                      .|....
T Consensus       104 ~G~~~~  109 (137)
T 2dj0_A          104 PQIDKK  109 (137)
T ss_dssp             SCBCSS
T ss_pred             cCcCch
Confidence            887554

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.37  E-value=8.4e-13  Score=116.85  Aligned_cols=100  Identities=10%  Similarity=0.100  Sum_probs=80.8

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      ..|.+.+.+  ...+++|+||++||++|+.+.+.|++++++|+ .++|++|+.+..+ .+..+|.+.++||+++|++|..
T Consensus        11 ~~f~~~~~~--~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~~~~   87 (122)
T 3aps_A           11 QTFNEKVLQ--GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP-QTCQKAGIKAYPSVKLYQYERA   87 (122)
T ss_dssp             HHHHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEEEEGG
T ss_pred             HHHHHHHhc--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCH-HHHHHcCCCccceEEEEeCCCc
Confidence            345444543  34589999999999999999999999999997 7999999999775 7889999999999999987777


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +.++.|.. .  ...+.+.|+.+|.+.
T Consensus        88 ~~~~~g~~-~--~~~~~~~l~~~l~~~  111 (122)
T 3aps_A           88 KKSIWEEQ-I--NSRDAKTIAALIYGK  111 (122)
T ss_dssp             GTEEEEEE-E--CCSCHHHHHHHHHHH
T ss_pred             cceeeccc-c--CcCCHHHHHHHHHHH
Confidence            88888862 1  124567888888653

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.36  E-value=1.7e-12  Score=115.82  Aligned_cols=89  Identities=13%  Similarity=0.189  Sum_probs=78.3

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEec--CCCchhchhhhCCCCCCcEEEEEE-CCEEeeEEEecc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVP--LGCVGDHFSATFKTSGLPAMLAYR-GGEVVGNFVRLG  572 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~--~~~~~d~~~~~~~i~~lPtllvyk-~G~~~~~~vg~~  572 (612)
                      ...+++|+||++||+.|+.+.+.|.+++++| ++++|++|+  .+... .+..+|.+.++||+++|+ +|+.+.++.|..
T Consensus        25 ~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~-~~~~~~~v~~~Pt~~~~~~~G~~~~~~~G~~  103 (126)
T 2l57_A           25 EGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNI-DLAYKYDANIVPTTVFLDKEGNKFYVHQGLM  103 (126)
T ss_dssp             SSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHH-HHHHHTTCCSSSEEEEECTTCCEEEEEESCC
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchH-HHHHHcCCcceeEEEEECCCCCEEEEecCCC
Confidence            4558999999999999999999999999999 689999999  77665 688999999999999999 999999988864


Q ss_pred             ccccCCCCHHHHHHHHHHCCc
Q psy12938        573 EELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       573 ~~~g~~~~~~~lE~~L~~~g~  593 (612)
                      .       .++|+.+|.++.-
T Consensus       104 ~-------~~~l~~~l~~~~~  117 (126)
T 2l57_A          104 R-------KNNIETILNSLGV  117 (126)
T ss_dssp             C-------HHHHHHHHHHHCC
T ss_pred             C-------HHHHHHHHHHHhc
Confidence            3       4889999987643

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.36  E-value=4.8e-13  Score=123.27  Aligned_cols=84  Identities=18%  Similarity=0.245  Sum_probs=66.7

Q ss_pred             eEEEEEeCCC--ChhhhhhHHHHHHHHhhcCCce--EEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        500 TVIAHLSSPS--LPACRALNSSLAELSRSHTNVK--FVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       500 ~Vvvhfy~~~--~~~C~~m~~~l~~LA~~~~~vk--F~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      .+||.||++|  |++|+.|.|.|++||++|+.++  |++||++..+ .++.+|.+.++||+++|++|+.+++++|.... 
T Consensus        36 ~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~-~la~~~~V~~iPT~~~fk~G~~v~~~~G~~~~-  113 (142)
T 2es7_A           36 DGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE-AIGDRFNVRRFPATLVFTDGKLRGALSGIHPW-  113 (142)
T ss_dssp             SEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHH-HHHHTTTCCSSSEEEEESCC----CEESCCCH-
T ss_pred             CEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCH-HHHHhcCCCcCCeEEEEeCCEEEEEEeCCCCH-
Confidence            4788899887  9999999999999999997799  9999999776 78899999999999999999999999987444 


Q ss_pred             cCCCCHHHHHHHHHHC
Q psy12938        576 GEGYFVEDVEAFLVEA  591 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~  591 (612)
                            ++|+.+|.++
T Consensus       114 ------~~l~~~i~~~  123 (142)
T 2es7_A          114 ------AELLTLMRSI  123 (142)
T ss_dssp             ------HHHHHHHHHH
T ss_pred             ------HHHHHHHHHH
Confidence                  7788888754

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.35  E-value=2.1e-12  Score=117.14  Aligned_cols=85  Identities=14%  Similarity=0.287  Sum_probs=73.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC----ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN----VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE  573 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~----vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~  573 (612)
                      ..+|+|+||++||+.|+.+.+.|.+++++|..    +.|++||.+... .+..+|.+.++||+++|++|+ +.++.|.  
T Consensus        34 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~-~~~~~g~--  109 (140)
T 2dj1_A           34 KDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS-MLASKFDVSGYPTIKILKKGQ-AVDYDGS--  109 (140)
T ss_dssp             CSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH-HHHHHTTCCSSSEEEEEETTE-EEECCSC--
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH-HHHHHCCCCccCeEEEEECCc-EEEcCCC--
Confidence            45899999999999999999999999998853    999999998765 688999999999999999999 5555553  


Q ss_pred             cccCCCCHHHHHHHHHHC
Q psy12938        574 ELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~~~  591 (612)
                           .+.++|..||.++
T Consensus       110 -----~~~~~l~~~l~~~  122 (140)
T 2dj1_A          110 -----RTQEEIVAKVREV  122 (140)
T ss_dssp             -----CCHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHh
Confidence                 3558899998764

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.35  E-value=2.7e-13  Score=119.03  Aligned_cols=84  Identities=12%  Similarity=0.031  Sum_probs=71.9

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCC-CCcEEEEEECCEEeeEEEeccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTS-GLPAMLAYRGGEVVGNFVRLGE  573 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~-~lPtllvyk~G~~~~~~vg~~~  573 (612)
                      +.+|+|.|+++||++|+++.+.|++++.+ ++++|++||+++..   +.++++|.++ ..|++++||||+.+.+-.--  
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~G~~v~~~SH~--  100 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNGEMVWNRDHG--  100 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEETTEEEEEEEGG--
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEECCEEEEEeecc--
Confidence            45899999999999999999999999987 88999999999764   2478999999 59999999999999975432  


Q ss_pred             cccCCCCHHHHHHHH
Q psy12938        574 ELGEGYFVEDVEAFL  588 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L  588 (612)
                          +++.+.|+..|
T Consensus       101 ----~I~~~~l~~~~  111 (112)
T 3iv4_A          101 ----DINVSSLAQAE  111 (112)
T ss_dssp             ----GCSHHHHHHHT
T ss_pred             ----ccCHHHHHHhh
Confidence                56667777654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.35  E-value=9.2e-13  Score=117.90  Aligned_cols=93  Identities=14%  Similarity=0.275  Sum_probs=74.8

Q ss_pred             HHHhhccCCCCceEEEEEeCCCCh--------------hhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCC
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLP--------------ACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSG  552 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~--------------~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~  552 (612)
                      |...+.+  .+.+|+|+||++||+              +|+.|.+.|++++++|+ .++|++|+.+..+ .+..+|.+.+
T Consensus        13 f~~~~~~--~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~-~l~~~~~v~~   89 (123)
T 1oaz_A           13 FDTDVLK--ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRG   89 (123)
T ss_dssp             HHHHTTS--CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCT-TTGGGGTCCB
T ss_pred             HHHHHHh--CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCH-HHHHHcCCCc
Confidence            4444433  456899999999999              99999999999999996 6999999999776 7889999999


Q ss_pred             CcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        553 LPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       553 lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +||+++|++|+.+.++.|...       .++|+.+|.+
T Consensus        90 ~Pt~~~~~~G~~~~~~~G~~~-------~~~l~~~l~~  120 (123)
T 1oaz_A           90 IPTLLLFKNGEVAATKVGALS-------KGQLKEFLDA  120 (123)
T ss_dssp             SSEEEEEESSSEEEEEESCCC-------HHHHHHHHTT
T ss_pred             cCEEEEEECCEEEEEEeCCCC-------HHHHHHHHHH
Confidence            999999999999999988643       4888888864

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.35  E-value=1.7e-12  Score=123.73  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             HHHHHhhccCCCCceEEEEEeC-------CCChhhhhhHHHHHHHHhhc------CCceEEEecCCCchhchhhhCCCCC
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSS-------PSLPACRALNSSLAELSRSH------TNVKFVSVPLGCVGDHFSATFKTSG  552 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~-------~~~~~C~~m~~~l~~LA~~~------~~vkF~ki~~~~~~d~~~~~~~i~~  552 (612)
                      ..|.+.|. .+++.+|||.|||       +||++|+.|.|.|++||++|      ..++|++||++..+ .+..+|.+++
T Consensus        26 ~nF~~~v~-~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~-~la~~~~I~s  103 (178)
T 3ga4_A           26 DNYPLLSR-GVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVP-QLVKDLKLQN  103 (178)
T ss_dssp             TTHHHHTT-CCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCH-HHHHHTTCCS
T ss_pred             HHHHHHHc-ccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCH-HHHHHcCCCC
Confidence            34655454 3456789999999       49999999999999999987      46999999999887 8899999999


Q ss_pred             CcEEEEEECCEEee---------EEEeccccccCCCCHHHHHHHHHHC
Q psy12938        553 LPAMLAYRGGEVVG---------NFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       553 lPtllvyk~G~~~~---------~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +|||++|++|....         ....+.=.-+.+++.+.|-+||.++
T Consensus       104 iPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~  151 (178)
T 3ga4_A          104 VPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKI  151 (178)
T ss_dssp             SCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHh
Confidence            99999999996543         1111100012368889999999763

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=2.6e-12  Score=114.62  Aligned_cols=83  Identities=18%  Similarity=0.306  Sum_probs=72.6

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      ++|+||++||++|+.+.+.|.+++++|+  .++|++|+.+... .+..+|.+.++||+++|++|+. .++.|.       
T Consensus        25 vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~G~~-~~~~G~-------   95 (126)
T 1x5e_A           25 WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQP-GLSGRFIINALPTIYHCKDGEF-RRYQGP-------   95 (126)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEE-EECCSC-------
T ss_pred             EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCH-HHHHHcCCcccCEEEEEeCCeE-EEeecC-------
Confidence            8999999999999999999999999986  6999999998775 6889999999999999999994 555553       


Q ss_pred             CCHHHHHHHHHHCC
Q psy12938        579 YFVEDVEAFLVEAG  592 (612)
Q Consensus       579 ~~~~~lE~~L~~~g  592 (612)
                      .+.++|+.+|.++-
T Consensus        96 ~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           96 RTKKDFINFISDKE  109 (126)
T ss_dssp             CCHHHHHHHHHTCG
T ss_pred             CCHHHHHHHHHHHh
Confidence            34589999998653

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.33  E-value=3.3e-12  Score=113.28  Aligned_cols=87  Identities=9%  Similarity=0.110  Sum_probs=65.1

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC------ceEEEecCCCc-hhchhhhCCCCCCcEEEEEECCEEeeEEE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN------VKFVSVPLGCV-GDHFSATFKTSGLPAMLAYRGGEVVGNFV  569 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~------vkF~ki~~~~~-~d~~~~~~~i~~lPtllvyk~G~~~~~~v  569 (612)
                      +...++|.||++||++|+.|++   .++..|..      +.+++|+++.. +..++.+|.+.++|||++|++|+.+.+++
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~---~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~Ri~   93 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDA---EIAPQYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESGRLE   93 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHH---HTTTTGGGSHHHHHSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEEEEE
T ss_pred             cCCCEEEEEECCCCHHHHHHHH---HHHhhHHHhhhcccceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEeeec
Confidence            4458999999999999999996   45555543      57788777643 23677899999999999999999999999


Q ss_pred             eccccccCCCCHHHHHHHHH
Q psy12938        570 RLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       570 g~~~~~g~~~~~~~lE~~L~  589 (612)
                      |+...   +.+...|+.+|.
T Consensus        94 G~~~~---~~f~~~L~~~l~  110 (116)
T 3dml_A           94 GYPGE---DFFWPMLARLIG  110 (116)
T ss_dssp             CCCCH---HHHHHHHHHHHH
T ss_pred             CCCCH---HHHHHHHHHHHh
Confidence            98555   334444444443

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.31  E-value=2.6e-12  Score=115.00  Aligned_cols=85  Identities=11%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE-eeEEEeccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV-VGNFVRLGEEL  575 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~-~~~~vg~~~~~  575 (612)
                      ..+++|+||++||++|+.+.+.|++++++|++ ++|++|+.+... .+..+|.+.++||+++|++|.. +.++.|.    
T Consensus        35 ~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~~~~~~~~~~G~----  109 (130)
T 2dml_A           35 DGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQ-SLGGQYGVQGFPTIKIFGANKNKPEDYQGG----  109 (130)
T ss_dssp             SSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCH-HHHHHHTCCSSSEEEEESSCTTSCEECCSC----
T ss_pred             CCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCH-HHHHHcCCCccCEEEEEeCCCCeEEEeecC----
Confidence            45899999999999999999999999999976 999999999775 7889999999999999998776 6655554    


Q ss_pred             cCCCCHHHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFLVE  590 (612)
Q Consensus       576 g~~~~~~~lE~~L~~  590 (612)
                         .+.++|..+|.+
T Consensus       110 ---~~~~~l~~~l~~  121 (130)
T 2dml_A          110 ---RTGEAIVDAALS  121 (130)
T ss_dssp             ---CSHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHH
Confidence               234677777764

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.29  E-value=2.1e-12  Score=113.94  Aligned_cols=83  Identities=12%  Similarity=0.241  Sum_probs=67.0

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCC----CchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLG----CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE  573 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~----~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~  573 (612)
                      .+++|+||++||++|+.+.+.|.++++++. .+.|+.++..    ... .+..+|.+.++||+++|++|+.+.++.|.. 
T Consensus        30 ~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~i~~~Pt~~~~~~G~~~~~~~G~~-  107 (118)
T 1zma_A           30 ETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQ-AFRSRYGIPTVPGFVHITDGQINVRCDSSM-  107 (118)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHH-HHHHHHTCCSSCEEEEEETTEEEEECCTTC-
T ss_pred             CeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHH-HHHHHcCCCCCCeEEEEECCEEEEEecCCC-
Confidence            479999999999999999999999999885 4666644432    122 466899999999999999999998877653 


Q ss_pred             cccCCCCHHHHHHHHH
Q psy12938        574 ELGEGYFVEDVEAFLV  589 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~  589 (612)
                            +.++|+.||.
T Consensus       108 ------~~~~l~~~l~  117 (118)
T 1zma_A          108 ------SAQEIKDFAG  117 (118)
T ss_dssp             ------CHHHHHHHHT
T ss_pred             ------CHHHHHHHhh
Confidence                  3478888874

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.28  E-value=1.3e-11  Score=116.74  Aligned_cols=73  Identities=15%  Similarity=0.164  Sum_probs=64.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCC---CCCCcEEEEEEC-CEEeeEEEe
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFK---TSGLPAMLAYRG-GEVVGNFVR  570 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~---i~~lPtllvyk~-G~~~~~~vg  570 (612)
                      +..+|||.||++||++|+.+.|.|++|+++|++++|++|+.+..+ .++.+|.   +.++||+++|++ |+.+.++.+
T Consensus        53 ~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~-~~~~~~~~~~v~~iPt~i~~~~~G~~~~~~g~  129 (167)
T 1z6n_A           53 ERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAE-DDLRQRLALERIAIPLVLVLDEEFNLLGRFVE  129 (167)
T ss_dssp             CSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHH-HHTTTTTTCSSCCSSEEEEECTTCCEEEEEES
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCH-HHHHHHHHcCCCCcCeEEEECCCCCEEEEEcC
Confidence            345899999999999999999999999999999999999988665 5667887   999999999998 588887744

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.27  E-value=3.4e-12  Score=115.61  Aligned_cols=86  Identities=14%  Similarity=0.224  Sum_probs=74.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHH---HHHHhhcCCceEEEecCC----CchhchhhhCCCCCCcEEEEE-ECCEEe--eE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSL---AELSRSHTNVKFVSVPLG----CVGDHFSATFKTSGLPAMLAY-RGGEVV--GN  567 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~~vkF~ki~~~----~~~d~~~~~~~i~~lPtllvy-k~G~~~--~~  567 (612)
                      +.+|+|+||++||++|+.|.+.+   ..++++|+++.|++|+.+    ... .+..+|.+.++||+++| ++|+.+  .+
T Consensus        31 ~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~-~l~~~~~v~~~Pt~~~~d~~G~~v~~~~  109 (134)
T 2fwh_A           31 GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDV-ALLKHLNVLGLPTILFFDGQGQEHPQAR  109 (134)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHH-HHHHHTTCCSSSEEEEECTTSCBCGGGC
T ss_pred             CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHH-HHHHHcCCCCCCEEEEECCCCCEeeeee
Confidence            44799999999999999999999   999999999999999984    333 67789999999999999 999998  67


Q ss_pred             EEeccccccCCCCHHHHHHHHHHC
Q psy12938        568 FVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       568 ~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      ++|....       ++|+.+|.+.
T Consensus       110 ~~G~~~~-------~~l~~~l~~~  126 (134)
T 2fwh_A          110 VTGFMDA-------ETFSAHLRDR  126 (134)
T ss_dssp             BCSCCCH-------HHHHHHHHHC
T ss_pred             eeeccCH-------HHHHHHHHhc
Confidence            8776444       8899988754

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.27  E-value=5.1e-12  Score=113.74  Aligned_cols=92  Identities=16%  Similarity=0.202  Sum_probs=78.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHH--HHHhhc-CCceEEEecC---CCchhchhhhCCC---CCCcEEEEE-ECCEEeeE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLA--ELSRSH-TNVKFVSVPL---GCVGDHFSATFKT---SGLPAMLAY-RGGEVVGN  567 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~--~LA~~~-~~vkF~ki~~---~~~~d~~~~~~~i---~~lPtllvy-k~G~~~~~  567 (612)
                      +.+|+|+||++||++|+.|.+.|.  .++.+| .++.|++|+.   +..+ .+..+|.+   .++||+++| ++|+.+.+
T Consensus        29 ~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~-~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~  107 (133)
T 3fk8_A           29 HKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNL-ELSQAYGDPIQDGIPAVVVVNSDGKVRYT  107 (133)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSH-HHHHHTTCGGGGCSSEEEEECTTSCEEEE
T ss_pred             CCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchH-HHHHHhCCccCCccceEEEECCCCCEEEE
Confidence            347999999999999999999999  999998 5799999999   7665 78899999   999999999 99999998


Q ss_pred             EEeccccccCCCCHHHHHHHHHH
Q psy12938        568 FVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       568 ~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.|-.-..+...+.++++.||.+
T Consensus       108 ~~g~~~~~~~~~~~~~l~~~l~~  130 (133)
T 3fk8_A          108 TKGGELANARKMSDQGIYDFFAK  130 (133)
T ss_dssp             CCSCTTTTGGGSCHHHHHHHHHH
T ss_pred             ecCCcccccccCCHHHHHHHHHH
Confidence            87732222234667999999875

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.92  E-value=4.3e-13  Score=114.65  Aligned_cols=100  Identities=21%  Similarity=0.353  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEE
Q psy12938        481 KQMYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAY  559 (612)
Q Consensus       481 ~el~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvy  559 (612)
                      .+|....|.+.+.+  ...+++|.||++||+.|+.+.+.|.+++++|+ ++.|+.++.+..+ .+..+|.+.++||+++|
T Consensus         4 ~~l~~~~~~~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~   80 (106)
T 2yj7_A            4 IEVTDENFEQEVLK--SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENP-NTAAQYGIRSIPTLLLF   80 (106)
Confidence            44555556555533  34589999999999999999999999999997 6999999998765 67899999999999999


Q ss_pred             ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        560 RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       560 k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++|+.+..+.|....       ++|+.+|.+
T Consensus        81 ~~g~~~~~~~g~~~~-------~~l~~~l~~  104 (106)
T 2yj7_A           81 KNGQVVDRLVGAQPK-------EALKERIDK  104 (106)
Confidence            999999988876433       667776654

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.26  E-value=1.3e-11  Score=101.63  Aligned_cols=80  Identities=16%  Similarity=0.262  Sum_probs=69.1

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      ..+++.||++||+.|+.+.+.|++++++|+ +++|+.++.+..+ .+..+|++.++||+++  +|+.  ++.|..     
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~--~G~~--~~~G~~-----   72 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP-QKAMEYGIMAVPTIVI--NGDV--EFIGAP-----   72 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSC-CTTTSTTTCCSSEEEE--TTEE--ECCSSS-----
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCH-HHHHHCCCcccCEEEE--CCEE--eeecCC-----
Confidence            368999999999999999999999999998 7999999998765 6789999999999999  9987  555542     


Q ss_pred             CCCHHHHHHHHHH
Q psy12938        578 GYFVEDVEAFLVE  590 (612)
Q Consensus       578 ~~~~~~lE~~L~~  590 (612)
                        +.++|+.+|.+
T Consensus        73 --~~~~l~~~l~~   83 (85)
T 1fo5_A           73 --TKEALVEAIKK   83 (85)
T ss_dssp             --SSHHHHHHHHH
T ss_pred             --CHHHHHHHHHH
Confidence              34888888875

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.25  E-value=5.7e-12  Score=110.24  Aligned_cols=85  Identities=14%  Similarity=0.307  Sum_probs=73.3

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe--eEEEecc
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV--GNFVRLG  572 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~--~~~vg~~  572 (612)
                      .+++|+||++||+.|+.+.+.|.+++++|.    .+.|++++.+..+ .+..+|.+.++||+++|++|+.+  ..+.|. 
T Consensus        25 ~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~-  102 (120)
T 1mek_A           25 KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES-DLAQQYGVRGYPTIKFFRNGDTASPKEYTAG-  102 (120)
T ss_dssp             SEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC-SSHHHHTCCSSSEEEEEESSCSSSCEECCCC-
T ss_pred             CeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH-HHHHHCCCCcccEEEEEeCCCcCCcccccCc-
Confidence            479999999999999999999999999984    6999999998765 67899999999999999999977  655553 


Q ss_pred             ccccCCCCHHHHHHHHHHC
Q psy12938        573 EELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       573 ~~~g~~~~~~~lE~~L~~~  591 (612)
                            .+.+.|..+|.++
T Consensus       103 ------~~~~~l~~~l~~~  115 (120)
T 1mek_A          103 ------READDIVNWLKKR  115 (120)
T ss_dssp             ------SSHHHHHHHHHTT
T ss_pred             ------cCHHHHHHHHHhc
Confidence                  3558899998754

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.25  E-value=8.1e-12  Score=122.06  Aligned_cols=95  Identities=16%  Similarity=0.234  Sum_probs=79.8

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      ..|...+.   ...+|+|+||++||++|+.+.+.|++++++|+ .++|++|+.+..+ .+..+|.+.++||+++|++|+.
T Consensus       105 ~~f~~~~~---~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~  180 (210)
T 3apq_A          105 REFDAAVN---SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDR-MLCRMKGVNSYPSLFIFRSGMA  180 (210)
T ss_dssp             HHHHHHHH---HSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCH-HHHHHTTCCSSSEEEEECTTSC
T ss_pred             HHHHHHHc---cCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccH-HHHHHcCCCcCCeEEEEECCCc
Confidence            34555553   24489999999999999999999999999996 4999999999776 7889999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +.++.|.       .+.++|+.+|.++
T Consensus       181 ~~~~~G~-------~~~~~l~~~i~~~  200 (210)
T 3apq_A          181 AVKYNGD-------RSKESLVAFAMQH  200 (210)
T ss_dssp             CEECCSC-------CCHHHHHHHHHHH
T ss_pred             eeEecCC-------CCHHHHHHHHHHh
Confidence            8877764       3458888888753

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.24  E-value=1.3e-11  Score=101.54  Aligned_cols=79  Identities=16%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      .+|+.||++||+.|+.+.+.|++++++|+ +++|+.++.+..+ .+..+|++.++||+++  +|+.  ++.|...     
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~--~G~~--~~~G~~~-----   72 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDR-EKAIEYGLMAVPAIAI--NGVV--RFVGAPS-----   72 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCG-GGGGGTCSSCSSEEEE--TTTE--EEECSSC-----
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCH-HHHHhCCceeeCEEEE--CCEE--EEccCCC-----
Confidence            46899999999999999999999999998 7999999999775 7889999999999999  8887  6777533     


Q ss_pred             CCHHHHHHHHHH
Q psy12938        579 YFVEDVEAFLVE  590 (612)
Q Consensus       579 ~~~~~lE~~L~~  590 (612)
                        .++|+.+|.+
T Consensus        73 --~~~l~~~l~~   82 (85)
T 1nho_A           73 --REELFEAIND   82 (85)
T ss_dssp             --CHHHHHHHHH
T ss_pred             --HHHHHHHHHH
Confidence              3788888865

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.24  E-value=3.6e-11  Score=117.04  Aligned_cols=97  Identities=23%  Similarity=0.339  Sum_probs=81.9

Q ss_pred             CCCeEEEECCeecCC--CCHHHHHHHHhcCCCe-EEEEEeecCCCCc-------------hh------------hHHh--
Q psy12938          1 VNDQIIEVDGKSLVG--VTQEYAASVLRNTSGL-VRFLIGREKDPVN-------------SE------------VAQL--   50 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~--~th~~av~~Lk~~~~~-v~l~v~r~~~~~~-------------~~------------i~~i--   50 (612)
                      +||+|++|||.++.+  ++|.+++.+++.++.. +.|+|.|......             ..            |..+  
T Consensus        66 ~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v~l~~~~~~~lG~~~~~~~~gv~V~~V~~  145 (206)
T 3r0h_A           66 IFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQ  145 (206)
T ss_dssp             TTCEEEEETTEECCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSCCEEEEEEEEECCTTCCCCEEEEECSSCEEEEEECT
T ss_pred             CCCEEEEECCEEcCCCccCHHHHHHHHHhcCCCceEEEEEecccCCCcEEEEEEecCCCCccCeEEEcCCceEEEEEECC
Confidence            589999999999999  9999999999998887 9999988643210             00            2222  


Q ss_pred             -----hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 -----IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 -----~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                           ..|+|++||+|++|||+++.++++++++.+|+.+++.|.|+|.|...
T Consensus       146 gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~  197 (206)
T 3r0h_A          146 GQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKP  197 (206)
T ss_dssp             TSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEECC
T ss_pred             CChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence                 23459999999999999999999999999999999999999999765

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.23  E-value=8.2e-12  Score=112.14  Aligned_cols=91  Identities=14%  Similarity=0.255  Sum_probs=73.6

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE  573 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~  573 (612)
                      ...+|+|+||++||++|+.|.+.|++++++|.   .+.|++||.+... .+..+|.+.++||+++|++|..+..+. +  
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~-~--   99 (133)
T 2dj3_A           24 PKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND-ITNDQYKVEGFPTIYFAPSGDKKNPIK-F--   99 (133)
T ss_dssp             TTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSC-CCCSSCCCSSSSEEEEECTTCTTSCEE-C--
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCH-HHHhhcCCCcCCEEEEEeCCCcccceE-e--
Confidence            35689999999999999999999999999985   6999999998764 667889999999999999987655321 1  


Q ss_pred             cccCCCCHHHHHHHHHHCC
Q psy12938        574 ELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~~~g  592 (612)
                       .|...+.++|..+|.++-
T Consensus       100 -~gg~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A          100 -EGGNRDLEHLSKFIDEHA  117 (133)
T ss_dssp             -CSSCCSTTHHHHHHHHHS
T ss_pred             -cCCCcCHHHHHHHHHHhc
Confidence             112245678999987753

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.21  E-value=3.3e-11  Score=118.32  Aligned_cols=83  Identities=14%  Similarity=0.116  Sum_probs=74.1

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC-----CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT-----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      +++|+||++||++|+.+.+.|..||.+|+     .++|++|+.+..+ .+..+|.+.++||+++|++|+.+..+.|....
T Consensus       136 ~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~  214 (226)
T 1a8l_A          136 VRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP-EWADQYNVMAVPKIVIQVNGEDRVEFEGAYPE  214 (226)
T ss_dssp             EEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH-HHHHHTTCCSSCEEEEEETTEEEEEEESCCCH
T ss_pred             cEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCH-HHHHhCCCcccCeEEEEeCCceeEEEcCCCCH
Confidence            45999999999999999999999999997     8999999998765 68899999999999999999999988886443


Q ss_pred             ccCCCCHHHHHHHHHH
Q psy12938        575 LGEGYFVEDVEAFLVE  590 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~  590 (612)
                             ++|+.+|.+
T Consensus       215 -------~~l~~~l~~  223 (226)
T 1a8l_A          215 -------KMFLEKLLS  223 (226)
T ss_dssp             -------HHHHHHHHH
T ss_pred             -------HHHHHHHHH
Confidence                   778888865

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.21  E-value=1.6e-11  Score=108.21  Aligned_cols=85  Identities=22%  Similarity=0.327  Sum_probs=70.6

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC------CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE--eeEE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT------NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV--VGNF  568 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~------~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~--~~~~  568 (612)
                      ...+|+|+||++||++|+.+.+.|++++++|+      .++|++||.+..+  +..  .+.++||+++|++|..  +.++
T Consensus        24 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~--~v~~~Pt~~~~~~~~~~~~~~~   99 (121)
T 2djj_A           24 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND--VPD--EIQGFPTIKLYPAGAKGQPVTY   99 (121)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC--CSS--CCSSSSEEEEECSSCTTSCCCC
T ss_pred             CCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc--ccc--ccCcCCeEEEEeCcCCCCceEe
Confidence            45689999999999999999999999999996      5999999998663  433  9999999999999854  5555


Q ss_pred             EeccccccCCCCHHHHHHHHHHCC
Q psy12938        569 VRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       569 vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      .|.       .+.++|..||.++.
T Consensus       100 ~G~-------~~~~~l~~~i~~~~  116 (121)
T 2djj_A          100 SGS-------RTVEDLIKFIAENG  116 (121)
T ss_dssp             CCC-------SCHHHHHHHHHHTS
T ss_pred             cCC-------CCHHHHHHHHHhcc
Confidence            543       35689999998764

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.19  E-value=1.6e-12  Score=116.11  Aligned_cols=85  Identities=16%  Similarity=0.323  Sum_probs=73.9

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      +.+++|+||++||+.|+.+.+.|.+++++|++++|+.|+.+..+ .+..+|.+.++||+++|++|+.+.++.|.      
T Consensus        36 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~g~------  108 (130)
T 1wmj_A           36 GKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELK-EVAEKYNVEAMPTFLFIKDGAEADKVVGA------  108 (130)
T ss_dssp             TCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSG-GGHHHHTCCSSCCCCBCTTTTCCBCCCTT------
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchH-HHHHHcCCCccceEEEEeCCeEEEEEeCC------
Confidence            44799999999999999999999999999999999999999775 78899999999999999999998877663      


Q ss_pred             CCCHHHHHHHHHHC
Q psy12938        578 GYFVEDVEAFLVEA  591 (612)
Q Consensus       578 ~~~~~~lE~~L~~~  591 (612)
                        ..++|+.+|.++
T Consensus       109 --~~~~l~~~l~~~  120 (130)
T 1wmj_A          109 --RKDDLQNTIVKH  120 (130)
T ss_dssp             --CTTTHHHHHHHH
T ss_pred             --CHHHHHHHHHHH
Confidence              225677777653

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.19  E-value=4e-11  Score=106.94  Aligned_cols=93  Identities=17%  Similarity=0.277  Sum_probs=73.9

Q ss_pred             HHHhhccCCCCceEEEEEeCC-------CChhhhhhHHHHHHHHhhcC-CceEEEecC-------CCchhchhhhCCCCC
Q psy12938        488 FLSEIDSEPRHITVIAHLSSP-------SLPACRALNSSLAELSRSHT-NVKFVSVPL-------GCVGDHFSATFKTSG  552 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~-------~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~-------~~~~d~~~~~~~i~~  552 (612)
                      |...+.+. ...+|+|+||++       ||++|+.+.+.|.+++++|+ +++|++|+.       +..+ .+..+|.+.+
T Consensus        15 ~~~~~~~~-~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~-~~~~~~~i~~   92 (123)
T 1wou_A           15 FHRAVEQH-NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNN-DFRKNLKVTA   92 (123)
T ss_dssp             HHHHHHTT-TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTC-HHHHHHCCCS
T ss_pred             HHHHHHHh-CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhH-HHHHHCCCCe
Confidence            44444432 356899999999       99999999999999999996 799999999       6554 6778899999


Q ss_pred             CcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        553 LPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       553 lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +||+++|++|   .+++|+.     ....+.|+.||.+
T Consensus        93 ~Pt~~~~~~~---~~~~g~~-----~~~~~~l~~~i~~  122 (123)
T 1wou_A           93 VPTLLKYGTP---QKLVESE-----CLQANLVEMLFSE  122 (123)
T ss_dssp             SSEEEETTSS---CEEEGGG-----GGCHHHHHHHHHC
T ss_pred             eCEEEEEcCC---ceEeccc-----cCCHHHHHHHHhc
Confidence            9999999984   4455542     2346788888863

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.19  E-value=2.4e-11  Score=116.93  Aligned_cols=99  Identities=31%  Similarity=0.484  Sum_probs=79.0

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeecccc-----
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG-----  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~-----  378 (612)
                      .+++.+|+|.|+..||||+|.|   |.+.+.  ++.|+||..|.|||+|++.|+|++||    |||.++.++++.     
T Consensus         3 ~~~~~~v~l~~~~~~lG~~i~~---g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~   79 (196)
T 3gsl_A            3 SMEYEEITLERGNSGLGFSIAG---GTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEA   79 (196)
T ss_dssp             CEEEEEEEEECBTTBSSEEEEC---CTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CcEEEEEEEEECCCCCCEEEEc---ccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3567789999999999999999   555432  46799999999999999999999999    788777553211     


Q ss_pred             -------------------------------------------cCCCCcccceEEEEeeccccccccCcceeccCC
Q psy12938        379 -------------------------------------------ADAGLEKLGIFVKTITEAGAAARDGRIQVRRGP  411 (612)
Q Consensus       379 -------------------------------------------~~~~~~~~~i~i~~i~~~~~a~~dg~l~~~~~~  411 (612)
                                                                 ......+.|+||..|.++++|++.|+|+.||--
T Consensus        80 ~~~~g~~v~l~v~r~~~~~~~~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~I  155 (196)
T 3gsl_A           80 LKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKI  155 (196)
T ss_dssp             HHTSCSEEEEEEEEECCCCEEEEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEE
T ss_pred             HHhCCCcEEEEEEecCCCccccEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEE
Confidence                                                       011123468999999999999999999999853

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.19  E-value=1.2e-10  Score=111.94  Aligned_cols=97  Identities=29%  Similarity=0.436  Sum_probs=81.5

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCCCch--------------------------------hhH
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS--------------------------------EVA   48 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~~~~--------------------------------~i~   48 (612)
                      +||+|++|||.++.+.+|.+++.+++.++..+.|+|.|.......                                .|.
T Consensus        56 ~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~v~l~~~~~~lG~~~~~~~~~~~~~~~~gv~V~  135 (196)
T 3gsl_A           56 VNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVT  135 (196)
T ss_dssp             TTCEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEECCCCEEEEEEEEEEBTTBSCEEEEESBTSCSBTTBCCEEEE
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCCCccccEEEEEecCCCCceEEEEccCCCcCCCCCCCEEEE
Confidence            599999999999999999999999999999999999876422100                                022


Q ss_pred             Hh-------hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QL-------IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i-------~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      .+       ..|+|++||+|++|||+++.++++++++.+|+.++..+.|+|.|...
T Consensus       136 ~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~  191 (196)
T 3gsl_A          136 KIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN  191 (196)
T ss_dssp             EECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHSCCEEEEEEEEEESC
T ss_pred             EECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            22       23459999999999999999999999999999999999999998643

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.13  E-value=9.4e-11  Score=115.88  Aligned_cols=85  Identities=15%  Similarity=0.293  Sum_probs=73.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC----ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN----VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE  573 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~----vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~  573 (612)
                      +.+|+|+||++||++|+.+.+.|.+|+++|..    +.|++||.+..+ .+..+|.+.++||+++|++|+.+. +.|.  
T Consensus        32 ~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~~~-~~g~--  107 (241)
T 3idv_A           32 KDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS-VLASRFDVSGYPTIKILKKGQAVD-YEGS--  107 (241)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEE-CCSC--
T ss_pred             CCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH-HHHHhcCCCcCCEEEEEcCCCccc-ccCc--
Confidence            45899999999999999999999999998753    999999999776 788999999999999999999773 4433  


Q ss_pred             cccCCCCHHHHHHHHHHC
Q psy12938        574 ELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~~~  591 (612)
                           .+.++|..++.++
T Consensus       108 -----~~~~~l~~~i~~~  120 (241)
T 3idv_A          108 -----RTQEEIVAKVREV  120 (241)
T ss_dssp             -----SCHHHHHHHHHHH
T ss_pred             -----ccHHHHHHHHhhc
Confidence                 4558888888765

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.12  E-value=9.4e-11  Score=121.15  Aligned_cols=101  Identities=15%  Similarity=0.235  Sum_probs=74.8

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCC--CchhchhhhCCCCCCcEEEEEECCE
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLG--CVGDHFSATFKTSGLPAMLAYRGGE  563 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~--~~~d~~~~~~~i~~lPtllvyk~G~  563 (612)
                      .|.+.+.+  ...+|+|.||++||++|+.|.+.|+++|++|.. +.|+.|+.+  ..+ .+..+|.+.++||+++|++|+
T Consensus        26 ~f~~~i~~--~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~~-~l~~~~~I~~~Pt~~~~~~g~  102 (298)
T 3ed3_A           26 SFDKAIHN--TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK-ALCAKYDVNGFPTLMVFRPPK  102 (298)
T ss_dssp             HHHHHHTS--SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTTH-HHHHHTTCCBSSEEEEEECCC
T ss_pred             HHHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccCH-HHHHhCCCCccceEEEEECCc
Confidence            45555533  345799999999999999999999999999975 899999877  444 688999999999999999998


Q ss_pred             EeeEEEe-----------ccccccCCCCHHHHHHHHHHC
Q psy12938        564 VVGNFVR-----------LGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       564 ~~~~~vg-----------~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .+.+..|           .....| ..+.+.|..||.+.
T Consensus       103 ~v~~~~g~~~~~~~~~~~~~~y~G-~r~~~~i~~fl~~~  140 (298)
T 3ed3_A          103 IDLSKPIDNAKKSFSAHANEVYSG-ARTLAPIVDFSLSR  140 (298)
T ss_dssp             C-------------CCCEEEECCS-CCSHHHHHHHHHTT
T ss_pred             eeecccccccccccccccceeecC-CcCHHHHHHHHHHh
Confidence            6555444           112222 35678888888654

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.12  E-value=1.2e-10  Score=127.66  Aligned_cols=97  Identities=15%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      .|.+.+.+.....+++|+||++||++|+.|.+.|+.+|+++.. ++|++||.+..+ .+..+|.+.++||+++|++|+.+
T Consensus        10 ~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Ptl~~~~~g~~~   88 (481)
T 3f8u_A           10 NFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANT-NTCNKYGVSGYPTLKIFRDGEEA   88 (481)
T ss_dssp             THHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCH-HHHHHTTCCEESEEEEEETTEEE
T ss_pred             HHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCH-HHHHhcCCCCCCEEEEEeCCcee
Confidence            4556664433346999999999999999999999999999976 999999999776 78899999999999999999888


Q ss_pred             eEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        566 GNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       566 ~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      ..+.|.       .+.+.|..||.++
T Consensus        89 ~~~~G~-------~~~~~l~~~~~~~  107 (481)
T 3f8u_A           89 GAYDGP-------RTADGIVSHLKKQ  107 (481)
T ss_dssp             EECCSC-------SSHHHHHHHHHHH
T ss_pred             eeecCc-------cCHHHHHHHHHhh
Confidence            777664       3447788887654

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.12  E-value=1.3e-10  Score=116.11  Aligned_cols=97  Identities=10%  Similarity=0.124  Sum_probs=74.3

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecC--CCchhchhhhCCCCCCcEEEEEEC
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPL--GCVGDHFSATFKTSGLPAMLAYRG  561 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~--~~~~d~~~~~~~i~~lPtllvyk~  561 (612)
                      |...+.+  ...+++|+||++||++|+.+.+.|++||++|+    .++|++|+.  +... .+..+|.+.++||+++|++
T Consensus        22 f~~~i~~--~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~l~~~~~v~~~Pt~~~~~~   98 (244)
T 3q6o_A           22 VRGAVLG--SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNS-AVCRDFNIPGFPTVRFFXA   98 (244)
T ss_dssp             HHHHHSS--CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTTH-HHHHHTTCCSSSEEEEECT
T ss_pred             HHHHHhh--CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhhH-HHHHHcCCCccCEEEEEeC
Confidence            4444543  34689999999999999999999999999997    599999998  4454 7889999999999999999


Q ss_pred             CEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        562 GEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       562 G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      |...+.-..+ ...|  .+.+.|+.+|.+
T Consensus        99 g~~~~~g~~~-~~~g--~~~~~l~~~i~~  124 (244)
T 3q6o_A           99 FTXNGSGAVF-PVAG--ADVQTLRERLID  124 (244)
T ss_dssp             TCCSSSCEEC-CCTT--CCHHHHHHHHHH
T ss_pred             CCcCCCCeeE-ecCC--CCHHHHHHHHHH
Confidence            8776532222 2223  356777776654

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.09  E-value=3.7e-11  Score=111.75  Aligned_cols=92  Identities=11%  Similarity=0.026  Sum_probs=67.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHh--hcCCceEEEecCCCchhchhhhCCCCCCcEEEEEE-CCEEeeEEEecccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSR--SHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYR-GGEVVGNFVRLGEE  574 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~--~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk-~G~~~~~~vg~~~~  574 (612)
                      +.+|+|+||++||++|+.|.+.+..++.  ++.+..|+.|+++.........|.+.++||+++|+ +|+.+.+++|....
T Consensus        44 ~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G~~~~  123 (151)
T 3ph9_A           44 KKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRADIAGRYSN  123 (151)
T ss_dssp             TCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTTCCCSCTT
T ss_pred             CCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEEEeCCcCC
Confidence            3489999999999999999999987532  33345788887752222466889999999999999 99999999987222


Q ss_pred             ccCCCCHHHHHHHHH
Q psy12938        575 LGEGYFVEDVEAFLV  589 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~  589 (612)
                      -.--++.++++.+|.
T Consensus       124 ~~~~~~~~~~~~ll~  138 (151)
T 3ph9_A          124 RLYTYEPRDLPLLIE  138 (151)
T ss_dssp             STTCCCGGGHHHHHH
T ss_pred             cccccchhhHHHHHH
Confidence            111244455555554

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.09  E-value=1.7e-10  Score=114.07  Aligned_cols=83  Identities=13%  Similarity=0.303  Sum_probs=72.6

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      .++|+||++||++|+.|.+.|..+|++|    +.++|++|+.+..+ .+..+|.+.++||+++|++|+.+. +.|     
T Consensus       149 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~~~-~~g-----  221 (241)
T 3idv_A          149 IILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET-DLAKRFDVSGYPTLKIFRKGRPYD-YNG-----  221 (241)
T ss_dssp             EEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEE-CCS-----
T ss_pred             eEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCH-HHHHHcCCcccCEEEEEECCeEEE-ecC-----
Confidence            7999999999999999999999999886    45999999999776 788999999999999999998765 433     


Q ss_pred             cCCCCHHHHHHHHHHC
Q psy12938        576 GEGYFVEDVEAFLVEA  591 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~  591 (612)
                        ..+.++|..||.++
T Consensus       222 --~~~~~~l~~~l~~~  235 (241)
T 3idv_A          222 --PREKYGIVDYMIEQ  235 (241)
T ss_dssp             --CCSHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHhh
Confidence              34668999999865

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=1.4e-10  Score=103.46  Aligned_cols=85  Identities=11%  Similarity=0.133  Sum_probs=71.6

Q ss_pred             ceEEEEEeCCCChhhhhhHHHH---HHHHhhc-CCceEEEecCCC--chhchhhhCCCCCCcEEEEE-ECCEEeeEEEec
Q psy12938        499 ITVIAHLSSPSLPACRALNSSL---AELSRSH-TNVKFVSVPLGC--VGDHFSATFKTSGLPAMLAY-RGGEVVGNFVRL  571 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~-~~vkF~ki~~~~--~~d~~~~~~~i~~lPtllvy-k~G~~~~~~vg~  571 (612)
                      .+|+|.||++||++|+.+.+.|   +.+++.+ ..+.|++|+.+.  .. .+..+|.+.++||+++| ++|+.+.++.|.
T Consensus        28 k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~~~v~~~Pt~~~~d~~G~~~~~~~G~  106 (130)
T 2kuc_A           28 KLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGV-ELRKKYGVHAYPTLLFINSSGEVVYRLVGA  106 (130)
T ss_dssp             SCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHH-HHHHHTTCCSSCEEEEECTTSCEEEEEESC
T ss_pred             CeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchH-HHHHHcCCCCCCEEEEECCCCcEEEEecCC
Confidence            4799999999999999999999   7777665 368899999873  33 67899999999999999 899999998886


Q ss_pred             cccccCCCCHHHHHHHHHHC
Q psy12938        572 GEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       572 ~~~~g~~~~~~~lE~~L~~~  591 (612)
                      ..       .++|+.+|.++
T Consensus       107 ~~-------~~~l~~~l~~~  119 (130)
T 2kuc_A          107 ED-------APELLKKVKLG  119 (130)
T ss_dssp             CC-------HHHHHHHHHHH
T ss_pred             CC-------HHHHHHHHHHH
Confidence            43       37888888764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.08  E-value=2.5e-10  Score=131.62  Aligned_cols=99  Identities=32%  Similarity=0.493  Sum_probs=80.4

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeeccccc----
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA----  379 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~----  379 (612)
                      ..+.++|.|.|+..||||+|.|   |.+.+.  ++.|+||..|.+||+|+++|+|++||    |||.++.+++|..    
T Consensus        57 ~~~~~~v~l~k~~~glGf~i~g---g~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~  133 (721)
T 2xkx_A           57 EMEYEEITLERGNSGLGFSIAG---GTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEA  133 (721)
T ss_pred             CceEEEEEEEeCCCCCCEEEeC---CcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            3466789999999999999999   555432  46799999999999999999999999    8998887753311    


Q ss_pred             --------------C------------------------------CCCcccceEEEEeeccccccccCcceeccCC
Q psy12938        380 --------------D------------------------------AGLEKLGIFVKTITEAGAAARDGRIQVRRGP  411 (612)
Q Consensus       380 --------------~------------------------------~~~~~~~i~i~~i~~~~~a~~dg~l~~~~~~  411 (612)
                                    .                              +.++..|+||+.|.+|++|+++|+|+.||--
T Consensus       134 l~~~g~~v~l~v~R~~~~~~~~~~v~l~k~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~I  209 (721)
T 2xkx_A          134 LKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKI  209 (721)
T ss_pred             hhccccccceEEEecccccccceeeeeeeecCCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEE
Confidence                          0                              0122578999999999999999999999853

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.07  E-value=1.9e-10  Score=104.15  Aligned_cols=85  Identities=13%  Similarity=0.204  Sum_probs=70.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCC--CcEEEEEEC--CEEeeEEEecc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSG--LPAMLAYRG--GEVVGNFVRLG  572 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~--lPtllvyk~--G~~~~~~vg~~  572 (612)
                      ..+|+|.||++ |.+|+.|.+.|+++|++|. .++|+++|++..+ .++..|.++.  +|||++|++  |+. ..+.   
T Consensus        23 ~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~-~~a~~~gi~~~~iPtl~i~~~~~g~~-~~~~---   96 (133)
T 2djk_A           23 GIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFG-AHAGNLNLKTDKFPAFAIQEVAKNQK-FPFD---   96 (133)
T ss_dssp             TSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG-GGTTTTTCCSSSSSEEEEECTTTCCB-CCCC---
T ss_pred             CCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhH-HHHHHcCCCcccCCEEEEEecCcCcc-cCCC---
Confidence            45799999999 7999999999999999995 6999999999887 6889999999  999999998  665 3333   


Q ss_pred             ccccCCCCHHHHHHHHHH
Q psy12938        573 EELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       573 ~~~g~~~~~~~lE~~L~~  590 (612)
                        ....++.+.|+.||.+
T Consensus        97 --~~g~~~~~~l~~fi~~  112 (133)
T 2djk_A           97 --QEKEITFEAIKAFVDD  112 (133)
T ss_dssp             --SSSCCCHHHHHHHHHH
T ss_pred             --CccccCHHHHHHHHHH
Confidence              0123566889998875

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.06  E-value=2.1e-10  Score=100.20  Aligned_cols=78  Identities=12%  Similarity=0.172  Sum_probs=67.3

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      ..+|+.||++||++|+.+.+.|+++++++. +.|.+||++..+ .+.++|.++ +|+|++|+||+.+.  .|       .
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~~vDId~d~-~l~~~ygv~-VP~l~~~~dG~~v~--~g-------~   96 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSW-FELEVINIDGNE-HLTRLYNDR-VPVLFAVNEDKELC--HY-------F   96 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCEEEETTTCH-HHHHHSTTS-CSEEEETTTTEEEE--CS-------S
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEEEEECCCCH-HHHHHhCCC-CceEEEEECCEEEE--ec-------C
Confidence            367999999999999999999999999986 999999999776 788899997 99999999999872  22       2


Q ss_pred             CCHHHHHHHH
Q psy12938        579 YFVEDVEAFL  588 (612)
Q Consensus       579 ~~~~~lE~~L  588 (612)
                      |..+.|+++|
T Consensus        97 ~~~~~L~~~L  106 (107)
T 2fgx_A           97 LDSDVIGAYL  106 (107)
T ss_dssp             CCCHHHHHHH
T ss_pred             CCHHHHHHHh
Confidence            5558888887

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.05  E-value=6.5e-10  Score=99.22  Aligned_cols=85  Identities=18%  Similarity=0.264  Sum_probs=73.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC----------------------chhchhhhCCCCCCcE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC----------------------VGDHFSATFKTSGLPA  555 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~----------------------~~d~~~~~~~i~~lPt  555 (612)
                      +.+++|+||++||+.|+.+.+.|.+++++|++++|+.|+.+.                      .. .+...|.+.++|+
T Consensus        24 ~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~P~  102 (136)
T 1lu4_A           24 GKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADG-VIWARYNVPWQPA  102 (136)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTS-HHHHHTTCCSSSE
T ss_pred             CCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCch-hHHHhcCCCCCCE
Confidence            458999999999999999999999999999999999998765                      33 5778899999999


Q ss_pred             EEEE-ECCEEeeEEE---eccccccCCCCHHHHHHHHHHC
Q psy12938        556 MLAY-RGGEVVGNFV---RLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       556 llvy-k~G~~~~~~v---g~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +++| ++|+++ .+.   |.       .+.++|+.+|.+.
T Consensus       103 ~~lid~~G~i~-~~~~~~g~-------~~~~~l~~~l~~l  134 (136)
T 1lu4_A          103 FVFYRADGTST-FVNNPTAA-------MSQDELSGRVAAL  134 (136)
T ss_dssp             EEEECTTSCEE-EECCSSSC-------CCHHHHHHHHHHC
T ss_pred             EEEECCCCcEE-EEEcCCCc-------cCHHHHHHHHHHH
Confidence            9999 799998 777   44       3458898888763

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.62  E-value=2.1e-11  Score=109.17  Aligned_cols=85  Identities=18%  Similarity=0.275  Sum_probs=70.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHH---HHHHhhcCC-ceEEEecCC--CchhchhhhCCCCCCcEEEEE--ECCEE--eeE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSL---AELSRSHTN-VKFVSVPLG--CVGDHFSATFKTSGLPAMLAY--RGGEV--VGN  567 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~~-vkF~ki~~~--~~~d~~~~~~~i~~lPtllvy--k~G~~--~~~  567 (612)
                      ..+|+|+||++||++|+.|.+.|   +.+++.+.. +.|+.|+.+  ... .+...|.+.++||+++|  ++|+.  +.+
T Consensus        19 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~   97 (130)
T 2lst_A           19 GRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQ-ELARRYRVPGTPTFVFLVPKAGAWEEVGR   97 (130)
Confidence            45899999999999999999999   999998865 999999884  333 67799999999999999  89999  888


Q ss_pred             EEeccccccCCCCHHHHHHHHHH
Q psy12938        568 FVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       568 ~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.|....       +.|..+|.+
T Consensus        98 ~~G~~~~-------~~l~~~l~~  113 (130)
T 2lst_A           98 LFGSRPR-------AEFLKELRQ  113 (130)
Confidence            8886443       455555543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.04  E-value=3.9e-10  Score=120.34  Aligned_cols=85  Identities=13%  Similarity=0.205  Sum_probs=72.8

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcC-------CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeE-EEe
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHT-------NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGN-FVR  570 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-------~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~-~vg  570 (612)
                      .+|+|+||++||++|+.|.+.++++|+++.       .++|++||.+... .+..+|.+.++||+++|++|+.+.+ +.|
T Consensus        23 ~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~-~l~~~~~v~~~Pt~~~f~~G~~~~~~~~G  101 (382)
T 2r2j_A           23 DVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS-DIAQRYRISKYPTLKLFRNGMMMKREYRG  101 (382)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH-HHHHHTTCCEESEEEEEETTEEEEEECCS
T ss_pred             CeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccH-HHHHhcCCCcCCEEEEEeCCcEeeeeecC
Confidence            489999999999999999999999998872       3999999999776 7889999999999999999998763 544


Q ss_pred             ccccccCCCCHHHHHHHHHHC
Q psy12938        571 LGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       571 ~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .       .+.+.|..||.++
T Consensus       102 ~-------~~~~~l~~~i~~~  115 (382)
T 2r2j_A          102 Q-------RSVKALADYIRQQ  115 (382)
T ss_dssp             C-------CSHHHHHHHHHHH
T ss_pred             c-------chHHHHHHHHHHh
Confidence            3       3458888888764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.04  E-value=3.8e-10  Score=91.20  Aligned_cols=74  Identities=14%  Similarity=0.161  Sum_probs=61.6

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY  579 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~  579 (612)
                      +.|+||++||++|+.+.+.|++++++|. .++|++|+   .+ .+..+|++.++||+++  +|+.+..  |..      .
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~~-~~~~~~~v~~~Pt~~~--~G~~~~~--G~~------~   67 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---EM-DQILEAGLTALPGLAV--DGELKIM--GRV------A   67 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SH-HHHHHHTCSSSSCEEE--TTEEEEC--SSC------C
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---CH-HHHHHCCCCcCCEEEE--CCEEEEc--CCC------C
Confidence            4689999999999999999999999997 79999998   22 6789999999999999  9998764  431      1


Q ss_pred             CHHHHHHHH
Q psy12938        580 FVEDVEAFL  588 (612)
Q Consensus       580 ~~~~lE~~L  588 (612)
                      +.++|+.+|
T Consensus        68 ~~~~l~~~l   76 (77)
T 1ilo_A           68 SKEEIKKIL   76 (77)
T ss_dssp             CHHHHHHHC
T ss_pred             CHHHHHHHh
Confidence            457777765

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.03  E-value=9.5e-10  Score=107.84  Aligned_cols=74  Identities=14%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             CCceEEEEEeCC-CChhhhhhHHHHHHHHhhcCCceEEEecCCC--chhchhhhCCCCCCcEEEEEECCEEe-eEEEec
Q psy12938        497 RHITVIAHLSSP-SLPACRALNSSLAELSRSHTNVKFVSVPLGC--VGDHFSATFKTSGLPAMLAYRGGEVV-GNFVRL  571 (612)
Q Consensus       497 ~~~~Vvvhfy~~-~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~--~~d~~~~~~~i~~lPtllvyk~G~~~-~~~vg~  571 (612)
                      ....+++.||++ ||++|+.|.+.|++||+.++.++|++||.+.  .+ .++.+|.+.++||+++|++|+.. .++.|.
T Consensus        21 ~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~~~~-~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~   98 (226)
T 1a8l_A           21 VNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGK-ELAKRYRIDRAPATTITQDGKDFGVRYFGL   98 (226)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHH-HHHHHTTCCSSSEEEEEETTBCCSEEEESC
T ss_pred             CCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCcccH-HHHHHcCCCcCceEEEEcCCceeeEEEecc
Confidence            344678999999 9999999999999999888899999999987  65 78899999999999999999875 667775

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.02  E-value=2e-09  Score=104.32  Aligned_cols=96  Identities=25%  Similarity=0.368  Sum_probs=79.7

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCCC-----C----ch--------------------------
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP-----V----NS--------------------------   45 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~~-----~----~~--------------------------   45 (612)
                      +||+|++|||.++.+.+|.+++.+|+.++..|.|+|.|+.++     .    ..                          
T Consensus        54 ~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~g~~~~~~~~~v~l~~~~~~lG~~l~~g~~~~~~~  133 (200)
T 2qt5_A           54 VGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNK  133 (200)
T ss_dssp             TTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEECCCCCCCCSSEEEEEEEEEEECBTTBCSEEEEEECCSSTTT
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEeccCCCcccCCCccceeEEEEEEecCCCCeEEEEECCCCCCccC
Confidence            599999999999999999999999999999999999875421     0    00                          


Q ss_pred             h----hHHh-------hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         46 E----VAQL-------IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        46 ~----i~~i-------~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      .    |..+       ..|+|++||+|++|||..+.+++++++..+|+..+..|.|+|.|..
T Consensus       134 ~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  195 (200)
T 2qt5_A          134 SRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDV  195 (200)
T ss_dssp             CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred             CCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            0    1111       2235999999999999999999999999999998889999999864

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.02  E-value=1.5e-10  Score=112.55  Aligned_cols=99  Identities=16%  Similarity=0.200  Sum_probs=78.1

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeee--ccccc------
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG--MGVGA------  379 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g--~~~~~------  379 (612)
                      +.+.|+|.|+..||||+|.|   |.+...+ .|+||..|.+||+|+++|+|+.||    |||.++.+  ++|..      
T Consensus        18 ~~~~v~~~~~~~~lG~~i~~---g~~~~~~-~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   93 (206)
T 3r0h_A           18 KKILIELKVEKKPMGVIVCG---GKNNHVT-TGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFH   93 (206)
T ss_dssp             SCEEEEEECTTSCCCEEEEC---CSSSSCC-SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHH
T ss_pred             CEEEEEEEeCCCCcCEEEec---ccCCCCC-CCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHH
Confidence            45669999999999999999   6654332 589999999999999999999999    89998887  43210      


Q ss_pred             ----C-----------------------CC---------CcccceEEEEeeccccccccCcceeccCCccc
Q psy12938        380 ----D-----------------------AG---------LEKLGIFVKTITEAGAAARDGRIQVRRGPKGV  414 (612)
Q Consensus       380 ----~-----------------------~~---------~~~~~i~i~~i~~~~~a~~dg~l~~~~~~~gv  414 (612)
                          .                       ..         ....|+||.+|.+|++|++.|+|+.||--..|
T Consensus        94 ~~~~~~v~l~v~R~~~~~~~~~~v~l~~~~~~~lG~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~V  164 (206)
T 3r0h_A           94 TTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGCTIADLIQGQYPEIDSKLQRGDIITKF  164 (206)
T ss_dssp             SCCSSEEEEEEECCSSCCEEEEEEEEECCTTCCCCEEEEECSSCEEEEEECTTSCHHHHHHCCTTCEEEEE
T ss_pred             hcCCCceEEEEEecccCCCcEEEEEEecCCCCccCeEEEcCCceEEEEEECCCChHHHcCCCCCCCEEEEE
Confidence                0                       00         11357899999999999999999999964433

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.00  E-value=2e-10  Score=108.07  Aligned_cols=86  Identities=12%  Similarity=0.196  Sum_probs=65.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHH---HHHHhhcC-CceEEEecCCCchhch--------------------------hhh
Q psy12938        498 HITVIAHLSSPSLPACRALNSSL---AELSRSHT-NVKFVSVPLGCVGDHF--------------------------SAT  547 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~-~vkF~ki~~~~~~d~~--------------------------~~~  547 (612)
                      +.+|+|+||++||++|+.|.+.+   ..+++.+. ++.|++|+.+... .+                          ...
T Consensus        47 gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (172)
T 3f9u_A           47 NKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKT-PLTEPVKIMENGTERTLRTVGDKWSYLQRVK  125 (172)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCC-EEEEEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             CCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCccc-ccchhhhhhhcchhhhhhhhhhhhhHHHHHH
Confidence            45899999999999999985444   55555454 5899999987542 22                          578


Q ss_pred             CCCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        548 FKTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       548 ~~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      |.+.++||+++| ++|+.+.++.|...      +.+++..+|.+
T Consensus       126 ~~v~~~Pt~~lid~~G~~~~~~~G~~~------~~~~l~~~l~~  163 (172)
T 3f9u_A          126 FGANAQPFYVLIDNEGNPLNKSYAYDE------DISKYINFLQT  163 (172)
T ss_dssp             HSCCCSSEEEEECTTSCBSSCCBCSCC------CHHHHHHHHHH
T ss_pred             cCCCCcceEEEECCCCCEEeeccCCCC------CHHHHHHHHHH
Confidence            999999999999 99999998887743      13566666543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.99  E-value=1.5e-09  Score=98.10  Aligned_cols=85  Identities=14%  Similarity=0.201  Sum_probs=71.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCC---------------------------CchhchhhhCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLG---------------------------CVGDHFSATFK  549 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~---------------------------~~~d~~~~~~~  549 (612)
                      +.+++|.||++||+.|+.+.+.|.+++++|++ ++|+.|+.+                           ... .+...|.
T Consensus        29 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~  107 (148)
T 2b5x_A           29 EKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDH-ALTDAFE  107 (148)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSC-HHHHHTC
T ss_pred             CCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCch-hHHHHhC
Confidence            45899999999999999999999999999976 999999853                           222 5678999


Q ss_pred             CCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        550 TSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       550 i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.++|+++++ ++|+.+..+.|...       .++|+.+|.+
T Consensus       108 v~~~P~~~lid~~G~i~~~~~g~~~-------~~~l~~~l~~  142 (148)
T 2b5x_A          108 NEYVPAYYVFDKTGQLRHFQAGGSG-------MKMLEKRVNR  142 (148)
T ss_dssp             CCCSSEEEEECTTCBEEEEEESCST-------THHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcEEEEecCCCC-------HHHHHHHHHH
Confidence            9999999999 89999998888632       3667777654

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.99  E-value=1e-09  Score=98.82  Aligned_cols=84  Identities=18%  Similarity=0.304  Sum_probs=72.3

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCC-------------------------chhchhhhCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGC-------------------------VGDHFSATFK  549 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~-------------------------~~d~~~~~~~  549 (612)
                      ++.+++|+||++||+.|+.+.+.|.+++++|+  ++.|+.|+.+.                         .. .+...|.
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~  111 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKG-ELMKEYH  111 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSS-HHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCch-hHHHhcC
Confidence            45689999999999999999999999999997  79999998742                         22 5778999


Q ss_pred             CCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938        550 TSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       550 i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                      +..+|+++++ ++|+++..+.|...       .++|+.+|
T Consensus       112 v~~~P~~~lid~~G~i~~~~~g~~~-------~~~l~~~l  144 (145)
T 3erw_A          112 IITIPTSFLLNEKGEIEKTKIGPMT-------AEQLKEWT  144 (145)
T ss_dssp             CCEESEEEEECTTCCEEEEEESCCC-------HHHHHHHH
T ss_pred             cCccCeEEEEcCCCcEEEEEcCCcC-------HHHHHHhh
Confidence            9999999999 99999999888643       37787776

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.99  E-value=1.8e-09  Score=96.06  Aligned_cols=84  Identities=19%  Similarity=0.207  Sum_probs=71.5

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC-----------------------chhchhhhCCCCCCc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC-----------------------VGDHFSATFKTSGLP  554 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~-----------------------~~d~~~~~~~i~~lP  554 (612)
                      +.+++++||++||+.|+.+.+.|.+++++|++++|+.|+.+.                       .. .+...|.+.++|
T Consensus        25 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~~P  103 (136)
T 1zzo_A           25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDG-SVWANFGVTQQP  103 (136)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTC-HHHHHTTCCSSS
T ss_pred             CCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCc-HHHHHcCCCCCc
Confidence            458999999999999999999999999999999999998742                       22 567899999999


Q ss_pred             EEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        555 AMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       555 tllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++++| ++|+.+ .+.|...       .++|+.+|.+
T Consensus       104 ~~~~id~~g~i~-~~~g~~~-------~~~l~~~l~~  132 (136)
T 1zzo_A          104 AYAFVDPHGNVD-VVRGRMS-------QDELTRRVTA  132 (136)
T ss_dssp             EEEEECTTCCEE-EEESCCC-------HHHHHHHHHH
T ss_pred             eEEEECCCCCEE-EEecCCC-------HHHHHHHHHH
Confidence            99999 699998 8877633       4788888765

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.98  E-value=8.1e-10  Score=122.00  Aligned_cols=86  Identities=13%  Similarity=0.299  Sum_probs=73.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE--eeEEEeccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV--VGNFVRLGE  573 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~--~~~~vg~~~  573 (612)
                      ..+++|+||++||++|+.|.+.++++|+++.  +++|++||.+..+ .+..+|.+.++||+++|++|+.  +..+.|.  
T Consensus        31 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~--  107 (504)
T 2b5e_A           31 HDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ-DLCMEHNIPGFPSLKIFKNSDVNNSIDYEGP--  107 (504)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTCTTCEEECCSC--
T ss_pred             CCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCH-HHHHhcCCCcCCEEEEEeCCccccceeecCC--
Confidence            4589999999999999999999999999997  4999999999776 7889999999999999999986  5555553  


Q ss_pred             cccCCCCHHHHHHHHHHC
Q psy12938        574 ELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~~~  591 (612)
                           .+.+.|..||.++
T Consensus       108 -----~~~~~l~~~l~~~  120 (504)
T 2b5e_A          108 -----RTAEAIVQFMIKQ  120 (504)
T ss_dssp             -----CSHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHh
Confidence                 3457788887654

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.98  E-value=4.4e-10  Score=95.58  Aligned_cols=61  Identities=23%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .+...|+|.|...+|||+|.+.        +...+||++|.+||+|+++|+|++||    |||.++.|++|.+
T Consensus         4 g~~k~V~l~K~~~~LG~tI~~~--------g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~e   68 (95)
T 3gge_A            4 GIEKEVNVYKSEDSLGLTITDN--------GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYD   68 (95)
T ss_dssp             EEEEEEEEECCSSCCCEEEECS--------SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHH
T ss_pred             CeEEEEEEEECCCCceEEEEcC--------CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHH
Confidence            3556799999999999999982        12358999999999999999999999    9999999998854

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.98  E-value=8e-10  Score=102.53  Aligned_cols=86  Identities=12%  Similarity=0.159  Sum_probs=70.0

Q ss_pred             ceEEEEEe-CCCChhhhhhHHHH---HHHHhhc-CCceEEEecCCCch----------hchhhhCCCCCCcEEEEE-ECC
Q psy12938        499 ITVIAHLS-SPSLPACRALNSSL---AELSRSH-TNVKFVSVPLGCVG----------DHFSATFKTSGLPAMLAY-RGG  562 (612)
Q Consensus       499 ~~Vvvhfy-~~~~~~C~~m~~~l---~~LA~~~-~~vkF~ki~~~~~~----------d~~~~~~~i~~lPtllvy-k~G  562 (612)
                      .+|+|.|| ++||++|+.+.+.|   .++++.+ .++.|++|+.+...          ..+...|.+.++||+++| ++|
T Consensus        48 k~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G  127 (154)
T 2ju5_A           48 KPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEG  127 (154)
T ss_dssp             CCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEEEEECTTC
T ss_pred             CeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEEEEEcCCC
Confidence            47999999 99999999999999   7887766 57999999987531          256789999999999999 899


Q ss_pred             EEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        563 EVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       563 ~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.+.++ |+.     ....+.+..+|.+
T Consensus       128 ~~~~~~-G~~-----~~~~~~l~~~l~~  149 (154)
T 2ju5_A          128 KQLARM-GFE-----PGGGAAYVSKVKS  149 (154)
T ss_dssp             CEEEEE-CCC-----TTCHHHHHHHHHH
T ss_pred             CEEEEe-cCC-----CCCHHHHHHHHHH
Confidence            999988 874     1234667777654

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.97  E-value=7.1e-10  Score=96.66  Aligned_cols=73  Identities=8%  Similarity=0.084  Sum_probs=57.6

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC----CchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG----CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~----~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      .+||.||++||++|+.|.+.|+++|++|+   ++.++.+    ..+ .+..+|.+.++||+++  +|+.   +.|..   
T Consensus        14 ~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v~~~~~~~~~~~~-~l~~~~~V~~~PT~~i--~G~~---~~G~~---   81 (106)
T 3kp8_A           14 IGGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQA-QECTEAGITSYPTWII--NGRT---YTGVR---   81 (106)
T ss_dssp             HTCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCTTCTTSCCC-HHHHHTTCCSSSEEEE--TTEE---EESCC---
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHhCC---EEEEecccccchhH-HHHHHcCCeEeCEEEE--CCEE---ecCCC---
Confidence            46899999999999999999999998886   6666643    233 6789999999999877  9974   55543   


Q ss_pred             cCCCCHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFL  588 (612)
Q Consensus       576 g~~~~~~~lE~~L  588 (612)
                          +.++|..++
T Consensus        82 ----~~~~l~~~~   90 (106)
T 3kp8_A           82 ----SLEALAVAS   90 (106)
T ss_dssp             ----CHHHHHHHH
T ss_pred             ----CHHHHHHHh
Confidence                347777776

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.96  E-value=3.8e-09  Score=102.31  Aligned_cols=44  Identities=27%  Similarity=0.339  Sum_probs=40.9

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      .|+|++||+|++|||.++.+++|.+++.+++.++..|.|+|.|.
T Consensus        49 aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   92 (200)
T 2qt5_A           49 SDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYE   92 (200)
T ss_dssp             TTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEE
T ss_pred             cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEecc
Confidence            34799999999999999999999999999999999999999875

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.96  E-value=6.1e-10  Score=93.69  Aligned_cols=73  Identities=15%  Similarity=0.206  Sum_probs=62.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCH
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFV  581 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~  581 (612)
                      |+.||++||++|+.+.+.|++++.+|    |.+||++..+ .+.++|.++ +|++++ +||+.++   |       .|..
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~----~~~vdid~~~-~l~~~~g~~-vPtl~~-~~G~~v~---g-------~~~~   65 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA----FFSVFIDDDA-ALESAYGLR-VPVLRD-PMGRELD---W-------PFDA   65 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC----EEEEECTTCH-HHHHHHTTT-CSEEEC-TTCCEEE---S-------CCCH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh----eEEEECCCCH-HHHHHhCCC-cCeEEE-ECCEEEe---C-------CCCH
Confidence            67899999999999999999998776    7899999776 788999998 999999 9999874   2       2566


Q ss_pred             HHHHHHHHHC
Q psy12938        582 EDVEAFLVEA  591 (612)
Q Consensus       582 ~~lE~~L~~~  591 (612)
                      +.|+++|.++
T Consensus        66 ~~L~~~l~~~   75 (87)
T 1ttz_A           66 PRLRAWLDAA   75 (87)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHH
Confidence            8999999754

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.95  E-value=8.2e-10  Score=116.31  Aligned_cols=92  Identities=10%  Similarity=0.107  Sum_probs=72.2

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHH-------HHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEE
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSS-------LAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAML  557 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~-------l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtll  557 (612)
                      .|.+.+.+   ..+|+|+|||+||+ |+.+.|.       ++++|+.+.  .++|++||.+..+ .+..+|.+.++||++
T Consensus        20 ~f~~~i~~---~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~-~l~~~~~v~~~Pt~~   94 (350)
T 1sji_A           20 NFKQVLKK---YDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEA-KLAKKLGFDEEGSLY   94 (350)
T ss_dssp             HHHHHHTT---CSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTH-HHHHHHTCCSTTEEE
T ss_pred             HHHHHHhh---CCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCH-HHHHhcCCCccceEE
Confidence            34444532   45899999999999 9988777       999999875  5999999999776 788999999999999


Q ss_pred             EEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        558 AYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       558 vyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +|++|+ ...+.|.       .+.+.|..||.++
T Consensus        95 ~~~~g~-~~~~~G~-------~~~~~l~~~i~~~  120 (350)
T 1sji_A           95 VLKGDR-TIEFDGE-------FAADVLVEFLLDL  120 (350)
T ss_dssp             EEETTE-EEEECSC-------CCHHHHHHHHHTT
T ss_pred             EEECCc-EEEecCC-------CCHHHHHHHHHHh
Confidence            999999 3445553       3446677776543

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.95  E-value=7.7e-10  Score=96.99  Aligned_cols=88  Identities=17%  Similarity=0.230  Sum_probs=66.3

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----hchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      .|++ ||++||++|+.+.+.|+.++.+|   .|+.|+.+...    ..+...|.+..+||+  |.+|+.++.+.|+.+..
T Consensus        21 ~vv~-f~a~~C~~C~~~~~~l~~~~~~~---~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~--~~~g~~v~~~~~~~~~~   94 (116)
T 2e7p_A           21 PVVV-FSKTYCGYCNRVKQLLTQVGASY---KVVELDELSDGSQLQSALAHWTGRGTVPNV--FIGGKQIGGCDTVVEKH   94 (116)
T ss_dssp             SEEE-EECTTCHHHHHHHHHHHHHTCCC---EEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEECHHHHHHHH
T ss_pred             CEEE-EECCCChhHHHHHHHHHHcCCCe---EEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEECChHHHHHHH
Confidence            4666 99999999999999999997765   78888876431    257788999999999  77999988776664221


Q ss_pred             cCCCCHHHHHHHHHHCCcccCC
Q psy12938        576 GEGYFVEDVEAFLVEAGLLRAG  597 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~g~l~~~  597 (612)
                          ..+.|+.+|.+.|++...
T Consensus        95 ----~~~~l~~~l~~~g~~~k~  112 (116)
T 2e7p_A           95 ----QRNELLPLLQDAAATAKT  112 (116)
T ss_dssp             ----HTTCHHHHHHHTTC----
T ss_pred             ----hCChHHHHHHHccccccc
Confidence                125699999999987543

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.94  E-value=1.7e-10  Score=108.37  Aligned_cols=93  Identities=19%  Similarity=0.206  Sum_probs=71.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCC--CCCcEEEEE-ECCEEeeEEEeccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKT--SGLPAMLAY-RGGEVVGNFVRLGE  573 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i--~~lPtllvy-k~G~~~~~~vg~~~  573 (612)
                      ..+|+|+||++||++|+.+.+.|.++++.+. .++|+.|+.+..++.+...|.+  ..+||+++| ++|+++.+++|...
T Consensus        46 ~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~~  125 (164)
T 1sen_A           46 GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENG  125 (164)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTTS
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEEEEeCCCC
Confidence            3479999999999999999999999887664 5889999887654225678888  569999999 89999999888633


Q ss_pred             ccc---CCCCHHHHHHHHHH
Q psy12938        574 ELG---EGYFVEDVEAFLVE  590 (612)
Q Consensus       574 ~~g---~~~~~~~lE~~L~~  590 (612)
                      ..-   -..+.+.|..+|.+
T Consensus       126 ~~~~~~~~~~~~~l~~~l~~  145 (164)
T 1sen_A          126 NPSYKYFYVSAEQVVQGMKE  145 (164)
T ss_dssp             CTTSTTCCCSHHHHHHHHHH
T ss_pred             ccchhcccCCHHHHHHHHHH
Confidence            110   02455777777654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.94  E-value=1.4e-09  Score=107.07  Aligned_cols=81  Identities=11%  Similarity=0.165  Sum_probs=69.3

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      .+++++||++||++|+.+.+.|+.+|.+|++++|++|+.+..+ .+..+|++.++||+++  +|+ +.++.|...     
T Consensus       137 ~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~--~G~-~~~~~G~~~-----  207 (229)
T 2ywm_A          137 PIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQ-DLAEQFQVVGVPKIVI--NKG-VAEFVGAQP-----  207 (229)
T ss_dssp             CEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCH-HHHHHTTCCSSSEEEE--GGG-TEEEESCCC-----
T ss_pred             CeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCH-HHHHHcCCcccCEEEE--CCE-EEEeeCCCC-----
Confidence            3568899999999999999999999999999999999998765 7889999999999998  888 666777533     


Q ss_pred             CCHHHHHHHHHH
Q psy12938        579 YFVEDVEAFLVE  590 (612)
Q Consensus       579 ~~~~~lE~~L~~  590 (612)
                        .++|..+|.+
T Consensus       208 --~~~l~~~l~~  217 (229)
T 2ywm_A          208 --ENAFLGYIMA  217 (229)
T ss_dssp             --HHHHHHHHHH
T ss_pred             --HHHHHHHHHH
Confidence              3677777754

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=98.93  E-value=1.2e-09  Score=119.77  Aligned_cols=88  Identities=13%  Similarity=0.238  Sum_probs=74.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE--eeEEEec
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV--VGNFVRL  571 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~--~~~~vg~  571 (612)
                      ....|+|+||++||++|+.|.+.|++|+++|.   .+.|++||++..  .+...|.+.++||+++|++|..  ..++.|.
T Consensus       369 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~--~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G~  446 (481)
T 3f8u_A          369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN--DVPSPYEVRGFPTIYFSPANKKLNPKKYEGG  446 (481)
T ss_dssp             TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS--CCCTTCCCCSSSEEEEECTTCTTSCEECCSC
T ss_pred             CCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch--hhHhhCCCcccCEEEEEeCCCeEeeeEeCCC
Confidence            35589999999999999999999999999986   499999999876  5778999999999999999986  3434332


Q ss_pred             cccccCCCCHHHHHHHHHHCCc
Q psy12938        572 GEELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       572 ~~~~g~~~~~~~lE~~L~~~g~  593 (612)
                             .+.++|..||.++.-
T Consensus       447 -------~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          447 -------RELSDFISYLQREAT  461 (481)
T ss_dssp             -------CSHHHHHHHHHHHCS
T ss_pred             -------CCHHHHHHHHHHhcC
Confidence                   466999999998865

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.93  E-value=9.2e-10  Score=95.96  Aligned_cols=70  Identities=64%  Similarity=0.958  Sum_probs=61.7

Q ss_pred             cceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        309 EKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       309 ~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ...++++|.|.|+..||||+|.|++.+.+....+.|+||..|.+||+|++.|+|++||    |||.++.++++.
T Consensus         6 ~~~~~~~v~l~k~~~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~   79 (107)
T 1wf8_A            6 SGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQN   79 (107)
T ss_dssp             CCEEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHH
T ss_pred             CCceEEEEEEEECCCcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            4567889999999999999999966666666567899999999999999999999999    899999987663

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.93  E-value=2.5e-09  Score=107.04  Aligned_cols=81  Identities=17%  Similarity=0.211  Sum_probs=69.0

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhc-----CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSH-----TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE  573 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-----~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~  573 (612)
                      ..+|+.||++||++|+.+.+.|+.||.+|     +++.|.+||++..+ .+..+|.+.++||+++  ||+.+  +.|.. 
T Consensus       139 ~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~V~~vPt~~i--~G~~~--~~G~~-  212 (243)
T 2hls_A          139 RVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP-DIADKYGVMSVPSIAI--NGYLV--FVGVP-  212 (243)
T ss_dssp             CEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCH-HHHHHTTCCSSSEEEE--TTEEE--EESCC-
T ss_pred             CcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCH-HHHHHcCCeeeCeEEE--CCEEE--EeCCC-
Confidence            36789999999999999999999999998     78999999999776 6778999999999988  99864  55542 


Q ss_pred             cccCCCCHHHHHHHHHHC
Q psy12938        574 ELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~~~  591 (612)
                            +.++|..+|.+.
T Consensus       213 ------~~~~l~~~l~~~  224 (243)
T 2hls_A          213 ------YEEDFLDYVKSA  224 (243)
T ss_dssp             ------CHHHHHHHHHHH
T ss_pred             ------CHHHHHHHHHHH
Confidence                  347888888754

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.92  E-value=3.3e-09  Score=97.19  Aligned_cols=85  Identities=22%  Similarity=0.247  Sum_probs=73.7

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecC---------------------------CCchhchhhhCCCC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPL---------------------------GCVGDHFSATFKTS  551 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~---------------------------~~~~d~~~~~~~i~  551 (612)
                      .+++|.||++||+.|+.+.+.|.+++++| ++.|+.|+.                           +... .+...|.+.
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~v~  108 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPH-EVAARFKVL  108 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHH-HHHTTSSBC
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchH-HHHHHhCCC
Confidence            58999999999999999999999999999 999999988                           2332 567899999


Q ss_pred             CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        552 GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       552 ~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      .+|+++++ ++|+++..+.|..       +.++|+.+|.++.
T Consensus       109 ~~P~~~lid~~G~i~~~~~g~~-------~~~~l~~~l~~~~  143 (154)
T 3ia1_A          109 GQPWTFVVDREGKVVALFAGRA-------GREALLDALLLAG  143 (154)
T ss_dssp             SSCEEEEECTTSEEEEEEESBC-------CHHHHHHHHHHTT
T ss_pred             cccEEEEECCCCCEEEEEcCCC-------CHHHHHHHHHhcc
Confidence            99997777 8999999998763       4589999998874

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.92  E-value=3.7e-09  Score=96.61  Aligned_cols=87  Identities=15%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------hchhhhCCCCCCc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------DHFSATFKTSGLP  554 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------d~~~~~~~i~~lP  554 (612)
                      +.++||.||++||+.|+.+.+.|..++++|+  +++|+.|+.+..+                     ..+...|.+.++|
T Consensus        26 gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  105 (151)
T 2f9s_A           26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP  105 (151)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSSC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCCC
Confidence            4589999999999999999999999999986  4999999875421                     1567889999999


Q ss_pred             EEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        555 AMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       555 tllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +++++ ++|+++..+.|..       +.++|+.+|.+.
T Consensus       106 ~~~lid~~G~i~~~~~G~~-------~~~~l~~~l~~l  136 (151)
T 2f9s_A          106 TTFLINPEGKVVKVVTGTM-------TESMIHDYMNLI  136 (151)
T ss_dssp             EEEEECTTSEEEEEEESCC-------CHHHHHHHHHHH
T ss_pred             eEEEECCCCcEEEEEeCCC-------CHHHHHHHHHHH
Confidence            99988 8999999888763       448888888753

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.91  E-value=2.2e-09  Score=114.04  Aligned_cols=85  Identities=11%  Similarity=0.104  Sum_probs=67.9

Q ss_pred             CceEEEEEeCCCChhhhhhH------HHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEE
Q psy12938        498 HITVIAHLSSPSLPACRALN------SSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFV  569 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~------~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~v  569 (612)
                      ..+|+|+|||+||++|+...      +.++.+|..+.  .++|++||++..+ .++.+|.+.++|||++|++|+.+ .+.
T Consensus        30 ~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~-~l~~~~~V~~~PTl~~f~~G~~~-~y~  107 (367)
T 3us3_A           30 YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDA-AVAKKLGLTEEDSIYVFKEDEVI-EYD  107 (367)
T ss_dssp             CSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTH-HHHHHHTCCSTTEEEEEETTEEE-ECC
T ss_pred             CCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccH-HHHHHcCCCcCceEEEEECCcEE-EeC
Confidence            34899999999999975443      68899998874  5999999999876 78899999999999999999874 344


Q ss_pred             eccccccCCCCHHHHHHHHHHC
Q psy12938        570 RLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       570 g~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      |.       .+.+.|..||.++
T Consensus       108 G~-------~~~~~i~~~i~~~  122 (367)
T 3us3_A          108 GE-------FSADTLVEFLLDV  122 (367)
T ss_dssp             SC-------CSHHHHHHHHHHH
T ss_pred             CC-------CCHHHHHHHHHHh
Confidence            32       3457777777654

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=98.91  E-value=7.8e-10  Score=122.15  Aligned_cols=86  Identities=17%  Similarity=0.279  Sum_probs=71.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE--eeEEEec
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV--VGNFVRL  571 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~--~~~~vg~  571 (612)
                      ..+|+|+||++||++|+.|.+.|++||++|+    .+.|+++|.+...  +.. |.+.++||+++|++|+.  ...+.|.
T Consensus       376 ~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~--~~~-~~v~~~Pt~~~~~~G~~~~~~~~~G~  452 (504)
T 2b5e_A          376 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND--VRG-VVIEGYPTIVLYPGGKKSESVVYQGS  452 (504)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC--CSS-CCCSSSSEEEEECCTTSCCCCBCCSC
T ss_pred             CCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccc--ccc-CCceecCeEEEEeCCceecceEecCC
Confidence            4579999999999999999999999999886    7999999988653  334 99999999999999976  4444443


Q ss_pred             cccccCCCCHHHHHHHHHHCCc
Q psy12938        572 GEELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       572 ~~~~g~~~~~~~lE~~L~~~g~  593 (612)
                             .+.++|..||.+++-
T Consensus       453 -------~~~~~l~~~i~~~~~  467 (504)
T 2b5e_A          453 -------RSLDSLFDFIKENGH  467 (504)
T ss_dssp             -------CCHHHHHHHHHHHCT
T ss_pred             -------CCHHHHHHHHHhcCC
Confidence                   356899999988754

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.90  E-value=1.4e-09  Score=118.22  Aligned_cols=65  Identities=11%  Similarity=0.160  Sum_probs=59.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC---------CceEEEecCCCchhchhhhCCCCCCcEEEEEECCE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT---------NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE  563 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---------~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~  563 (612)
                      ..+|||+||++||++|+.|.|.|++||++|.         .++|++||.+..+ .+..+|.|.++||+++|++|.
T Consensus        42 ~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~-~la~~y~V~~~PTlilf~~gg  115 (470)
T 3qcp_A           42 LCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV-DLCRKYDINFVPRLFFFYPRD  115 (470)
T ss_dssp             GSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH-HHHHHTTCCSSCEEEEEEESS
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH-HHHHHcCCCccCeEEEEECCC
Confidence            3579999999999999999999999999997         3999999999876 788999999999999998554

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.90  E-value=3.9e-09  Score=95.65  Aligned_cols=83  Identities=17%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHH---HHhhc--CCceEEEecCCCchhc-----------------------hhhhCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAE---LSRSH--TNVKFVSVPLGCVGDH-----------------------FSATFK  549 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~---LA~~~--~~vkF~ki~~~~~~d~-----------------------~~~~~~  549 (612)
                      +.+|+++||++||++|+.+.+.|.+   |.++|  .++.|+.|+.+...+.                       +...|.
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            4589999999999999999999999   99988  4699999987754211                       357899


Q ss_pred             CCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        550 TSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       550 i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.++|+++++ ++|+++.+.++.          ++|+.+|.+
T Consensus       111 v~~~P~~~lid~~G~i~~~~~~~----------~~l~~~l~e  142 (142)
T 3eur_A          111 LRAIPTLYLLDKNKTVLLKDATL----------QKVEQYLAE  142 (142)
T ss_dssp             CTTCSEEEEECTTCBEEEEEECH----------HHHHHHHHC
T ss_pred             CCcCCeEEEECCCCcEEecCCCH----------HHHHHHHhC
Confidence            9999999998 889999877654          889998863

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.89  E-value=2.2e-09  Score=113.17  Aligned_cols=86  Identities=13%  Similarity=0.242  Sum_probs=71.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC---ceEEEecCCCchhchhhhCCCCCCcEEEEEECC--EEeeEEEecc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN---VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGG--EVVGNFVRLG  572 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~---vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G--~~~~~~vg~~  572 (612)
                      ...++|.||++||++|+.|.+.|.+||++|..   +.|++||++...   ..+|.+.++||+++|++|  +....+.|  
T Consensus       267 ~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~---~~~~~v~~~Pt~~~~~~~~~~~~~~~~G--  341 (361)
T 3uem_A          267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE---VEAVKVHSFPTLKFFPASADRTVIDYNG--  341 (361)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB---CSSCCCCSSSEEEEECSSSSCCCEECCS--
T ss_pred             CCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc---hhhcCCcccCeEEEEECCCCcceeEecC--
Confidence            45899999999999999999999999999864   999999988652   478999999999999665  44444443  


Q ss_pred             ccccCCCCHHHHHHHHHHCCc
Q psy12938        573 EELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       573 ~~~g~~~~~~~lE~~L~~~g~  593 (612)
                           ..+.++|..||.+++-
T Consensus       342 -----~~~~~~l~~~l~~~~~  357 (361)
T 3uem_A          342 -----ERTLDGFKKFLESGGQ  357 (361)
T ss_dssp             -----CSSHHHHHHHHTTTSC
T ss_pred             -----CCCHHHHHHHHHhcCC
Confidence                 3566999999987763

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.88  E-value=1.5e-09  Score=100.47  Aligned_cols=87  Identities=10%  Similarity=0.132  Sum_probs=70.0

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhc--CCceEEEecC----------------------------CCchhchhh
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSH--TNVKFVSVPL----------------------------GCVGDHFSA  546 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~----------------------------~~~~d~~~~  546 (612)
                      ++.+|+|+||++||++|+.+.+.|.+++++|  .++.|+-|..                            +... .+..
T Consensus        37 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~  115 (164)
T 2h30_A           37 KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGG-TIAQ  115 (164)
T ss_dssp             TTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTC-HHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCch-HHHH
Confidence            3458999999999999999999999999986  4577766543                            2122 4668


Q ss_pred             hCCCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        547 TFKTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       547 ~~~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .|.+.++||+++| ++|+++..+.|..       +.++|+.+|.+.
T Consensus       116 ~~~v~~~P~~~lid~~G~i~~~~~g~~-------~~~~l~~~i~~~  154 (164)
T 2h30_A          116 NLNISVYPSWALIGKDGDVQRIVKGSI-------NEAQALALIRNP  154 (164)
T ss_dssp             HTTCCSSSEEEEECTTSCEEEEEESCC-------CHHHHHHHHHCT
T ss_pred             HcCCCccceEEEECCCCcEEEEEcCCC-------CHHHHHHHHHHH
Confidence            8999999999999 8999999888753       348899888754

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.88  E-value=2.1e-09  Score=97.25  Aligned_cols=66  Identities=23%  Similarity=0.267  Sum_probs=58.1

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..++++|.|.|+..||||+|.|   +.+...++.++||.+|.+||+|+++|+|++||    |||.++.+++|.
T Consensus        27 ~~~~~~v~l~k~~~glG~~i~g---g~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~   96 (130)
T 1i16_A           27 EATVCTVTLEKMSAGLGFSLEG---GKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRF   96 (130)
T ss_dssp             SEEEEEEEEETTSSSTTEEEEC---CCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHH
T ss_pred             CCcEEEEEEEcCCCccCEEEec---CcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            3567789999999999999999   66655566789999999999999997799999    999999998774

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.88  E-value=5e-09  Score=95.96  Aligned_cols=87  Identities=13%  Similarity=0.121  Sum_probs=70.7

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc-----------------------hhchhhhCC--
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV-----------------------GDHFSATFK--  549 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~-----------------------~d~~~~~~~--  549 (612)
                      ++.+|+|.||++||++|+.+.+.|.+++++|.  ++.|+.|+.+..                       ...+...|.  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            45689999999999999999999999999983  699999987621                       113556788  


Q ss_pred             CCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        550 TSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       550 i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.++|+++++ ++|+++..+.|..       +.++|+.+|.+
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~~-------~~~~l~~~l~~  137 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQTITGEV-------NEKSLTDAVKL  137 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEECCSCC-------CHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcEEEEECCCC-------CHHHHHHHHHH
Confidence            9999988888 8999999887763       34888888865

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.87  E-value=5e-09  Score=96.06  Aligned_cols=83  Identities=13%  Similarity=0.175  Sum_probs=68.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCc------------------------hhchhhhCCCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCV------------------------GDHFSATFKTS  551 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~------------------------~d~~~~~~~i~  551 (612)
                      +.+|+|.||++||++|+.+.+.|.+++++|+.  +.|+.|+.+..                        ...+...|.+.
T Consensus        29 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~  108 (152)
T 2lrn_A           29 GKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIV  108 (152)
T ss_dssp             TSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCC
Confidence            45899999999999999999999999999975  99999988751                        12577899999


Q ss_pred             CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        552 GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       552 ~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .+|+++++ ++|+++..+++          .++|+.+|.+
T Consensus       109 ~~P~~~lid~~G~i~~~~~~----------~~~l~~~l~~  138 (152)
T 2lrn_A          109 GFPHIILVDPEGKIVAKELR----------GDDLYNTVEK  138 (152)
T ss_dssp             SSCEEEEECTTSEEEEECCC----------TTHHHHHHHH
T ss_pred             cCCeEEEECCCCeEEEeeCC----------HHHHHHHHHH
Confidence            99999999 89999997632          1456666654

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.87  E-value=5.7e-09  Score=96.50  Aligned_cols=86  Identities=16%  Similarity=0.281  Sum_probs=70.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCchhchhhhC---------------------------
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVGDHFSATF---------------------------  548 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~d~~~~~~---------------------------  548 (612)
                      +.++||.||++||+.|+.+.+.|..++++|++  +.|+.|+.+... ....+|                           
T Consensus        34 gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           34 GKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQL-PNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCH-HHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCH-HHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            45899999999999999999999999999974  999999887543 333444                           


Q ss_pred             CCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        549 KTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       549 ~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .+..+|+++++ ++|+++..+.|..       +.++|+.+|.+.
T Consensus       113 ~i~~~P~~~lid~~G~i~~~~~g~~-------~~~~l~~~l~~~  149 (165)
T 3or5_A          113 GITGIPTSFVIDASGNVSGVIVGPR-------SKADFDRIVKMA  149 (165)
T ss_dssp             CSCSSSEEEEECTTSBEEEEECSCC-------CHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCCC-------CHHHHHHHHHHH
Confidence            79999998888 8999999888763       347777777643

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.87  E-value=8e-09  Score=94.26  Aligned_cols=89  Identities=17%  Similarity=0.208  Sum_probs=74.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCchh---------------------chhhhCCCCCCc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVGD---------------------HFSATFKTSGLP  554 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~d---------------------~~~~~~~i~~lP  554 (612)
                      +.+++|.||++||+.|+.+.+.|..++++|+.  ++|+.|+.+....                     .+...|.+.++|
T Consensus        28 gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  107 (152)
T 3gl3_A           28 GSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGMP  107 (152)
T ss_dssp             TSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCCC
Confidence            45899999999999999999999999999975  8999998774321                     355779999999


Q ss_pred             EEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        555 AMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       555 tllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +++++ ++|+++..++|...     ...+.|+.+|.++
T Consensus       108 ~~~lid~~G~i~~~~~g~~~-----~~~~~l~~~i~~~  140 (152)
T 3gl3_A          108 TSFLIDRNGKVLLQHVGFRP-----ADKEALEQQILAA  140 (152)
T ss_dssp             EEEEECTTSBEEEEEESCCT-----TTHHHHHHHHHHH
T ss_pred             eEEEECCCCCEEEEEccCCC-----cCHHHHHHHHHHH
Confidence            98777 99999999988632     3558888888764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.86  E-value=1.7e-09  Score=125.81  Aligned_cols=97  Identities=14%  Similarity=0.193  Sum_probs=70.2

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG  561 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~  561 (612)
                      |....|.+.+.   ...+++|+||++||++|+.|.+.++++|+++. .++|++||.+..+ .+..+|.+.++||+++|++
T Consensus       121 l~~~~f~~~i~---~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pt~~~~~~  196 (780)
T 3apo_A          121 LERREFDAAVN---SGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDR-MLCRMKGVNSYPSLFIFRS  196 (780)
T ss_dssp             CCHHHHHHHHT---SSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCS-SCC--------CEEEEECT
T ss_pred             echHhHHhhhc---CCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcH-HHHHHcCCceeeeEEEEeC
Confidence            33445666662   35589999999999999999999999999986 4999999999776 7889999999999999999


Q ss_pred             CEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        562 GEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       562 G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      |+.+..+.|..       +.+.|..||.+
T Consensus       197 g~~~~~~~G~~-------~~~~l~~~l~~  218 (780)
T 3apo_A          197 GMAAVKYNGDR-------SKESLVAFAMQ  218 (780)
T ss_dssp             TSCCEECCSCS-------CHHHHHHHHHT
T ss_pred             CcEeeEecCCC-------CHHHHHHHHHH
Confidence            99877777643       33555555543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.86  E-value=8.3e-09  Score=94.97  Aligned_cols=85  Identities=12%  Similarity=0.110  Sum_probs=69.4

Q ss_pred             CceEEEEEeCCCChhhhh-hHHHHHHHHhhcCC--ceEEEecCC----------------------------Cchhc---
Q psy12938        498 HITVIAHLSSPSLPACRA-LNSSLAELSRSHTN--VKFVSVPLG----------------------------CVGDH---  543 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~-m~~~l~~LA~~~~~--vkF~ki~~~----------------------------~~~d~---  543 (612)
                      +.+|||+||++||++|+. +.+.|.+++++|++  +.|+.|+.+                            ... .   
T Consensus        30 gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~  108 (160)
T 3lor_A           30 GKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPR-EGQR  108 (160)
T ss_dssp             TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCC-TTCS
T ss_pred             CCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCcc-ccch
Confidence            458999999999999999 79999999999974  999998752                            111 2   


Q ss_pred             ---hhhhCCCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        544 ---FSATFKTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       544 ---~~~~~~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                         +...|.+.++|+++++ ++|+++..+.|...       .+.|+.+|.+
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~-------~~~l~~~i~~  152 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQVD-------DFVLGLLLGS  152 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCCC-------HHHHHHHHHH
T ss_pred             hhhHHHhcccCccceEEEECCCCcEEEEecCcCC-------HHHHHHHHHH
Confidence               6789999999999999 69999999888643       3667776654

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.84  E-value=1.3e-08  Score=93.56  Aligned_cols=86  Identities=13%  Similarity=0.151  Sum_probs=69.3

Q ss_pred             CceEEEEEeCCCChhhhhh-HHHHHHHHhhcC--CceEEEecCC----------------------------Cchh----
Q psy12938        498 HITVIAHLSSPSLPACRAL-NSSLAELSRSHT--NVKFVSVPLG----------------------------CVGD----  542 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m-~~~l~~LA~~~~--~vkF~ki~~~----------------------------~~~d----  542 (612)
                      +.+|||+||++||++|+.+ .+.|.+++++|+  ++.|+.|+.+                            ....    
T Consensus        28 gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  107 (158)
T 3eyt_A           28 GKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAMP  107 (158)
T ss_dssp             TSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSSC
T ss_pred             CCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhhH
Confidence            4589999999999999995 999999999997  5999998753                            1100    


Q ss_pred             chhhhCCCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        543 HFSATFKTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       543 ~~~~~~~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .+...|.+.++|+++++ ++|+++..+.|...       .++|+.+|.+
T Consensus       108 ~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~~-------~~~l~~~i~~  149 (158)
T 3eyt_A          108 RTMAAYQMRGTPSLLLIDKAGDLRAHHFGDVS-------ELLLGAEIAT  149 (158)
T ss_dssp             HHHHHTTCCSSSEEEEECTTSEEEEEEESCCC-------HHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCCCEEEEEeCCCC-------HHHHHHHHHH
Confidence            26789999999998888 89999999988633       3667766654

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.84  E-value=1.3e-08  Score=90.16  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=71.5

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecC----------------------------CCchhchhhh
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPL----------------------------GCVGDHFSAT  547 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~----------------------------~~~~d~~~~~  547 (612)
                      ++.++||.||++||+.|+.+.+.|.+++++++ .+.|+.|+.                            +... .+...
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~   99 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSG-KLLET   99 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTC-HHHHH
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcch-HHHHH
Confidence            34589999999999999999999999999986 699999832                            1111 46789


Q ss_pred             CCCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        548 FKTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       548 ~~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      |.+.++|+++++ ++|+++..+.|...       .++|+.+|.+
T Consensus       100 ~~v~~~P~~~lid~~G~i~~~~~g~~~-------~~~l~~~l~~  136 (138)
T 4evm_A          100 YGVRSYPTQAFIDKEGKLVKTHPGFME-------KDAILQTLKE  136 (138)
T ss_dssp             TTCCSSSEEEEECTTCCEEEEEESCCC-------HHHHHHHHHH
T ss_pred             cCcccCCeEEEECCCCcEEEeecCCCc-------HHHHHHHHHh
Confidence            999999999999 99999998887633       4888888875

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=98.83  E-value=3.5e-09  Score=91.92  Aligned_cols=63  Identities=33%  Similarity=0.562  Sum_probs=54.7

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCC--CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAG--LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~--~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++++|.|.|++.||||+|.|   +.+..  .++.|+||.+|.+||+|++.|+|++||    |||.++.++++
T Consensus         3 ~~~~v~l~k~~~glG~~i~g---g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   71 (105)
T 2awx_A            3 KIMEIKLIKGPKGLGFSIAG---GVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTH   71 (105)
T ss_dssp             CEEEEEEECBTTBSSEEEEE---CBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBH
T ss_pred             eEEEEEEEECCCCCCEEEeC---ccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            57889999999999999999   54432  245699999999999999999999999    89999988665

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.83  E-value=2.2e-09  Score=94.41  Aligned_cols=67  Identities=64%  Similarity=0.952  Sum_probs=58.7

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +++++|.|.|+..||||+|.+.+.+.+....+.|+||.+|.|||+|++.|+|++||    |||.++.++++
T Consensus         3 ~~~~~v~l~k~~~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~   73 (113)
T 2g5m_B            3 MELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQ   73 (113)
T ss_dssp             CEEEEEECCCCSSCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCH
T ss_pred             eEEEEEEEEeCCCCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            57888999999999999999965555554456799999999999999999999999    89999998765

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.82  E-value=4.2e-09  Score=89.23  Aligned_cols=64  Identities=34%  Similarity=0.576  Sum_probs=55.2

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCC--CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAG--LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~--~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +++++|.|.|++.||||+|.|   |.+..  ..+.|+||..|.+||+|++.|+|++||    |||.++.++++
T Consensus         2 ~~~~~v~l~k~~~g~G~~i~g---g~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   71 (94)
T 2fe5_A            2 MTIMEVNLLKGPKGLGFSIAG---GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRH   71 (94)
T ss_dssp             CCEEEEEEECCTTCSCEEEEE---CBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBH
T ss_pred             cEEEEEEEEECCCCCCEEEEc---ccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            467889999999999999999   44432  346699999999999999999999999    89999988654

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.82  E-value=9.1e-09  Score=102.86  Aligned_cols=83  Identities=14%  Similarity=0.248  Sum_probs=69.1

Q ss_pred             CceEEEEEeC--CCChhhhhhHHHHHHHHhhc---CCceEEEecCCC-----chhchhhhCCCC--CCcEEEEEECCE--
Q psy12938        498 HITVIAHLSS--PSLPACRALNSSLAELSRSH---TNVKFVSVPLGC-----VGDHFSATFKTS--GLPAMLAYRGGE--  563 (612)
Q Consensus       498 ~~~Vvvhfy~--~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~-----~~d~~~~~~~i~--~lPtllvyk~G~--  563 (612)
                      ..+|+|.||+  |||+    |.|.|+.||..|   +.++|++||++.     .+ .+..+|.|.  ++|||++|++|+  
T Consensus        22 ~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~-~l~~~~~V~~~~~PTl~~f~~G~~~   96 (240)
T 2qc7_A           22 SKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNM-ELSEKYKLDKESYPVFYLFRDGDFE   96 (240)
T ss_dssp             CSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSH-HHHHHTTCCGGGCSEEEEEETTCSS
T ss_pred             CCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhH-HHHHHcCCCCCCCCEEEEEeCCCcC
Confidence            3489999999  9998    999999999997   569999999653     44 688999999  999999999998  


Q ss_pred             EeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        564 VVGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       564 ~~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      ....+.|.       .+.+.|..||.++.
T Consensus        97 ~~~~y~G~-------~~~~~L~~fi~~~~  118 (240)
T 2qc7_A           97 NPVPYTGA-------VKVGAIQRWLKGQG  118 (240)
T ss_dssp             CCEECCSC-------SCHHHHHHHHHHTT
T ss_pred             cceeecCC-------CCHHHHHHHHHHhc
Confidence            34444432       45689999999885

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.82  E-value=7.8e-09  Score=93.48  Aligned_cols=84  Identities=14%  Similarity=0.183  Sum_probs=69.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhc-C--CceEEEecCCCch------------------------hchhhhCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSH-T--NVKFVSVPLGCVG------------------------DHFSATFK  549 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~--~vkF~ki~~~~~~------------------------d~~~~~~~  549 (612)
                      ++.+|+|+||++||++|+.+.+.|..++++| .  ++.|+.|+.+...                        ..+...|.
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            4568999999999999999999999999999 5  4899999876421                        15678999


Q ss_pred             CCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        550 TSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       550 i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +.++|+++++ ++|+++..+.          ..++++.+|.+
T Consensus       112 v~~~P~~~lid~~G~i~~~~~----------~~~~l~~~l~~  143 (148)
T 3fkf_A          112 ILTLPTNILLSPTGKILARDI----------QGEALTGKLKE  143 (148)
T ss_dssp             CCSSSEEEEECTTSBEEEESC----------CHHHHHHHHHH
T ss_pred             CCCcCEEEEECCCCeEEEecC----------CHHHHHHHHHH
Confidence            9999999999 8999988664          34777777764

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.81  E-value=3e-08  Score=95.71  Aligned_cols=96  Identities=20%  Similarity=0.362  Sum_probs=78.5

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcC--CCeEEEEEeecCCC-------C----------ch-------------h--
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDP-------V----------NS-------------E--   46 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~--~~~v~l~v~r~~~~-------~----------~~-------------~--   46 (612)
                      +||+|++|||..+.++++.++.++|+..  +..+.|+|.|....       .          ..             .  
T Consensus        57 ~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~~~~~~~~~v~l~~~~~~~lG~~~~~~~~~~~~~g  136 (196)
T 1p1d_A           57 IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDP  136 (196)
T ss_dssp             SSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEEECSCSCCBCCSSCEEEEECCCSSCCCCCEEECSCSSSTTCC
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEecCCCCCCCCCCcEEEEecCCCCCCcCEEEECCCCCCCCCC
Confidence            5999999999999999999999999987  67899999876421       0          00             0  


Q ss_pred             --hHHh-------hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         47 --VAQL-------IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        47 --i~~i-------~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                        |..+       ..|+|++||+|++|||..+.+++++++..+|+..+..+.|+|.|..
T Consensus       137 v~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~  195 (196)
T 1p1d_A          137 LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE  195 (196)
T ss_dssp             CEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             EEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence              1111       2234999999999999999999999999999988899999998853

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.81  E-value=5.4e-09  Score=90.10  Aligned_cols=65  Identities=32%  Similarity=0.481  Sum_probs=56.6

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+++++|.|.|+..||||+|.|   |.+.+.  .+.|+||..|.+||+|++.|+|++||    |||.++.++++
T Consensus         2 ~~~~~~v~l~k~~~glG~~i~~---g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   72 (102)
T 2i1n_A            2 MFKYEEIVLERGNSGLGFSIAG---GIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVH   72 (102)
T ss_dssp             CEEEEEEEEECBTTBTSEEEEE---CTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCH
T ss_pred             CceEEEEEEEECCCcCCEEEEc---ccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            4678889999999999999999   555432  46799999999999999999999999    89999988765

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.81  E-value=5.3e-09  Score=115.99  Aligned_cols=97  Identities=11%  Similarity=0.124  Sum_probs=72.9

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC----ceEEEecCCC--chhchhhhCCCCCCcEEEEEEC
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN----VKFVSVPLGC--VGDHFSATFKTSGLPAMLAYRG  561 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~----vkF~ki~~~~--~~d~~~~~~~i~~lPtllvyk~  561 (612)
                      |...+.+  ...+|+|+||++||++|+.|.+.|++||++|..    ++|++||.+.  .+ .+..+|.+.++||+++|++
T Consensus        22 f~~~v~~--~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~-~l~~~~~V~~~PTl~~f~~   98 (519)
T 3t58_A           22 VRPTVLG--SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNS-AVCREFNIAGFPTVRFFQA   98 (519)
T ss_dssp             HHHHHSS--CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGGH-HHHHHTTCCSBSEEEEECT
T ss_pred             HHHHHHh--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccccH-HHHHHcCCcccCEEEEEcC
Confidence            4344433  345899999999999999999999999999964    9999999853  44 7889999999999999997


Q ss_pred             CEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        562 GEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       562 G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      |...+..+.. ..+  +.+.+.|+.+|.+
T Consensus        99 g~~~G~~~~~-~~g--~~~~~~L~~~l~~  124 (519)
T 3t58_A           99 FTKNGSGATL-PGA--GANVQTLRMRLID  124 (519)
T ss_dssp             TCCSCCCEEE-CCS--SCCHHHHHHHHHH
T ss_pred             cccCCCceeE-ecC--CCCHHHHHHHHHH
Confidence            6554432221 112  2456777777654

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.81  E-value=9.5e-09  Score=93.75  Aligned_cols=90  Identities=14%  Similarity=0.180  Sum_probs=73.6

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCch----------------------hchhhhCCCCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVG----------------------DHFSATFKTSG  552 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~----------------------d~~~~~~~i~~  552 (612)
                      .+.+++|.||++||+.|+.+.+.|..++++|++  +.|+.|+.+...                      ..+...|.+.+
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            345899999999999999999999999999964  999999877532                      14678899999


Q ss_pred             CcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938        553 LPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       553 lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~  593 (612)
                      +|+++++. +|+++..+.|..       +.++|+.+|.+..-
T Consensus       109 ~P~~~lid~~G~i~~~~~g~~-------~~~~l~~~l~~~~~  143 (152)
T 2lja_A          109 IPRFILLDRDGKIISANMTRP-------SDPKTAEKFNELLG  143 (152)
T ss_dssp             SCCEEEECTTSCEEESSCCCT-------TCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCeEEEccCCCC-------CHHHHHHHHHHHhc
Confidence            99999997 999998766542       33788888876543

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.80  E-value=1.8e-08  Score=93.51  Aligned_cols=87  Identities=10%  Similarity=0.175  Sum_probs=71.7

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC------------------Cch-----------------
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG------------------CVG-----------------  541 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~------------------~~~-----------------  541 (612)
                      ++.++||+||++||+.|+.+.+.|.+++++|++++|+.|+.+                  ...                 
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM  115 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeE
Confidence            456899999999999999999999999999999999999876                  221                 


Q ss_pred             ----hchhhhCCCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        542 ----DHFSATFKTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       542 ----d~~~~~~~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                          ..+...|.+..+|+++++ ++|+++.  .|..      .+.++|+.+|.+.
T Consensus       116 ~~d~~~~~~~~~v~~~P~~~lid~~G~i~~--~g~~------~~~~~l~~~l~~l  162 (165)
T 3ha9_A          116 VMDDGSLVEKFNVRSIDYIVIMDKSSNVLY--AGTT------PSLGELESVIKSV  162 (165)
T ss_dssp             EECCSHHHHHTTCCSSSEEEEEETTCCEEE--EEES------CCHHHHHHHHHHC
T ss_pred             EeChHHHHHHhCCCCceEEEEEcCCCcEEE--eCCC------CCHHHHHHHHHHH
Confidence                146788999999999999 8899988  5542      1457888888753

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.80  E-value=5.4e-09  Score=92.99  Aligned_cols=65  Identities=28%  Similarity=0.455  Sum_probs=56.4

Q ss_pred             eeEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        311 LTLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       311 ~~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ....+|.|.|+. .||||+|.|   |.++...+.|+||.+|.+||+|+++|+|++||    |||.++.++++.
T Consensus        23 ~~~~~v~l~k~~~~~lGf~i~g---g~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~   92 (118)
T 3b76_A           23 MHEKVVNIQKDPGESLGMTVAG---GASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRS   92 (118)
T ss_dssp             EEEEEEEEECCTTCCCCEEEEE---CSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHH
T ss_pred             CCcEEEEEEeCCCCccCEEEec---CCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            345668888986 899999999   66555567799999999999999999999999    999999998874

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.80  E-value=2.1e-09  Score=115.03  Aligned_cols=94  Identities=24%  Similarity=0.411  Sum_probs=36.4

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCC--CeEEEEEeecCCCCch------------------hhHHhhhc------c
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDPVNS------------------EVAQLIRQ------S   54 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~--~~v~l~v~r~~~~~~~------------------~i~~i~~G------~   54 (612)
                      +||+|++|||.++.+.+|.+++.+|+..+  ..+.|+|.|.......                  .|..+..|      +
T Consensus       253 ~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~~v~l~~~~~~~~lG~~i~~g~I~~V~~gs~A~~aG  332 (388)
T 3suz_A          253 IGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGG  332 (388)
T ss_dssp             TTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC-----------------------------------
T ss_pred             CCCEEEEECCEEccCCCHHHHHHHHHhccCCCccccccccccccceeeEeecCCCCccceEEecCEEEEeecCCHHHHcC
Confidence            59999999999999999999999999863  4699999887432110                  02233322      5


Q ss_pred             cCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEee
Q psy12938         55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR   94 (612)
Q Consensus        55 L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R   94 (612)
                      |++||+|++|||+++.+.+|++++.+|+.+++.++|+|.+
T Consensus       333 L~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p  372 (388)
T 3suz_A          333 VRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP  372 (388)
T ss_dssp             ----------------------------------------
T ss_pred             CCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEe
Confidence            9999999999999999999999999999999999999863

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=98.79  E-value=7.7e-09  Score=120.24  Aligned_cols=101  Identities=9%  Similarity=0.056  Sum_probs=84.1

Q ss_pred             HHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCE
Q psy12938        485 DRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGE  563 (612)
Q Consensus       485 ~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~  563 (612)
                      ...|.+.+..  ...+|+|.||++||++|+.+.+.|+.||++|. .++|++|+.+..+ .+..+|.+.++||+++|++|+
T Consensus       664 ~~~~~~~~~~--~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~-~~~~~~~v~~~Pt~~~~~~g~  740 (780)
T 3apo_A          664 PQTFNEKVLQ--GKTHWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYP-QTCQKAGIKAYPSVKLYQYER  740 (780)
T ss_dssp             HHHHHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEEEET
T ss_pred             HHHHHHHHhc--CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHhcCCCcCCEEEEEcCCC
Confidence            3456555543  34589999999999999999999999999994 7999999999876 688999999999999999999


Q ss_pred             EeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        564 VVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       564 ~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .+.+++|+.-  | ..+.++|+.+|.++
T Consensus       741 ~~~~~~G~~~--g-~~~~~~l~~~l~~~  765 (780)
T 3apo_A          741 AKKSIWEEQI--N-SRDAKTIAALIYGK  765 (780)
T ss_dssp             TTTEEEEEEE--C-CCCHHHHHHHHHHH
T ss_pred             ccccccCccc--C-CcCHHHHHHHHHHH
Confidence            9998988621  1 35668899998765

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.79  E-value=5.5e-09  Score=94.49  Aligned_cols=74  Identities=8%  Similarity=0.164  Sum_probs=65.3

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCchhc-------------------------hhhhCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVGDH-------------------------FSATFK  549 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~d~-------------------------~~~~~~  549 (612)
                      ++.+|+|+||++||+.|+.+.+.|..++++|+.  +.|+.|+.+... .                         +...|.
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  108 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKD-EEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD  108 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSS-HHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCH-HHHHHHHHHcCCCCceEEeccccchhHHHhcC
Confidence            345899999999999999999999999999975  999999887543 3                         778899


Q ss_pred             CCCCcEEEEE-ECCEEeeEEEec
Q psy12938        550 TSGLPAMLAY-RGGEVVGNFVRL  571 (612)
Q Consensus       550 i~~lPtllvy-k~G~~~~~~vg~  571 (612)
                      +..+|+++++ ++|+++.++.|.
T Consensus       109 i~~~P~~~lid~~G~i~~~~~g~  131 (148)
T 3hcz_A          109 IYATPVLYVLDKNKVIIAKRIGY  131 (148)
T ss_dssp             CCSSCEEEEECTTCBEEEESCCG
T ss_pred             cCCCCEEEEECCCCcEEEecCCH
Confidence            9999999999 899999988765

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.77  E-value=2.7e-08  Score=91.83  Aligned_cols=76  Identities=18%  Similarity=0.242  Sum_probs=65.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCC-------------------chhchhhhCCCCCCcEE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGC-------------------VGDHFSATFKTSGLPAM  556 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~-------------------~~d~~~~~~~i~~lPtl  556 (612)
                      +.+|+|.||++||+.|+.+.+.|.+++++|+  ++.|+.|+.+.                   .. .+...|.+..+|++
T Consensus        41 gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v~~~P~~  119 (158)
T 3hdc_A           41 GKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATG-QVQQRYGANRLPDT  119 (158)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTS-HHHHHTTCCSSSEE
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchH-HHHHHhCCCCcceE
Confidence            4589999999999999999999999999997  79999998765                   33 57789999999996


Q ss_pred             EEE-ECCEEeeEEEecccc
Q psy12938        557 LAY-RGGEVVGNFVRLGEE  574 (612)
Q Consensus       557 lvy-k~G~~~~~~vg~~~~  574 (612)
                      +++ ++|+++..+.|....
T Consensus       120 ~lid~~G~i~~~~~G~~~~  138 (158)
T 3hdc_A          120 FIVDRKGIIRQRVTGGIEW  138 (158)
T ss_dssp             EEECTTSBEEEEEESCCCT
T ss_pred             EEEcCCCCEEEEEeCCCcc
Confidence            666 999999999887443

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.77  E-value=1.9e-08  Score=91.88  Aligned_cols=89  Identities=21%  Similarity=0.332  Sum_probs=71.6

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCc-h---------------------hchhhhCCCCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCV-G---------------------DHFSATFKTSG  552 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~-~---------------------d~~~~~~~i~~  552 (612)
                      ++.+++|.||++||+.|+.+.+.|.+++++|+.  +.|+.|+.+.. .                     ..+...|.+..
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            345899999999999999999999999999975  89999988753 1                     12667899999


Q ss_pred             Cc-EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        553 LP-AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       553 lP-tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +| ++++.++|+++..+.|...     ...++++.+|.+
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~-----~~~~~l~~~l~~  140 (154)
T 3kcm_A          107 VPETFVIDRHGVILKKVVGAME-----WDHPEVIAFLNN  140 (154)
T ss_dssp             BCEEEEECTTSBEEEEEESCCC-----TTSHHHHHHHHT
T ss_pred             CCeEEEECCCCcEEEEEcCCCc-----cccHHHHHHHHH
Confidence            99 5555599999999988743     344788888864

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.75  E-value=1e-08  Score=95.51  Aligned_cols=73  Identities=19%  Similarity=0.235  Sum_probs=60.3

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC-----------------------CchhchhhhCCCCCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG-----------------------CVGDHFSATFKTSGL  553 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~-----------------------~~~d~~~~~~~i~~l  553 (612)
                      ++.++||+||++||++|+.+.+.|.+|+++  +++|+.|+.+                       ... .+...|.+.++
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v~~~  126 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDG-MLGLDLGVYGA  126 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTC-HHHHHHTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcch-HHHHHcCcccc
Confidence            455899999999999999999999999987  7888888732                       222 46678999999


Q ss_pred             c-EEEEEECCEEeeEEEecc
Q psy12938        554 P-AMLAYRGGEVVGNFVRLG  572 (612)
Q Consensus       554 P-tllvyk~G~~~~~~vg~~  572 (612)
                      | ++++.++|+++..+.|..
T Consensus       127 P~~~lid~~G~i~~~~~g~~  146 (168)
T 2b1k_A          127 PETFLIDGNGIIRYRHAGDL  146 (168)
T ss_dssp             SEEEEECTTSBEEEEEESCC
T ss_pred             CEEEEECCCCeEEEEEeCCC
Confidence            9 677778999999888753

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.75  E-value=9.1e-09  Score=91.30  Aligned_cols=65  Identities=34%  Similarity=0.563  Sum_probs=55.9

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCC--CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAG--LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~--~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..++.+|.|.|+..||||+|.|   |.+..  .++.|+||.+|.+||+|++.|+|++||    |||.++.++++
T Consensus        22 ~~~~~~v~l~k~~~glG~~i~g---g~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~   92 (117)
T 2byg_A           22 SMTVVEIKLFKGPKGLGFSIAG---GVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTH   92 (117)
T ss_dssp             EEEEEEEEEECBTTBSSEEEEE---CTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CCceEEEEEEeCCCCcCEEEEc---ccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3467789999999999999999   54433  246799999999999999999999999    89999998776

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=98.75  E-value=9.2e-09  Score=87.55  Aligned_cols=64  Identities=36%  Similarity=0.594  Sum_probs=56.2

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.++|.|.|+..+|||+|.|   +.+....+.|+||..|.++|+|++.|+|++||    |||.++.++++
T Consensus         4 g~~~~v~l~k~~~~lG~~i~~---g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   71 (96)
T 1d5g_A            4 GDIFEVELAKNDNSLGISVTG---GVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATH   71 (96)
T ss_dssp             TCEEEEEEECSSSSCCEEEEC---CSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCH
T ss_pred             CCEEEEEEEeCCCCCCEEEEC---CCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            467889999999999999999   55554456799999999999999999999999    89999998755

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.74  E-value=9.9e-09  Score=103.04  Aligned_cols=81  Identities=12%  Similarity=0.273  Sum_probs=67.3

Q ss_pred             CceEEEEEe--CCCChhhhhhHHHHHHHHhhc----CCceEEEecCCC-----chhchhhhCCCC--CCcEEEEEECCEE
Q psy12938        498 HITVIAHLS--SPSLPACRALNSSLAELSRSH----TNVKFVSVPLGC-----VGDHFSATFKTS--GLPAMLAYRGGEV  564 (612)
Q Consensus       498 ~~~Vvvhfy--~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~-----~~d~~~~~~~i~--~lPtllvyk~G~~  564 (612)
                      ...|+|.||  +|||+    |.|.|++||..|    +.+.|++||++.     .+ .++.+|.|.  ++|||++|+ |+.
T Consensus        33 ~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~-~la~~~~V~~~~~PTl~~F~-G~~  106 (248)
T 2c0g_A           33 FPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELENK-ALGDRYKVDDKNFPSIFLFK-GNA  106 (248)
T ss_dssp             SSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTH-HHHHHTTCCTTSCCEEEEES-SSS
T ss_pred             CCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCcccccccH-HHHHHhCCCcCCCCeEEEEe-CCc
Confidence            458999999  99998    999999999987    579999999876     55 688999999  999999999 873


Q ss_pred             --eeEE--EeccccccCCCCHHHHHHHHHHC
Q psy12938        565 --VGNF--VRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       565 --~~~~--vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                        ...+  .|       ..+.+.|..||.++
T Consensus       107 ~~~~~y~~~G-------~~~~~~L~~fi~~~  130 (248)
T 2c0g_A          107 DEYVQLPSHV-------DVTLDNLKAFVSAN  130 (248)
T ss_dssp             SSEEECCTTS-------CCCHHHHHHHHHHH
T ss_pred             CcceeecccC-------CCCHHHHHHHHHHh
Confidence              2222  22       34668999999876

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=98.74  E-value=3.9e-09  Score=93.71  Aligned_cols=63  Identities=37%  Similarity=0.602  Sum_probs=55.6

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.+|.|.|+..||||+|.|   +.+...++.|+||.+|.+||+|++.|+|++||    |||.++.++++
T Consensus        25 ~~~~v~L~k~~~glGf~l~~---g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   91 (117)
T 2fne_A           25 QCKSITLERGPDGLGFSIVG---GYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTH   91 (117)
T ss_dssp             EEEEEEECCBTTBTSEEEEE---EEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             ccEEEEEEeCCCcccEEEec---ccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            56779999999999999999   55544456799999999999999999999999    89999998765

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.73  E-value=1.2e-08  Score=89.21  Aligned_cols=65  Identities=32%  Similarity=0.592  Sum_probs=57.3

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.++|.|.|+..||||+|.+   +.+...+..|+||..|.++|+|++.|+|++||    |||.++.++++
T Consensus         6 ~~~~~~v~l~~~~~glG~~l~~---g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   74 (110)
T 1um1_A            6 SGYVFTVELERGPSGLGMGLID---GMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGY   74 (110)
T ss_dssp             CCCEEEEEEECCTTCCCEEEEE---TTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCH
T ss_pred             CCcEEEEEEEECCCccCEEEeC---CcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3467889999999999999999   66655556799999999999999999999999    89999988665

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.73  E-value=8.9e-09  Score=90.17  Aligned_cols=62  Identities=24%  Similarity=0.454  Sum_probs=52.9

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ++..|.|.|+ .||||+|.|   |.+... ..++||.+|.+||+|+++|+|++||    |||.++.+++|.
T Consensus        15 ~~~~v~l~k~-~glG~~i~g---g~~~~~-~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~   80 (109)
T 1wi4_A           15 AFRVITVTKE-TGLGLKILG---GINRNE-GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFE   80 (109)
T ss_dssp             TEEEEEECCS-SCCCEEEEE---CSSSSS-CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHH
T ss_pred             cEEEEEEeCC-CccCEEEEe---ccCCCC-CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            4566889887 799999999   555432 3489999999999999999999999    999999998774

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.73  E-value=2e-08  Score=97.00  Aligned_cols=100  Identities=17%  Similarity=0.160  Sum_probs=76.3

Q ss_pred             eeEEEEEEeeCC-CCcceEEEeccCCCCCCC-CccceEEEEeccCchhcccCCccccc----CCceeeeeccc-------
Q psy12938        311 LTLLGVELMKGA-EGLGLSIIGMGVGADAGL-EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV-------  377 (612)
Q Consensus       311 ~~~~~v~l~k~~-~glG~si~g~~~g~~~~~-~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~-------  377 (612)
                      .+.++|.|.|+. .||||+|.|   +.+... ...++||..|.+|++|++.|+|++||    |||..+.++++       
T Consensus         5 ~~~~~v~l~~~~~~glG~~i~~---~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l   81 (196)
T 1p1d_A            5 TETTEVVLTADPVTGFGIQLQG---SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLL   81 (196)
T ss_dssp             CEEEEEEEECBTTTBCCCEEEE---CSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHH
T ss_pred             cEEEEEEEEeCCCCccCEEEeC---CcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            467889999997 899999999   544322 35689999999999999999999999    78877763210       


Q ss_pred             -----cc--------CC------------------CC--------------cccceEEEEeeccccccccCcceeccCCc
Q psy12938        378 -----GA--------DA------------------GL--------------EKLGIFVKTITEAGAAARDGRIQVRRGPK  412 (612)
Q Consensus       378 -----~~--------~~------------------~~--------------~~~~i~i~~i~~~~~a~~dg~l~~~~~~~  412 (612)
                           +.        ..                  ..              ...|+||..|.++++|++.|+|+.+|--.
T Consensus        82 ~~~~~g~~v~l~v~R~~~~~~~~~~~~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~  161 (196)
T 1p1d_A           82 RDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLL  161 (196)
T ss_dssp             HTCCSSSEEEEEEEECSCSCCBCCSSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEE
T ss_pred             HhCCCCCeEEEEEEecCCCCCCCCCCcEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEE
Confidence                 00        00                  00              04688999999999999999999888543


Q ss_pred             c
Q psy12938        413 G  413 (612)
Q Consensus       413 g  413 (612)
                      .
T Consensus       162 ~  162 (196)
T 1p1d_A          162 A  162 (196)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.73  E-value=2.1e-08  Score=91.73  Aligned_cols=84  Identities=15%  Similarity=0.243  Sum_probs=65.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----------------------hchhhhCCCCCCcE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----------------------DHFSATFKTSGLPA  555 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----------------------d~~~~~~~i~~lPt  555 (612)
                      +.+++|+||++||+.|+.+.+.|..++++ .++.|+.|+.+..+                      ..+...|.+..+|+
T Consensus        42 gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  120 (156)
T 1kng_A           42 GKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  120 (156)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             CCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccCe
Confidence            45899999999999999999999999888 67999998754211                      14567899999995


Q ss_pred             E-EEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        556 M-LAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       556 l-lvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      + ++.++|+.+..+.|....       ++++.+|.
T Consensus       121 ~~~id~~G~i~~~~~g~~~~-------~~l~~~l~  148 (156)
T 1kng_A          121 TFVVGREGTIVYKLVGPITP-------DNLRSVLL  148 (156)
T ss_dssp             EEEECTTSBEEEEEESCCCH-------HHHHHTHH
T ss_pred             EEEEcCCCCEEEEEeCCCCH-------HHHHHHHH
Confidence            5 555999999988876333       55555554

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.72  E-value=9.7e-09  Score=89.18  Aligned_cols=65  Identities=38%  Similarity=0.684  Sum_probs=55.2

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+.++|.| |+..||||+|.|   +.+....+.|+||..|.+||+|++.|+|++||    |||.++.++++.
T Consensus         9 ~~~~~~v~l-~~~~glG~~i~~---~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~   77 (106)
T 3axa_A            9 EPEIITVTL-KKQNGMGLSIVA---AKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQE   77 (106)
T ss_dssp             -CCEEEEEE-ECSSSCSEEEEE---EECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred             CceEEEEEE-CCCCccCEEEEe---ecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            346778999 888999999999   55444466799999999999999999999999    899999987663

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.71  E-value=7.9e-09  Score=90.20  Aligned_cols=64  Identities=23%  Similarity=0.323  Sum_probs=54.6

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCC-CccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGL-EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~-~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ++++|.|.|++.||||+|.|   +.+... .+.|+||.+|.+||+|+++|+|++||    |||.++.++++.
T Consensus        15 ~~~~v~l~k~~~glG~~i~~---~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~   83 (108)
T 2d92_A           15 EVKIVELVKDCKGLGFSILD---YQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLA   83 (108)
T ss_dssp             SCEEEEEEECSSCCSEEEEE---EECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHH
T ss_pred             ceEEEEEEECCCccCEEEec---ccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            45679999999999999999   444222 45799999999999999999999999    999999987663

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.71  E-value=1.8e-08  Score=95.37  Aligned_cols=85  Identities=14%  Similarity=0.167  Sum_probs=66.1

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--c------eEEEecCCC-chhchhhhC--------------------
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN--V------KFVSVPLGC-VGDHFSATF--------------------  548 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--v------kF~ki~~~~-~~d~~~~~~--------------------  548 (612)
                      +.+|||+||++||++|+.+.+.|.+++++|.+  +      .|+.|+.+. .+ ....+|                    
T Consensus        59 gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           59 NQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSR-DIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCH-HHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCH-HHHHHHHHHcCCCccEEECCcchHHH
Confidence            45899999999999999999999999999853  7      999999876 33 333443                    


Q ss_pred             -----CCCCCcE-EEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        549 -----KTSGLPA-MLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       549 -----~i~~lPt-llvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                           .+..+|+ +++.++|+++..+.|..       +.++|+.+|.+
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~-------~~~~l~~~l~~  178 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRPAAVFLREV-------TSKDVLDVALP  178 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCEEEEECSCC-------CHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcEEEEEcCCC-------CHHHHHHHHHH
Confidence                 6889995 55569999999887652       44777777754

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.71  E-value=1.1e-08  Score=89.08  Aligned_cols=66  Identities=35%  Similarity=0.567  Sum_probs=57.7

Q ss_pred             ceeEEEEEEeeCCCCcceEEE-----eccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSII-----GMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~-----g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+.++|.|.|+..||||+|.     |   |.+....+.|+||.+|.++|+|++.|+|++||    |||.++.++++.
T Consensus         7 ~~~~~~v~l~k~~~~lG~~i~~~~~~g---g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~   81 (108)
T 1q7x_A            7 PGDIFEVELAKNDNSLGISVTVLFDKG---GVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHK   81 (108)
T ss_dssp             SSSEEEEEEESSSCSCCEEESSSSSSB---CBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTS
T ss_pred             CCcEEEEEEEECCCCccEEEEEeccCC---CccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            346788999999999999999     8   66655556799999999999999999999999    899999987663

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.70  E-value=3e-08  Score=90.48  Aligned_cols=85  Identities=14%  Similarity=0.191  Sum_probs=68.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecC-----------------------CCchhchhhhCCCCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPL-----------------------GCVGDHFSATFKTSG  552 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~-----------------------~~~~d~~~~~~~i~~  552 (612)
                      +.++||.||++||+.|+.+.+.|.+++++|+  ++.|+.|..                       +... .+...|.+..
T Consensus        28 gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~i~~  106 (153)
T 2l5o_A           28 GKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADK-AVGQAFGTQV  106 (153)
T ss_dssp             TCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSC-HHHHHHTCCS
T ss_pred             CCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchH-HHHHHcCCCc
Confidence            4489999999999999999999999999996  488887653                       2222 4678899999


Q ss_pred             CcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        553 LPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       553 lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +|+++++ ++|+++..+.|..       +.+.|+.+|.+
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~-------~~~~l~~~l~~  138 (153)
T 2l5o_A          107 YPTSVLIGKKGEILKTYVGEP-------DFGKLYQEIDT  138 (153)
T ss_dssp             SSEEEEECSSSCCCEEEESSC-------CHHHHHHHHHH
T ss_pred             cCeEEEECCCCcEEEEEcCCC-------CHHHHHHHHHH
Confidence            9999999 8999999888753       33667766654

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.67  E-value=2.8e-08  Score=89.61  Aligned_cols=85  Identities=11%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHH---HHhhcC--CceEEEecCCCchhc---------------------h--hhhC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAE---LSRSHT--NVKFVSVPLGCVGDH---------------------F--SATF  548 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~---LA~~~~--~vkF~ki~~~~~~d~---------------------~--~~~~  548 (612)
                      ++.+|+|+||++||++|+.+.+.|.+   |+++|.  ++.|+.|+.+...+.                     +  ...|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            35589999999999999999999988   888884  599999987743211                     1  2389


Q ss_pred             CCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        549 KTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       549 ~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .+..+|+++++ ++|+++.+          ..+.++|+.+|.+.
T Consensus       106 ~v~~~P~~~lid~~G~i~~~----------~~~~~~l~~~l~~~  139 (142)
T 3ewl_A          106 DIRATPTIYLLDGRKRVILK----------DTSMEQLIDYLATQ  139 (142)
T ss_dssp             CCCSSSEEEEECTTCBEEEC----------SCCHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECCCCCEEec----------CCCHHHHHHHHHHH
Confidence            99999999999 79998762          24568999998753

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.67  E-value=2.8e-08  Score=85.35  Aligned_cols=64  Identities=38%  Similarity=0.612  Sum_probs=55.3

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ...++|.|.|+..||||+|.|   |.+...  .+.|+||..|.+||+|++.|+|++||    |||.++.++++
T Consensus         6 ~~~~~v~l~~~~~~lG~~l~~---g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   75 (101)
T 2jik_A            6 VTEEEINLTRGPSGLGFNIVG---GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH   75 (101)
T ss_dssp             EEEEEEEEECCTTCCCEEEEE---CTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCH
T ss_pred             CccEEEEEEeCCCCCCEEEec---cccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            456789999999999999999   555432  35699999999999999999999999    89999988755

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.67  E-value=3.4e-08  Score=81.32  Aligned_cols=74  Identities=15%  Similarity=0.328  Sum_probs=59.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCC--CCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFK--TSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~--i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      |+.|+++||+.|+.+.+.|++|+.+|+++.|..+|.+..+   +.+.+.+.  +..+|++  |.+|+.++.   +     
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~~---~-----   72 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIGG---Y-----   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEES---S-----
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEEC---H-----
Confidence            6779999999999999999999999989999999875322   25777888  8999998  669987652   1     


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                           ++|..+|.+
T Consensus        73 -----~~l~~~~~~   81 (85)
T 1ego_A           73 -----TDFAAWVKE   81 (85)
T ss_dssp             -----HHHHHHHHH
T ss_pred             -----HHHHHHHHH
Confidence                 677777754

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.66  E-value=2.3e-08  Score=94.96  Aligned_cols=69  Identities=12%  Similarity=0.136  Sum_probs=57.4

Q ss_pred             CceEEEEEeCCCChhhhhhHH-HH--HHHHhhcC-CceEEEecCCCchhchhhhC--------CCCCCcEEEEEE-CCEE
Q psy12938        498 HITVIAHLSSPSLPACRALNS-SL--AELSRSHT-NVKFVSVPLGCVGDHFSATF--------KTSGLPAMLAYR-GGEV  564 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~-~l--~~LA~~~~-~vkF~ki~~~~~~d~~~~~~--------~i~~lPtllvyk-~G~~  564 (612)
                      +.+|+|+||++||++|+.|.+ .|  .++++.+. ++.|++||.+..+ .+...|        .+.++||+++|+ +|+.
T Consensus        39 ~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~-~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG~~  117 (173)
T 3ira_A           39 NKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERP-DIDNIYMTVCQIILGRGGWPLNIIMTPGKKP  117 (173)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCH-HHHHHHHHHHHHHHSCCCSSEEEEECTTSCE
T ss_pred             CCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccC-cHHHHHHHHHHHHcCCCCCcceeeECCCCCc
Confidence            448999999999999999998 33  46666553 5889999999776 676777        899999999997 9998


Q ss_pred             eeE
Q psy12938        565 VGN  567 (612)
Q Consensus       565 ~~~  567 (612)
                      +..
T Consensus       118 v~~  120 (173)
T 3ira_A          118 FFA  120 (173)
T ss_dssp             EEE
T ss_pred             eee
Confidence            875

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=98.65  E-value=5.6e-08  Score=88.38  Aligned_cols=72  Identities=19%  Similarity=0.282  Sum_probs=61.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCch-----------------------hchhhhCCCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVG-----------------------DHFSATFKTS  551 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~-----------------------d~~~~~~~i~  551 (612)
                      +.+|+|+||++||++|+.+.+.|.+++++|.   ++.|+.|+.+...                       ..+...|.+.
T Consensus        28 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (146)
T 1o8x_A           28 GKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVE  107 (146)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCCC
Confidence            4589999999999999999999999999987   6889988876421                       2567889999


Q ss_pred             CCcEEEEEE--CCEEeeEEE
Q psy12938        552 GLPAMLAYR--GGEVVGNFV  569 (612)
Q Consensus       552 ~lPtllvyk--~G~~~~~~v  569 (612)
                      .+||+++|.  +|+++.+..
T Consensus       108 ~~Pt~~lid~~~G~i~~~~~  127 (146)
T 1o8x_A          108 SIPTLIGVDADSGDVVTTRA  127 (146)
T ss_dssp             SSSEEEEEETTTCCEEESCH
T ss_pred             CCCEEEEEECCCCeEEEecc
Confidence            999999997  999888653

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=98.65  E-value=6.1e-08  Score=87.79  Aligned_cols=71  Identities=17%  Similarity=0.369  Sum_probs=60.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCch-----------------------hchhhhCCCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVG-----------------------DHFSATFKTS  551 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~-----------------------d~~~~~~~i~  551 (612)
                      +.+|+|+||++||++|+.+.+.|.+++++|+   ++.|+.|+.+...                       ..+...|.+.
T Consensus        28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  107 (144)
T 1i5g_A           28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVK  107 (144)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTCC
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCCC
Confidence            4589999999999999999999999999997   5889988877421                       2567899999


Q ss_pred             CCcEEEEEE--CCEEeeEE
Q psy12938        552 GLPAMLAYR--GGEVVGNF  568 (612)
Q Consensus       552 ~lPtllvyk--~G~~~~~~  568 (612)
                      .+|+++++.  +|+++.+.
T Consensus       108 ~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A          108 SIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             SSSEEEEEETTTCCEEESC
T ss_pred             CCCEEEEEECCCCcEEecc
Confidence            999999995  99988754

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.65  E-value=2.7e-08  Score=85.54  Aligned_cols=79  Identities=14%  Similarity=0.232  Sum_probs=62.9

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC--CchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG--CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~--~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      ....+|+.|+++||+.|+.+.+.|++|+..   +.|.++|++  ..+ ++..+|. ..+|+|  |++|+.+ .+.     
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~~~---i~~~~vdi~~~~~~-el~~~~g-~~vP~l--~~~g~~~-~~~-----   80 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDR---FILQEVDITLPENS-TWYERYK-FDIPVF--HLNGQFL-MMH-----   80 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSS---SEEEEEETTSSTTH-HHHHHSS-SSCSEE--EESSSEE-EES-----
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhhhC---CeEEEEECCCcchH-HHHHHHC-CCCCEE--EECCEEE-Eec-----
Confidence            345688899999999999999999988654   899999987  554 7788999 999976  6798865 122     


Q ss_pred             ccCCCCHHHHHHHHHHC
Q psy12938        575 LGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~  591 (612)
                         ++..+.|+.+|.++
T Consensus        81 ---g~~~~~l~~~l~~~   94 (100)
T 1wjk_A           81 ---RVNTSKLEKQLRKL   94 (100)
T ss_dssp             ---SCCHHHHHHHHHSS
T ss_pred             ---CCCHHHHHHHHHHH
Confidence               25668999999643

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.65  E-value=6.3e-08  Score=107.51  Aligned_cols=79  Identities=15%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY  579 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~  579 (612)
                      ..|+.||++||++|+.+.+.|+++|.+|++++|.+||.+..+ +++++|.++.+||+++  ||+.+..  |.       .
T Consensus       119 ~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~-~~~~~~~i~svPt~~i--~g~~~~~--G~-------~  186 (521)
T 1hyu_A          119 FEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQ-NEITERNVMGVPAVFV--NGKEFGQ--GR-------M  186 (521)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCH-HHHHHTTCCSSSEEEE--TTEEEEE--SC-------C
T ss_pred             cceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhH-HHHHHhCCCccCEEEE--CCEEEec--CC-------C
Confidence            678999999999999999999999999999999999999887 7889999999999988  9998864  43       3


Q ss_pred             CHHHHHHHHHH
Q psy12938        580 FVEDVEAFLVE  590 (612)
Q Consensus       580 ~~~~lE~~L~~  590 (612)
                      ..++|..+|.+
T Consensus       187 ~~~~l~~~l~~  197 (521)
T 1hyu_A          187 TLTEIVAKVDT  197 (521)
T ss_dssp             CHHHHHHHHCC
T ss_pred             CHHHHHHHHhh
Confidence            44777777643

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.64  E-value=2.2e-08  Score=86.81  Aligned_cols=60  Identities=28%  Similarity=0.326  Sum_probs=51.5

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..|.|.|+..||||+|.|   +.+..  .+++||.+|.++|+|+++|+|++||    |||.++.+++|.
T Consensus         8 ~~v~l~k~~~glG~~i~g---g~~~~--~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~   71 (103)
T 1ufx_A            8 TLVRVKKSAATLGIAIEG---GANTR--QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHR   71 (103)
T ss_dssp             EEEEEECCSSSCCEEEEC---BTTSS--CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHH
T ss_pred             EEEEEEcCCCcCCeEEEC---CCCCC--CCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            458889999999999999   55532  2456999999999999999999999    899999998773

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.64  E-value=1.5e-08  Score=91.10  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=57.4

Q ss_pred             ceeEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeee-ecccc
Q psy12938        310 KLTLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSII-GMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~-g~~~~  378 (612)
                      ..++.+|.|.|+. .||||+|.|   +.+...++.|+||..|.+||+|++.|+|++||    |||.++. ++++.
T Consensus        23 ~~~~~~v~l~k~~~~~lG~~i~g---~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~   94 (128)
T 2db5_A           23 GRQIEYIDIERPSTGGLGFSVVA---LRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQ   94 (128)
T ss_dssp             TCEEEEEEEECCSSSCCCCEEEE---EECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHH
T ss_pred             cCceEEEEEEECCCCccCEEEec---ccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHH
Confidence            4577889999997 699999999   56555566799999999999999999999999    8999997 87764

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.64  E-value=3.7e-08  Score=90.67  Aligned_cols=75  Identities=15%  Similarity=0.201  Sum_probs=64.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCchh----------------------chhhhCCCCCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVGD----------------------HFSATFKTSGL  553 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~d----------------------~~~~~~~i~~l  553 (612)
                      +.+|+|.||++||++|+.+.+.|.+++++|.+  +.|+.|+.+....                      .+...|.+..+
T Consensus        35 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~  114 (152)
T 2lrt_A           35 GKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYNVTNL  114 (152)
T ss_dssp             GSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHTCCSC
T ss_pred             CCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcCcccC
Confidence            44899999999999999999999999999964  9999998775431                      16788999999


Q ss_pred             cEEEEE-ECCEEeeEEEecc
Q psy12938        554 PAMLAY-RGGEVVGNFVRLG  572 (612)
Q Consensus       554 Ptllvy-k~G~~~~~~vg~~  572 (612)
                      |+++++ ++|+++..+.|..
T Consensus       115 P~~~lid~~G~i~~~~~g~~  134 (152)
T 2lrt_A          115 PSVFLVNRNNELSARGENIK  134 (152)
T ss_dssp             SEEEEEETTTEEEEETTTCS
T ss_pred             ceEEEECCCCeEEEecCCHH
Confidence            999999 7999999877653

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=98.64  E-value=1.3e-08  Score=88.93  Aligned_cols=64  Identities=28%  Similarity=0.459  Sum_probs=54.4

Q ss_pred             eeEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        311 LTLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       311 ~~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .++++|.|.|.. .||||+|.|   +.+. ..+.|+||.+|.+||+|+++|+|++||    |||.++.+++|.
T Consensus         4 ~~~~~v~l~k~~~~~lG~~i~g---~~~~-~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~   72 (108)
T 3cbz_A            4 MNIITVTLNMEKYNFLGISIVG---QSNE-RGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSND   72 (108)
T ss_dssp             CCEEEEEECHHHHCCCCEEEEE---ECSS-TTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHH
T ss_pred             ceEEEEEEEeCCCCccCEEEEc---CcCC-CCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHH
Confidence            467889999854 899999999   4432 246799999999999999999999999    899999998764

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=98.64  E-value=6.7e-08  Score=90.42  Aligned_cols=72  Identities=18%  Similarity=0.366  Sum_probs=61.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCch-----------------------hchhhhCCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVG-----------------------DHFSATFKT  550 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~-----------------------d~~~~~~~i  550 (612)
                      ++.+|||.||++||++|+.+.+.|.+|+++|+   +++|+.|+.+...                       ..+...|.+
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            34589999999999999999999999999996   4889988876541                       257789999


Q ss_pred             CCCcEEEEEE--CCEEeeEE
Q psy12938        551 SGLPAMLAYR--GGEVVGNF  568 (612)
Q Consensus       551 ~~lPtllvyk--~G~~~~~~  568 (612)
                      ..+||+++|.  +|+++.+.
T Consensus       127 ~~~Pt~~lid~~~G~iv~~~  146 (165)
T 3s9f_A          127 ESIPTLIGLNADTGDTVTTR  146 (165)
T ss_dssp             CSSSEEEEEETTTCCEEESC
T ss_pred             CCCCEEEEEeCCCCEEEecc
Confidence            9999999998  49988854

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.64  E-value=5.8e-08  Score=95.40  Aligned_cols=72  Identities=11%  Similarity=0.063  Sum_probs=61.5

Q ss_pred             eEEEEEe-----CCCChhhhhhHHHHHHHHhhc---CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEec
Q psy12938        500 TVIAHLS-----SPSLPACRALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRL  571 (612)
Q Consensus       500 ~Vvvhfy-----~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~  571 (612)
                      +|+|.||     ++||++|+.+.+.++++|+++   +.++|.+||.+..+ .+..+|++.++|||++|++|....++.|.
T Consensus        22 ~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Ptl~~~~~~~~~~~~~G~  100 (229)
T 2ywm_A           22 PVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHK-EETEKYGVDRVPTIVIEGDKDYGIRYIGL  100 (229)
T ss_dssp             CEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCH-HHHHHTTCCBSSEEEEESSSCCCEEEESC
T ss_pred             CeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccH-HHHHHcCCCcCcEEEEECCCcccceecCC
Confidence            3555555     889999999999999998776   46999999998776 78899999999999999998888888886


Q ss_pred             c
Q psy12938        572 G  572 (612)
Q Consensus       572 ~  572 (612)
                      .
T Consensus       101 ~  101 (229)
T 2ywm_A          101 P  101 (229)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.64  E-value=3.2e-08  Score=83.12  Aligned_cols=60  Identities=28%  Similarity=0.501  Sum_probs=51.9

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.++|.|.|+..||||++.|   +.+.   ..++||..|.++|+|++.|+|++||    |||.++.++++
T Consensus         2 ~~~~v~l~~~~~g~G~~~~~---g~~~---~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~   65 (90)
T 2q9v_A            2 MEQDIFLWRKETGFGFRILG---GNEP---GEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH   65 (90)
T ss_dssp             EEEEEEEECBTTBCCEEEEE---CSST---TSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCH
T ss_pred             CcEEEEEEECCCccCEEEEc---cccC---CCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            34679999999999999999   5442   3479999999999999999999999    89999988665

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.63  E-value=1e-08  Score=91.45  Aligned_cols=64  Identities=33%  Similarity=0.501  Sum_probs=52.0

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+++|.|.|+. .||||+|.|   |.+....+.|+||.+|.+||+|++.|.|++||    |||.++.++++.
T Consensus        24 ~~~~v~l~k~~~~~lGf~i~g---g~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~   92 (120)
T 2iwo_A           24 GLRTVEMKKGPTDSLGISIAG---GVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHT   92 (120)
T ss_dssp             -CEEEEEEC----CCCEEEEE---EEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHH
T ss_pred             CcEEEEEEcCCCCCCCEEEec---ccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHH
Confidence            56779999998 499999999   55544456799999999999999997799999    999999997663

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=98.63  E-value=5.9e-08  Score=87.67  Aligned_cols=71  Identities=24%  Similarity=0.433  Sum_probs=60.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCch-----------------------hchhhhCCCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVG-----------------------DHFSATFKTS  551 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~-----------------------d~~~~~~~i~  551 (612)
                      +.+|+|+||++||++|+.+.+.|.+++++|+   ++.|+.|+.+...                       ..+...|.+.
T Consensus        28 gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  107 (144)
T 1o73_A           28 GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVE  107 (144)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTCC
T ss_pred             CCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCCC
Confidence            4589999999999999999999999999987   6888888877421                       1467889999


Q ss_pred             CCcEEEEEE--CCEEeeEE
Q psy12938        552 GLPAMLAYR--GGEVVGNF  568 (612)
Q Consensus       552 ~lPtllvyk--~G~~~~~~  568 (612)
                      .+||++++.  +|+++...
T Consensus       108 ~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A          108 SIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             SSSEEEEEETTTCCEEESC
T ss_pred             CCCEEEEEECCCCeEEecc
Confidence            999999998  89988754

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=7e-08  Score=88.12  Aligned_cols=73  Identities=11%  Similarity=0.237  Sum_probs=63.1

Q ss_pred             CCceEEEEEeCCCChh--hhhhHHHHHHHHhhc---CCceEEEecCCCch------------------------hchhhh
Q psy12938        497 RHITVIAHLSSPSLPA--CRALNSSLAELSRSH---TNVKFVSVPLGCVG------------------------DHFSAT  547 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~--C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~------------------------d~~~~~  547 (612)
                      ++.+|+|+||++||++  |+.+.+.|.+++++|   .++.|+.|+.+..+                        ..+...
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            3568999999999999  999999999999998   45999999877432                        156788


Q ss_pred             CCCCCCcEEEEE-ECCEEeeEEE
Q psy12938        548 FKTSGLPAMLAY-RGGEVVGNFV  569 (612)
Q Consensus       548 ~~i~~lPtllvy-k~G~~~~~~v  569 (612)
                      |.+..+|+++++ ++|+++..++
T Consensus       112 ~~v~~~P~~~lid~~G~i~~~~~  134 (150)
T 3fw2_A          112 YSIYKIPANILLSSDGKILAKNL  134 (150)
T ss_dssp             TTCCSSSEEEEECTTSBEEEESC
T ss_pred             cCCCccCeEEEECCCCEEEEccC
Confidence            999999999999 8999998764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.63  E-value=4.4e-08  Score=88.70  Aligned_cols=83  Identities=12%  Similarity=0.080  Sum_probs=66.7

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch-------------------------hchhhhCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG-------------------------DHFSATFK  549 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~-------------------------d~~~~~~~  549 (612)
                      ++.+|+|+||++||++|+.+.+.|.++.++|+  ++.|+.|+.+...                         ..+...|.
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            45689999999999999999999999999996  4999998776321                         13557899


Q ss_pred             CCCCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        550 TSGLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       550 i~~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      +..+|+++++. +|+++.+.++          .++++.+|.
T Consensus       111 v~~~P~~~lid~~G~i~~~~~~----------~~~l~~~l~  141 (143)
T 4fo5_A          111 LRKGFKNFLINDEGVIIAANVT----------PEKLTEILK  141 (143)
T ss_dssp             GGGCCCEEEECTTSBEEEESCC----------HHHHHHHHT
T ss_pred             CCCCCcEEEECCCCEEEEccCC----------HHHHHHHHH
Confidence            99999888775 9999886432          377888875

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=98.62  E-value=3.5e-08  Score=84.10  Aligned_cols=64  Identities=23%  Similarity=0.441  Sum_probs=54.1

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCC-CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGL-EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~-~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++.++|.|.|+..||||+|.+   +.+... ...|++|..|.+||+|++.|+|++||    |||.++.++++
T Consensus         2 ~~~~~v~l~k~~~~lG~~i~~---~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~   70 (97)
T 2jil_A            2 MRTVEVTLHKEGNTFGFVIRG---GAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTH   70 (97)
T ss_dssp             EEEEEEEEECBTTBCSEEEEE---ECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCH
T ss_pred             ceEEEEEEEeCCCccCEEEeC---cccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            456789999999999999999   544321 35699999999999999999999999    89999998655

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.62  E-value=5.8e-08  Score=97.07  Aligned_cols=69  Identities=13%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             ceEEEEEeCCC--ChhhhhhHHHHHHHHhhcCC------ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEe
Q psy12938        499 ITVIAHLSSPS--LPACRALNSSLAELSRSHTN------VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVR  570 (612)
Q Consensus       499 ~~Vvvhfy~~~--~~~C~~m~~~l~~LA~~~~~------vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg  570 (612)
                      .+|+|+||++|  |+.|+.|.+.|++||+.++.      ++|+++|++..+ .+..+|.++.+|||++| +|  ..++.|
T Consensus        26 ~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~-~~~~~~gv~~~Pt~~i~-~g--~~~~~G  101 (243)
T 2hls_A           26 NPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDS-DKFSEFKVERVPTVAFL-GG--EVRWTG  101 (243)
T ss_dssp             SCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTH-HHHHHTTCCSSSEEEET-TT--TEEEES
T ss_pred             CCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCH-HHHHhcCCCcCCEEEEE-CC--ceeEcC
Confidence            37999999999  99999999999999999876      999999998776 68899999999999999 77  666777


Q ss_pred             c
Q psy12938        571 L  571 (612)
Q Consensus       571 ~  571 (612)
                      .
T Consensus       102 ~  102 (243)
T 2hls_A          102 I  102 (243)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.61  E-value=2.9e-08  Score=86.07  Aligned_cols=64  Identities=33%  Similarity=0.438  Sum_probs=55.3

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCC---CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAG---LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~---~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.++|.|.|+..||||+|.|   +.++.   .++.|+||..|.++|+|++.|+|++||    |||.++.++++
T Consensus         6 ~~~~~v~l~~~~~glG~~l~~---g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   76 (105)
T 1wha_A            6 SGRHVACLARSERGLGFSIAG---GKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARH   76 (105)
T ss_dssp             CEEEEEEECCCTTCCSCEEEC---CTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCH
T ss_pred             CeeEEEEEEeCCCccCEEEEe---ccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            467789999999999999999   55532   245799999999999999999999999    89999998765

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=98.60  E-value=4.2e-08  Score=81.44  Aligned_cols=58  Identities=22%  Similarity=0.465  Sum_probs=50.8

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++|+|.|+..||||++.+   +.+   ...|+||..|.+||+|++.|+|++||    |||.++.++++
T Consensus         2 ~~v~l~k~~~g~G~~i~~---~~~---~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   63 (85)
T 2i04_A            2 IHTKLRKSSRGFGFTVVG---GDE---PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH   63 (85)
T ss_dssp             EEEEEECBTTBSSEEEEE---CCS---TTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             EEEEEEECCCCCCEEEEc---ccC---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            468999999999999999   433   34589999999999999999999999    89999988655

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.58  E-value=6.4e-08  Score=86.56  Aligned_cols=66  Identities=33%  Similarity=0.411  Sum_probs=56.9

Q ss_pred             hccceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        307 RVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       307 ~~~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .....++++|.|.|+..||||+|.|   +.+.  ...|+||..|.+||+|++.|+|++||    |||.++.++++
T Consensus        20 ~~~~~~~~~v~l~k~~~glG~~l~~---~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~   89 (124)
T 2daz_A           20 ADLPGELHIIELEKDKNGLGLSLAG---NKDR--SRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSH   89 (124)
T ss_dssp             TTSSSEEEEEEEECCSSCCCEEEEC---BSST--TSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCH
T ss_pred             ccCCCceEEEEEEeCCCccCEEEec---cCCC--CcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3445678899999999999999999   5443  24699999999999999999999999    89999988766

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.58  E-value=5.7e-08  Score=84.49  Aligned_cols=65  Identities=31%  Similarity=0.455  Sum_probs=54.6

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCC-----CCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADA-----GLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~-----~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.++|.|.|+..||||+|.|   +.+.     ...+.|+||.+|.++|+|++.|.|++||    |||.++.++++
T Consensus         6 ~~~~~~v~l~k~~~~lG~~i~g---~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~   79 (107)
T 1uhp_A            6 SGKSLTLVLHRDSGSLGFNIIG---GRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATH   79 (107)
T ss_dssp             SSEEEEEEECCSSSCCSEEEEC---CCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCH
T ss_pred             CcEEEEEEEEeCCCccCEEEEc---CCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3467889999999999999999   4432     1135699999999999999996699999    89999988766

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.57  E-value=2.5e-07  Score=87.57  Aligned_cols=88  Identities=18%  Similarity=0.257  Sum_probs=67.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc-h---hchhhhCCCC--------------------
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV-G---DHFSATFKTS--------------------  551 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~-~---d~~~~~~~i~--------------------  551 (612)
                      +.+|+++||++||+.|+.+.+.|.+++++|.  ++.|+.|+.+.. +   ..+.+++.+.                    
T Consensus        60 gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  139 (186)
T 1jfu_A           60 GKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIG  139 (186)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTTT
T ss_pred             CCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhcccc
Confidence            4589999999999999999999999999986  699999887632 0   1234555553                    


Q ss_pred             ---CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        552 ---GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       552 ---~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                         ++|+++++ ++|+++..+.|...     ...++|+.+|.+
T Consensus       140 ~~~~~P~~~lid~~G~i~~~~~g~~~-----~~~~~l~~~l~~  177 (186)
T 1jfu_A          140 RALGMPTSVLVDPQGCEIATIAGPAE-----WASEDALKLIRA  177 (186)
T ss_dssp             CCSSSSEEEEECTTSBEEEEEESCCC-----TTSHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCEEEEEecCCc-----cCHHHHHHHHHH
Confidence               89999998 89999999987632     233566666653

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=8.1e-08  Score=85.32  Aligned_cols=64  Identities=38%  Similarity=0.612  Sum_probs=55.0

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ...++|.|.|+..||||+|.+   +.+...  ...|+||..|.++++|++.|+|++||    |||.++.++++
T Consensus        16 ~~~~~v~l~r~~~~lG~~i~~---~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~   85 (120)
T 2eno_A           16 VTEEEINLTRGPSGLGFNIVG---GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLH   85 (120)
T ss_dssp             EEEEEEEEECCSSSCSEEEEC---CTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCH
T ss_pred             CceEEEEEEECCCCCCEEEec---ccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            356779999999999999999   554322  35699999999999999999999999    89999998764

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=98.57  E-value=3e-08  Score=87.66  Aligned_cols=66  Identities=32%  Similarity=0.474  Sum_probs=55.9

Q ss_pred             cceeEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeee-eccc
Q psy12938        309 EKLTLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSII-GMGV  377 (612)
Q Consensus       309 ~~~~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~-g~~~  377 (612)
                      ....+++|.|.|.. .||||+|.|   +.+....+.|+||.+|.+||+|++.|+|++||    |||.++. ++++
T Consensus        17 ~~~~~~~v~l~k~~~~~lG~~i~~---~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~   88 (117)
T 2o2t_A           17 QGRHVEVFELLKPPSGGLGFSVVG---LRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITH   88 (117)
T ss_dssp             TTSCEEEEEEECCSSSCSSCCEEE---EECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCH
T ss_pred             cCCeEEEEEEEECCCCCCCEEEee---cccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCH
Confidence            44678899999985 889999999   55544456799999999999999999999999    8999998 7765

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.56  E-value=1.2e-07  Score=99.96  Aligned_cols=75  Identities=12%  Similarity=0.041  Sum_probs=63.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc--------------------------hhchhhhCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV--------------------------GDHFSATFK  549 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~--------------------------~d~~~~~~~  549 (612)
                      ..+|||+||++||++|+.+.+.|.+|+++|+  +++|+.|+.+..                          ...+...|.
T Consensus        82 GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~yg  161 (352)
T 2hyx_A           82 GKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNYR  161 (352)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHTT
T ss_pred             CCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHcC
Confidence            4589999999999999999999999999996  499999975421                          014667899


Q ss_pred             CCCCcEEEEE-ECCEEeeEEEecc
Q psy12938        550 TSGLPAMLAY-RGGEVVGNFVRLG  572 (612)
Q Consensus       550 i~~lPtllvy-k~G~~~~~~vg~~  572 (612)
                      +..+|+++++ ++|+++..+.|..
T Consensus       162 V~~~Pt~~lID~~G~Iv~~~~G~~  185 (352)
T 2hyx_A          162 NRYWPAEYLIDATGTVRHIKFGEG  185 (352)
T ss_dssp             CCEESEEEEECTTSBEEEEEESBC
T ss_pred             CCccCEEEEEeCCCeEEEEEcCCC
Confidence            9999998888 9999999998853

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.56  E-value=3.8e-08  Score=85.06  Aligned_cols=63  Identities=27%  Similarity=0.498  Sum_probs=54.3

Q ss_pred             cceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        309 EKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       309 ~~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..++.++|.|.|+..||||+|.+   +.+   ...++||.+|.++|+|++.|+|++||    |||.++.++++
T Consensus         6 ~~~~~~~v~l~~~~~g~G~~i~~---g~~---~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~   72 (103)
T 1uep_A            6 SGYKELDVHLRRMESGFGFRILG---GDE---PGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTH   72 (103)
T ss_dssp             SSEEEECCEEESSSSSCCEEECC---CCS---TTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCH
T ss_pred             CCceEEEEEEEeCCCccCEEEee---ecC---CCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCH
Confidence            34567779999999999999998   443   24589999999999999999999999    89999988665

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.56  E-value=4.3e-08  Score=85.24  Aligned_cols=62  Identities=32%  Similarity=0.486  Sum_probs=46.5

Q ss_pred             EEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       316 v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+..+..+|||+|.| |.+.....++.|+||..|.+||+|++.|+|++||    |||.++.++++.
T Consensus         6 ~~~~~~~~~~Gf~i~g-G~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~   71 (106)
T 4amh_A            6 HLVPRGSKGLGFSIAG-GVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHE   71 (106)
T ss_dssp             ------CCCSCEEEEE-CTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHH
T ss_pred             ccCCCCCCccCEEEEe-ccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            3445566899999999 3333322256699999999999999999999999    899999887663

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.56  E-value=7.5e-08  Score=81.71  Aligned_cols=60  Identities=30%  Similarity=0.476  Sum_probs=51.9

Q ss_pred             eeEEEEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +++++|.|.|..  .||||+|.+   +.+    ..|+||.+|.+||+|++.|+|++||    |||.++.++++
T Consensus         2 ~~~~~v~l~k~~~~~~lG~~~~~---~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   67 (95)
T 2vwr_A            2 MEILQVALHKRDSGEQLGIKLVR---RTD----EPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTP   67 (95)
T ss_dssp             EEEEEEEEECSSTTCCCCEEEEE---CSS----SCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             cEEEEEEEEECCCCCcccEEEEe---ccC----CCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            467889999964  689999998   433    3589999999999999999999999    89999988655

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.55  E-value=5.5e-08  Score=82.28  Aligned_cols=60  Identities=27%  Similarity=0.320  Sum_probs=52.2

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+..|.|.|+..||||++.+   +.    .+.++||.+|.+||+|++.|+|++||    |||.++.++++.
T Consensus         4 ~~r~v~l~k~~~~lG~~i~~---~~----~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~   67 (93)
T 3o46_A            4 SVKIIRLVKNREPLGATIKK---DE----QTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPE   67 (93)
T ss_dssp             CCEEEEEEESSSCCCEEEEE---CT----TTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHH
T ss_pred             cEEEEEEEeCCCCccEEEEe---cC----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            45679999999999999999   31    24589999999999999999999999    999999887763

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.54  E-value=4.4e-08  Score=100.39  Aligned_cols=73  Identities=8%  Similarity=0.079  Sum_probs=55.8

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEec---C-CCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVP---L-GCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~---~-~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      .+|.||++||++|+.+.|.|+++|++++   ++.++   . ++.+ ++.++|+++++||+++  ||+.   +.|..+   
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~---~Vd~d~~d~~~~~~-~la~~~gI~~vPT~~i--~G~~---~~G~~~---  267 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVP---YVECSPNGPGTPQA-QECTEAGITSYPTWII--NGRT---YTGVRS---  267 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSC---EEESCSSCSSSCCC-HHHHTTTCCSTTEEEE--TTEE---EESCCC---
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcC---EEEEeecCchhhHH-HHHHHcCCcccCeEEE--CCEE---ecCCCC---
Confidence            4689999999999999999999998875   45554   3 3243 6889999999999655  9974   555533   


Q ss_pred             CCCCHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLV  589 (612)
Q Consensus       577 ~~~~~~~lE~~L~  589 (612)
                          .++|++++.
T Consensus       268 ----~~~L~~~l~  276 (291)
T 3kp9_A          268 ----LEALAVASG  276 (291)
T ss_dssp             ----HHHHHHHTC
T ss_pred             ----HHHHHHHHC
Confidence                377777763

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.54  E-value=1.3e-07  Score=89.22  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=59.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC-----------------------chhchhhhCCCCCCc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC-----------------------VGDHFSATFKTSGLP  554 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~-----------------------~~d~~~~~~~i~~lP  554 (612)
                      +.+|||.||++||++|+.+.+.|.+++++  ++.|+.|+.+.                       .. .+...|.+..+|
T Consensus        58 gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v~~~P  134 (176)
T 3kh7_A           58 GKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADG-TLGLDLGVYGAP  134 (176)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTC-HHHHHHTCCSSC
T ss_pred             CCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcc-hHHHHcCCCCCC
Confidence            45899999999999999999999999988  78999887421                       11 456789999999


Q ss_pred             EEEEE-ECCEEeeEEEecc
Q psy12938        555 AMLAY-RGGEVVGNFVRLG  572 (612)
Q Consensus       555 tllvy-k~G~~~~~~vg~~  572 (612)
                      +++++ ++|+++..+.|..
T Consensus       135 ~~~lid~~G~i~~~~~g~~  153 (176)
T 3kh7_A          135 ETYLIDKQGIIRHKIVGVV  153 (176)
T ss_dssp             EEEEECTTCBEEEEEESCC
T ss_pred             eEEEECCCCeEEEEEcCCC
Confidence            65555 8999999998863

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.53  E-value=6.2e-08  Score=87.64  Aligned_cols=64  Identities=20%  Similarity=0.292  Sum_probs=53.2

Q ss_pred             eEEEEEEeeC----------CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKG----------AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~----------~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+..+.|.|.          ..+|||+|.|   |.+...++.|+||.+|.+||+|+++|+|++||    |||.++.+++|
T Consensus        27 ~i~~v~l~~~~~~~~i~k~~~~~lG~~i~g---g~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~  103 (131)
T 1wfg_A           27 LIGRILLNKRLKDGSVPRDSGAMLGLKVVG---GKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATF  103 (131)
T ss_dssp             EEEEEEEECSCTTSCCCSCSCTTTTEEEEE---EEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCH
T ss_pred             eeeEEEEeccceeEEEecCCCCCCCEEEec---CccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3455677665          4789999999   55555567799999999999999999999999    89999998766


Q ss_pred             c
Q psy12938        378 G  378 (612)
Q Consensus       378 ~  378 (612)
                      .
T Consensus       104 ~  104 (131)
T 1wfg_A          104 E  104 (131)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.53  E-value=1.9e-07  Score=88.66  Aligned_cols=70  Identities=10%  Similarity=0.148  Sum_probs=60.3

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCC-----------------------------Cchhchhh
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLG-----------------------------CVGDHFSA  546 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~-----------------------------~~~d~~~~  546 (612)
                      +..+|||+||++||+.|+.+.+.|.+|+++|.+ +.|+.|+.+                             ... .+..
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~-~~~~  110 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQ-EVAK  110 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSS-HHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcc-hHHH
Confidence            345899999999999999999999999999977 999999863                             122 4678


Q ss_pred             hCCCCCCcEEEEE-ECCEEeeE
Q psy12938        547 TFKTSGLPAMLAY-RGGEVVGN  567 (612)
Q Consensus       547 ~~~i~~lPtllvy-k~G~~~~~  567 (612)
                      .|.+..+|+++++ ++|+++..
T Consensus       111 ~~~v~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A          111 AYRALRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             HTTCCEESEEEEECTTCBEEEE
T ss_pred             HcCCCCCCeEEEECCCCcEEEE
Confidence            8999999999999 89998876

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.52  E-value=6.2e-08  Score=85.76  Aligned_cols=64  Identities=19%  Similarity=0.450  Sum_probs=53.8

Q ss_pred             eEEEEEEeeCC-------CCcceEEEeccCCCCCC--CCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGA-------EGLGLSIIGMGVGADAG--LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~-------~glG~si~g~~~g~~~~--~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ...+|.|.|..       .||||+|.|   +.+.+  .+..|+||.+|.++|+|++.|+|++||    |||.++.+++|.
T Consensus        12 ~~~~v~l~r~~~~~~~~~~glG~~i~g---~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~   88 (117)
T 1ujd_A           12 PHARIKITRDSKDHTVSGNGLGIRIVG---GKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYE   88 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEE---EEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHH
T ss_pred             ceEEEEEEecCcccCCCCCcccEEEeC---CCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHH
Confidence            44568899987       799999999   44432  245699999999999999999999999    999999997763

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.52  E-value=9.7e-08  Score=78.11  Aligned_cols=62  Identities=15%  Similarity=0.195  Sum_probs=51.7

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCC-CchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLG-CVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~-~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      -++-||++||++|+.+.+.|+++++++. .++|++|+.+ ... .+..+|.++.+||+++  ||+.+
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~gv~~vPt~~i--~g~~~   66 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARI-AEAEKAGVKSVPALVI--DGAAF   66 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTH-HHHHHHTCCEEEEEEE--TTEEE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhH-HHHHHcCCCcCCEEEE--CCEEE
Confidence            3667999999999999999999998874 5778888865 333 5778999999999987  99865

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.51  E-value=1.2e-07  Score=90.51  Aligned_cols=68  Identities=13%  Similarity=0.215  Sum_probs=58.5

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC-----------------------------CchhchhhhC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG-----------------------------CVGDHFSATF  548 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~-----------------------------~~~d~~~~~~  548 (612)
                      +|||+||++||+.|+.+.+.|.+++++|.  ++.|+.|+.+                             ... .+...|
T Consensus        48 ~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~  126 (196)
T 2ywi_A           48 ATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQ-EVAKAY  126 (196)
T ss_dssp             EEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSC-HHHHHH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCch-HHHHHh
Confidence            59999999999999999999999999986  4999999873                             122 467889


Q ss_pred             CCCCCcEEEEE-ECCEEeeEE
Q psy12938        549 KTSGLPAMLAY-RGGEVVGNF  568 (612)
Q Consensus       549 ~i~~lPtllvy-k~G~~~~~~  568 (612)
                      .+..+|+++++ ++|+++...
T Consensus       127 ~v~~~P~~~lid~~G~i~~~~  147 (196)
T 2ywi_A          127 DAACTPDFYIFDRDLKCVYRG  147 (196)
T ss_dssp             TCCEESEEEEEETTCBEEEEE
T ss_pred             CCCCCCeEEEEcCCCeEEEcc
Confidence            99999999999 799998864

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.50  E-value=8e-08  Score=83.66  Aligned_cols=58  Identities=22%  Similarity=0.366  Sum_probs=50.5

Q ss_pred             eEEEEEEee-CCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k-~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +.++|+|.| ...||||++.+         .+.|++|.+|.+||+|++.|+|++||    |||.++.++++.
T Consensus         2 ~~~~v~L~k~~~~glG~~i~~---------~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~   64 (106)
T 2la8_A            2 EKFNVDLMKKAGKELGLSLSP---------NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQ   64 (106)
T ss_dssp             EEEEEEECCBSSSTTCCEEEE---------CSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHH
T ss_pred             eEEEEEEEeCCCCccCEEEEe---------CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            578899985 45899999988         34589999999999999999999999    899999987653

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.50  E-value=1.2e-07  Score=84.78  Aligned_cols=63  Identities=30%  Similarity=0.485  Sum_probs=54.4

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+.++|.|.|+..||||+|.|   +.+   .+.|+||..|.++|+|++.|+|++||    |||..+.++++.
T Consensus        17 ~~~~~~v~l~~~~~glG~~~~~---g~~---~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~   83 (123)
T 1ueq_A           17 KGTFLSTTLKKSNMGFGFTIIG---GDE---PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHA   83 (123)
T ss_dssp             CSEEEEEEEECCTTSCSEEEEC---CSS---SSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHH
T ss_pred             CCcEEEEEEEeCCCceeEEEec---ccC---CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            3467789999999999999998   443   34589999999999999999999999    899999987653

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.50  E-value=9.7e-08  Score=83.82  Aligned_cols=62  Identities=29%  Similarity=0.542  Sum_probs=53.2

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.++|.|.|+..||||+|.+   +.+   ...|++|..|.+||+|++.|+|++||    |||.++.++++
T Consensus        22 ~~~~~~v~l~~~~~glG~~l~~---~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   87 (112)
T 2r4h_A           22 SMDFYTVELERGAKGFGFSLRG---GRE---YNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKH   87 (112)
T ss_dssp             -CCEEEEEEECBTTBTSEEEEE---CGG---GTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCH
T ss_pred             CCceEEEEEEcCCCccCEEEec---ccc---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3467789999999999999999   443   24589999999999999999999999    89999988654

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.50  E-value=3e-08  Score=89.19  Aligned_cols=63  Identities=35%  Similarity=0.578  Sum_probs=52.1

Q ss_pred             eEEEEEEe-eCCCCcceEEEeccCCCCCC-CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELM-KGAEGLGLSIIGMGVGADAG-LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~-k~~~glG~si~g~~~g~~~~-~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..++|.|. ++..||||+|.|   +.+.. ..+.||||.+|.+||+|+++|+|++||    |||.++.+++|
T Consensus        25 ~~~~v~l~k~~~~glG~~i~~---~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~   93 (127)
T 1wg6_A           25 LTLEIPLNDSGSAGLGVSLKG---NKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSN   93 (127)
T ss_dssp             EEEEEECSSSTTTCCCCEEEE---EEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCH
T ss_pred             eEEEEEEeeCCCCccCeEEec---ccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            45668887 566899999999   43321 135699999999999999999999999    89999999876

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=98.49  E-value=8.1e-08  Score=81.95  Aligned_cols=63  Identities=25%  Similarity=0.335  Sum_probs=52.8

Q ss_pred             eEEEEEEee-CCCCcceEEEeccCCCCCCC---CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMK-GAEGLGLSIIGMGVGADAGL---EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k-~~~glG~si~g~~~g~~~~~---~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.+|.|.| +..||||+|.+   +.+...   ...|++|..|.++|+|++.|+|++||    |||..+.++++
T Consensus         5 ~~~~v~l~k~~~~glG~~i~~---~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~   75 (98)
T 1ihj_A            5 LIHMVTLDKTGKKSFGICIVR---GEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTE   75 (98)
T ss_dssp             EEEEEEEECTTSSSCCEEEEE---EEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCH
T ss_pred             eEEEEEEEeCCCCCcCEEEec---cccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            356799999 66899999999   444332   35699999999999999999999999    89999988655

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=98.48  E-value=1.5e-07  Score=80.20  Aligned_cols=61  Identities=34%  Similarity=0.537  Sum_probs=52.6

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.++|.|.|+..||||+|.+   +.+..  ..|+||.+|.++|+|++.|+|++||    |||.++.++++
T Consensus         4 ~~~~v~l~~~~~~lG~~l~~---~~~~~--~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   68 (98)
T 2opg_A            4 CETTIEISKGRTGLGLSIVG---GSDTL--LGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATH   68 (98)
T ss_dssp             EEEEEEEECBTTBTCEEEEE---CTTST--TCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CEEEEEEEECCCcccEEEec---CCCCC--CCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCH
Confidence            45679999999999999999   54432  2489999999999999999999999    89999988654

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.47  E-value=1.2e-07  Score=79.77  Aligned_cols=60  Identities=33%  Similarity=0.524  Sum_probs=51.4

Q ss_pred             eeEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.++|.|.|.. .||||++.+   +.+    ..|+||.+|.+||+|++.|+|++||    |||.++.++++
T Consensus         3 ~~~~~v~l~k~~~~~lG~~~~~---~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   67 (92)
T 2qg1_A            3 SDTLTIGLQKKPGKGLGLSIVG---KRN----DTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQ   67 (92)
T ss_dssp             -CEEEEEEECCTTSCCSEEEEC---CSS----SCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCH
T ss_pred             ceEEEEEEEeCCCCcccEEEEe---ccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            457889999975 899999998   332    3589999999999999999999999    89999988654

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.47  E-value=1.2e-07  Score=83.70  Aligned_cols=63  Identities=25%  Similarity=0.399  Sum_probs=52.9

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCC------CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAG------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..++|.|.|+. .+|||+|.|   +.+..      ....|+||..|.++|+|++.|+|++||    |||.++.++++
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~g---g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~   88 (117)
T 2ehr_A           15 PPRIVEIFREPNVSLGISIVG---GQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASH   88 (117)
T ss_dssp             CCEEEEECCCSSSCCCEEECC---CCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCH
T ss_pred             CCEEEEEEeCCCCccCEEEeC---CcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            34669999985 899999999   54432      134699999999999999999999999    89999988765

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=98.47  E-value=1.5e-07  Score=81.84  Aligned_cols=65  Identities=38%  Similarity=0.547  Sum_probs=53.7

Q ss_pred             ceeEEEEEE--eeCCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVEL--MKGAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l--~k~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.++|.|  .+...||||+|.+   +.+...  .+.|++|..|.+|++|++.|+|++||    |||.++.++++
T Consensus        10 ~~~~~~v~l~r~~~~~~lG~~~~~---~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   82 (108)
T 2jre_A           10 GFSLYSVELFREKDTSSLGISISG---MRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQ   82 (108)
T ss_dssp             SCEEEEEEEECCSTTSCCSEEEEC---CCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCH
T ss_pred             CcEEEEEEEEecCCCCCcCEEEEc---ccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            356778999  5666899999999   544332  45699999999999999999999999    89999988654

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=98.46  E-value=2.1e-07  Score=81.30  Aligned_cols=65  Identities=34%  Similarity=0.459  Sum_probs=54.9

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.+.+.|.++..||||+|.+   +.+...+..|++|..|.+||+|++.|+|++||    |||.++.++++
T Consensus         9 ~~~~~~~~l~~~~~glG~~~~~---~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~   77 (111)
T 2koj_A            9 VGKRLNIQLKKGTEGLGFSITS---RDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQ   77 (111)
T ss_dssp             SCEEEEEEEECBTTBTCEEEEE---CSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCH
T ss_pred             cCcEEEEEEEECCCccCEEEEe---ccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            3456779999999999999999   44433345799999999999999999999999    89999987654

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=97.84  E-value=2e-08  Score=90.48  Aligned_cols=69  Identities=17%  Similarity=0.334  Sum_probs=59.0

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCch------------------------hchhhhCCCC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCVG------------------------DHFSATFKTS  551 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~~------------------------d~~~~~~~i~  551 (612)
                      +|+|+||++||++|+.+.+.|.+++++|    +++.|+.|+.+..+                        ..+...|.+.
T Consensus        28 ~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  107 (143)
T 2lus_A           28 IIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGIT  107 (143)
Confidence            7999999999999999999999999998    57888888766331                        1467789999


Q ss_pred             CCcEEEEEE-CCEEeeEE
Q psy12938        552 GLPAMLAYR-GGEVVGNF  568 (612)
Q Consensus       552 ~lPtllvyk-~G~~~~~~  568 (612)
                      .+|+++++. +|+++...
T Consensus       108 ~~P~~~lid~~G~i~~~~  125 (143)
T 2lus_A          108 GIPALVIVKKDGTLISMN  125 (143)
Confidence            999999997 99998863

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.46  E-value=9.4e-08  Score=82.18  Aligned_cols=88  Identities=18%  Similarity=0.327  Sum_probs=63.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC----chhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC----VGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~----~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      |+.|+++||+.|+.+.+.|+.++..|++..++.|+.+.    ..+.+...+.+..+|++  |.+|+.++.+-.+...   
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i--~~~g~~i~g~~~~~~~---   88 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGKECIGGCTDLESM---   88 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETTEEEESHHHHHHH---
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeE--EECCEEEeccHHHHHH---
Confidence            55699999999999999999998888766666665542    11246678899999997  6699887654322221   


Q ss_pred             CCCHHHHHHHHHHCCccc
Q psy12938        578 GYFVEDVEAFLVEAGLLR  595 (612)
Q Consensus       578 ~~~~~~lE~~L~~~g~l~  595 (612)
                       .....|+.+|...|+|+
T Consensus        89 -~~~g~L~~~l~~~g~~~  105 (105)
T 1kte_A           89 -HKRGELLTRLQQVGAVK  105 (105)
T ss_dssp             -HHHTHHHHHHHHHTCBC
T ss_pred             -HHCCcHHHHHHHcCCCC
Confidence             11267899999988874

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.45  E-value=1.1e-07  Score=85.76  Aligned_cols=61  Identities=21%  Similarity=0.430  Sum_probs=53.3

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.++|.|.|+..||||+|.|   +.+   ...|+||.+|.+||+|++.|+|++||    |||.++.+++|
T Consensus        17 g~~~~v~l~~~~~g~G~~i~g---~~~---~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~   81 (129)
T 2kpk_A           17 GKFIHTKLRKSSRGFGFTVVG---GDE---PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH   81 (129)
T ss_dssp             SEEEEEEEEECSSCCSEEEEE---EEE---TTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCH
T ss_pred             CcEEEEEEEECCCcccEEEeC---ccC---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            466789999999999999999   333   24589999999999999999999999    89999998765

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.44  E-value=1.7e-07  Score=84.28  Aligned_cols=66  Identities=30%  Similarity=0.478  Sum_probs=54.8

Q ss_pred             ceeEEEEEEee-CCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        310 KLTLLGVELMK-GAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k-~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+.++|.|.| ...||||+|.+   +.+...  ...|+||..|.+||+|++.|+|++||    |||.++.++++.
T Consensus        13 ~~~~~~v~l~~~~~~~lG~~i~~---~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~   85 (129)
T 2dmz_A           13 LFETYNVELVRKDGQSLGIRIVG---YVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANH   85 (129)
T ss_dssp             CEEEEEEEECCCTTCCCCEEEEE---ECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHH
T ss_pred             CCcEEEEEEEeCCCCCcCEEEEe---ecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            45778899965 66899999999   444333  45699999999999999999999999    899999987653

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.44  E-value=1.8e-07  Score=82.95  Aligned_cols=62  Identities=34%  Similarity=0.402  Sum_probs=51.9

Q ss_pred             eEEEEEEeeC-CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~-~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+..|.|.|. ..||||+|.|   +.+.  ...|+||..|.++|+|++.|+|++||    |||..+.++++.
T Consensus        15 ~~~~v~l~~~~~~~lG~~i~g---~~~~--~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~   81 (119)
T 1x6d_A           15 GIHVTILHKEEGAGLGFSLAG---GADL--ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHH   81 (119)
T ss_dssp             TEEEEEEECCTTSCCSEEEEC---CSSS--SCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHH
T ss_pred             CeEEEEEEeCCCCccCEEEeC---CCCC--CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            3566888885 5899999999   5543  24589999999999999999999999    899999987663

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=2.4e-08  Score=92.11  Aligned_cols=85  Identities=12%  Similarity=0.154  Sum_probs=64.5

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHH-HHhhcC---CceEEEecCCCchhchhhhCC------------------------
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAE-LSRSHT---NVKFVSVPLGCVGDHFSATFK------------------------  549 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~-LA~~~~---~vkF~ki~~~~~~d~~~~~~~------------------------  549 (612)
                      +.+|+|.||++||++|+.+.+.|.+ +..+|.   +++|+.|+.+..+ ....+|.                        
T Consensus        33 gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  111 (159)
T 2ls5_A           33 GKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPL-EKVLAFAKSTGVTYPLGLDPGADIFAKYALR  111 (159)
Confidence            4489999999999999999999998 888876   6999999876432 2233333                        


Q ss_pred             CCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        550 TSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       550 i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +.++|+++++ ++|+++..+.|+        +.++++.+|.+.
T Consensus       112 ~~~~P~~~lid~~G~i~~~~~g~--------~~~~l~~~l~~l  146 (159)
T 2ls5_A          112 DAGITRNVLIDREGKIVKLTRLY--------NEEEFASLVQQI  146 (159)
Confidence            5679999999 999999988764        224566666543

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.43  E-value=1.1e-07  Score=83.12  Aligned_cols=62  Identities=35%  Similarity=0.537  Sum_probs=51.8

Q ss_pred             EEEEEeeCC-CCcceEEEeccCCCCCC------CCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        314 LGVELMKGA-EGLGLSIIGMGVGADAG------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       314 ~~v~l~k~~-~glG~si~g~~~g~~~~------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ++|.|.|+. .+|||+|.|   +.+..      ....|+||..|.++|+|++.|+|++||    |||.++.++++.
T Consensus        11 ~~v~l~k~~~~~lG~~i~g---g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~   83 (111)
T 1uju_A           11 RELCIQKAPGERLGISIRG---GARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHG   83 (111)
T ss_dssp             SCEEEECCTTCCCCEEEEC---CSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHH
T ss_pred             EEEEEEECCCCccCEEEEC---CccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            448899987 899999999   44321      235699999999999999999999999    899999987663

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=98.42  E-value=2.2e-07  Score=78.11  Aligned_cols=58  Identities=21%  Similarity=0.318  Sum_probs=50.6

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +..+|.|.|++.||||++.+   +.+    ..|+||.+|.+||+|++.| |++||    |||.++.++++
T Consensus         3 ~~r~v~l~r~~~g~G~~~~~---~~~----~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   64 (91)
T 1g9o_A            3 LPRLCCLEKGPNGYGFHLHG---EKG----KLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETH   64 (91)
T ss_dssp             CCEEEEEECBTTBCCEEEEE---CTT----CSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             ccEEEEEEeCCCcccEEEEe---cCC----CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCH
Confidence            34569999999999999999   332    3589999999999999999 99999    89999998765

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.42  E-value=1.7e-07  Score=80.84  Aligned_cols=59  Identities=25%  Similarity=0.498  Sum_probs=51.4

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +...|.|.|+..||||+|.+   +.+    ..|+||..|.+||+|++.|+|++||    |||.++.++++
T Consensus        11 ~~~~v~l~k~~~glG~~~~~---~~~----~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   73 (104)
T 3i4w_A           11 EPRRIVIHRGSTGLGFNIVG---GEX----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH   73 (104)
T ss_dssp             SCEEEEEECBTTBTSEEEEE---CC-----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCH
T ss_pred             ccEEEEEEeCCCccCEEEEC---CCC----CCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            45679999999999999999   433    2489999999999999999999999    89999988665

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=98.41  E-value=2.1e-07  Score=78.05  Aligned_cols=58  Identities=22%  Similarity=0.269  Sum_probs=49.9

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +..|.|.|++ .+|||+|.+   +     ++.+++|.+|.+||+|++++.|++||    |||.++.++++.
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~---~-----~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~   64 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKM---N-----ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVE   64 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEEC---S-----CGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHH
T ss_pred             eEEEEEEeCCCCceeEEEEe---C-----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            3569999996 899999998   2     13479999999999999977799999    999999998774

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.41  E-value=2.6e-07  Score=78.42  Aligned_cols=47  Identities=21%  Similarity=0.302  Sum_probs=41.9

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCC--CceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~--~~v~l~v~R~~~   97 (612)
                      ..|.|++||+|++|||+++.+++|.+++++|++.+  .+++|++.+++.
T Consensus        43 r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p~~   91 (95)
T 3gge_A           43 SVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEPKK   91 (95)
T ss_dssp             HCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEECS
T ss_pred             hcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECccc
Confidence            34699999999999999999999999999999964  589999988765

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=98.41  E-value=2.4e-07  Score=78.91  Aligned_cols=61  Identities=26%  Similarity=0.331  Sum_probs=52.0

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .++++|.|.|...||||+|.+   +.+   ...|++|..|.+|++|++.|+|++||    |||.++.++++
T Consensus         4 ~~~~~v~l~~~~~~lG~~i~~---~~~---~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   68 (97)
T 1n7e_A            4 AIIYTVELKRYGGPLGITISG---TEE---PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPL   68 (97)
T ss_dssp             CCEEEEEEECTTSCCCEEEEC---CSS---TTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCH
T ss_pred             ceEEEEEEEeCCCCcCEEEEc---ccC---CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            457889999988889999998   332   12489999999999999999999999    89999987654

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=98.40  E-value=3.2e-07  Score=77.96  Aligned_cols=63  Identities=30%  Similarity=0.589  Sum_probs=52.9

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCC---CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGL---EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~---~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++.+++.+.+...||||+|.+   |.+...   ...|++|..|.+||+|++.| |++||    |||..+.++.+
T Consensus         2 ~~~~~v~~~~~~~glG~~i~~---g~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   71 (97)
T 2w4f_A            2 MEELTLTILRQTGGLGISIAG---GKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEH   71 (97)
T ss_dssp             -CEEEEEEECBTTBSSEEEEE---CTTSCCSBTTBCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             ceEEEEEEEeCCCceeEEEEC---CccCCcccCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCcCH
Confidence            355779999999999999999   554322   45699999999999999999 99999    89999988654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.40  E-value=7.1e-07  Score=82.90  Aligned_cols=75  Identities=17%  Similarity=0.131  Sum_probs=60.6

Q ss_pred             CCceEEEEEeCCCChh-hhhhHHHHHHHHhhc------CCceEEEecCCCc---h------------------------h
Q psy12938        497 RHITVIAHLSSPSLPA-CRALNSSLAELSRSH------TNVKFVSVPLGCV---G------------------------D  542 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~-C~~m~~~l~~LA~~~------~~vkF~ki~~~~~---~------------------------d  542 (612)
                      ++.+|||+||++||++ |+.+.+.|.+++++|      .+++|+.|..+..   +                        .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            3458999999999998 999999999999988      4799998877621   0                        0


Q ss_pred             chhhhCCCCCCc---------------E-EEEEECCEEeeEEEec
Q psy12938        543 HFSATFKTSGLP---------------A-MLAYRGGEVVGNFVRL  571 (612)
Q Consensus       543 ~~~~~~~i~~lP---------------t-llvyk~G~~~~~~vg~  571 (612)
                      .+...|.+...|               + +++.++|+++..+.|.
T Consensus       105 ~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~  149 (171)
T 2rli_A          105 QASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRS  149 (171)
T ss_dssp             HHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESS
T ss_pred             HHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCC
Confidence            356789998888               4 5666999999988764

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.39  E-value=4.1e-07  Score=77.11  Aligned_cols=62  Identities=29%  Similarity=0.404  Sum_probs=48.8

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .++|.|.|+. +|||+|.|+....+.+.  .+.|+||.+|.++|+|++ | |++||    |||.++.++++
T Consensus         4 ~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~   71 (95)
T 1mfg_A            4 EIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEH   71 (95)
T ss_dssp             EEEEEEECSS-SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCBH
T ss_pred             EEEEEECCCC-CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-C-CCCCCEEEEECCEEcCCCCH
Confidence            3568888887 89999999211112222  456999999999999999 6 99999    89999988665

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.38  E-value=9.1e-07  Score=81.96  Aligned_cols=70  Identities=9%  Similarity=0.096  Sum_probs=60.7

Q ss_pred             eEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCC---------------------chhchhhhCCCCC---
Q psy12938        500 TVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGC---------------------VGDHFSATFKTSG---  552 (612)
Q Consensus       500 ~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~---------------------~~d~~~~~~~i~~---  552 (612)
                      +||+.|| ++||++|+...+.|.+++++|.  ++.|+.|..+.                     .. .+...|.+.+   
T Consensus        31 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v~~~~~  109 (161)
T 3drn_A           31 NIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDK-KIRELYGAKGFIL  109 (161)
T ss_dssp             EEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTS-HHHHHTTCCCSSS
T ss_pred             CEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcH-HHHHHcCCCCcCc
Confidence            3999999 9999999999999999999995  49999988762                     22 5678899999   


Q ss_pred             -CcEEEEE-ECCEEeeEEEe
Q psy12938        553 -LPAMLAY-RGGEVVGNFVR  570 (612)
Q Consensus       553 -lPtllvy-k~G~~~~~~vg  570 (612)
                       +|+++++ ++|+++..+.|
T Consensus       110 ~~P~~~lid~~G~i~~~~~g  129 (161)
T 3drn_A          110 PARITFVIDKKGIIRHIYNS  129 (161)
T ss_dssp             CCCEEEEECTTSBEEEEEEC
T ss_pred             ccceEEEECCCCEEEEEEec
Confidence             9988877 79999999888

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.38  E-value=1.9e-07  Score=81.06  Aligned_cols=62  Identities=18%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             ceeEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccC-Cccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDG-RIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dg-rl~~gD----vng~~~~g~~~  377 (612)
                      ...+..|.|.|+. .+|||++.|   +.+   ...++||..|.+||+|++.| ||++||    |||.++.++++
T Consensus        15 ~~~~~~v~l~~~~~~~~G~~~~g---g~~---~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~   82 (107)
T 3nfk_A           15 HDNLVLIRMKPDENGRFGFNVKG---GYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTH   82 (107)
T ss_dssp             -CCCEEEEECCCTTSCCCEEEEE---EGG---GTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCH
T ss_pred             CCCEEEEEEEcCCCCCCCEEEEc---cCC---CCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCH
Confidence            3457789999988 899999999   443   23589999999999999999 799999    89999998766

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.38  E-value=3.8e-07  Score=81.52  Aligned_cols=61  Identities=30%  Similarity=0.300  Sum_probs=52.1

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ...+|.|.|.. .+|||+|.|   |.+   ...++||.+|.+||+|++.|+|++||    |||.++.+++|.
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~g---g~~---~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~   84 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGG---GAQ---YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKV   84 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEE---CSS---CCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred             CCeEEEEEeCCCCCcCEEEec---cCC---CCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            45678898876 689999999   544   23589999999999999999999999    899999987763

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.38  E-value=1.9e-07  Score=79.62  Aligned_cols=59  Identities=24%  Similarity=0.388  Sum_probs=50.7

Q ss_pred             ceeEEEEEEee-CCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k-~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.+++.|.| ...||||++.+         ...|++|.+|.+||+|++.|+|++||    |||.++.++++
T Consensus         6 ~~~~~~v~l~~~~~~glG~~~~~---------~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~   69 (96)
T 2qkv_A            6 SLEKFNVDLMKKAGKELGLSLSP---------NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPF   69 (96)
T ss_dssp             CCCCEEEEEECBTTBCCCEEEEE---------CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCH
T ss_pred             HCceEEEEEEeCCCCCccEEEEe---------CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            45667899976 45799999988         23589999999999999999999999    89999998765

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=98.37  E-value=1.2e-06  Score=80.67  Aligned_cols=89  Identities=12%  Similarity=0.078  Sum_probs=70.4

Q ss_pred             eEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc----------------------hhchhhhCCCC---
Q psy12938        500 TVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV----------------------GDHFSATFKTS---  551 (612)
Q Consensus       500 ~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~----------------------~d~~~~~~~i~---  551 (612)
                      +||++|| ++||+.|+.+.+.|.+++++|.  ++.|+.|..+..                      ...+...|.+.   
T Consensus        38 ~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~~  117 (160)
T 1xvw_A           38 NVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQ  117 (160)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETT
T ss_pred             CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHHHHHcCCcccc
Confidence            8999998 9999999999999999999994  699999877531                      12467889998   


Q ss_pred             -CCc---EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        552 -GLP---AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       552 -~lP---tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                       ++|   ++++.++|+++..+.|..   +..-..+++.+.|.+.
T Consensus       118 ~~~p~~~~~lid~~G~i~~~~~g~~---~~~~~~~~l~~~l~~l  158 (160)
T 1xvw_A          118 AGIANRGTFVVDRSGIIRFAEMKQP---GEVRDQRLWTDALAAL  158 (160)
T ss_dssp             TTEECSEEEEECTTSBEEEEEECCT---TCCCCHHHHHHHHHHT
T ss_pred             CCCeeeeEEEECCCCeEEEEEecCC---CCCCCHHHHHHHHHHh
Confidence             999   667779999999988752   2334567777777653

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.37  E-value=3.6e-07  Score=77.40  Aligned_cols=64  Identities=39%  Similarity=0.535  Sum_probs=53.1

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCC-CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGL-EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~-~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.++|.|.++..||||++.+   +.+... ...|++|..|.+||+|++.|+|++||    |||..+.++++
T Consensus         3 ~~~~~v~l~~~~~~lG~~i~~---~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~   71 (97)
T 2iwn_A            3 SETFDVELTKNVQGLGITIAG---YIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTN   71 (97)
T ss_dssp             EEEEEEEEECBTTBSCEEEEC---CCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCH
T ss_pred             cEEEEEEEecCCCCCcEEEEc---cCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCH
Confidence            467889999999999999999   433222 34689999999999999999999999    89999988654

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.37  E-value=8.7e-07  Score=82.28  Aligned_cols=89  Identities=15%  Similarity=0.114  Sum_probs=68.6

Q ss_pred             CCceEEEEEeCCCChh-hhhhHHHHHHHHhhcC-----CceEEEecCCCc---h------------------------hc
Q psy12938        497 RHITVIAHLSSPSLPA-CRALNSSLAELSRSHT-----NVKFVSVPLGCV---G------------------------DH  543 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~-C~~m~~~l~~LA~~~~-----~vkF~ki~~~~~---~------------------------d~  543 (612)
                      ++.+|||+||++||++ |+.+.+.|.+++++|.     ++.|+.|+.+..   +                        ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            3458999999999997 9999999999999997     699999987631   0                        02


Q ss_pred             hhhhC---------------CCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        544 FSATF---------------KTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       544 ~~~~~---------------~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +...|               .+..+|+++++.+|+++..+.|..     ..+.++|+..|.+
T Consensus       114 ~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~i~~~~~g~~-----~~~~~~l~~~l~~  170 (172)
T 2k6v_A          114 AAQTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGRLVLLYSPDK-----AEATDRVVADLQA  170 (172)
T ss_dssp             HHHHHTCCEEEEEEEETTEEEEEECCCEEEEETTEEEEEECHHH-----HTCHHHHHHHHHH
T ss_pred             HHHhcCeEEEeccCCCCCCceEecCCEEEEEECCEEEEEECCCC-----CCCHHHHHHHHHH
Confidence            33333               346789999999999999887764     1245778887765

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.36  E-value=2.3e-07  Score=77.89  Aligned_cols=60  Identities=27%  Similarity=0.317  Sum_probs=50.5

Q ss_pred             eEEEEEEeeC-CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~-~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.++|.|.|. ..+|||++.+   +.+   .+.|+||.+|.++|+|++.|.|++||    |||.++.++++
T Consensus         4 ~~~~v~l~k~~~~~lG~~i~~---~~~---~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~   68 (90)
T 1qav_A            4 QRRRVTVRKADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH   68 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEE---EGG---GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCH
T ss_pred             ccEEEEEEeCCCCCcCEEEEc---ccC---CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            3567999995 4899999999   443   24689999999999999996699999    89999998765

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.36  E-value=3.1e-07  Score=80.24  Aligned_cols=58  Identities=40%  Similarity=0.667  Sum_probs=50.8

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +...|.|.|...||||+|.+   +.     +.|+||..|.+||+|++.|+|++||    |||.++.++++
T Consensus        15 ~~~~v~l~~~~~~lG~~l~~---~~-----~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   76 (111)
T 2dlu_A           15 HVEEVELINDGSGLGFGIVG---GK-----TSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTS   76 (111)
T ss_dssp             EEEEEEEECCSSCCCEEEEC---CS-----SSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCH
T ss_pred             ceEEEEEEeCCCccCEEEec---cC-----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            45679999999999999998   32     2489999999999999999999999    89999988655

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.36  E-value=4.1e-07  Score=82.35  Aligned_cols=59  Identities=24%  Similarity=0.368  Sum_probs=49.1

Q ss_pred             EEEEeeCC-CCcceEEEeccCCCC---------CCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        315 GVELMKGA-EGLGLSIIGMGVGAD---------AGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       315 ~v~l~k~~-~glG~si~g~~~g~~---------~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +|.|.|.. .||||+|.|   +.+         +.....|+||..|.+||+|++.| |++||    |||.++.++++
T Consensus        30 ~v~l~r~~~~g~Gf~i~g---~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~  102 (132)
T 3l4f_D           30 TVLLQKKDSEGFGFVLRG---AKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH  102 (132)
T ss_dssp             EEEEECCTTSCCCEEEEE---ECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGT-CCTTCEEEEESSSBCTTSCH
T ss_pred             EEEEEECCCCcEeEEEec---cCCCCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            58998854 899999999   333         12234589999999999999999 99999    89999998776

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=2.3e-07  Score=80.02  Aligned_cols=63  Identities=30%  Similarity=0.462  Sum_probs=53.6

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.++|.|.|+..||||+|.+   +.+.. ++.+++|..|.++++|++.|+|++||    |||..+.++++
T Consensus        10 ~~~~~v~l~~~~~g~G~~l~~---~~~~~-~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   76 (104)
T 2djt_A           10 SGHFSVELVRGYAGFGLTLGG---GRDVA-GDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTH   76 (104)
T ss_dssp             CCCEEEEEECCSSSCCEEEEC---CEETT-EECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCH
T ss_pred             CceEEEEEEeCCCCccEEEEe---ccCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            356779999999999999999   44431 35689999999999999999999999    89999988654

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=3.2e-07  Score=77.30  Aligned_cols=58  Identities=33%  Similarity=0.542  Sum_probs=50.4

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+|+|.|+..||||+|.+   +.+   .+.|++|..|.++++|++.|.|++||    |||.++.++++
T Consensus         7 r~v~l~k~~~glG~~l~~---~~~---~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~   68 (93)
T 2dkr_A            7 GVVELPKTDEGLGFNIMG---GKE---QNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQH   68 (93)
T ss_dssp             CEEEEECCTTCCCEEEEC---SSS---SSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCH
T ss_pred             EEEEEEeCCCCccEEEec---ccC---CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            459999999999999998   544   24589999999999999998899999    89999988654

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.35  E-value=2.2e-07  Score=77.38  Aligned_cols=59  Identities=29%  Similarity=0.443  Sum_probs=49.4

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +++|.|.|.. .+|||++.|   +.+   ...|+||.+|.|||+|++++.|++||    |||.++.++++
T Consensus         3 ~~~v~l~~~~~~~lG~~i~~---~~~---~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~   66 (87)
T 4e34_A            3 IRKVLLLKEDHEGLGISITG---GKE---HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKH   66 (87)
T ss_dssp             CEEEEEECCTTBCCCEEEEE---EGG---GTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCH
T ss_pred             EEEEEEEECCCCcccEEEEc---cCC---CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            4669999976 699999999   443   23579999999999999965599999    89999988765

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.35  E-value=2.4e-07  Score=76.83  Aligned_cols=53  Identities=21%  Similarity=0.342  Sum_probs=46.7

Q ss_pred             eEEEEEEeeCCC-CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAE-GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~-glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +..+|.|.|++. +|||++.+   |          +|.+|.+||+|++.| |++||    |||.++.|++|.
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~~---g----------~I~~v~~gspA~~aG-l~~GD~Il~VNG~~v~~~~~~   61 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFKN---G----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDS   61 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEET---T----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHH
T ss_pred             ceEEEEEEECCCCCeEEEEEC---C----------EEEEecCCCHHHHcC-CCCCCEEEEECCEEcCCCCHH
Confidence            346799999984 69999988   2          489999999999999 99999    999999999884

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.35  E-value=3.5e-07  Score=80.79  Aligned_cols=64  Identities=22%  Similarity=0.332  Sum_probs=53.1

Q ss_pred             ceeEEEEEEeeCC-CCcceEEEeccCCCCCCC---CccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        310 KLTLLGVELMKGA-EGLGLSIIGMGVGADAGL---EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~-~glG~si~g~~~g~~~~~---~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+.++|.|.|+. .||||+|.|   +.++..   ++.|+||.+|.++|+|+  +.|++||    |||.++.+++|.
T Consensus        12 ~~~~~~v~l~k~~~~glG~~i~g---g~~~~~~~~~~~gv~V~~V~~~spA~--~gL~~GD~I~~Vng~~v~~~~~~   83 (117)
T 2csj_A           12 IWEQYTVTLQKDSKRGFGIAVSG---GRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHS   83 (117)
T ss_dssp             EEEEEEEEEECCSSSTTCEEEEC---CSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHH
T ss_pred             cceEEEEEEEECCCCccCEEEeC---CcCCccccCCCCCEEEEEECCCCccc--ccCCCCCEEEEECCEECCCcCHH
Confidence            3467789999997 899999999   555433   46799999999999995  6699999    899999987663

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.34  E-value=2.7e-07  Score=79.71  Aligned_cols=60  Identities=28%  Similarity=0.429  Sum_probs=50.2

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.+|.|.|.. .||||+|.|   +.+.   ..|+||.+|.+||+|++.|.|++||    |||.++.++++
T Consensus         9 ~~~~v~l~~~~~~~lG~~l~~---g~~~---~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~   73 (103)
T 2dc2_A            9 PIRKVLLLKEDHEGLGISITG---GKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKH   73 (103)
T ss_dssp             CEEEEEEECCSSSCCCEEEEE---EGGG---TEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCH
T ss_pred             CcEEEEEEeCCCCccCEEEEe---ccCC---CCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCH
Confidence            45668888766 799999999   4432   3589999999999999985599999    89999998766

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.33  E-value=1.9e-07  Score=83.92  Aligned_cols=58  Identities=26%  Similarity=0.391  Sum_probs=51.5

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+.+.|.|+..||||+|.+         .+.+++|.+|.+||||+++|+|++||    |||.++.|.++.
T Consensus        27 ~~~~~~l~k~~~glG~~i~~---------~~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~   88 (126)
T 1wif_A           27 KVIQTKLTVGNLGLGLVVIQ---------NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLR   88 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEE---------ETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHH
T ss_pred             ceEEEEEecCCceEeEEEEc---------CCCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHH
Confidence            46679999999999999998         34579999999999999999999999    899999876653

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.32  E-value=1.1e-07  Score=101.72  Aligned_cols=100  Identities=22%  Similarity=0.324  Sum_probs=51.3

Q ss_pred             ceeEEEEEEeeC-CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc-----
Q psy12938        310 KLTLLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA-----  379 (612)
Q Consensus       310 ~~~~~~v~l~k~-~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~-----  379 (612)
                      ...+..|.+.|. .++|||+|.+.+.|    ....|+||.+|.|||+|++.|+|++||    |||.++.+++|..     
T Consensus       202 ~~~~~~V~i~k~~ge~lG~~i~~~~~g----~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l  277 (388)
T 3suz_A          202 SENCKELQLEKHKGEILGVVVVESGWG----SILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGII  277 (388)
T ss_dssp             SSCCEEEEECCCSSCCCCCCCBCC-------CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHT
T ss_pred             cccceEEEEECCCCCceeEEEEecCCC----CcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHH
Confidence            345667899887 47999999983222    134579999999999999999999999    8999998864422     


Q ss_pred             --------------------------CCCCcccc-----eEEEEeeccccccccCcceeccCCccc
Q psy12938        380 --------------------------DAGLEKLG-----IFVKTITEAGAAARDGRIQVRRGPKGV  414 (612)
Q Consensus       380 --------------------------~~~~~~~~-----i~i~~i~~~~~a~~dg~l~~~~~~~gv  414 (612)
                                                .......|     .||..|.+||+|++.| |+.||--..|
T Consensus       278 ~~~~~~~~v~l~v~r~~~~~~v~l~~~~~~~~lG~~i~~g~I~~V~~gs~A~~aG-L~~GD~Il~V  342 (388)
T 3suz_A          278 KGLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNGIICSLMRGGIAERGG-VRVGHRIIEI  342 (388)
T ss_dssp             TTCTTCSCEEEEEEECCSCC----------------------------------------------
T ss_pred             HhccCCCccccccccccccceeeEeecCCCCccceEEecCEEEEeecCCHHHHcC-CCCCCEEEEE
Confidence                                      00011122     3788999999999999 9999854333

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.32  E-value=1.1e-06  Score=86.08  Aligned_cols=88  Identities=14%  Similarity=0.204  Sum_probs=68.0

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCC-----------------------------CchhchhhhC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLG-----------------------------CVGDHFSATF  548 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~-----------------------------~~~d~~~~~~  548 (612)
                      .|||.||++||+.|+.+.+.|.+|+++|..  +.|+.|+.+                             ... .+...|
T Consensus        61 ~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~-~~~~~~  139 (218)
T 3u5r_E           61 ALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQ-SVAKAY  139 (218)
T ss_dssp             EEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTC-HHHHHH
T ss_pred             eEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCcc-HHHHHc
Confidence            499999999999999999999999999964  999999874                             122 567889


Q ss_pred             CCCCCcEEEEE-ECCEEeeEEEecccc----ccCCCCHHHHHHHHHH
Q psy12938        549 KTSGLPAMLAY-RGGEVVGNFVRLGEE----LGEGYFVEDVEAFLVE  590 (612)
Q Consensus       549 ~i~~lPtllvy-k~G~~~~~~vg~~~~----~g~~~~~~~lE~~L~~  590 (612)
                      .+..+|+++++ ++|+++.+  |..+.    .....+.++|+..|.+
T Consensus       140 ~v~~~P~~~liD~~G~i~~~--g~~d~~~~~~~~~~~~~~l~~~i~~  184 (218)
T 3u5r_E          140 GAACTPDFFLYDRERRLVYH--GQFDDARPGNGKDVTGADLRAAVDA  184 (218)
T ss_dssp             TCCEESEEEEECTTCBEEEE--ECSSSCCTTSCCCCCCHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCcEEEe--ccccccccccccccCHHHHHHHHHH
Confidence            99999999999 89998743  32221    1123455777777755

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.32  E-value=1.2e-06  Score=80.59  Aligned_cols=85  Identities=11%  Similarity=0.134  Sum_probs=65.5

Q ss_pred             CceEEEEEeCCCChh-hhhhHHHHHHHHhhc------CCceEEEecCCCch---------------------------hc
Q psy12938        498 HITVIAHLSSPSLPA-CRALNSSLAELSRSH------TNVKFVSVPLGCVG---------------------------DH  543 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~-C~~m~~~l~~LA~~~------~~vkF~ki~~~~~~---------------------------d~  543 (612)
                      +.+|+|.||++||++ |+...+.|.++.++|      +++.|+.|..+...                           ..
T Consensus        23 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~  102 (164)
T 2ggt_A           23 GQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQ  102 (164)
T ss_dssp             TCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHHH
T ss_pred             CCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHHH
Confidence            458999999999998 999999999999887      37888888765311                           02


Q ss_pred             hhhhCCCCCCc----------------EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        544 FSATFKTSGLP----------------AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       544 ~~~~~~i~~lP----------------tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      +...|.+...|                ++++.++|+++..+.|..       +.++|+..|.
T Consensus       103 ~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~-------~~~~l~~~l~  157 (164)
T 2ggt_A          103 VARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK-------RKGEIAASIA  157 (164)
T ss_dssp             HHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTC-------CHHHHHHHHH
T ss_pred             HHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCC-------CHHHHHHHHH
Confidence            56789999999                666679999999886642       3355655554

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=98.31  E-value=4.4e-07  Score=75.70  Aligned_cols=58  Identities=22%  Similarity=0.395  Sum_probs=49.4

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..++|.| +++.+|||++.|   |.+   ...+++|..|.+|++|++.| |++||    |||.++.++++
T Consensus         3 ~~~~v~l-~~~~~~G~~l~~---g~~---~~~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   64 (88)
T 2uzc_A            3 SNYSVSL-VGPAPWGFRLQG---GKD---FNMPLTISSLKDGGKAAQAN-VRIGDVVLSIDGINAQGMTH   64 (88)
T ss_dssp             CEEEEEE-ESSSCCCEEEEE---EGG---GTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             cEEEEEE-cCCCcccEEEEC---cCC---CCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4567888 777899999999   444   24589999999999999999 99999    89999988754

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.31  E-value=6.2e-07  Score=76.77  Aligned_cols=57  Identities=19%  Similarity=0.241  Sum_probs=49.0

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++.|.|.|.. .+|||++..   +.     +.|++|.+|.+||+|++.|+|++||    |||.++.++++
T Consensus        13 ~~~v~l~K~~~~~lG~~l~~---~~-----~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~   74 (97)
T 2ejy_A           13 VRLIQFEKVTEEPMGICLKL---NE-----KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV   74 (97)
T ss_dssp             CEEEEEEECSSSCCSEEEEE---CT-----TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCS
T ss_pred             cEEEEEEeCCCCCeeEEEEe---CC-----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            4569999876 789999987   22     2489999999999999999999999    89999998665

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.30  E-value=1.5e-07  Score=82.64  Aligned_cols=87  Identities=20%  Similarity=0.285  Sum_probs=61.7

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch------hchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG------DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~------d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      .|+.|+++||+.|+.+.+.|+.++..++.  |..++.+..+      +.+...+++..+|++  |.||+.++.+..+.+.
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~--~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~igg~~~~~~~   95 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKFSFKRGA--YEIVDIKEFKPENELRDYFEQITGGKTVPRI--FFGKTSIGGYSDLLEI   95 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTSCBCTTS--EEEEEGGGSSSHHHHHHHHHHHHSCCSSCEE--EETTEEEESHHHHHHH
T ss_pred             CEEEEEeCCChhHHHHHHHHHHcCCCcCc--eEEEEccCCCChHHHHHHHHHHhCCCCcCEE--EECCEEEeCcHHHHHH
Confidence            46669999999999999999987655543  6666655332      256778999999987  4499887754333221


Q ss_pred             ccCCCCHHHHHHHHHHCCccc
Q psy12938        575 LGEGYFVEDVEAFLVEAGLLR  595 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~g~l~  595 (612)
                      .    ....|+.+|...|+|.
T Consensus        96 ~----~~~~L~~~L~~~g~~~  112 (114)
T 2hze_A           96 D----NMDALGDILSSIGVLR  112 (114)
T ss_dssp             H----HTTCHHHHHHHTTCBC
T ss_pred             H----HCChHHHHHHHcCCee
Confidence            1    1145999999999864

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=98.29  E-value=5.9e-07  Score=75.29  Aligned_cols=57  Identities=21%  Similarity=0.437  Sum_probs=49.9

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.|+..||||++.+   +.+    ..|++|..|.+|++|++.| |++||    |||.++.+++|
T Consensus         5 ~r~v~l~k~~~g~G~~~~~---~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   65 (90)
T 2he4_A            5 PRLCHLRKGPQGYGFNLHS---DKS----RPGQYIRSVDPGSPAARSG-LRAQDRLIEVNGQNVEGLRH   65 (90)
T ss_dssp             CEEEEEECBTTBCCEEEEE---CSS----SSSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTSCH
T ss_pred             cEEEEEEECCCCccEEEEc---cCC----CCCEEEEEECCCChHHHCC-CCCCCEEEEECCEECCCCCH
Confidence            4569999999999999999   332    3489999999999999999 99999    89999988755

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.29  E-value=4.3e-07  Score=78.25  Aligned_cols=63  Identities=29%  Similarity=0.398  Sum_probs=50.0

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.++|.|.|+. ||||+|.|+..+.+.+.  .+.|+||.+|.++|+|++ | |++||    |||.++.++++
T Consensus        11 ~~~~v~l~~~~-~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-g-L~~GD~I~~vng~~v~~~~~   79 (103)
T 1n7t_A           11 QEIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEH   79 (103)
T ss_dssp             CCEEEEEECSS-CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-S-CCTTCEEEEETTEECSSCCH
T ss_pred             EEEEEEEccCC-CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-C-CCCCCEEEEECCEECCCCCH
Confidence            45669999987 89999999322112222  456999999999999999 6 99999    89999988765

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.29  E-value=3.9e-07  Score=80.07  Aligned_cols=58  Identities=26%  Similarity=0.374  Sum_probs=50.9

Q ss_pred             eeEEEEEEeeCCC-CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAE-GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~-glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.+|.|.|... ||||++.+         .+.|+||..|.+||+|++.|.|++||    |||..+.++++
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~~---------~~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~   86 (113)
T 1va8_A           24 ETVKIVRIEKARDIPLGATVRN---------EMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDV   86 (113)
T ss_dssp             EECEEEEEEECTTCCCCEEEEE---------CSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCH
T ss_pred             CceEEEEEEeCCCCceeEEEEe---------CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3667799999996 99999998         24589999999999999999669999    89999998765

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.28  E-value=4.3e-07  Score=80.33  Aligned_cols=62  Identities=24%  Similarity=0.244  Sum_probs=51.9

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+.|.|.|.. .+|||+|.+   +.+.  ...++||.+|.+||+|++.|+|++||    |||.++.++++.
T Consensus        15 ~~~~v~l~k~~~~~lG~~i~~---~~~~--~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~   81 (117)
T 1v62_A           15 GPLMVEIVKTPGSALGISLTT---TSLR--NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLL   81 (117)
T ss_dssp             SSEEEEEECCTTCCCCCEEEE---ECCS--SSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHH
T ss_pred             CcEEEEEEcCCCCcccEEEEc---cCCC--CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            45669999987 799999999   4332  22359999999999999999999999    899999887663

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.28  E-value=4.4e-07  Score=80.35  Aligned_cols=60  Identities=18%  Similarity=0.290  Sum_probs=50.7

Q ss_pred             eEEEEEEeeCCC-CcceEEEeccCCCCCCCCccceEEEEeccCchhccc-CCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAE-GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARD-GRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~-glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~d-grl~~gD----vng~~~~g~~~  377 (612)
                      ..++|.|.|+.. +|||+|.|   +.+   .+.|+||.+|.+||+|++. |.|++||    |||.++.+++|
T Consensus        15 ~~~~v~l~k~~~~~~G~~l~g---g~~---~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~   80 (119)
T 2cs5_A           15 NLVLIRMKPDENGRFGFNVKG---GYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTH   80 (119)
T ss_dssp             CCEEEEECCCSSSCCSEEEEE---EGG---GTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCH
T ss_pred             CeEEEEEEeCCCCCcCEEEec---ccC---CCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCH
Confidence            456799999884 59999999   444   2458999999999999999 5599999    89999998766

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.27  E-value=1.2e-06  Score=75.79  Aligned_cols=62  Identities=23%  Similarity=0.340  Sum_probs=51.4

Q ss_pred             eeEEEEEEeeCC-CCcceEEEeccCCCCCCC---CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGA-EGLGLSIIGMGVGADAGL---EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~-~glG~si~g~~~g~~~~~---~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.++|.|.|+. .||||+|.|   +.+.+.   ++.|++|.+|.+|++|+ .| |++||    |||.++.++++
T Consensus         6 ~~~~~v~l~k~~~~glG~~i~~---~~~~~~~~~~~~gv~V~~V~~~spA~-ag-l~~GD~I~~vng~~v~~~~~   75 (107)
T 2h2b_A            6 WEQHTVTLHRAPGFGFGIAISG---GRDNPHFQSGETSIVISDVLKGGPAE-GQ-LQENDRVAMVNGVSMDNVEH   75 (107)
T ss_dssp             EEEEEEEEECBTTTBTCEEEEE---CTTSCCTTTCCCCEEEEEECTTSTTB-TT-BCTTCEEEEETTEECTTCCH
T ss_pred             ceeEEEEEEeCCCCccCEEEec---CcCCCcccCCCCCEEEEEECCCCchh-hC-CCCCCEEEEECCEECCCccH
Confidence            467889999996 899999999   544322   45699999999999998 55 99999    89999988654

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=98.27  E-value=1e-06  Score=78.43  Aligned_cols=64  Identities=34%  Similarity=0.496  Sum_probs=53.9

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.+.|.|.++..||||+|.+   +.+...+..|++|..|.+||+|++.|+|++||    |||.++.++++
T Consensus        29 ~~~~~v~l~~~~~~lG~~l~~---~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~   96 (121)
T 2kom_A           29 GKRLNIQLKKGTEGLGFSITS---RDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQ   96 (121)
T ss_dssp             CEEEEEEEECCTTCCCEEEEC---CCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCH
T ss_pred             CeEEEEEEEcCCCcEeEEEEe---ccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCH
Confidence            456779999999999999999   44433345689999999999999999999999    89999988544

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.26  E-value=1.3e-06  Score=72.33  Aligned_cols=41  Identities=22%  Similarity=0.432  Sum_probs=38.8

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEee
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR   94 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R   94 (612)
                      +|++||+|++|||+++.+++|++++++|+.++..|+|+|..
T Consensus        40 Gl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v~p   80 (82)
T 1r6j_A           40 GLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP   80 (82)
T ss_dssp             TCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             CCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEe
Confidence            49999999999999999999999999999999999999863

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.26  E-value=1.1e-06  Score=73.78  Aligned_cols=60  Identities=25%  Similarity=0.380  Sum_probs=50.9

Q ss_pred             ceeEEEEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..++++|.|.|..  .+|||+|.+   +.+    ..|++|..|.+||+|++.| |++||    |||..+.++.+
T Consensus         4 ~~~~~~v~l~k~~~~~~~G~~~~~---~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   69 (91)
T 1m5z_A            4 PVELHKVTLYKDSGMEDFGFSVAD---GLL----EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDC   69 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEE---CTT----SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CcceEEEEEEECCCCCCccEEEEe---ccC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3577889999975  489999999   432    3589999999999999999 99999    89999988654

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.26  E-value=3.8e-06  Score=78.68  Aligned_cols=93  Identities=18%  Similarity=0.403  Sum_probs=71.8

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcC-CCeEEEEEeecCCCC---------ch--------hhHHhhh------cccC
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREKDPV---------NS--------EVAQLIR------QSLQ   56 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~-~~~v~l~v~r~~~~~---------~~--------~i~~i~~------G~L~   56 (612)
                      +||+|++|||..+.+.++..+..+++.. +..+.|+|+|.....         ..        .+..+..      .+|+
T Consensus        47 ~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~~~~~v~l~~~~~~~lG~~~~~g~v~~v~~~s~a~~aGl~  126 (166)
T 1w9e_A           47 FGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLL  126 (166)
T ss_dssp             TTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCTTCEEEEEECCTTSCCSEEEETTEEEEECTTSHHHHTTCC
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCCCcEEEEEecCCCCcEeEEEeCCEEEEEccCCHHHHcCCC
Confidence            5999999999999999998888888765 458999996551110         00        0111111      2599


Q ss_pred             CCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         57 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        57 ~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      .||+|++|||..+.+..+.++...++..+..+.+.+.
T Consensus       127 ~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~  163 (166)
T 1w9e_A          127 TEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM  163 (166)
T ss_dssp             SSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             CCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEE
Confidence            9999999999999999999998888888888888775

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.26  E-value=6.5e-07  Score=79.17  Aligned_cols=59  Identities=27%  Similarity=0.522  Sum_probs=51.5

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.++|.|.|+..||||+|.+   +.+    ..|++|..|.+||+|++.|+|++||    |||.++.++++
T Consensus        14 ~~~~v~l~k~~~glG~~l~~---~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   76 (119)
T 1tp5_A           14 EPRRIVIHRGSTGLGFNIVG---GED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASH   76 (119)
T ss_dssp             SCEEEEEECTTSCCCEEEEE---CGG----GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCH
T ss_pred             ccEEEEEEECCCCccEEEec---CCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            45679999999999999999   332    3589999999999999999999999    89999988654

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.26  E-value=1.2e-06  Score=76.36  Aligned_cols=63  Identities=30%  Similarity=0.559  Sum_probs=53.3

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCC---CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGL---EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~---~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.+++.|.+...||||+|.|   |.++..   ...|++|..|.++++|++.| |++||    |||..+.++++
T Consensus        14 ~~~~~~~l~~~~~glG~~i~~---g~~~~~~~~~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   83 (110)
T 1x5q_A           14 EEELTLTILRQTGGLGISIAG---GKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEH   83 (110)
T ss_dssp             CEEEEEEEECSSSSCSEEEEE---CTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             cceEEEEEecCCCeeeEEEEc---cccCCccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCH
Confidence            356779999999999999999   554321   45699999999999999999 99999    89999988655

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=98.25  E-value=1.7e-06  Score=82.24  Aligned_cols=76  Identities=11%  Similarity=0.018  Sum_probs=64.1

Q ss_pred             CCceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc------------------------hhchhhhCC
Q psy12938        497 RHITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV------------------------GDHFSATFK  549 (612)
Q Consensus       497 ~~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~------------------------~d~~~~~~~  549 (612)
                      ++.+||++|| ++||+.|+.+.+.|.+++++|.  ++.|+.|..+..                        ...+...|.
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHHHhC
Confidence            3458999999 9999999999999999999985  699999877631                        114567888


Q ss_pred             CC------CCcEEEEE-ECCEEeeEEEecc
Q psy12938        550 TS------GLPAMLAY-RGGEVVGNFVRLG  572 (612)
Q Consensus       550 i~------~lPtllvy-k~G~~~~~~vg~~  572 (612)
                      +.      .+|+++++ ++|+++..+.|..
T Consensus       110 v~~~~~g~~~P~~~lid~~G~i~~~~~g~~  139 (187)
T 1we0_A          110 VLNEETGLADRGTFIIDPDGVIQAIEINAD  139 (187)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECT
T ss_pred             CCcCCCCceeeEEEEECCCCeEEEEEecCC
Confidence            88      89999999 8999999998863

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=98.24  E-value=9.1e-07  Score=73.98  Aligned_cols=59  Identities=20%  Similarity=0.266  Sum_probs=49.1

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++.++|.|.+ ..+|||+|.|   |.+   ...|++|..|.+|++|++.| |++||    |||.++.++++
T Consensus         2 ~~~~~v~~~~-~~~~G~~l~g---g~~---~~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   64 (89)
T 2q3g_A            2 MDSFKVVLEG-PAPWGFRLQG---GKD---FNVPLSISRLTPGGKAAQAG-VAVGDWVLSIDGENAGSLTH   64 (89)
T ss_dssp             EEEEEEEEES-SSCCCEEEEE---EGG---GTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCH
T ss_pred             ccEEEEEEcC-CCcccEEEEC---cCC---CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4567788864 5799999999   443   24589999999999999999 99999    89999998655

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.23  E-value=2.8e-07  Score=82.88  Aligned_cols=64  Identities=25%  Similarity=0.349  Sum_probs=51.7

Q ss_pred             eEEEEEEeeCC--CCcceEEEeccCCCCCC------CCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGA--EGLGLSIIGMGVGADAG------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~--~glG~si~g~~~g~~~~------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+..|.|.|..  .||||+|.+   +.+..      ....|+||..|.+||+|++.|+|++||    |||.++.++++.
T Consensus        29 ~~r~v~l~k~~~~~~lG~~i~~---~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~  104 (128)
T 1nf3_C           29 THRRVRLCKYGTEKPLGFYIRD---GSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLD  104 (128)
T ss_dssp             TCEEEEECCSSTTSCCCEEEEE---EEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHH
T ss_pred             ccEEEEEEECCCCCCccEEEEc---cccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHH
Confidence            44569999984  789999998   33211      023589999999999999999999999    899999887663

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.23  E-value=2.1e-06  Score=82.33  Aligned_cols=92  Identities=11%  Similarity=0.055  Sum_probs=72.3

Q ss_pred             CCceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc------------------------hhchhhhCC
Q psy12938        497 RHITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV------------------------GDHFSATFK  549 (612)
Q Consensus       497 ~~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~------------------------~d~~~~~~~  549 (612)
                      ++.+|||+|| ++||++|+...+.|.+++++|.  +++|+.|..+..                        ...+...|.
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  123 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  123 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHHHhC
Confidence            3458999999 9999999999999999999986  699999887631                        113556788


Q ss_pred             CC-----CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        550 TS-----GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       550 i~-----~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +.     .+|+++++ ++|+++..++|....   .-..++|...|.+.
T Consensus       124 v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~---~~~~~~l~~~l~~l  168 (195)
T 2bmx_A          124 VLNADGVADRVTFIVDPNNEIQFVSATAGSV---GRNVDEVLRVLDAL  168 (195)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTC---CCCHHHHHHHHHHH
T ss_pred             CcccCCCccceEEEEcCCCeEEEEEecCCCC---CCCHHHHHHHHHHH
Confidence            88     99999999 799999999886322   23567777777643

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.23  E-value=1.1e-06  Score=77.19  Aligned_cols=56  Identities=21%  Similarity=0.265  Sum_probs=47.3

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .++++|.|.|+..||||+|.+   +      ..|.||++|+++   +++++|++||    |||.++.+++|.
T Consensus        11 ~~~~~V~L~Kg~~G~GFsI~~---~------~~g~~V~~I~~~---~~~aGL~~GD~Il~VNG~~v~~~~h~   70 (113)
T 3soe_A           11 GLLVTIPLIKGPKGFGFAIAD---S------PTGQKVKMILDS---QWCQGLQKGDIIKEIYHQNVQNLTHL   70 (113)
T ss_dssp             CEEEEEEEECBTTBSSEEEEE---E------TTEEEEEEESCG---GGSTTCCTTCEEEEETTEECTTSCHH
T ss_pred             CCEEEEEEEECCCcccEEEeC---C------CCCcEEEEecCh---HHhCCCCCCCEEEEECCEECCCCCHH
Confidence            467889999999999999987   2      337889999983   4567799999    999999999874

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.21  E-value=4.3e-06  Score=87.75  Aligned_cols=87  Identities=15%  Similarity=0.091  Sum_probs=72.0

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCC--CchhchhhhCCCCC--CcEEEEEECCEEeeEEEecccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLG--CVGDHFSATFKTSG--LPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~--~~~d~~~~~~~i~~--lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      .+++.||++||+.|+.+.+.|.++|++|. .+.|+.+|.+  ..+ .+.+.|.+..  +|++++|+.|.....+.-    
T Consensus       137 ~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~-~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~----  211 (361)
T 3uem_A          137 THILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQ-RILEFFGLKKEECPAVRLITLEEEMTKYKP----  211 (361)
T ss_dssp             EEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGH-HHHHHTTCCTTTCSEEEEEECC--CCEECC----
T ss_pred             cEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHH-HHHHHcCCCccCCccEEEEEcCCcccccCC----
Confidence            67899999999999999999999999996 5999999998  454 6779999987  999999999766554432    


Q ss_pred             ccCCCCHHHHHHHHHHC
Q psy12938        575 LGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~  591 (612)
                      -+..++.+.|+.|+..+
T Consensus       212 ~~~~~~~~~l~~fi~~~  228 (361)
T 3uem_A          212 ESEELTAERITEFCHRF  228 (361)
T ss_dssp             SSCCCCHHHHHHHHHHH
T ss_pred             CccccCHHHHHHHHHHH
Confidence            13468889999999874

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.21  E-value=1.7e-06  Score=80.42  Aligned_cols=99  Identities=18%  Similarity=0.271  Sum_probs=69.5

Q ss_pred             CceEEEEEeCCCChhhhhhHHHH---HHHHhhc-CCceEEEecCCCc-hhchhhhCCCCCCcEEEEEEC--CEEeeEEEe
Q psy12938        498 HITVIAHLSSPSLPACRALNSSL---AELSRSH-TNVKFVSVPLGCV-GDHFSATFKTSGLPAMLAYRG--GEVVGNFVR  570 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~-~~vkF~ki~~~~~-~d~~~~~~~i~~lPtllvyk~--G~~~~~~vg  570 (612)
                      +.+|+|+||++||..|+.|+...   .++++.. .+.-+++++.+.. ...+.+.|.+.++|+++++..  |+.+..+.|
T Consensus        42 ~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~~~g  121 (153)
T 2dlx_A           42 NKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ  121 (153)
T ss_dssp             TCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS
T ss_pred             CCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeeecCC
Confidence            45999999999999999997653   3343332 2567778887642 224678999999999999953  777776522


Q ss_pred             ccccccCCCCHHHHHHHHHHCCcccCCCCC
Q psy12938        571 LGEELGEGYFVEDVEAFLVEAGLLRAGGLP  600 (612)
Q Consensus       571 ~~~~~g~~~~~~~lE~~L~~~g~l~~~~~~  600 (612)
                          ...+-+.+.|..+|.+++.+.....+
T Consensus       122 ----~~~~~fl~~L~~~l~~~~~~~~~~~~  147 (153)
T 2dlx_A          122 ----LDVSSFLDQVTGFLGEHGQLDGLSSS  147 (153)
T ss_dssp             ----CCHHHHHHHHHHHHHHTCSCSSCCCC
T ss_pred             ----CCHHHHHHHHHHHHHhcCCCCCCCCC
Confidence                12234556777888888887755543

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=98.21  E-value=1.1e-06  Score=73.95  Aligned_cols=56  Identities=18%  Similarity=0.316  Sum_probs=49.1

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +...+|.|.|+..||||.+.+   .       .|++|..|.+||+|++.| |+.||    |||.++.++++
T Consensus         2 ~~~r~v~l~~~~~g~G~~l~~---~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   61 (91)
T 2f5y_A            2 MRYRQITIPRGKDGFGFTICC---D-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKC   61 (91)
T ss_dssp             CEEEEEEEECBTTBTSEEEEC---S-------SSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CceEEEEEEeCCCCccEEEec---C-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            356679999999999999987   2       369999999999999999 99999    89999988654

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.21  E-value=1.1e-06  Score=77.89  Aligned_cols=60  Identities=23%  Similarity=0.341  Sum_probs=48.2

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +..+.+.+. .||||+|.|   |.+...  ..+||.+|.+||+|++.|.|++||    |||.++.+++|.
T Consensus        19 ~~~~~~~~~-~glG~~i~g---g~~~~~--~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~   82 (118)
T 1v6b_A           19 VRLLRIKKE-GSLDLALEG---GVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLA   82 (118)
T ss_dssp             EEEEEEESC-SCCCCEEEE---BTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHH
T ss_pred             EEEEEECCC-CccCEEEEc---ccCCCC--CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            344556665 499999999   555432  359999999999999997799999    999999998763

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.20  E-value=2.4e-07  Score=79.68  Aligned_cols=61  Identities=34%  Similarity=0.580  Sum_probs=52.2

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.+++.|.++..||||+|.+   +.+   ...|++|..|.+|++|++.|+|++||    |||.++.++++
T Consensus        10 ~~~~~v~l~~~~~g~G~~~~~---~~~---~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~   74 (103)
T 1wfv_A           10 FDYFTVDMEKGAKGFGFSIRG---GRE---YKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTH   74 (103)
T ss_dssp             SCCEECCEECCTTSSSBCCEE---ETT---TTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCH
T ss_pred             ceEEEEEEecCCCcCCEEEec---ccc---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            345678899998999999998   444   23589999999999999999999999    89999998655

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.20  E-value=1.1e-06  Score=73.61  Aligned_cols=52  Identities=37%  Similarity=0.522  Sum_probs=44.9

Q ss_pred             EEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        315 GVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       315 ~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .|.|.+..  .+|||++.+            |+||.+|.+||+|++.|+|++||    |||.++.++++.
T Consensus         3 ~v~l~~~~~~~~~G~~~~~------------gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~   60 (88)
T 3e17_A            3 GVLLMKSRANEEYGLRLGS------------QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLT   60 (88)
T ss_dssp             EEEEECBTTBCCCCEEEEE------------EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred             EEEEEeCCCCCCCCEEEeC------------CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            46666644  679999977            69999999999999999999999    899999887763

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.19  E-value=1.3e-06  Score=81.60  Aligned_cols=74  Identities=15%  Similarity=0.165  Sum_probs=55.5

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC-----------Cchhch-------------------
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG-----------CVGDHF-------------------  544 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~-----------~~~d~~-------------------  544 (612)
                      ++.+|||.||++||++|+ ..+.|.+++++|.  ++.|+.|+.+           ....++                   
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            345899999999999999 9999999999986  4899988642           111011                   


Q ss_pred             ----------hhhCCCCCCc-------EEEEEECCEEeeEEEec
Q psy12938        545 ----------SATFKTSGLP-------AMLAYRGGEVVGNFVRL  571 (612)
Q Consensus       545 ----------~~~~~i~~lP-------tllvyk~G~~~~~~vg~  571 (612)
                                ...|.+.++|       ++|+.++|+++..+.|.
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~  153 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSL  153 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTT
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCC
Confidence                      0246788899       56666999999988774

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=98.19  E-value=7.9e-07  Score=73.57  Aligned_cols=56  Identities=23%  Similarity=0.333  Sum_probs=46.8

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++|+| +++.+|||+|.|   +.+.   ..|++|.+|.+||+|++.| |++||    |||.++.++++
T Consensus         3 ~~v~l-~~~~~~G~~l~g---g~~~---~~~v~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   62 (85)
T 1rgw_A            3 YSVTL-TGPGPWGFRLQG---GKDF---NMPLTISRITPGSKAAQSQ-LSQGDLVVAIDGVNTDTMTH   62 (85)
T ss_dssp             EEEEE-CCSSCCCEEECC---CGGG---TSCCBEEEECTTSHHHHSS-CCCCSBEEEETTEECTTCCH
T ss_pred             EEEEE-eCCCccCEEEEe---ccCC---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCH
Confidence            56888 466799999998   4442   3589999999999999988 99999    89999988654

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.18  E-value=4.6e-07  Score=91.44  Aligned_cols=60  Identities=25%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +..+|.|.|.. .||||+|.|   |.+   .+.||||.+|.+||+|++++.|++||    |||.++.+++|
T Consensus        77 ~~r~V~L~k~~~~glGf~I~g---g~d---~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~  141 (263)
T 1z87_A           77 QRRRVTVRKADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATH  141 (263)
T ss_dssp             SSEEECCCTTTTCCCCCEEEE---ETT---TTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCH
T ss_pred             ccEEEEEEeCCCCCEeEEEee---ccC---CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCH
Confidence            34669999985 899999999   554   24689999999999999987799999    99999999877

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=98.18  E-value=1.3e-06  Score=74.18  Aligned_cols=60  Identities=23%  Similarity=0.347  Sum_probs=50.4

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.|+..||||++.+   ..+. ....|++|..|.++++|++.| |++||    |||..+.++++
T Consensus         4 ~r~v~l~k~~~~~G~~l~~---~~~~-~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   67 (96)
T 2v90_A            4 PRCLHLEKGPQGFGFLLRE---EKGL-DGRPGQFLWEVDPGLPAKKAG-MQAGDRLVAVAGESVEGLGH   67 (96)
T ss_dssp             CEEEEEECBTTBSCEEEEE---EECT-TSCEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCH
T ss_pred             CEEEEEEeCCCcccEEEEe---ccCC-CCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3569999999999999998   2221 135689999999999999999 99999    89999988654

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.18  E-value=1.9e-06  Score=82.14  Aligned_cols=85  Identities=14%  Similarity=0.112  Sum_probs=62.0

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCC-------chhc---hh-h------------------
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGC-------VGDH---FS-A------------------  546 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~-------~~d~---~~-~------------------  546 (612)
                      +.+|||.||++||+.|+...+.|.+++++|.+  ++|+.|+.+.       .++.   .. +                  
T Consensus        48 Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~~  127 (190)
T 2vup_A           48 GSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGEN  127 (190)
T ss_dssp             TSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSSTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCccc
Confidence            45899999999999999999999999999863  9999997652       0000   11 1                  


Q ss_pred             -----------hCCCCCCc-------EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        547 -----------TFKTSGLP-------AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       547 -----------~~~i~~lP-------tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                                 .|.+.++|       ++|+.++|+++..+.|...       .++|+..|.
T Consensus       128 ~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~-------~~~l~~~i~  181 (190)
T 2vup_A          128 AHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGAS-------VKDIEKKLI  181 (190)
T ss_dssp             BCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCC-------HHHHHHHHH
T ss_pred             ccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCC-------HHHHHHHHH
Confidence                       13667788       6667799999998877533       355555554

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.18  E-value=2.3e-06  Score=73.50  Aligned_cols=62  Identities=26%  Similarity=0.397  Sum_probs=49.8

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++..|.|.|.. .||||+|.+.+.+    ....++||.+|.+||+|+++|.|++||    |||.++.+.++
T Consensus         9 ~~~~v~l~k~~g~~lG~~i~~~~~~----~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~   75 (101)
T 2yt7_A            9 NCREVHLEKRRGEGLGVALVESGWG----SLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPL   75 (101)
T ss_dssp             CCEEEEEECCTTCCCCEEEEECCCS----SSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCH
T ss_pred             ceEEEEEEeCCCCccCEEEEeCCCC----CCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            45668888766 7899999873111    134579999999999999988899999    89999988665

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=98.17  E-value=3.6e-06  Score=80.69  Aligned_cols=92  Identities=9%  Similarity=0.057  Sum_probs=71.1

Q ss_pred             CCceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc---------------------------hhchhh
Q psy12938        497 RHITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV---------------------------GDHFSA  546 (612)
Q Consensus       497 ~~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~---------------------------~d~~~~  546 (612)
                      ++.+||++|| ++||++|+...+.|.+++++|.  ++.|+.|..+..                           ...+..
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  111 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISR  111 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHH
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHHH
Confidence            3568999999 9999999999999999999884  589998876530                           114567


Q ss_pred             hCCCC-----CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        547 TFKTS-----GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       547 ~~~i~-----~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .|.+.     .+|+++++ ++|+++..++|....   +...++|...|.+.
T Consensus       112 ~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~---~~~~~~l~~~l~~l  159 (198)
T 1zof_A          112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPL---GRNADEMLRMVDAL  159 (198)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSC---CCHHHHHHHHHHHH
T ss_pred             HhCCcccCCcccceEEEECCCCEEEEEEecCCCC---CCCHHHHHHHHHHH
Confidence            88998     99988888 799999999885322   23456677766543

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.17  E-value=1.6e-06  Score=76.29  Aligned_cols=60  Identities=30%  Similarity=0.355  Sum_probs=49.6

Q ss_pred             eEEEEEEeeCCCC-cceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~g-lG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ...+|.|.|+..| |||++.+   +.+   ...+++|..|.+||+|++.|+|++||    |||.++.+.++
T Consensus        24 ~~~~V~l~~~~~~~lG~~l~~---~~~---~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~   88 (114)
T 2gzv_A           24 VPGKVTLQKDAQNLIGISIGG---GAQ---YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTK   88 (114)
T ss_dssp             CCEEEEEECCTTSCCSEEEEE---CCC-----CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CCEEEEEEECCCCcEeEEEEe---CCC---CCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCH
Confidence            4456999999855 9999999   443   23589999999999999999999999    89999976544

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.15  E-value=1.5e-06  Score=83.65  Aligned_cols=63  Identities=32%  Similarity=0.416  Sum_probs=53.4

Q ss_pred             cceeEEEEEEeeC-CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        309 EKLTLLGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       309 ~~~~~~~v~l~k~-~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ....+..|.|.|. ..||||+|.|   |.+   ...|+||..|.+||+|++.| |++||    |||.++.++++.
T Consensus        81 ~~~~~~~v~l~k~~~~~lG~~i~~---~~~---~~~~~~V~~V~~gspA~~aG-L~~GD~Il~vng~~v~~~~~~  148 (192)
T 3k1r_A           81 RSRKLKEVRLDRLHPEGLGLSVRG---GLE---FGCGLFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHE  148 (192)
T ss_dssp             CCSSCEEEEEETTSTTCCCEEEEE---EGG---GTEEEEEEEECTTSHHHHTT-CCTTEEEEEETTEECTTCCHH
T ss_pred             CCCceEEEEEEeCCCCceeEEEEc---ccc---cCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHH
Confidence            3446778999998 5899999999   433   34589999999999999999 99999    999999997664

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.14  E-value=2.7e-06  Score=78.79  Aligned_cols=42  Identities=5%  Similarity=0.091  Sum_probs=37.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG  538 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~  538 (612)
                      ++.+|+|+||++||++|+...+.|.+++++|.  +++|+.|+.+
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d   74 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCN   74 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECC
Confidence            34589999999999999999999999999986  3999999764

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.14  E-value=5.6e-07  Score=79.19  Aligned_cols=60  Identities=38%  Similarity=0.593  Sum_probs=51.5

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+.|.|.|+..||||+|.+   +.+..  ..|+||..|.+||+|++.|+|++||    |||.++.++++
T Consensus        18 ~~~v~l~~~~~glG~~l~~---~~~~~--~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~   81 (116)
T 2dm8_A           18 EMIIEISKGRSGLGLSIVG---GKDTP--LNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSH   81 (116)
T ss_dssp             CEEEEEECCSSCCCCCCBC---CTTSS--CSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCH
T ss_pred             EEEEEEEECCCcccEEEeC---CCCCC--cCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCH
Confidence            4669999999999999998   54432  2489999999999999999999999    89999998654

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.12  E-value=1.2e-06  Score=73.97  Aligned_cols=56  Identities=23%  Similarity=0.396  Sum_probs=48.4

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..|.|.|+..||||++.+   +.+    ..|+||..|.+||+|++.| |++||    |||.++.+++|
T Consensus         7 r~v~l~~~~~~~G~~l~~---~~~----~~~~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   66 (95)
T 3r68_A            7 RVVVIKKGSNGYGFYLRA---GPE----QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDH   66 (95)
T ss_dssp             EEEEEECBTTBCSCEEEE---C------CCSEEEECCCTTSHHHHHT-CCTTEEEEEETTEECTTCCH
T ss_pred             EEEEEecCCCcccEEEEe---cCC----CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCH
Confidence            458999999999999998   332    1489999999999999999 99999    89999998755

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.12  E-value=2e-06  Score=74.21  Aligned_cols=58  Identities=28%  Similarity=0.399  Sum_probs=49.9

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.|.. .+|||+|.+   +.+   ...|+||..|.++++|++.| |++||    |||..+.++++
T Consensus        16 ~~~v~l~k~~~~~lG~~~~~---~~~---~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   78 (104)
T 1wi2_A           16 PRIVTLKKPPGAQLGFNIRG---GKA---SQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEH   78 (104)
T ss_dssp             CEEEEECCCTTCCCSEEEEC---CSS---SCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCH
T ss_pred             CEEEEEEeCCCCCccEEEEc---ccC---CCCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3569999988 789999999   444   23589999999999999999 99999    89999988655

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=98.11  E-value=1.8e-06  Score=71.85  Aligned_cols=55  Identities=29%  Similarity=0.392  Sum_probs=45.2

Q ss_pred             EEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        315 GVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       315 ~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +|.+ ++..+|||+|.+   +.+.   ..|++|..|.++|+|++.| |++||    |||.++.++++
T Consensus         5 ~v~~-~~~~~lG~~l~~---~~~~---~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   63 (87)
T 2pa1_A            5 TVDV-AGPAPWGFRITG---GRDF---HTPIMVTKVAERGKAKDAD-LRPGDIIVAINGESAEGMLH   63 (87)
T ss_dssp             EEEE-CSSSCCSEEEEE---EGGG---TEEEEEEEECSSSHHHHTT-CCTTCEEEEETTEESTTCCH
T ss_pred             EEEE-CCCCccCEEEec---ccCC---CCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4555 456799999999   4432   3589999999999999999 99999    89999988644

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.11  E-value=1.1e-06  Score=83.30  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=62.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCC-------chhc---hhhh------------------
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGC-------VGDH---FSAT------------------  547 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~-------~~d~---~~~~------------------  547 (612)
                      +.+|||.||++||++|+...+.|.+|+++|.+  +.|+.|+.+.       ..+.   ..++                  
T Consensus        49 Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~g~~  128 (181)
T 2p31_A           49 GSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTG  128 (181)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSSTT
T ss_pred             CCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecccCCcc
Confidence            45899999999999999999999999999963  8999997542       1101   1111                  


Q ss_pred             ------CCCCCCc--------EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        548 ------FKTSGLP--------AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       548 ------~~i~~lP--------tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                            |.+..+|        ++|+.++|+++..+.|..       ..++|+..|.+
T Consensus       129 ~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~~~g~~-------~~~~l~~~i~~  178 (181)
T 2p31_A          129 AHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTV-------SVEEVRPQITA  178 (181)
T ss_dssp             SCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEEECTTS-------CHHHHHHHHHT
T ss_pred             chhhhhhhhhcCCCccccceeEEEEcCCCCEEEEeCCCC-------CHHHHHHHHHH
Confidence                  1133467        778889999999887642       34778777754

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.11  E-value=3.3e-06  Score=71.28  Aligned_cols=55  Identities=20%  Similarity=0.360  Sum_probs=48.7

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ...+|.|.|+..||||.+.+          +.|++|..|.++++|++.| |++||    |||..+.++.+
T Consensus         8 ~~r~v~l~~~~~~~G~~l~~----------~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   66 (93)
T 2dls_A            8 VQRCVIIQKDQHGFGFTVSG----------DRIVLVQSVRPGGAAMKAG-VKEGDRIIKVNGTMVTNSSH   66 (93)
T ss_dssp             CEEEEEEECSSSSCCEEEEC----------SSSCEEEEECSSSTTTTTT-CCSSCEEEEETTEECSSSCH
T ss_pred             CCEEEEEEeCCCceeEEEeC----------CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            45669999999999999987          2479999999999999999 99999    89999988655

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.09  E-value=3.4e-06  Score=79.01  Aligned_cols=88  Identities=24%  Similarity=0.318  Sum_probs=67.6

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc-cc------
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV-GA------  379 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~-~~------  379 (612)
                      .+.+|.|.|+. .+|||++.+         .+.|+||..|.+|++|++.| |+.||    |||..+.++++ ..      
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~---------~~~g~~V~~v~~~spA~~aG-l~~GD~I~~ing~~v~~~~~~~~~~~~~~   73 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKS---------IDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQ   73 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEE---------ETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCcEeEEEEe---------CCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            34669999976 589999998         34689999999999999999 99999    88888866433 00      


Q ss_pred             -----------CC-----------CCcccce-----EEEEeeccccccccCcceeccC
Q psy12938        380 -----------DA-----------GLEKLGI-----FVKTITEAGAAARDGRIQVRRG  410 (612)
Q Consensus       380 -----------~~-----------~~~~~~i-----~i~~i~~~~~a~~dg~l~~~~~  410 (612)
                                 ..           .....|+     +|..+.++++|++.| |+.+|-
T Consensus        74 ~~~~~v~l~vr~~~~~~~v~l~~~~~~~lG~~~~~g~v~~v~~~s~a~~aG-l~~GD~  130 (166)
T 1w9e_A           74 AFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNG-LLTEHN  130 (166)
T ss_dssp             CCSSEEEEEEECCTTCEEEEEECCTTSCCSEEEETTEEEEECTTSHHHHTT-CCSSEE
T ss_pred             CCCCEEEEEEEcCCCcEEEEEecCCCCcEeEEEeCCEEEEEccCCHHHHcC-CCCCCE
Confidence                       00           0122344     889999999999988 777774

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=98.09  E-value=7.3e-07  Score=74.94  Aligned_cols=57  Identities=21%  Similarity=0.342  Sum_probs=48.4

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.|+..||||++.+   +.    +..|++|..|.+||+|++.| |++||    |||.++.++++
T Consensus         4 pr~v~l~k~~~~~G~~l~~---~~----~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   64 (91)
T 2vsp_A            4 PKLCRLAKGENGYGFHLNA---IR----GLPGSFIKEVQKGGPADLAG-LEDEDVIIEVNGVNVLDEPY   64 (91)
T ss_dssp             EEEEEEECBTTBTSCCCBC---CT----TCSCCBC-CCCTTSHHHHTT-CCTTCEEEEETTEECTTSCH
T ss_pred             cEEEEEEeCCCcccEEEEe---cc----CCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4569999999999999988   32    23489999999999999999 99999    89999987655

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.09  E-value=3.9e-06  Score=68.22  Aligned_cols=72  Identities=11%  Similarity=0.135  Sum_probs=51.9

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchh---hhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFS---ATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~---~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      |+.|+++||+.|+.+.+.|+++     .++|..++.+..+ .+.   .++++..+|++  |.+|+.++   |        
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-----~i~~~~vdi~~~~-~~~~~~~~~g~~~vP~~--~~~g~~~~---g--------   63 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVP-EAAEALRAQGFRQLPVV--IAGDLSWS---G--------   63 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCH-HHHHHHHHTTCCSSCEE--EETTEEEE---S--------
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-----CCCeEEEECCCCH-HHHHHHHHhCCCccCEE--EECCEEEe---c--------
Confidence            5679999999999999999875     4677888877543 222   25899999998  56887532   2        


Q ss_pred             CCHHHHHHHHHHCC
Q psy12938        579 YFVEDVEAFLVEAG  592 (612)
Q Consensus       579 ~~~~~lE~~L~~~g  592 (612)
                      +..+.|+.+|.++.
T Consensus        64 ~~~~~l~~~l~~~~   77 (81)
T 1h75_A           64 FRPDMINRLHPAPH   77 (81)
T ss_dssp             CCHHHHGGGSCCC-
T ss_pred             CCHHHHHHHHhccc
Confidence            34577887775543

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=98.08  E-value=3.1e-06  Score=71.87  Aligned_cols=64  Identities=22%  Similarity=0.325  Sum_probs=49.4

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCC-CCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGA-DAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~-~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.|+. .+|||+|.+.+... .....+.|++|..|.++|+|++.| |++||    |||.++.++++
T Consensus         5 ~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   74 (96)
T 2ego_A            5 RKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAG-LTPGDTIASVNGLNVEGIRH   74 (96)
T ss_dssp             EEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             cEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4569999998 69999999732110 011124589999999999999999 99999    89999988654

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.08  E-value=4.7e-06  Score=76.97  Aligned_cols=42  Identities=12%  Similarity=0.097  Sum_probs=37.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG  538 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~  538 (612)
                      ++.+|+|+||++||++|+...+.|.+++++|.  ++.|+.|..+
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d   73 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCN   73 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            34589999999999999999999999999986  4999999764

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.08  E-value=4.4e-06  Score=74.31  Aligned_cols=65  Identities=18%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             ceeEEEEEEeeCC-CCcceEEEeccCCCCCC-CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGA-EGLGLSIIGMGVGADAG-LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~-~glG~si~g~~~g~~~~-~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.++|.|.|+. .||||+|.+   +.... ....+++|..|.++++|++.|+|++||    |||..+.++++
T Consensus        13 ~~~~~~v~l~k~~~~glG~~l~~---~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~   83 (122)
T 1v5q_A           13 HTETTEVVLTADPVTGFGIQLQG---SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTF   83 (122)
T ss_dssp             CEEEEEEEECCCSSSSSCEEEEC---CSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCH
T ss_pred             cceeEEEEEEeCCCCccCEEEec---ccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            3467789999985 899999998   42211 134579999999999999999999999    89999988554

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.08  E-value=8.4e-06  Score=78.51  Aligned_cols=89  Identities=4%  Similarity=0.003  Sum_probs=68.9

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc---------------------------hhchhhh
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV---------------------------GDHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~---------------------------~d~~~~~  547 (612)
                      +.+||+.|| ++||+.|....+.|.+++++|  .++.|+.|..+..                           ...+...
T Consensus        36 gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~  115 (202)
T 1uul_A           36 GKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIMKS  115 (202)
T ss_dssp             TSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHH
T ss_pred             CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHHHH
Confidence            458999999 999999999999999999998  5699999987531                           1135667


Q ss_pred             CCCC------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        548 FKTS------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       548 ~~i~------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      |.+.      .+|+++++ ++|+++..++|....   +-..++|.+.|.
T Consensus       116 ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~---~~~~~ell~~l~  161 (202)
T 1uul_A          116 YGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPV---GRDVDEALRLVK  161 (202)
T ss_dssp             HTCEETTTTEECEEEEEECTTSBEEEEEEECTTB---CCCHHHHHHHHH
T ss_pred             cCCccCCCCceeeEEEEECCCCEEEEEEeCCCCC---CCCHHHHHHHHH
Confidence            8888      89988888 899999998875432   234556655554

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.08  E-value=4.7e-06  Score=79.30  Aligned_cols=42  Identities=5%  Similarity=0.014  Sum_probs=36.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG  538 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~  538 (612)
                      ++.+|||.||++||++|+...+.|.+|+++|.  ++.|+.|..+
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   88 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSN   88 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECc
Confidence            34589999999999999999999999999986  3899988654

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.07  E-value=3.9e-06  Score=69.90  Aligned_cols=57  Identities=21%  Similarity=0.346  Sum_probs=46.1

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .++++|.|.|+..||||++.+   ..+    ..|++|..| ++++|+ .| |++||    |||.++.++++
T Consensus         2 ~~~~~v~l~k~~~g~G~~~~~---~~~----~~~~~v~~v-~~spA~-aG-l~~GD~I~~vng~~v~~~~~   62 (88)
T 3bpu_A            2 MELITVHIVKGPMGFGFTIAD---SPG----GGGQRVKQI-VDSPRS-RG-LKEGDLIVEVNKKNVQALTH   62 (88)
T ss_dssp             EEEEEEEEECBTTBSSCEEEE---CTT----SSSEEEEEC-CC--CC-TT-CCTTCEEEEETTEECTTSCH
T ss_pred             CcEEEEEEEcCCCceeEEEEe---cCC----CCcEEEEEe-cCChhH-hC-CCCCCEEEEECCEEcCCCCH
Confidence            367889999999999999998   322    348999997 999998 66 99999    89999988654

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.06  E-value=4.3e-06  Score=73.34  Aligned_cols=63  Identities=22%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             eEEEEEEeeC-CCCcceEEEeccCCCCCCC-C---ccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKG-AEGLGLSIIGMGVGADAGL-E---KLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~-~~glG~si~g~~~g~~~~~-~---~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +..+|.|.|. ..||||+|.+   +.+... +   ..+++|..|.+|++|+++..|++||    |||.++.++++
T Consensus        10 ~~~~v~l~~~~~~~lGf~l~~---~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~   81 (114)
T 1uew_A           10 QTSDVVIHRKENEGFGFVIIS---SLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPH   81 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEEC---CCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCH
T ss_pred             cceEEEEEECCCCCCCEEEEe---ecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCH
Confidence            4566889885 4899999999   443322 1   2378999999999999944499999    89999988654

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.06  E-value=7.1e-06  Score=68.57  Aligned_cols=50  Identities=14%  Similarity=0.291  Sum_probs=43.6

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      .+-..|+|++||+|++|||+++.++++++++.+|+.+++.|+|++.+...
T Consensus        33 pA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~~~~   82 (88)
T 3e17_A           33 LATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLRDLE   82 (88)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECCC--
T ss_pred             HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeCCCc
Confidence            34455679999999999999999999999999999999999999987544

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=98.06  E-value=3.1e-06  Score=72.64  Aligned_cols=63  Identities=29%  Similarity=0.489  Sum_probs=48.4

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCC------CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGL------EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~------~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.++|.|.|.. .+|||++.+   +.+...      ...|+||.+|.+||+|++.|+|++||    |||.++.++++
T Consensus         4 dp~~v~l~~~~~~~lG~~~~~---~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~   77 (103)
T 2fcf_A            4 QPRRVELWREPSKSLGISIVG---GRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH   77 (103)
T ss_dssp             SCEEEEECCCC-CCCCEEEEC---CCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             CCEEEEEEeCCCCceeEEEEc---cCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            34668998887 679999998   333211      23589999999999999999999999    89999988655

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.05  E-value=6.3e-06  Score=71.61  Aligned_cols=61  Identities=23%  Similarity=0.342  Sum_probs=48.7

Q ss_pred             EEEEEEee-CCCCcceEEEeccCCCCCC---------CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMK-GAEGLGLSIIGMGVGADAG---------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k-~~~glG~si~g~~~g~~~~---------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.| ...||||+|.+   +.+..         ....|++|..|.+|++|++.| |++||    |||.++.+++|
T Consensus         8 ~~~v~l~~~~~~g~G~~l~~---~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   82 (109)
T 1q3o_A            8 EKTVLLQKKDSEGFGFVLRG---AKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGH   82 (109)
T ss_dssp             EEEEEEECCTTSCCSEEEEE---SSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             cEEEEEEECCCCCCcEEEEe---ccCCCCcccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            45688875 45899999999   43321         123489999999999999999 99999    89999988755

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.05  E-value=5.8e-06  Score=72.60  Aligned_cols=46  Identities=28%  Similarity=0.246  Sum_probs=41.8

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~   97 (612)
                      .++|++||+|++|||.++.+++|++++.+|+.+  +..|+|+|.|...
T Consensus        47 ~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~   94 (113)
T 3soe_A           47 CQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP   94 (113)
T ss_dssp             STTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred             hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence            468999999999999999999999999999986  5699999999654

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.05  E-value=1.2e-05  Score=78.77  Aligned_cols=90  Identities=12%  Similarity=0.094  Sum_probs=71.4

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc---------------------------hhchhhh
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV---------------------------GDHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~---------------------------~d~~~~~  547 (612)
                      ..+||+.|| ++||+.|+...+.|.+++++|  .+++|+.|..+..                           ...+...
T Consensus        56 Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~  135 (220)
T 1zye_A           56 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  135 (220)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHHHH
Confidence            358999999 999999999999999999998  5799999876521                           1135678


Q ss_pred             CCCC------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        548 FKTS------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       548 ~~i~------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      |.+.      .+|+++++ ++|+++..++|...   .+...++|.+.|.+
T Consensus       136 ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~---~~~~~~ell~~l~~  182 (220)
T 1zye_A          136 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLP---VGRSVEETLRLVKA  182 (220)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTT---CCCCHHHHHHHHHH
T ss_pred             hCCeecCCCcccceEEEECCCCEEEEEEecCCC---CCCCHHHHHHHHHH
Confidence            8888      99999999 89999998887522   23456777776654

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.05  E-value=4.2e-06  Score=71.03  Aligned_cols=60  Identities=13%  Similarity=0.287  Sum_probs=47.3

Q ss_pred             eEEEEEEeeCCC---CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAE---GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~---glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ....|.|.|...   +|||+|.+.   ...  +..|+||..|.+||+|++.| |+.||    |||.++.++++
T Consensus         6 ~~~~v~i~k~~~~~~~~Gf~v~~~---~~~--~~~g~~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~   72 (94)
T 3kzd_A            6 VTHSIHIEKSDTAADTYGFSLSSV---EED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNS   72 (94)
T ss_dssp             EEEEEEEEC------CCSEEEEEE---CSS--SSCEEEEEEECTTSHHHHTT-CCTTCEEEEETTEEGGGCCH
T ss_pred             ceeEEEEEeCCCCcCCcCEEEEec---CCC--CcCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            345688888874   899999983   221  34589999999999999999 99999    89999998655

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=1.4e-06  Score=73.39  Aligned_cols=54  Identities=22%  Similarity=0.268  Sum_probs=46.0

Q ss_pred             EEEEEeeC-CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~-~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..|.|.|. ..+|||+|.+         ...|++|.+|.+||+|++.|.|++||    |||.++ +.++
T Consensus         8 r~v~l~k~~~~~lG~~i~~---------~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~   66 (91)
T 2e7k_A            8 RMVGIRKTAGEHLGVTFRV---------EGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDP   66 (91)
T ss_dssp             CBCCBCCCTTCCCCEEEEE---------SSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCH
T ss_pred             EEEEEEECCCCcEeEEEEe---------cCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCH
Confidence            34778765 4789999998         24589999999999999999999999    899999 7655

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.05  E-value=1.7e-06  Score=74.49  Aligned_cols=58  Identities=22%  Similarity=0.393  Sum_probs=48.9

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.++|.|. +..+|||+|.|   |.+.   +.+++|.+|.++++|++.| |++||    |||..+.++++
T Consensus         5 ~~~~v~l~-~~~~~G~~l~g---g~~~---~~~v~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   66 (103)
T 1wf7_A            5 SSGSVSLV-GPAPWGFRLQG---GKDF---NMPLTISSLKDGGKASQAH-VRIGDVVLSIDGISAQGMTH   66 (103)
T ss_dssp             CCEEEEEE-SSSCCSCCEEE---ETTT---TEEEEECCCCTTCHHHHTT-CCTTCBEEEETTEECSSCCH
T ss_pred             CEEEEEEe-CCCccCEEEec---cccC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            45678887 56899999999   5542   4579999999999999999 99999    89999988644

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.04  E-value=3.6e-06  Score=79.61  Aligned_cols=41  Identities=10%  Similarity=0.152  Sum_probs=36.6

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG  538 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~  538 (612)
                      +.+|||.||++||+.|+...+.|.+++++|.  .+.|+.|..+
T Consensus        47 gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   89 (183)
T 2obi_A           47 GFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCN   89 (183)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            4589999999999999999999999999986  4999998754

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.03  E-value=3.2e-06  Score=72.50  Aligned_cols=57  Identities=23%  Similarity=0.364  Sum_probs=49.3

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.|+..||||++.+   +.+    ..|++|..|.+|++|++.| |++||    |||..+.++++
T Consensus         7 ~r~v~l~k~~~g~G~~l~~---~~~----~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   67 (102)
T 2d90_A            7 GRVVVIKKGSNGYGFYLRA---GPE----QKGQIIKDIEPGSPAEAAG-LKNNDLVVAVNGKSVEALDH   67 (102)
T ss_dssp             SEEEEEECCSSSSSCEEEE---CSS----SSSEEEECCCTTSTTTTTT-CCTTCEEEEESSCBCTTSCH
T ss_pred             CEEEEEeeCCCCccEEEEe---ecC----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4569999999999999998   332    3489999999999999999 99999    89999988653

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.02  E-value=9e-06  Score=77.50  Aligned_cols=89  Identities=15%  Similarity=0.142  Sum_probs=69.0

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc---------------------------hhchhhh
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV---------------------------GDHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~---------------------------~d~~~~~  547 (612)
                      +.+||++|| ++||+.|....+.|.+++++|  .++.|+.|..+..                           ...+...
T Consensus        31 gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  110 (192)
T 2h01_A           31 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARS  110 (192)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHHHH
Confidence            458999999 999999999999999999998  5799999876521                           0135678


Q ss_pred             CCCC-----CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        548 FKTS-----GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       548 ~~i~-----~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      |.+.     .+|+++++ ++|+++..++|....   +...+++.+.|.
T Consensus       111 ~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~---~~~~~~l~~~l~  155 (192)
T 2h01_A          111 YDVLFNESVALRAFVLIDKQGVVQHLLVNNLAL---GRSVDEILRLID  155 (192)
T ss_dssp             TTCEETTTEECCEEEEECTTSBEEEEEEGGGSS---GGGHHHHHHHHH
T ss_pred             hCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCC---CCCHHHHHHHHH
Confidence            8888     89999999 899999988774221   224455655554

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=98.02  E-value=4.8e-06  Score=70.82  Aligned_cols=56  Identities=20%  Similarity=0.390  Sum_probs=48.2

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..|.|.|+..||||++.+   +.    +..|++|..|.++|+|++.| |++||    |||.++.++++
T Consensus        11 ~~~~l~~~~~g~G~~~~~---~~----~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   70 (98)
T 2jxo_A           11 RLCTMKKGPSGYGFNLHS---DK----SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQH   70 (98)
T ss_dssp             EEEEEECTTTCCCEEEEC---CC----SSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             EEEEEEeCCCcccEEEEe---cC----CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            448899999999999998   33    23489999999999999999 99999    89999988554

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.01  E-value=1.2e-06  Score=72.26  Aligned_cols=54  Identities=15%  Similarity=0.289  Sum_probs=48.0

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.|+..||||++.+   +       .|++|..|.+|++|++.| |++||    |||.++.++++
T Consensus         3 ~r~v~l~~~~~g~G~~~~~---~-------~~~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   60 (83)
T 2kv8_A            3 VRSVEVARGRAGYGFTLSG---Q-------APCVLSCVMRGSPADFVG-LRAGDQILAVNEINVKKASH   60 (83)
T ss_dssp             EEEEEECCCSSCCSCBCCC---S-------SSCBCCBCCTTSTTTTTT-CCTTCEEEEETTEECSSCCH
T ss_pred             cEEEEEEeCCCcccEEEEc---C-------CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4679999999999999977   2       279999999999999999 99999    89999998754

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=98.01  E-value=4.7e-06  Score=71.64  Aligned_cols=59  Identities=32%  Similarity=0.385  Sum_probs=46.5

Q ss_pred             EEEEeeCC----CCcceEEEeccCCCCCC---------CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        315 GVELMKGA----EGLGLSIIGMGVGADAG---------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       315 ~v~l~k~~----~glG~si~g~~~g~~~~---------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .|++.|..    .+|||+|.|   +.+..         ....|+||..|.++|+|++.| |++||    |||.++.+++|
T Consensus         7 ~i~~~~~~~~~~~~lG~~i~g---~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   82 (104)
T 3sfj_A            7 RVEIHKLRQGENLILGFSIGG---GIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTMVTH   82 (104)
T ss_dssp             EEEEECEEETTEEECSEEEEE---CTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             EEEEEEccCCCCCcccEEEEC---ccccCccccccccCCCCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            35665544    269999998   44421         235699999999999999999 99999    89999988664

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.00  E-value=1.3e-06  Score=76.36  Aligned_cols=59  Identities=32%  Similarity=0.522  Sum_probs=51.3

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.+.|.|.|...||||+|.+   +.+    ..|++|..|.++++|++.|+|++||    |||..+.++++
T Consensus        15 ~~~~v~l~k~~~glG~~l~~---~~~----~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~   77 (113)
T 1um7_A           15 EPRKIILHKGSTGLGFNIVG---GED----GEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATH   77 (113)
T ss_dssp             SEEEEEEECCSSCSSBCCBC---CST----TCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCH
T ss_pred             ceEEEEEEECCCcccEEEEe---ccC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            45679999999999999998   332    3589999999999999999999999    89999988654

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.25  E-value=8.1e-07  Score=78.06  Aligned_cols=59  Identities=29%  Similarity=0.436  Sum_probs=49.0

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.+|.|.|.. .||||++.+   |.+.   ..|++|.+|.+||+|++++.|++||    |||.++.++++
T Consensus        28 ~~~v~l~k~~~~glG~~l~~---g~~~---~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~   91 (112)
T 2lob_A           28 IRKVLLLKEDHEGLGISITG---GKEH---GVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKH   91 (112)
Confidence            4458888866 899999999   5442   3589999999999999965599999    89999988765

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=97.99  E-value=5.5e-06  Score=73.91  Aligned_cols=61  Identities=30%  Similarity=0.514  Sum_probs=49.0

Q ss_pred             EEEEEeeCC-CCcceEEEeccCCCCCC------CCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGA-EGLGLSIIGMGVGADAG------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~-~glG~si~g~~~g~~~~------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+|.+.|.. .+|||++.+   +.+..      ....|++|..|.+||+|++.|+|++||    |||.++.++++
T Consensus        26 ~~v~l~k~~~~~lGi~v~~---~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~   97 (123)
T 2iwq_A           26 RRVELWREPSKSLGISIVG---GRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASH   97 (123)
T ss_dssp             EEEEECCCTTSCCSEEEEE---CC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCH
T ss_pred             EEEEEEecCCCCccEEEEe---ccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            458888875 689999998   33221      123589999999999999999999999    89999988654

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=2.1e-06  Score=74.14  Aligned_cols=57  Identities=23%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.|+..||||+|.+   +.    +..|+||..|.++++|++.| |++||    |||.++.++++
T Consensus         9 ~r~v~l~k~~~~~G~~l~~---~~----~~~g~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   69 (106)
T 2eei_A            9 PRLCYLVKEGGSYGFSLKT---VQ----GKKGVYMTDITPQGVAMRAG-VLADDHLIEVNGENVEDASH   69 (106)
T ss_dssp             SEEEEEECCSSSCSCCEEC---CS----SCCSCEECCCCTTSHHHHHT-CCSSEEEEEETTEECTTCCH
T ss_pred             CEEEEEEECCCCCCEEEEe---cc----CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3559999999999999988   32    24589999999999999999 99999    89999987655

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.99  E-value=2.4e-05  Score=62.22  Aligned_cols=68  Identities=15%  Similarity=0.261  Sum_probs=50.5

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhh---hCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSA---TFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~---~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      ++.|+++||+.|+.+.+.|+++     ++.|..++.+..+ .+.+   .+++..+|++++  +|+.   +.|        
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-----~i~~~~~di~~~~-~~~~~~~~~~~~~vP~l~~--~g~~---~~g--------   63 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDD-EARDYVMALGYVQAPVVEV--DGEH---WSG--------   63 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCH-HHHHHHHHTTCBCCCEEEE--TTEE---EES--------
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-----CCCcEEEECCCCH-HHHHHHHHcCCCccCEEEE--CCeE---EcC--------
Confidence            5668999999999999999876     4677777777543 2333   789999999984  8874   233        


Q ss_pred             CCHHHHHHHH
Q psy12938        579 YFVEDVEAFL  588 (612)
Q Consensus       579 ~~~~~lE~~L  588 (612)
                      +..+.|+.+|
T Consensus        64 ~~~~~l~~~l   73 (75)
T 1r7h_A           64 FRPERIKQLQ   73 (75)
T ss_dssp             CCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            3457788776

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=97.98  E-value=8.4e-06  Score=76.90  Aligned_cols=91  Identities=13%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCC-------chh---chhhh-C----CC---------
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGC-------VGD---HFSAT-F----KT---------  550 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~-------~~d---~~~~~-~----~i---------  550 (612)
                      ++.+|+|+||++||++|+...+.|.+|+++|.+  +.|+.|..+.       ..+   ...++ +    .+         
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~  116 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGS  116 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCCSST
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeeccCc
Confidence            345999999999999999999999999999964  8999886432       100   11122 1    11         


Q ss_pred             -------------CCCc-----EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        551 -------------SGLP-----AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       551 -------------~~lP-----tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                                   ..+|     ++|+.++|+++..+.|....   +-..+.|+.+|.+
T Consensus       117 ~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~~~g~~~~---~~l~~~i~~lL~~  171 (180)
T 3kij_A          117 EGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPI---EVIRPDIAALVRQ  171 (180)
T ss_dssp             TCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEEECTTCCG---GGTHHHHHHHHHH
T ss_pred             cccHHHHHHHhcCCCCccccceEEEECCCCCEEEEECCCCCH---HHHHHHHHHHHHH
Confidence                         1245     68999999999998775333   2334667776654

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=97.96  E-value=2.6e-05  Score=72.25  Aligned_cols=89  Identities=12%  Similarity=0.040  Sum_probs=65.2

Q ss_pred             ceEEEEEeCCC-ChhhhhhHHHHHHHHhhcCCceEEEecCCCc----------------------hhchhhhCCCCC---
Q psy12938        499 ITVIAHLSSPS-LPACRALNSSLAELSRSHTNVKFVSVPLGCV----------------------GDHFSATFKTSG---  552 (612)
Q Consensus       499 ~~Vvvhfy~~~-~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~----------------------~d~~~~~~~i~~---  552 (612)
                      .++|++||+.| |++|+...+.|.+++++|.++.|+.|..+..                      ...+...|.+..   
T Consensus        45 k~~vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~  124 (167)
T 2jsy_A           45 KVTIISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEAFGVYIKEL  124 (167)
T ss_dssp             SCEEEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHHTTCBBTTT
T ss_pred             CeEEEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHHhCCccccC
Confidence            47999999999 9999999999999999998899999876631                      013445677765   


Q ss_pred             ---CcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        553 ---LPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       553 ---lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                         .|+++++ ++|+++..++|....  .....+++.+.|.
T Consensus       125 g~~~p~~~lid~~G~i~~~~~g~~~~--~~~~~~~l~~~l~  163 (167)
T 2jsy_A          125 RLLARSVFVLDENGKVVYAEYVSEAT--NHPNYEKPIEAAK  163 (167)
T ss_dssp             CSBCCEEEEECTTSCEEEEEECSBTT--SCCCSHHHHHHHH
T ss_pred             CceeeEEEEEcCCCcEEEEEecCCcC--CCCCHHHHHHHHH
Confidence               3876666 799999999875221  2223455555554

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.96  E-value=2.8e-06  Score=71.80  Aligned_cols=58  Identities=21%  Similarity=0.236  Sum_probs=48.0

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..++|.| ++..+|||++.|   |.+.   ..+++|..|.++++|++.| |++||    |||..+.++++
T Consensus         8 ~~~~v~l-~~~~~~G~~l~g---g~~~---~~~v~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   69 (94)
T 2eeg_A            8 MPHSVTL-RGPSPWGFRLVG---GRDF---SAPLTISRVHAGSKAALAA-LCPGDLIQAINGESTELMTH   69 (94)
T ss_dssp             CCEEEEE-CCSSCCSCCEEC---CTTT---TSCCEECCCCSSSHHHHTT-CCTTCEEEEETTEETTTCCH
T ss_pred             ceEEEEE-eCCCccCEEEEC---ccCC---CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4456888 455799999999   5553   4589999999999999999 99999    89999987643

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.96  E-value=1.4e-05  Score=69.17  Aligned_cols=50  Identities=24%  Similarity=0.370  Sum_probs=44.4

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP   98 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~   98 (612)
                      +...|+|++||+|++|||+++.++++.+++.+++.++..|.|+|.|..+.
T Consensus        54 A~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~  103 (107)
T 1uhp_A           54 AAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTSG  103 (107)
T ss_dssp             HHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCSS
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCCCC
Confidence            33445799999999999999999999999999999999999999987653

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.96  E-value=1.6e-05  Score=74.48  Aligned_cols=40  Identities=18%  Similarity=0.249  Sum_probs=35.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEec
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVP  536 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~  536 (612)
                      ....+|+.|++.||+.|+.+.+.|..+.++|++++|.-.+
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~   60 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYRE   60 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            4557899999999999999999999999999988877654

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=97.96  E-value=9.7e-06  Score=71.79  Aligned_cols=50  Identities=22%  Similarity=0.282  Sum_probs=44.4

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++-..|+|++||+|++|||.++.++++++++.+|+.+++.|+|+|.|...
T Consensus        65 pA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~v~R~~~  114 (118)
T 3b76_A           65 VISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLKALEVKE  114 (118)
T ss_dssp             HHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCSEEEEEEEEEEE
T ss_pred             HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            33445679999999999999999999999999999999999999998643

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.96  E-value=5.2e-06  Score=71.07  Aligned_cols=59  Identities=27%  Similarity=0.454  Sum_probs=48.8

Q ss_pred             eEEEEEEee--CCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMK--GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k--~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++.+|.|.+  ...||||+|.+   +.+   ...|++|..|.++++|++.| |++||    |||..+.++.+
T Consensus         8 ~~~~v~l~~~~~~~~lG~~~~~---~~~---~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   72 (101)
T 1uez_A            8 EVRLVSLRRAKAHEGLGFSIRG---GSE---HGVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTH   72 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEE---CTT---TTCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCH
T ss_pred             ccEEEEEEECCCCCcccEEEeC---CCC---CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCcCH
Confidence            455577776  45799999999   443   23589999999999999999 99999    89999988765

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.96  E-value=8.5e-06  Score=73.25  Aligned_cols=87  Identities=14%  Similarity=0.210  Sum_probs=59.3

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc---h---hchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV---G---DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~---~---d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      |++ |+++||+.|+.+.+.|+.+.     +.|..++++..   +   +.+...+.+..+|+|  |.+|+.++.+-.+.+.
T Consensus        29 vvv-f~~~~Cp~C~~~~~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l--~i~G~~igg~~~l~~~  100 (130)
T 2cq9_A           29 VVI-FSKTSCSYCTMAKKLFHDMN-----VNYKVVELDLLEYGNQFQDALYKMTGERTVPRI--FVNGTFIGGATDTHRL  100 (130)
T ss_dssp             EEE-EECSSCSHHHHHHHHHHHHT-----CCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE--EETTEEEEEHHHHHHH
T ss_pred             EEE-EEcCCChHHHHHHHHHHHcC-----CCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE--EECCEEEcChHHHHHH
Confidence            555 99999999999999999984     34445555432   2   136678899999998  4599877653222111


Q ss_pred             ccCCCCHHHHHHHHHHCCcccCCCC
Q psy12938        575 LGEGYFVEDVEAFLVEAGLLRAGGL  599 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~g~l~~~~~  599 (612)
                          +....|+.+|.+.|+.....-
T Consensus       101 ----~~~~~L~~~L~~~g~~~~~~~  121 (130)
T 2cq9_A          101 ----HKEGKLLPLVHQCYLKKSKRK  121 (130)
T ss_dssp             ----HHHTSSHHHHHHHSSSCSSCS
T ss_pred             ----HHcCcHHHHHHHcCcHHHhHH
Confidence                111458889999998765553

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=97.95  E-value=4.5e-06  Score=71.16  Aligned_cols=61  Identities=16%  Similarity=0.297  Sum_probs=47.4

Q ss_pred             EEEeeCCCCcceEEEeccCC-CCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        316 VELMKGAEGLGLSIIGMGVG-ADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       316 v~l~k~~~glG~si~g~~~g-~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      |.|.|+..||||+|.+.... .++.....|++|..|.+||+|++.| |++||    |||.++.++++
T Consensus         6 v~l~~~~~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   71 (99)
T 3khf_A            6 IVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAG-LRAGDLITHINGESVLGLVH   71 (99)
T ss_dssp             EEEEC-CCCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             EEEEeCCCCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            88899999999999983111 0111123488999999999999999 99999    89999998765

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=97.95  E-value=7.3e-06  Score=68.67  Aligned_cols=57  Identities=18%  Similarity=0.196  Sum_probs=46.7

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .++|.+.. ..+|||++.+   +.+   ...|++|..|.++|+|++.| |++||    |||.++.++.+
T Consensus         4 ~~~v~~~~-~~~~G~~l~~---~~~---~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   64 (91)
T 2pkt_A            4 TQQIDLQG-PGPWGFRLVG---GKD---FEQPLAISRVTPGSKAALAN-LCIGDVITAIDGENTSNMTH   64 (91)
T ss_dssp             EEEEEEES-SSCCSEEEEE---EGG---GTEEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             cEEEEECC-CCCCCEEEEc---cCC---CCCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            35576764 4689999999   443   23589999999999999999 99999    89999988663

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=97.93  E-value=6.8e-06  Score=78.79  Aligned_cols=53  Identities=30%  Similarity=0.431  Sum_probs=42.9

Q ss_pred             CCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        323 EGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       323 ~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .||||+|.|+-.+.+.+.  .+.|+||.+|.+||+|++ | |++||    |||.++.+++|
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-g-l~~GD~I~~vng~~v~~~~~   60 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-L-LQPGDKIIQANGYSFINIEH   60 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-T-CCTTCEEEEETTEECTTCCH
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-C-CCCCCEEEEECCEECCCCCH
Confidence            589999999322222222  567999999999999999 7 99999    89999998775

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=97.92  E-value=8.6e-06  Score=68.58  Aligned_cols=48  Identities=21%  Similarity=0.253  Sum_probs=42.4

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +-..|+|++||+|++|||.++.++++++++.+|+.+++.|+|+|.|..
T Consensus        41 A~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~   88 (93)
T 3o46_A           41 ADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITFKIIPGS   88 (93)
T ss_dssp             HHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEEEEECC-
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            334557999999999999999999999999999999999999998753

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=97.92  E-value=7.3e-06  Score=74.72  Aligned_cols=62  Identities=31%  Similarity=0.365  Sum_probs=49.7

Q ss_pred             eEEEEEEeeCC----CCcceEEEeccCCCCCC---------CCccceEEEEeccCchhcccCCccccc----CCceeeee
Q psy12938        312 TLLGVELMKGA----EGLGLSIIGMGVGADAG---------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIG  374 (612)
Q Consensus       312 ~~~~v~l~k~~----~glG~si~g~~~g~~~~---------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g  374 (612)
                      .+.+|.|.|..    .+|||+|.|   |.+..         ....|++|..|.+||+|++.| |++||    |||.++.+
T Consensus        23 ~~~~v~l~~~~~~~~~~lG~~i~~---g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~   98 (139)
T 2vz5_A           23 MVQRVEIHKLRQGENLILGFSIGG---GIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAG-LQIGDKIMQVNGWDMTM   98 (139)
T ss_dssp             EEEEEEEECEEETTEEECSEEEEE---CTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTT
T ss_pred             ceEEEEEEEcCCCCcccccEEEEc---cccCChhhhhhcccCCCCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEEcCC
Confidence            45678888755    379999998   44321         124699999999999999999 99999    89999987


Q ss_pred             ccc
Q psy12938        375 MGV  377 (612)
Q Consensus       375 ~~~  377 (612)
                      +++
T Consensus        99 ~~~  101 (139)
T 2vz5_A           99 VTH  101 (139)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            654

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=97.91  E-value=1.7e-05  Score=68.89  Aligned_cols=50  Identities=16%  Similarity=0.327  Sum_probs=43.4

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC---CCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT---SGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~---~~~v~l~v~R~~~   97 (612)
                      ++-..|+|++||+|++|||+++.+++|++++.+|+.+   .+.|+|+|.|...
T Consensus        45 pA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           45 AVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             HHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred             hHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence            3444567999999999999999999999999999887   5689999998654

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=97.90  E-value=1.6e-05  Score=75.08  Aligned_cols=47  Identities=66%  Similarity=0.928  Sum_probs=42.8

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +-..|+|++||+|++|||+++.+++|.+++.+|+.++..|+|+|.|.
T Consensus       124 A~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~~g~~v~L~V~R~  170 (170)
T 3egg_C          124 AHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRE  170 (170)
T ss_dssp             HHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHHCCSEEEEEEEEC
T ss_pred             HHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            33456799999999999999999999999999999999999999984

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=97.90  E-value=3.4e-05  Score=75.26  Aligned_cols=89  Identities=15%  Similarity=0.114  Sum_probs=67.3

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCc---------------------------hhchhhh
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCV---------------------------GDHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~---------------------------~d~~~~~  547 (612)
                      +.+|||.|| ++||+.|....+.|.+++++|  .+++|+.|..+..                           ...++..
T Consensus        52 gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~  131 (213)
T 2i81_A           52 KKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKD  131 (213)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHHHH
Confidence            458999999 999999999999999999998  5799998876531                           0135677


Q ss_pred             CCCC-----CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        548 FKTS-----GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       548 ~~i~-----~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      |.+.     .+|+++++ ++|+++..+++....   +-..++|.+.|.
T Consensus       132 ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~---~~~~~ell~~l~  176 (213)
T 2i81_A          132 YNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAI---GRSVDEILRIID  176 (213)
T ss_dssp             TTCEETTTEECEEEEEECTTSBEEEEEEECTTC---CCCHHHHHHHHH
T ss_pred             hCCccccCCcccEEEEECCCCEEEEEEecCCCC---CCCHHHHHHHHH
Confidence            8888     78977776 799999998775322   224566665554

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=97.90  E-value=1.3e-05  Score=66.86  Aligned_cols=46  Identities=30%  Similarity=0.401  Sum_probs=41.7

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ..|+|++||+|++|||.++.++++++++.+|+.+.+.|+|+|.|..
T Consensus        40 ~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~   85 (88)
T 1kwa_A           40 RQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIVPSY   85 (88)
T ss_dssp             HHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEECCC
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEECCc
Confidence            3367999999999999999999999999999998889999998754

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.89  E-value=2.5e-06  Score=76.40  Aligned_cols=63  Identities=27%  Similarity=0.374  Sum_probs=49.0

Q ss_pred             EEEEeeCCCCcceEEEec----------------------cCCCCCCCCccceEEEEeccCchhcccCCccccc----CC
Q psy12938        315 GVELMKGAEGLGLSIIGM----------------------GVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GL  368 (612)
Q Consensus       315 ~v~l~k~~~glG~si~g~----------------------~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vn  368 (612)
                      +|.|.|+..||||+|.+.                      |........+.|++|..|.++++|++.| |++||    ||
T Consensus        11 ~v~l~r~~~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aG-L~~GD~I~~in   89 (126)
T 2yuy_A           11 TVTLKRTSQGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAG-LCTGDRIIKVN   89 (126)
T ss_dssp             CEEEECCSSSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHT-CCSSCCCCEET
T ss_pred             EEEEEECCCCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcC-CCCCCEEEEEC
Confidence            499999999999999861                      0000000123579999999999999999 99999    89


Q ss_pred             ceeeeecccc
Q psy12938        369 GLSIIGMGVG  378 (612)
Q Consensus       369 g~~~~g~~~~  378 (612)
                      |.++.++++.
T Consensus        90 g~~v~~~~~~   99 (126)
T 2yuy_A           90 GESVIGKTYS   99 (126)
T ss_dssp             TEECSSCCHH
T ss_pred             CEECCCCCHH
Confidence            9999987663

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=97.89  E-value=1.5e-05  Score=70.62  Aligned_cols=49  Identities=31%  Similarity=0.450  Sum_probs=43.8

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-..|+|++||+|++|||.++.++++.+++.+|+.+++.|+|+|.|...
T Consensus        66 A~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g~  114 (120)
T 2iwo_A           66 AAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQVVAGGD  114 (120)
T ss_dssp             HHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEECCTT
T ss_pred             HHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            3344689999999999999999999999999999999999999998643

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=97.88  E-value=1.3e-05  Score=71.89  Aligned_cols=47  Identities=32%  Similarity=0.581  Sum_probs=42.7

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC-------CCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-------SGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-------~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||+++.+++|++++.+|+.+       +..|+|+|.|...
T Consensus        70 ~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A           70 KDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             HHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred             HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence            4557999999999999999999999999999976       7899999999765

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=1e-05  Score=69.15  Aligned_cols=59  Identities=34%  Similarity=0.571  Sum_probs=49.5

Q ss_pred             eEEEEEEeeCCCC-cceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~g-lG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .+++|.|.|...+ |||++.+   +.+   ...|++|..|.++++|++.| |++||    |||..+.++++
T Consensus        10 ~~~~v~l~~~~~~~lG~~~~~---~~~---~~~gv~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   73 (100)
T 2eeh_A           10 IIHSVRVEKSPAGRLGFSVRG---GSE---HGLGIFVSKVEEGSSAERAG-LCVGDKITEVNGLSLESTTM   73 (100)
T ss_dssp             EECCEEECCCSSSSCSEEEEC---CTT---TTCCEEEEEECTTSHHHHHT-CCSSCEEEEETTEECSSCCH
T ss_pred             eEEEEEEEECCCCCccEEEEc---ccc---CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4566999998855 9999998   433   23589999999999999999 99999    89999988653

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=97.86  E-value=1.5e-05  Score=69.43  Aligned_cols=58  Identities=22%  Similarity=0.404  Sum_probs=48.7

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +++|.|.|+. .||||++.+   +.    +..|++|..|.+||+|++.|-|++||    |||.++.++++
T Consensus         2 ~~~v~l~~~~~~glG~~~~~---~~----~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~   64 (112)
T 1qau_A            2 VISVRLFKRKVGGLGFLVKE---RV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY   64 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEE---CS----SSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCH
T ss_pred             EEEEEEEcCCCCceeEEEEe---cC----CCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            5679998885 899999998   32    23589999999999999999559999    89999988544

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=97.86  E-value=5.5e-05  Score=74.10  Aligned_cols=92  Identities=9%  Similarity=0.060  Sum_probs=70.8

Q ss_pred             CceEEEEEeC-CCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------------hchhhh
Q psy12938        498 HITVIAHLSS-PSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------------DHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy~-~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------------d~~~~~  547 (612)
                      ..+|||.||+ .||++|....+.|.+++++|.  ++.|+-|..+...                           ..+...
T Consensus        69 Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~  148 (222)
T 3ztl_A           69 GKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEISKA  148 (222)
T ss_dssp             TSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHH
T ss_pred             CCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHHHH
Confidence            4589999997 999999999999999999994  5999988776310                           134567


Q ss_pred             CCCC------CCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        548 FKTS------GLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       548 ~~i~------~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      |.+.      .+|+++++ ++|+++..+.+....   +-..+++...|.+..
T Consensus       149 ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~---~~~~~~il~~l~~l~  197 (222)
T 3ztl_A          149 YGVFDEEDGNAFRGLFIIDPNGILRQITINDKPV---GRSVDETLRLLDAFQ  197 (222)
T ss_dssp             TTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTB---CCCHHHHHHHHHHHH
T ss_pred             cCCeecCCCCccceEEEECCCCeEEEEEecCCCC---CCCHHHHHHHHHHhh
Confidence            8887      78988888 799999999886443   234677777766543

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=97.85  E-value=1.4e-05  Score=71.41  Aligned_cols=58  Identities=19%  Similarity=0.364  Sum_probs=49.5

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ....|.|.++..||||++.+   +.+    ..|++|..|.++|+|++.| |++||    |||.++.++++
T Consensus         9 ~~r~v~l~~~~~g~G~~l~~---~~~----~~gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   70 (128)
T 2kjd_A            9 RPRLCTMKKGPSGYGFNLHS---DKS----KPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQH   70 (128)
T ss_dssp             CCEEEEEECCSSSCCEEEEE---CSS----SCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             CcEEEEEecCCCcccEEEEe---cCC----CCCEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            34568999999999999998   332    3489999999999999999 99999    89999988654

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.85  E-value=1.2e-05  Score=70.77  Aligned_cols=57  Identities=30%  Similarity=0.447  Sum_probs=49.2

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +...|.|.+...+|||++.+   +.     +.|+||..|.+|++|++.| |++||    |||..+.++++
T Consensus        19 ~~~~v~l~~~~~~lG~~~~~---~~-----~~gv~V~~V~~~spA~~aG-L~~GD~Il~vng~~v~~~~~   79 (117)
T 1uit_A           19 EPRHVKVQKGSEPLGISIVS---GE-----KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATE   79 (117)
T ss_dssp             CCEEEEEECSSCCCCEEEEE---CT-----TSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCH
T ss_pred             CCEEEEEEeCCCCccEEEEc---cC-----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            34569999999999999998   32     3489999999999999999 99999    89999988654

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.85  E-value=1.8e-05  Score=68.17  Aligned_cols=50  Identities=24%  Similarity=0.357  Sum_probs=43.5

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHh-----CCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRN-----TSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-----~~~~v~l~v~R~~~   97 (612)
                      ++...|+|++||+|++|||+++.+++|++++.+|+.     ....++|+|.|...
T Consensus        44 ~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~~   98 (103)
T 1ufx_A           44 SAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNS   98 (103)
T ss_dssp             HHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred             hHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEEEccc
Confidence            344456799999999999999999999999999998     57889999998754

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=97.84  E-value=1.6e-05  Score=77.38  Aligned_cols=42  Identities=12%  Similarity=0.080  Sum_probs=36.7

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG  538 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~  538 (612)
                      +..+|||+||++||++|+...+.|.+|+++|.  .+.|+.|+.+
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            34589999999999999999999999999985  4899988764

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.83  E-value=1.6e-05  Score=67.56  Aligned_cols=56  Identities=21%  Similarity=0.339  Sum_probs=46.0

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+.++|.|.|+..||||+|.+         ...|+||..|.++  |++.| |++||    |||.++.+++|.
T Consensus         9 ~~~~~v~l~~~~~g~G~~i~~---------~~~Gv~V~~v~~~--a~~aG-L~~GD~I~~vng~~v~~~~~~   68 (96)
T 1ujv_A            9 AELMTLTIVKGAQGFGFTIAD---------SPTGQRVKQILDI--QGCPG-LCEGDLIVEINQQNVQNLSHT   68 (96)
T ss_dssp             CCCEEEEEECCSSSSSEEEEE---------ETTEEEEEEESCG--GGSTT-CCSSCEEEEETTEECSSCCHH
T ss_pred             ceEEEEEEEeCCCceeEEEEc---------CCCCEEEEEEecc--cccCC-CCCCCEEEEECCEECCCCCHH
Confidence            356779999999999999987         2337999999994  55555 99999    899999997663

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=97.83  E-value=3e-05  Score=84.05  Aligned_cols=92  Identities=21%  Similarity=0.309  Sum_probs=67.8

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHh--cCCCeEEEEEeecCCC------------Cch---------------------
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLR--NTSGLVRFLIGREKDP------------VNS---------------------   45 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk--~~~~~v~l~v~r~~~~------------~~~---------------------   45 (612)
                      +||+|++|||..+.+..  +...+|.  ..+..+.|+|.|+...            ...                     
T Consensus       283 ~GD~I~~vnG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~~~~~~~gl~~~~~~~~~~~~  360 (436)
T 4a8c_A          283 AGDIITSLNGKPLNSFA--ELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKD  360 (436)
T ss_pred             CCCEEEEECCEECCCHH--HHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCCCcccccccccccCceeeecccccccC
Confidence            59999999999998764  4444444  4578999998886210            000                     


Q ss_pred             -----hhHHhhhc------ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         46 -----EVAQLIRQ------SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        46 -----~i~~i~~G------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                           .|..+..|      +|+.||+|++|||+.+.  +.++...+|+..++.+.|+|.|..
T Consensus       361 ~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g  420 (436)
T 4a8c_A          361 GGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAIIALQIVRGN  420 (436)
T ss_pred             CCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHHhCCCeEEEEEEECC
Confidence                 01111111      69999999999999997  678999999998889999999864

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=97.83  E-value=1e-05  Score=70.61  Aligned_cols=54  Identities=11%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+|.|.|++.+|||++.+          ..+++|..|.+|++|++.| |+.||    |||.++.++++
T Consensus        24 ~r~v~l~k~~~~~G~~l~~----------~~~v~V~~V~~gspA~~AG-L~~GD~Il~VnG~~v~~~~~   81 (109)
T 2vsv_A           24 PRSIRFTAEEGDLGFTLRG----------NAPVQVHFLDPYCSASVAG-AREGDYIVSIQLVDCKWLTL   81 (109)
T ss_dssp             CEEEEECCGGGCCCEEEES----------SSSCEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCH
T ss_pred             CEEEEEEeCCCceeEEEeC----------CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3569999999999999976          2368999999999999999 99999    89999987543

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.83  E-value=3.1e-05  Score=68.19  Aligned_cols=49  Identities=20%  Similarity=0.211  Sum_probs=43.9

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-..|+|++||+|++|||+++.+++|.+++.+|+.++..|+|+|.|...
T Consensus        62 A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~  110 (117)
T 1ujd_A           62 AEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             HHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCC
T ss_pred             HHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEEEECCc
Confidence            3345569999999999999999999999999999999999999998654

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=97.82  E-value=1.3e-05  Score=72.07  Aligned_cols=46  Identities=22%  Similarity=0.390  Sum_probs=41.1

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCC-ceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG-LVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~-~v~l~v~R~~~   97 (612)
                      .|+|++||+|++|||+++.+++|++++.+|+.+.+ .|.|+|.|...
T Consensus        73 aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~  119 (130)
T 1i16_A           73 SETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             SCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred             cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCCC
Confidence            35899999999999999999999999999999865 59999988643

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.82  E-value=2.5e-05  Score=67.71  Aligned_cols=48  Identities=21%  Similarity=0.237  Sum_probs=42.3

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC-CCceEEEEeecC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREK   96 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~~   96 (612)
                      +...|+|++||+|++|||+++.++++++++.+|+.+ .+.|+|+|.|..
T Consensus        57 A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~~  105 (108)
T 2d92_A           57 AERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSGP  105 (108)
T ss_dssp             HHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECCC
T ss_pred             HHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence            344567999999999999999999999999999996 578999999864

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.82  E-value=3.4e-05  Score=66.68  Aligned_cols=51  Identities=67%  Similarity=0.901  Sum_probs=45.1

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP   98 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~   98 (612)
                      ++...|+|++||+|++|||+++.++++.+++.+++.++..|+|+|.|....
T Consensus        52 pA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~  102 (107)
T 1wf8_A           52 AAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKPS  102 (107)
T ss_dssp             HHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEECCC
T ss_pred             HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Confidence            344455699999999999999999999999999999999999999997653

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=97.82  E-value=3.2e-05  Score=68.20  Aligned_cols=48  Identities=35%  Similarity=0.464  Sum_probs=43.1

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +-..|+|++||+|++|||.++.++++.+++.+|+.++..|+|+|.|..
T Consensus        67 A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~  114 (117)
T 2byg_A           67 AQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLKVGKPT  114 (117)
T ss_dssp             HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            334556999999999999999999999999999999999999999853

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.81  E-value=1.2e-05  Score=78.64  Aligned_cols=80  Identities=18%  Similarity=0.254  Sum_probs=56.9

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEe--cC-------------------------------------
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSV--PL-------------------------------------  537 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki--~~-------------------------------------  537 (612)
                      ....+|+.||++||+.|+.+.+.|.+++..  +++|.-+  +.                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~--~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~  162 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL--GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPAS  162 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhH
Confidence            456899999999999999999999999864  4554432  11                                     


Q ss_pred             -----CCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        538 -----GCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       538 -----~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                           +.. ..+..+|.+.+.||+ ++.||.   .+.|..       ..++|+.+|.+
T Consensus       163 ~~~~v~~~-~~l~~~~gV~gtPt~-v~~dG~---~~~G~~-------~~~~l~~~l~~  208 (216)
T 1eej_A          163 CDVDIADH-YALGVQLGVSGTPAV-VLSNGT---LVPGYQ-------PPKEMKEFLDE  208 (216)
T ss_dssp             CSCCHHHH-HHHHHHHTCCSSSEE-ECTTSC---EEESCC-------CHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHcCCCccCEE-EEcCCe---EecCCC-------CHHHHHHHHHH
Confidence                 011 135678999999999 567884   344542       34788888765

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=97.81  E-value=2.7e-05  Score=66.04  Aligned_cols=47  Identities=26%  Similarity=0.421  Sum_probs=42.8

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||+++.++++.+++.+++..++.|+|+|.|..+
T Consensus        46 ~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~p   92 (96)
T 2qkv_A           46 IDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSMEVTRPKP   92 (96)
T ss_dssp             HHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred             hcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEEEeCCc
Confidence            34569999999999999999999999999999999999999998654

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=97.81  E-value=2.4e-05  Score=67.25  Aligned_cols=45  Identities=24%  Similarity=0.354  Sum_probs=41.8

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      |+|++||+|++|||.++.++++.+++.+|+.+++.|+|+|.|...
T Consensus        52 ~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~   96 (103)
T 2dc2_A           52 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVYVAL   96 (103)
T ss_dssp             TCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEEEEEEEECC-
T ss_pred             CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEecCC
Confidence            579999999999999999999999999999999999999998654

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=97.79  E-value=4.6e-05  Score=71.56  Aligned_cols=72  Identities=14%  Similarity=0.191  Sum_probs=57.4

Q ss_pred             CceEEEEEeCCC-ChhhhhhHHHHHHHHhhcCCceEEEecCCCc---------------------hhchhhhCCCCCC--
Q psy12938        498 HITVIAHLSSPS-LPACRALNSSLAELSRSHTNVKFVSVPLGCV---------------------GDHFSATFKTSGL--  553 (612)
Q Consensus       498 ~~~Vvvhfy~~~-~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~---------------------~d~~~~~~~i~~l--  553 (612)
                      +.++|+.||+.| |++|+...+.|.+++++ .++.|+.|..+..                     ...+...|.+...  
T Consensus        44 gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~-~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~  122 (175)
T 1xvq_A           44 GKSVLLNIFPSVDTPVCATSVRTFDERAAA-SGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGVTIADG  122 (175)
T ss_dssp             TSCEEEEECSCCCSSCCCHHHHHHHHHHHH-TTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTCBBCSS
T ss_pred             CCEEEEEEEeCCCCchHHHHHHHHHHHHhh-cCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCCccccc
Confidence            347999999999 99999999999999988 8899999987621                     0135677888766  


Q ss_pred             -------cEE-EEEECCEEeeEEEe
Q psy12938        554 -------PAM-LAYRGGEVVGNFVR  570 (612)
Q Consensus       554 -------Ptl-lvyk~G~~~~~~vg  570 (612)
                             |++ ++-++|+++..++|
T Consensus       123 ~~~g~~~p~~~lid~~G~I~~~~~g  147 (175)
T 1xvq_A          123 PMAGLLARAIVVIGADGNVAYTELV  147 (175)
T ss_dssp             TTTTSBCSEEEEECTTSBEEEEEEC
T ss_pred             ccCCcccceEEEECCCCeEEEEEEC
Confidence                   554 55589999998875

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=97.78  E-value=3.2e-05  Score=64.50  Aligned_cols=45  Identities=27%  Similarity=0.347  Sum_probs=41.6

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      ..|+|++||+|++|||.++.++++.+++.+++.++..++|+|.|.
T Consensus        45 ~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~l~v~r~   89 (90)
T 1qav_A           45 QTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM   89 (90)
T ss_dssp             HTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEC
T ss_pred             hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEe
Confidence            335899999999999999999999999999999999999999885

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=97.78  E-value=4.1e-05  Score=66.23  Aligned_cols=50  Identities=30%  Similarity=0.413  Sum_probs=44.3

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++-..|+|++||+|++|||.++.++++.+++.+++.+++.|+|+|.|...
T Consensus        44 pA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   93 (106)
T 4amh_A           44 AAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGS   93 (106)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEEECCSS
T ss_pred             HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence            34445679999999999999999999999999999999999999998643

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.78  E-value=1.4e-05  Score=86.86  Aligned_cols=54  Identities=28%  Similarity=0.513  Sum_probs=47.0

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..|.|.|+ .||||+|.|   |.     +.||||.+|.+||+|++.| |++||    |||.++.++++
T Consensus         3 r~V~l~k~-~~lG~~i~g---g~-----~~Gi~V~~V~~gspA~~aG-L~~GD~Il~VNG~~v~~~t~   60 (468)
T 3shw_A            3 KLVKFRKG-DSVGLRLAG---GN-----DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIR   60 (468)
T ss_dssp             EEEEEECC-SSCCEEEEE---ET-----TTEEEEEEECSSSHHHHTT-CCTTEEEEEETTEECTTCCH
T ss_pred             eEEEEecC-CccceEEEc---cC-----cCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            45888897 789999999   43     3589999999999999999 99999    89999988544

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.78  E-value=1.6e-05  Score=73.17  Aligned_cols=86  Identities=15%  Similarity=0.206  Sum_probs=55.3

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc-h---hchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV-G---DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~-~---d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      |++ |+++||+.|+.+.+.|+.+.-.|   .++.|+.+.. +   +.+...+.+..+|++  |.+|+.++.+-.+.+...
T Consensus        51 Vvv-f~~~~Cp~C~~~k~~L~~~~i~~---~~vdId~~~~~~~~~~~L~~~~g~~tvP~i--fi~G~~igG~d~l~~l~~  124 (146)
T 2ht9_A           51 VVI-FSKTSCSYCTMAKKLFHDMNVNY---KVVELDLLEYGNQFQDALYKMTGERTVPRI--FVNGTFIGGATDTHRLHK  124 (146)
T ss_dssp             EEE-EECTTCHHHHHHHHHHHHHTCCC---EEEEGGGCTTHHHHHHHHHHHHSCCCSCEE--EETTEEEESHHHHHHHHH
T ss_pred             EEE-EECCCChhHHHHHHHHHHcCCCe---EEEECccCcCCHHHHHHHHHHhCCCCcCeE--EECCEEEeCchHHHHHHH
Confidence            555 99999999999999999985432   3344443311 2   136678899999998  469987764322211111


Q ss_pred             CCCCHHHHHHHHHHCCcccC
Q psy12938        577 EGYFVEDVEAFLVEAGLLRA  596 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~g~l~~  596 (612)
                      .    ..|+.+|.+.|+...
T Consensus       125 ~----g~L~~~L~~~g~~~~  140 (146)
T 2ht9_A          125 E----GKLLPLVHQCYLKKS  140 (146)
T ss_dssp             T----TCHHHHHHHTTC---
T ss_pred             c----ChHHHHHHHcCcchh
Confidence            1    358889988887544

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.78  E-value=2.2e-05  Score=69.28  Aligned_cols=50  Identities=16%  Similarity=0.238  Sum_probs=43.2

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC----CCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT----SGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~----~~~v~l~v~R~~~   97 (612)
                      ++-..|+|++||+|++|||.++.+++|++++.+|+..    +..|+|+|.|..+
T Consensus        55 pA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~~~  108 (118)
T 1v6b_A           55 AAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPP  108 (118)
T ss_dssp             HHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCS
T ss_pred             HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcCCCeEEEEEEeCCc
Confidence            3444568999999999999999999999999999875    7799999998644

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.78  E-value=5.3e-06  Score=73.32  Aligned_cols=63  Identities=21%  Similarity=0.290  Sum_probs=47.5

Q ss_pred             EEEEeCCCChhhhhh-HHHHHHHHhhcCCceEEEecCCCch------hchhhhCCCCCCcEEEEEECCEEeeEE
Q psy12938        502 IAHLSSPSLPACRAL-NSSLAELSRSHTNVKFVSVPLGCVG------DHFSATFKTSGLPAMLAYRGGEVVGNF  568 (612)
Q Consensus       502 vvhfy~~~~~~C~~m-~~~l~~LA~~~~~vkF~ki~~~~~~------d~~~~~~~i~~lPtllvyk~G~~~~~~  568 (612)
                      |+-|+.+||+.|+.+ .+.|+.+..  +.+.|..++.+..+      +.+.+.+....+|++  |.+|+.++.+
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~~--~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v--fi~g~~igG~   96 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLKV--PRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI--YINGKHIGGN   96 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSCC--CGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE--EETTEEEESH
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcCC--CCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE--EECCEEEEcH
Confidence            445999999999999 888877652  34778877776432      246678899999986  7899987633

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=97.76  E-value=4.8e-05  Score=69.94  Aligned_cols=74  Identities=14%  Similarity=0.183  Sum_probs=56.9

Q ss_pred             eEEEEEe-CCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCc--------------------hhchhhhCCCCCCc---
Q psy12938        500 TVIAHLS-SPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCV--------------------GDHFSATFKTSGLP---  554 (612)
Q Consensus       500 ~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~--------------------~d~~~~~~~i~~lP---  554 (612)
                      +||++|| +.||+.|...-+.|.++.++|.. -.|+-|..+..                    ...+...|.+...|   
T Consensus        37 ~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~p~~g  116 (159)
T 2a4v_A           37 VVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLSG  116 (159)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSSC
T ss_pred             eEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccccCC
Confidence            7899987 89999999999999999888752 16776665421                    01345678888888   


Q ss_pred             ----EEEEEECCEEeeEEEecccc
Q psy12938        555 ----AMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       555 ----tllvyk~G~~~~~~vg~~~~  574 (612)
                          ++++ ++|+++..+.|....
T Consensus       117 ~~~~~~li-~~G~i~~~~~g~~~~  139 (159)
T 2a4v_A          117 SIRSHFIF-VDGKLKFKRVKISPE  139 (159)
T ss_dssp             BCCEEEEE-ETTEEEEEEESCCHH
T ss_pred             ccceEEEE-cCCEEEEEEccCCcc
Confidence                7888 999999999886433

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=1.4e-05  Score=70.26  Aligned_cols=60  Identities=13%  Similarity=0.261  Sum_probs=49.7

Q ss_pred             eEEEEEEeeCCC---CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAE---GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~---glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .++.|.|.|...   +|||+|.+   ..+.  +..|++|..|.++++|++.| |++||    |||..+..+++
T Consensus        15 ~~~~v~l~k~~~~~~~~G~~v~~---~~~~--~~~gv~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~   81 (114)
T 2d8i_A           15 VTQSIHIEKSDTAADTYGFSLSS---VEED--GIRRLYVNSVKETGLASKKG-LKAGDEILEINNRAADALNS   81 (114)
T ss_dssp             EEEEEEEECSCTTTCCCCCEEEE---EEET--TEEEEEEEECCTTSSHHHHT-CCTTCCEEEESSCBGGGCCH
T ss_pred             ceEEEEEEeCCCCccccCEEEEe---cCcC--CcCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCcCH
Confidence            567799999875   79999998   2221  22589999999999999999 99999    89999988653

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=97.75  E-value=4e-05  Score=66.39  Aligned_cols=48  Identities=25%  Similarity=0.389  Sum_probs=43.4

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ...|+|++||+|++|||+++.++++.+++.+++..++.|.|+|.|...
T Consensus        39 ~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~   86 (106)
T 2la8_A           39 EIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEVTRPKP   86 (106)
T ss_dssp             HHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEEEECCS
T ss_pred             HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence            345569999999999999999999999999999999999999999754

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=97.74  E-value=1.8e-05  Score=68.22  Aligned_cols=56  Identities=16%  Similarity=0.191  Sum_probs=47.8

Q ss_pred             EEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..|.|.|.. .+|||.+.+   +.    ...|+||..|.+||+|++.| |++||    |||.++.+++|
T Consensus         3 r~v~l~~~~~~~~G~~l~~---~~----~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~~   63 (106)
T 3ngh_A            3 RESKLSKQEGQNYGFFLRI---EK----DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEH   63 (106)
T ss_dssp             EEEEEECCTTCCCCCEEEC---CT----TCCSCEEECCCTTSHHHHTT-CCTTCEEEEETTEECTTSCH
T ss_pred             EEEEEEeCCCCeeCEEEEE---Ee----CCCCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            358888888 789999998   33    23489999999999999999 99999    89999988764

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=97.74  E-value=6.6e-05  Score=63.34  Aligned_cols=48  Identities=29%  Similarity=0.475  Sum_probs=42.7

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      -..|+|++||+|++|||+++.++++.+++.+++.++..|.|+|.|...
T Consensus        47 ~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   94 (96)
T 1d5g_A           47 ESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS   94 (96)
T ss_dssp             HHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEECCSC
T ss_pred             HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence            344569999999999999999999999999999988999999988643

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.74  E-value=4.2e-05  Score=66.53  Aligned_cols=49  Identities=20%  Similarity=0.284  Sum_probs=42.3

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCC----CceEEEEeecC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS----GLVRFLIGREK   96 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~----~~v~l~v~R~~   96 (612)
                      ++...|+|++||+|++|||+++.+++|++++.+|+.+.    ..++|.+.|..
T Consensus        53 ~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~  105 (109)
T 1wi4_A           53 DCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIRSG  105 (109)
T ss_dssp             HHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEECCC
T ss_pred             hHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEeCC
Confidence            34455679999999999999999999999999999865    67889888864

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=97.73  E-value=5e-05  Score=67.85  Aligned_cols=47  Identities=30%  Similarity=0.511  Sum_probs=42.7

Q ss_pred             hhcccCCCCEEEEECCeecC-CCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLV-GVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~-~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||+++. ++++.+++.+|+.++..|+|+|.|...
T Consensus        69 ~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~r~~~  116 (128)
T 2db5_A           69 RDQRLKENDQILAINHTPLDQNISHQQAIALLQQTTGSLRLIVAREPV  116 (128)
T ss_dssp             HTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHCCSEEEEEEEECCC
T ss_pred             HcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence            34569999999999999997 999999999999999999999998754

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=97.73  E-value=4.2e-05  Score=65.47  Aligned_cols=45  Identities=22%  Similarity=0.375  Sum_probs=41.1

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK   96 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~   96 (612)
                      .|+|++||+|++|||+++.+.++++++.+|+.  .+..|+|+|.|..
T Consensus        53 ~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~   99 (101)
T 2yt7_A           53 SGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHCP   99 (101)
T ss_dssp             GSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence            36799999999999999999999999999998  6789999998864

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=97.73  E-value=2.3e-05  Score=68.43  Aligned_cols=50  Identities=64%  Similarity=0.902  Sum_probs=44.7

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++-..|+|++||+|++|||.++.++++.+++.+++.++..|+|+|.|...
T Consensus        47 ~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   96 (113)
T 2g5m_B           47 AAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFMIGRERP   96 (113)
T ss_dssp             HHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHHSCSSCEEEEEECCC
T ss_pred             HHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeCCC
Confidence            34445679999999999999999999999999999999999999999765

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.73  E-value=9.2e-06  Score=69.48  Aligned_cols=57  Identities=21%  Similarity=0.334  Sum_probs=45.2

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      ..++|.+.+ ..+|||+|.|   +.+.   ..+++|.+|.++++|++.|.|++||    |||..+.++
T Consensus        11 ~~~~v~~~~-~~~~G~~~~g---g~~~---~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~   71 (100)
T 2edp_A           11 QYVPVQLQG-GAPWGFTLKG---GLEH---CEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS   71 (100)
T ss_dssp             EEEEEECCS-CSCCCCCEEE---EGGG---TEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC
T ss_pred             EEEEEEECC-CCCcCEEEec---cCCC---CCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch
Confidence            445555543 3689999999   4442   3589999999999999996699999    899999874

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.73  E-value=4.9e-05  Score=66.96  Aligned_cols=47  Identities=26%  Similarity=0.265  Sum_probs=42.9

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||+.+.++++++++.+|+..+..|+|+|.|...
T Consensus        57 ~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  103 (117)
T 1v62_A           57 RSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQ  103 (117)
T ss_dssp             HHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTT
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEECCC
Confidence            34569999999999999999999999999999889999999998654

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=97.73  E-value=5.4e-05  Score=68.13  Aligned_cols=49  Identities=20%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCC--CceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~--~~v~l~v~R~~~   97 (612)
                      +-..|+|++||+|++|||+++.+++|++++.+|+.+.  ..|+|+|.|...
T Consensus        78 A~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~  128 (131)
T 1wfg_A           78 ADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSGP  128 (131)
T ss_dssp             HHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEECS
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence            3345569999999999999999999999999999875  889999998643

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=97.72  E-value=6.8e-05  Score=62.70  Aligned_cols=48  Identities=31%  Similarity=0.401  Sum_probs=43.0

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +-..|.|++||+|++|||+++.++++.++..+++.++..|+|+|.|..
T Consensus        42 A~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   89 (92)
T 2qg1_A           42 ADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTLEVGRIS   89 (92)
T ss_dssp             HHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEccc
Confidence            334556999999999999999999999999999999999999999865

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=97.72  E-value=6.6e-05  Score=66.19  Aligned_cols=47  Identities=38%  Similarity=0.528  Sum_probs=42.5

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      -..|+|++||+|++|||.++.++++.+++.+|+.+++.|+|+|.|..
T Consensus        67 ~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g  113 (117)
T 2fne_A           67 SEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVLSSD  113 (117)
T ss_dssp             HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECS
T ss_pred             HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            34556999999999999999999999999999999889999999864

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=97.72  E-value=9.4e-05  Score=62.60  Aligned_cols=47  Identities=21%  Similarity=0.355  Sum_probs=42.1

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||..+.++++.+++.+|+..+..|.|+|.|...
T Consensus        45 ~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   91 (97)
T 1n7e_A           45 RTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD   91 (97)
T ss_dssp             HHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred             HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            34569999999999999999999999999999888899999988654

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=97.70  E-value=4e-05  Score=65.84  Aligned_cols=61  Identities=23%  Similarity=0.256  Sum_probs=47.2

Q ss_pred             EEEeeCC-CCcceEEEeccCC-CCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        316 VELMKGA-EGLGLSIIGMGVG-ADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       316 v~l~k~~-~glG~si~g~~~g-~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      |.|.|.. .+|||+|.+...- .+......|++|..|.++++|++.| |++||    |||.++.++++
T Consensus        19 v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aG-l~~GD~I~~vng~~v~~~~~   85 (104)
T 2z17_A           19 VTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAG-LQAGDVLANINGVSTEGFTY   85 (104)
T ss_dssp             EEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCH
T ss_pred             EEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCCCH
Confidence            7788875 6799999983110 0011134699999999999999999 99999    89999987665

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=97.68  E-value=4.1e-05  Score=63.86  Aligned_cols=43  Identities=21%  Similarity=0.439  Sum_probs=40.4

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||.++.+++|+++..+|+..+..|.|+|.|..
T Consensus        45 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~   87 (90)
T 2he4_A           45 GLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPS   87 (90)
T ss_dssp             TCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccC
Confidence            4999999999999999999999999999998899999999864

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=97.68  E-value=5.3e-05  Score=72.82  Aligned_cols=91  Identities=12%  Similarity=0.064  Sum_probs=61.6

Q ss_pred             CceEEEEEeCCCChh-hhhhHHHHHHHHhhc-----CCceEEEecCCC---ch------------------------hch
Q psy12938        498 HITVIAHLSSPSLPA-CRALNSSLAELSRSH-----TNVKFVSVPLGC---VG------------------------DHF  544 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~-C~~m~~~l~~LA~~~-----~~vkF~ki~~~~---~~------------------------d~~  544 (612)
                      +.+|||+||++||++ |....+.|.++.+++     .++.|+.|..+.   .+                        ..+
T Consensus        41 Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~~~  120 (200)
T 2b7k_A           41 GKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNA  120 (200)
T ss_dssp             TSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHHHHHH
T ss_pred             CCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHHHHHH
Confidence            458999999999997 999999999976655     268888887652   00                        124


Q ss_pred             hhhCCCC-CCc----------------EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        545 SATFKTS-GLP----------------AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       545 ~~~~~i~-~lP----------------tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +..|.+. ..|                ++|+.++|+++..+.|..   ..+-..+.|+.+|...
T Consensus       121 ~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~---~~~~~~~~i~~~l~~l  181 (200)
T 2b7k_A          121 CKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNY---DEKTGVDKIVEHVKSY  181 (200)
T ss_dssp             HHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTC---CTTHHHHHHHHHHHHC
T ss_pred             HHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCC---CHHHHHHHHHHHHHHh
Confidence            5667776 444                477889999999876532   1223346677777653

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.68  E-value=7.8e-05  Score=63.24  Aligned_cols=46  Identities=15%  Similarity=0.310  Sum_probs=41.4

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~   97 (612)
                      .++|++||+|++|||+++.+++|++++.+|+..  +..|+|+|.|...
T Consensus        45 ~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           45 CPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSG   92 (96)
T ss_dssp             STTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred             cCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence            458999999999999999999999999999984  6789999998643

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=97.68  E-value=5.6e-05  Score=62.53  Aligned_cols=42  Identities=26%  Similarity=0.429  Sum_probs=39.4

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEee
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR   94 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R   94 (612)
                      ++|++||+|++|||+++.++++.+++.+++.+++.++|+|.+
T Consensus        45 agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~~   86 (87)
T 4e34_A           45 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIEFEVVY   86 (87)
T ss_dssp             SCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            579999999999999999999999999999999999998864

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=97.67  E-value=9.8e-05  Score=63.05  Aligned_cols=49  Identities=22%  Similarity=0.386  Sum_probs=43.9

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +...|.|++||+|++|||.++.++++.+++.+++.++..|.|+|.|...
T Consensus        47 A~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   95 (102)
T 2i1n_A           47 AAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAGPVVRLVVRRRQP   95 (102)
T ss_dssp             HHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECC
T ss_pred             HHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            3345569999999999999999999999999999999999999998755

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=97.66  E-value=8.2e-05  Score=64.07  Aligned_cols=49  Identities=35%  Similarity=0.558  Sum_probs=43.7

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-..|+|++||+|++|||+++.++++.+++.+++.++..|.|+|.|...
T Consensus        51 A~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   99 (106)
T 3axa_A           51 ADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQGA   99 (106)
T ss_dssp             HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCS
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            3445569999999999999999999999999999999999999998644

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=97.66  E-value=2e-05  Score=70.42  Aligned_cols=59  Identities=22%  Similarity=0.400  Sum_probs=49.6

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++++|.|.|+. .||||++.+   ..    +..|++|..|.+||+|++.|-|++||    |||..+.++++
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~---~~----~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~   71 (127)
T 1b8q_A            8 NVISVRLFKRKVGGLGFLVKE---RV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSY   71 (127)
T ss_dssp             CSEEEEEECTTTSCCSCCEEE---CT----TSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCH
T ss_pred             ceEEEEEEeCCCCcEeEEEEe---cC----CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCH
Confidence            45679999987 899999998   32    23589999999999999999559999    89999988544

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.66  E-value=5.1e-05  Score=65.14  Aligned_cols=46  Identities=24%  Similarity=0.458  Sum_probs=41.9

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~   97 (612)
                      .|+|++||+|++|||+++.++++++++.+|+.+  +..|+|+|.|...
T Consensus        50 aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   97 (103)
T 1uep_A           50 DGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             GTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence            456999999999999999999999999999987  7899999998754

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=97.66  E-value=5.4e-05  Score=66.11  Aligned_cols=55  Identities=27%  Similarity=0.453  Sum_probs=45.6

Q ss_pred             EEE-eeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        316 VEL-MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       316 v~l-~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      |.+ .++..||||+|.+   +.+   ...|++|..|.++++|++.| |++||    |||..+.++.+
T Consensus        19 v~~~~~~~~~lG~~l~~---~~~---~~~gv~V~~V~~~s~A~~aG-L~~GD~Il~vng~~v~~~~~   78 (114)
T 1x5n_A           19 VFISLVGSRGLGCSISS---GPI---QKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDH   78 (114)
T ss_dssp             EEECCCSSCCCCEEEEE---CCS---SSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCT
T ss_pred             EEEEEcCCCceeEEEee---cCC---CCCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            555 4456899999999   443   34589999999999999999 99999    89999988654

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=97.66  E-value=7.6e-05  Score=66.38  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=43.5

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-..|+|++||+|++|||.++.+++|++++.+|+.+++.|+|+|.|...
T Consensus        58 A~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  106 (125)
T 3hpk_A           58 AALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTIHYNKLQA  106 (125)
T ss_dssp             HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEECS
T ss_pred             HHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            3445569999999999999999999999999999999999999998543

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=97.66  E-value=9.6e-05  Score=62.24  Aligned_cols=50  Identities=24%  Similarity=0.338  Sum_probs=44.2

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++...|.|++||+|++|||.++.++++.+++.+++.++..++|+|.|...
T Consensus        41 pA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   90 (95)
T 2vwr_A           41 LAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGK   90 (95)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEEESC
T ss_pred             hHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEcCCc
Confidence            34445569999999999999999999999999999999999999998654

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=97.66  E-value=5.3e-05  Score=82.43  Aligned_cols=92  Identities=12%  Similarity=0.257  Sum_probs=68.3

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHh--cCCCeEEEEEeecCCCCc--------h-------------------------
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLR--NTSGLVRFLIGREKDPVN--------S-------------------------   45 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk--~~~~~v~l~v~r~~~~~~--------~-------------------------   45 (612)
                      +||.|++|||..+.+.  .+...+|.  ..+..|.|+|.|+.....        .                         
T Consensus       302 ~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~~~~~~~~~~~~~~~~G~~l~~~~~~~  379 (451)
T 3pv2_A          302 AGDIITQINDTKITQA--TQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDIKSHEQKLQSNNPFLYGLALRAFEQES  379 (451)
T ss_dssp             TTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCHHHHHHHHHHHSTTTTTEEEEEEEEEC
T ss_pred             CCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccCCccccccccccccccccccccCChhH
Confidence            5999999999999876  44555554  467899999988731100        0                         


Q ss_pred             ---------hhHHhhhc------ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         46 ---------EVAQLIRQ------SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        46 ---------~i~~i~~G------~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                               .|..+..|      +|++||+|++|||+.+.  +.++...+|+..+..+.|+|.|..
T Consensus       380 ~~~~~~~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~--~~~~~~~~l~~~~~~v~l~v~R~g  443 (451)
T 3pv2_A          380 PPHGNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVT--DVKSLQTIAQEKKKELLVQVLRGP  443 (451)
T ss_dssp             TTSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECC--SHHHHHHHTTSSCSCEEEEEEETT
T ss_pred             hcccCCCceEEEEECCCCHHHHcCCCCCCEEEEECCEECC--CHHHHHHHHhcCCCeEEEEEEECC
Confidence                     01111112      69999999999999998  568999999988889999998853

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=97.66  E-value=2.6e-05  Score=76.48  Aligned_cols=58  Identities=19%  Similarity=0.362  Sum_probs=50.0

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ....|.|.|+..||||.|.+   +.    +..|+||..|.+|++|++.| |+.||    |||..+.++++
T Consensus         9 ~~r~v~l~k~~~glG~~l~~---~~----~~~gv~V~~V~~gSpA~~aG-L~~GD~Il~VNG~~V~~~s~   70 (216)
T 2krg_A            9 RPRLCTMKKGPSGYGFNLHS---DK----SKPGQFIRSVDPDSPAEASG-LRAQDRIVEVNGVCMEGKQH   70 (216)
T ss_dssp             CCEEEEEECCSSSSCEEECC---CS----SSCSCBEEEECTTSHHHHHT-CCTTCBCCEETTEECTTCCT
T ss_pred             ceEEEEEEeCCCCceEEEEe---cC----CCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            44568999999999999988   33    23489999999999999999 99999    89999997665

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.65  E-value=6.8e-05  Score=62.78  Aligned_cols=46  Identities=26%  Similarity=0.445  Sum_probs=41.7

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ..|+|++||+|++|||+++.++++.+++.+++..++.+.|+|.|..
T Consensus        45 ~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~~   90 (93)
T 2dkr_A           45 RHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSVKLVVRSGP   90 (93)
T ss_dssp             HHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEEEEEECCCC
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEeCC
Confidence            3456999999999999999999999999999998889999998864

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=97.65  E-value=7.5e-05  Score=69.19  Aligned_cols=88  Identities=10%  Similarity=0.133  Sum_probs=63.2

Q ss_pred             CceEEEEEeCCCCh-hhhhhHHHHHHHHhhcC----CceEEEecCCC---chh------------------------chh
Q psy12938        498 HITVIAHLSSPSLP-ACRALNSSLAELSRSHT----NVKFVSVPLGC---VGD------------------------HFS  545 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~-~C~~m~~~l~~LA~~~~----~vkF~ki~~~~---~~d------------------------~~~  545 (612)
                      +.+|||+||++||+ .|....+.|.++.++|.    ++.|+.|..+.   .++                        .+.
T Consensus        33 gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~  112 (174)
T 1xzo_A           33 GEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEI  112 (174)
T ss_dssp             TCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHHH
T ss_pred             CCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHHH
Confidence            45899999999999 99999999999998875    39999987651   100                        000


Q ss_pred             hh----------------CCCCCCcE-EEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        546 AT----------------FKTSGLPA-MLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       546 ~~----------------~~i~~lPt-llvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ..                |.+...|+ +|+-++|+++..+.|...     ...++|+..|.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~-----~~~~~l~~~l~~  169 (174)
T 1xzo_A          113 EEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVEN-----TPYDDIISDVKS  169 (174)
T ss_dssp             HHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSS-----CCHHHHHHHHHH
T ss_pred             HHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCC-----CCHHHHHHHHHH
Confidence            11                24567887 555599999999988642     235777777764

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=97.65  E-value=6.7e-05  Score=63.99  Aligned_cols=47  Identities=19%  Similarity=0.391  Sum_probs=41.5

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +-..|+|++||+|++|||.++.++++++++.+|+..++.|+|+|.+.
T Consensus        49 A~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~V~~~   95 (97)
T 2ejy_A           49 IHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLKVIPN   95 (97)
T ss_dssp             HHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEEEECC
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            33455699999999999999999999999999999888999998753

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=97.65  E-value=8.8e-05  Score=63.79  Aligned_cols=49  Identities=31%  Similarity=0.421  Sum_probs=43.8

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-..|+|++||+|++|||.++.++++.+++.+++.++..|.|+|.|...
T Consensus        46 A~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~   94 (105)
T 2awx_A           46 AHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSDFVYLKVAKPTS   94 (105)
T ss_dssp             HHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSCCSEEEEEEECCCC
T ss_pred             HHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcCCC
Confidence            3345569999999999999999999999999999999999999998754

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.65  E-value=1.9e-05  Score=76.96  Aligned_cols=82  Identities=17%  Similarity=0.208  Sum_probs=58.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEE--ecCC------------------------------------
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVS--VPLG------------------------------------  538 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~k--i~~~------------------------------------  538 (612)
                      ....+|+.|+++||+.|+.+.+.|+++++.  +++|.-  ++..                                    
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~--~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~  162 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL--GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  162 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT--TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC--CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHH
Confidence            455899999999999999999999998764  344432  2210                                    


Q ss_pred             ------CchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        539 ------CVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       539 ------~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                            .. ..+..+|.+.+.||+++ .||+   .+.|.       ...++|+.+|.+..
T Consensus       163 ~~~~v~~~-~~l~~~~gV~gTPt~vi-~nG~---~~~G~-------~~~~~l~~~l~~~~  210 (211)
T 1t3b_A          163 TPNIVKKH-YELGIQFGVRGTPSIVT-STGE---LIGGY-------LKPADLLRALEETA  210 (211)
T ss_dssp             CSSHHHHH-HHHHHHHTCCSSCEEEC-TTSC---CCCSC-------CCHHHHHHHHHHCC
T ss_pred             HHHHHHHH-HHHHHHcCCCcCCEEEE-eCCE---EecCC-------CCHHHHHHHHHhcc
Confidence                  01 13457899999999998 7886   23333       24588999987653

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=97.64  E-value=0.00012  Score=62.35  Aligned_cols=47  Identities=23%  Similarity=0.391  Sum_probs=42.4

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||..+.++++.+++.+++..+..|.|+|.|...
T Consensus        52 ~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   98 (101)
T 2jik_A           52 LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLE   98 (101)
T ss_dssp             HHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTCCSEEEEEEEEESC
T ss_pred             HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            34569999999999999999999999999999888899999998654

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=97.64  E-value=5.1e-05  Score=71.81  Aligned_cols=41  Identities=10%  Similarity=0.129  Sum_probs=36.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLG  538 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~  538 (612)
                      ..+|+|.||++||++|+...+.|.+++++|.  .++|+.|..+
T Consensus        49 Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d   91 (185)
T 2gs3_A           49 GFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCN   91 (185)
T ss_dssp             TSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECc
Confidence            4589999999999999999999999999986  4899998754

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.64  E-value=8.3e-05  Score=63.95  Aligned_cols=46  Identities=26%  Similarity=0.468  Sum_probs=42.3

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      .|.|++||+|++|||+++.++++.+++.+|+.++..|+|+|.|...
T Consensus        54 aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   99 (105)
T 1wha_A           54 AGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG   99 (105)
T ss_dssp             HSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCC
T ss_pred             cCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            4459999999999999999999999999999988999999999754

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.63  E-value=7.2e-05  Score=65.69  Aligned_cols=46  Identities=24%  Similarity=0.427  Sum_probs=42.4

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      .|+|++||+|++|||.++.++++.+++.+|+.++..|+|+|.|...
T Consensus        66 aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           66 TNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS  111 (117)
T ss_dssp             SCSCCTTCEEEEESSCBCTTCCHHHHHHHHHTSCSSEEEEECCBSC
T ss_pred             cCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            3459999999999999999999999999999999999999998765

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=97.63  E-value=6.5e-05  Score=62.69  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=39.2

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||.++.++++.+++.+|+.+.+.+.+++.|..
T Consensus        44 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~   86 (91)
T 1g9o_A           44 GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE   86 (91)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCC
Confidence            4999999999999999999999999999999888888877654

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=97.63  E-value=0.00011  Score=60.52  Aligned_cols=45  Identities=16%  Similarity=0.340  Sum_probs=39.8

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEee
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGR   94 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R   94 (612)
                      ...|.|++||+|++|||..+.+++++++..+|+..  +..+.|+|.|
T Consensus        39 ~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           39 ALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             HHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            34456999999999999999999999999999986  6789999875

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.62  E-value=1.2e-05  Score=68.88  Aligned_cols=57  Identities=19%  Similarity=0.302  Sum_probs=49.2

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ..+.+.|.|.++..||||.+.+   .       .+++|..|.++++|++.| |++||    |||..+.++++
T Consensus        13 ~~~~~~v~l~~~~~g~G~~~~~---~-------~~~~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~   73 (100)
T 1whd_A           13 NGEKLQITIRRGKDGFGFTICC---D-------SPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKC   73 (100)
T ss_dssp             CCEEEEEEEECCSSSSSCBCCC---S-------SSCBCCBCCTTSHHHHHT-CCSSCEEEEETTEECTTCCH
T ss_pred             ccceEEEEEECCCCeeeEEEeC---C-------CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            3456779999999999999977   2       469999999999999999 99999    89999987654

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.62  E-value=1.3e-05  Score=67.66  Aligned_cols=51  Identities=29%  Similarity=0.337  Sum_probs=43.5

Q ss_pred             eCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        320 KGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       320 k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++..+|||+|.+   +.+   ...|++|..|.++++|++.| |++||    |||..+.++++
T Consensus        13 ~~~~~lG~~l~~---g~~---~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   67 (94)
T 1vb7_A           13 AGPAPWGFRISG---GRD---FHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLH   67 (94)
T ss_dssp             CSSSCCSBCCEE---ETT---TTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCH
T ss_pred             cCCCCccEEEec---ccC---CCCCeEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCH
Confidence            456799999999   544   24589999999999999999 99999    89999988654

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=97.62  E-value=0.00013  Score=61.55  Aligned_cols=48  Identities=25%  Similarity=0.377  Sum_probs=43.0

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      -..|+|++||+|++|||.++.+++++++..+|+..+..+.|+|.|...
T Consensus        46 ~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   93 (97)
T 2jil_A           46 DREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEAALLIEYDVS   93 (97)
T ss_dssp             HHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEEEECC
T ss_pred             HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            334569999999999999999999999999999988999999998654

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=97.61  E-value=9.3e-05  Score=66.30  Aligned_cols=49  Identities=14%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~   97 (612)
                      +...|+|++||+|++|||+++.+++|.+++.+|+.+  +..|+|+|.|...
T Consensus        56 A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           56 AALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYP  106 (129)
T ss_dssp             HHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            334456999999999999999999999999999987  6789999998754

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=97.61  E-value=0.00021  Score=63.48  Aligned_cols=49  Identities=27%  Similarity=0.373  Sum_probs=43.2

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-..|+|++||+|++|||.++.++++++++.+|+..++.|.|+|.|...
T Consensus        72 A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  120 (123)
T 2iwq_A           72 AGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  120 (123)
T ss_dssp             HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEECCCC
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            3345559999999999999999999999999999988899999988643

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.60  E-value=8.2e-05  Score=63.01  Aligned_cols=44  Identities=20%  Similarity=0.286  Sum_probs=41.9

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ++|++||+|++|||+.+.++++.+++.+++..+..|.|+|.|..
T Consensus        46 agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   89 (96)
T 2edv_A           46 GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSITVVRCT   89 (96)
T ss_dssp             TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred             hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            58999999999999999999999999999999999999999976

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=97.59  E-value=0.00012  Score=64.13  Aligned_cols=47  Identities=28%  Similarity=0.438  Sum_probs=42.3

Q ss_pred             hhcccCCCCEEEEECCeecC-CCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLV-GVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~-~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||.++. ++++.+++.+|+.++..|+|+|.|...
T Consensus        64 ~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~~~~v~l~v~R~~~  111 (117)
T 2o2t_A           64 RDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSL  111 (117)
T ss_dssp             HHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHCCSEEEEEEESSCC
T ss_pred             HCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcCCCEEEEEEEeCCc
Confidence            34459999999999999998 999999999999999999999998643

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=97.58  E-value=6.4e-05  Score=62.61  Aligned_cols=47  Identities=19%  Similarity=0.447  Sum_probs=41.1

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCC--CceEEEEeec
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGRE   95 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~--~~v~l~v~R~   95 (612)
                      +-..|+|++||+|++|||.++.++++.+++.+|+.+.  +.|+|+|.|.
T Consensus        40 A~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~   88 (90)
T 2q9v_A           40 ADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT   88 (90)
T ss_dssp             HHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred             HHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence            3445569999999999999999999999999999875  4899999885

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=97.58  E-value=0.00012  Score=61.35  Aligned_cols=45  Identities=29%  Similarity=0.455  Sum_probs=41.0

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      ..|.|++||+|++|||+++.++++.+++.+++.+++.|+|+|.|.
T Consensus        48 ~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   92 (94)
T 2fe5_A           48 KDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP   92 (94)
T ss_dssp             HHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECC
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEcC
Confidence            345699999999999999999999999999999888999999875

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=97.58  E-value=0.00011  Score=65.69  Aligned_cols=47  Identities=19%  Similarity=0.284  Sum_probs=42.2

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ...|.|++||+|++|||.++.++++++++.+|+.+++.|+|+|.|..
T Consensus        79 ~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~  125 (128)
T 1nf3_C           79 QSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLIITVRPAN  125 (128)
T ss_dssp             HHHTCCCTTCEEEEETTEESTTCCHHHHHHHHHHTTTSEEEEEECCC
T ss_pred             HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            34456999999999999999999999999999999999999998753

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=97.58  E-value=0.00018  Score=60.87  Aligned_cols=49  Identities=35%  Similarity=0.413  Sum_probs=43.2

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +...|+|++||+|++|||.++.++++.+++.+++.++..|.|+|.|...
T Consensus        43 A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~   91 (98)
T 2opg_A           43 ACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRVRLTLYRDEA   91 (98)
T ss_dssp             HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEECSS
T ss_pred             HHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcCCC
Confidence            3344569999999999999999999999999999988999999998654

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=97.57  E-value=0.00015  Score=61.94  Aligned_cols=49  Identities=27%  Similarity=0.373  Sum_probs=43.2

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-..|.|++||+|++|||.++.++++.++..+|+..++.++|+|.|...
T Consensus        52 A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~  100 (103)
T 2fcf_A           52 AGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS  100 (103)
T ss_dssp             HHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCC
Confidence            3445559999999999999999999999999999988899999998643

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.56  E-value=9e-05  Score=64.03  Aligned_cols=47  Identities=30%  Similarity=0.504  Sum_probs=42.8

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||.++.++++.+++.+++.++..|+|+|.|...
T Consensus        57 ~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~  103 (108)
T 1q7x_A           57 SDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQS  103 (108)
T ss_dssp             HHTCCCSSCEEEEETTEECBSCTTSHHHHHHHHTTSEEEEEEECCCC
T ss_pred             HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            34569999999999999999999999999999999999999998654

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.56  E-value=0.0001  Score=65.54  Aligned_cols=47  Identities=17%  Similarity=0.482  Sum_probs=42.6

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||+++.++++.+++.+++.++..|.|+|.|...
T Consensus        66 ~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~~  112 (124)
T 2daz_A           66 ADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLVFIRNED  112 (124)
T ss_dssp             HHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSEEEEEEEECTT
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            34569999999999999999999999999999998999999998643

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=97.56  E-value=6.6e-05  Score=66.93  Aligned_cols=52  Identities=27%  Similarity=0.535  Sum_probs=43.1

Q ss_pred             EEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       316 v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.+.+ ..+|||++.+   +.     +.|++|..|.||++|++.| |++||    |||..+.++++
T Consensus        33 ~~~~~-~~~lG~~l~~---~~-----~~gv~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~   88 (124)
T 3tsv_A           33 VKFRK-GDSVGLRLAG---GN-----DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIR   88 (124)
T ss_dssp             EEEEC-SSCCCEEEEE---CT-----TSCEEEEEECTTCHHHHTT-CCTTEEEEEETTEECSSCCH
T ss_pred             EEcCC-CCceeEEEec---CC-----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            33444 4689999998   33     3589999999999999999 99999    89999988754

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.55  E-value=0.00015  Score=64.28  Aligned_cols=48  Identities=13%  Similarity=0.230  Sum_probs=42.3

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecCC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREKD   97 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~~   97 (612)
                      ...|.|++||+|++|||+.+.++++++++.+|+.  .+..|+|+|.|...
T Consensus        58 ~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  107 (123)
T 1ueq_A           58 AQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             HHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred             HHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            3445699999999999999999999999999998  46899999999754

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=97.55  E-value=0.00012  Score=59.89  Aligned_cols=42  Identities=21%  Similarity=0.410  Sum_probs=39.5

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||..+.+++|++++.+|+..+..++|+|.|.
T Consensus        40 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   81 (83)
T 2kv8_A           40 GLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVIAEG   81 (83)
T ss_dssp             TCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEEECC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEcC
Confidence            599999999999999999999999999998888899999885

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.55  E-value=0.00015  Score=61.84  Aligned_cols=45  Identities=18%  Similarity=0.236  Sum_probs=41.3

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP   98 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~   98 (612)
                      +|++||+|++|||+.+.++++.+++.+|+..++.|.|+|.|...+
T Consensus        53 GL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~   97 (100)
T 1whd_A           53 GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGP   97 (100)
T ss_dssp             TCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEEEEEECCSS
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            599999999999999999999999999999888899999987543

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=97.54  E-value=0.00014  Score=60.84  Aligned_cols=44  Identities=16%  Similarity=0.163  Sum_probs=40.5

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|+.||+|++|||..+.++++.++..+|+..++.+.|+|.|..+
T Consensus        41 Gl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   84 (91)
T 2f5y_A           41 GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVP   84 (91)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEECC-
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            49999999999999999999999999999988899999998754

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.54  E-value=5.2e-05  Score=80.97  Aligned_cols=53  Identities=28%  Similarity=0.562  Sum_probs=45.3

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      +..|.+.|+. ||||+|.|   |.     +.||||..|.+||+|++.| |++||    |||.++.++
T Consensus        10 ~~~v~~~k~~-~lG~~i~g---g~-----~~gi~V~~V~~gspA~~aG-L~~GD~Il~VnG~~v~~~   66 (391)
T 3tsz_A           10 MKLVKFRKGD-SVGLRLAG---GN-----DVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNI   66 (391)
T ss_dssp             EEEEEEECCS-SCCEEEEE---ET-----TTEEEEEEECTTCHHHHTT-CCTTEEEEEETTEECTTC
T ss_pred             cEEEEeecCC-ceeEEEEe---cC-----CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCC
Confidence            4457777876 79999999   43     3589999999999999999 99999    899999764

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.54  E-value=0.00017  Score=61.82  Aligned_cols=47  Identities=23%  Similarity=0.369  Sum_probs=42.0

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|.|++||+|++|||+.+.++++.+++.+++.++..|.|+|.|...
T Consensus        53 ~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~g~   99 (104)
T 2djt_A           53 RCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGPQLHLVIRRPLS   99 (104)
T ss_dssp             HHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCSEEEEEECCCCC
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            34459999999999999999999999999999988999999988644

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.54  E-value=8.3e-05  Score=65.33  Aligned_cols=45  Identities=24%  Similarity=0.477  Sum_probs=42.2

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++|++||+|++|||+++.++++.+++.+|+.++..|.|+|.|...
T Consensus        61 ~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~  105 (117)
T 2csj_A           61 GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRK  105 (117)
T ss_dssp             HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEEEE
T ss_pred             ccCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEECCc
Confidence            579999999999999999999999999999999999999998654

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=97.54  E-value=6.3e-05  Score=65.79  Aligned_cols=58  Identities=16%  Similarity=0.180  Sum_probs=47.9

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +.+++.|.+.. .+|||+|.+   +.    +..|++|..|.+||+|++.| |++||    |||.++.++++
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~---~~----~~~g~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   75 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRI---EK----DTDGHLIRVIEEGSPAEKAG-LLDGDRVLRINGVFVDKEEH   75 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEEC---CT----TCCSCEEECCCTTCTTGGGT-CCTTCEEEEESSSBCSSSCH
T ss_pred             CCEEEEEeCCCCCcccEEEEE---ec----CCCCeEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            44668888874 789999987   32    23589999999999999999 99999    89999988654

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.54  E-value=0.00017  Score=63.04  Aligned_cols=47  Identities=34%  Similarity=0.451  Sum_probs=42.4

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||+.+.++++.+++.+|+..+..|.|+|.|...
T Consensus        58 ~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~  104 (116)
T 2dm8_A           58 RDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKVRLVVYRDEA  104 (116)
T ss_dssp             HHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEEEEEEECCSS
T ss_pred             hCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCc
Confidence            34569999999999999999999999999999988999999998654

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=97.53  E-value=0.00017  Score=60.97  Aligned_cols=45  Identities=18%  Similarity=0.316  Sum_probs=41.3

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      ..|.|++||+|++|||+.+.++++.+++.+|+..+..++|+|.|.
T Consensus        52 ~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~   96 (98)
T 1ihj_A           52 LCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTF   96 (98)
T ss_dssp             HHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCeEEEEEEeC
Confidence            344599999999999999999999999999999889999999985

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=97.53  E-value=9.1e-05  Score=63.73  Aligned_cols=42  Identities=14%  Similarity=0.256  Sum_probs=39.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||.++.+++|.+++.+|+.++..|+|+|.|.
T Consensus        43 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~   84 (106)
T 3ngh_A           43 GLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLVLDG   84 (106)
T ss_dssp             TCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEEECH
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEEC
Confidence            599999999999999999999999999999999999999875

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=97.52  E-value=0.00013  Score=65.77  Aligned_cols=44  Identities=20%  Similarity=0.340  Sum_probs=41.2

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|++||+|++|||+++.++++.+++.+|+.++..|.|+|.|...
T Consensus        82 GL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~~~~~  125 (132)
T 3l4f_D           82 GLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR  125 (132)
T ss_dssp             TCCTTCEEEEESSSBCTTSCHHHHHHHHHHTTTEEEEEEECCCC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            49999999999999999999999999999999999999998654

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=0.00015  Score=60.76  Aligned_cols=46  Identities=33%  Similarity=0.367  Sum_probs=41.2

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +-..|+|++||+|++|||+++ +.+++++..+|+..++.|+|+|.|.
T Consensus        42 A~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~v~~~   87 (91)
T 2e7k_A           42 VAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILKILSG   87 (91)
T ss_dssp             HHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEEEECC
T ss_pred             HHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            334467999999999999999 9999999999999889999999874

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.51  E-value=0.00014  Score=62.12  Aligned_cols=47  Identities=30%  Similarity=0.465  Sum_probs=42.1

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|.|++||+|++|||+++.++++.+++.+++..+..|.|+|.|...
T Consensus        51 ~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   97 (103)
T 1wfv_A           51 RNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG   97 (103)
T ss_dssp             HHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTC
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            34559999999999999999999999999999888999999998644

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.51  E-value=0.00016  Score=62.68  Aligned_cols=48  Identities=29%  Similarity=0.518  Sum_probs=42.8

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +...|+|++||+|++|||+++.++++.+++.+++..+..|+|+|.|..
T Consensus        49 A~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   96 (110)
T 1um1_A           49 AAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSD   96 (110)
T ss_dssp             HHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            334556999999999999999999999999999999999999999853

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=97.51  E-value=0.00018  Score=62.70  Aligned_cols=45  Identities=20%  Similarity=0.454  Sum_probs=41.0

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      ..|+|++||+|++|||.++.++++.+++.+++.++..|.|+|.|.
T Consensus        64 ~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~  108 (112)
T 2r4h_A           64 RSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVRLFLKRG  108 (112)
T ss_dssp             HTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECC
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            344599999999999999999999999999999889999999875

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.50  E-value=0.00013  Score=64.32  Aligned_cols=47  Identities=23%  Similarity=0.379  Sum_probs=42.5

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||+++.++++.+++.+++.++..|+|+|.|...
T Consensus        62 ~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~~  108 (120)
T 2eno_A           62 LDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQ  108 (120)
T ss_dssp             HSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHHCSEEEEEEEEEEE
T ss_pred             HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            34569999999999999999999999999999888899999998654

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.50  E-value=0.00011  Score=63.82  Aligned_cols=46  Identities=37%  Similarity=0.609  Sum_probs=41.8

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      .|+|++||+|++|||+.+.++++.+++.+|+.++..|.|+|.|...
T Consensus        54 aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~   99 (111)
T 2dlu_A           54 DGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVRMLVARDPA   99 (111)
T ss_dssp             HTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEEEEEEESCT
T ss_pred             cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            4569999999999999999999999999999888999999998644

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=97.49  E-value=0.00011  Score=63.24  Aligned_cols=44  Identities=14%  Similarity=0.316  Sum_probs=39.6

Q ss_pred             hhc-ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCC----ceEEEEee
Q psy12938         51 IRQ-SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG----LVRFLIGR   94 (612)
Q Consensus        51 ~~G-~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~----~v~l~v~R   94 (612)
                      ..| +|++||+|++|||.++.++++.+++.+|+.+..    .|+|+|.|
T Consensus        58 ~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r  106 (107)
T 3nfk_A           58 LCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRP  106 (107)
T ss_dssp             HSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEEC
T ss_pred             HcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEEc
Confidence            345 499999999999999999999999999998865    99999987

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.48  E-value=6.1e-05  Score=66.99  Aligned_cols=59  Identities=29%  Similarity=0.504  Sum_probs=46.3

Q ss_pred             EEEEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        313 LLGVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       313 ~~~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      ...+.+.+..  .+|||++.+   ..+.. ...|++|..|.++++|++.|+|++||    |||..+...
T Consensus        20 ~~~~~~~~~~~~~~lG~~~~~---~~~~~-~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~   84 (124)
T 1wh1_A           20 LEEVDLYRMNSQDKLGLTVCY---RTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR   84 (124)
T ss_dssp             ECCBCCCCSSTTCCCCEEEEC---CCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSH
T ss_pred             EEEEEEEecCCCCcccEEEEe---cCCCC-CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCH
Confidence            3346676665  489999998   33221 24699999999999999999999999    899998763

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=97.48  E-value=0.00017  Score=60.67  Aligned_cols=43  Identities=33%  Similarity=0.482  Sum_probs=40.6

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||+++.++++.+++.+++.++..+.|+|.|..
T Consensus        51 gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~~   93 (95)
T 1mfg_A           51 LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV   93 (95)
T ss_dssp             TCCTTCEEEEETTEECTTCBHHHHHHHHHHCCSEEEEEEEEEC
T ss_pred             CCCCCCEEEEECCEEcCCCCHHHHHHHhhcCCCeEEEEEEeCC
Confidence            6999999999999999999999999999999999999999864

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=97.48  E-value=0.00018  Score=61.46  Aligned_cols=43  Identities=33%  Similarity=0.482  Sum_probs=40.6

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||.++.++++.+++.+++.++..++|+|.|..
T Consensus        59 gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           59 LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             SCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEECCC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHhhcCCCeEEEEEEecC
Confidence            6999999999999999999999999999999999999999863

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.47  E-value=5.2e-05  Score=65.95  Aligned_cols=48  Identities=25%  Similarity=0.340  Sum_probs=43.2

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ...|+|++||+|++|||+++.++++.+++.+|+.++..|+|+|.|...
T Consensus        58 ~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  105 (111)
T 1uju_A           58 GRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCC
T ss_pred             HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            344569999999999999999999999999999999999999998654

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=97.47  E-value=0.00015  Score=62.54  Aligned_cols=48  Identities=31%  Similarity=0.464  Sum_probs=42.5

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      -..|+|++||+|++|||.++.++++.+++.+|+..+..|.|+|.|...
T Consensus        58 ~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~l~v~R~~~  105 (108)
T 2jre_A           58 ALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLLLIRRLP  105 (108)
T ss_dssp             HHHSSCCSSEEEEEETTEECTTSCHHHHHHHHHHHCSEEEEEEEECCC
T ss_pred             HHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            334569999999999999999999999999999888899999988643

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.47  E-value=7.3e-05  Score=62.23  Aligned_cols=82  Identities=18%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      .|+.|+.+||+.|+.+...|+++     .+.|..++.+..+   .++.+.++...+|++  |.||+.++.+-.+....-+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l--~~~g~~i~g~~~i~~~~~~   79 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK-----GAEFNEIDASATPELRAEMQERSGRNTFPQI--FIGSVHVGGCDDLYALEDE   79 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT-----TCCCEEEESTTSHHHHHHHHHHHTSSCCCEE--EETTEEEESHHHHHHHHTT
T ss_pred             cEEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEcCHHHHHHHHHc
Confidence            46779999999999999998875     4566666665432   133446788999975  6699866533222111111


Q ss_pred             CCCHHHHHHHHHHCCcc
Q psy12938        578 GYFVEDVEAFLVEAGLL  594 (612)
Q Consensus       578 ~~~~~~lE~~L~~~g~l  594 (612)
                          ..|+.+|. .|+|
T Consensus        80 ----~~l~~~l~-~g~~   91 (92)
T 2khp_A           80 ----GKLDSLLK-TGKL   91 (92)
T ss_dssp             ----TCHHHHHH-HSSC
T ss_pred             ----CCHHHHHh-ccCc
Confidence                23666666 5654

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=97.46  E-value=0.00019  Score=69.85  Aligned_cols=92  Identities=21%  Similarity=0.243  Sum_probs=63.2

Q ss_pred             CC-CeEEEECCeecCCCCHHHHHHHH-hcCCCeEEEEEeecCCCC---------c---h---------------------
Q psy12938          1 VN-DQIIEVDGKSLVGVTQEYAASVL-RNTSGLVRFLIGREKDPV---------N---S---------------------   45 (612)
Q Consensus         1 ~g-D~Il~VNg~~l~~~th~~av~~L-k~~~~~v~l~v~r~~~~~---------~---~---------------------   45 (612)
                      +| |.|++|||..+.+.++... .++ ...+..+.|+|.|.....         .   .                     
T Consensus        36 ~G~D~I~~ing~~v~~~~~~~~-~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~~~~~lGi~~~~~~~~~~~~~Gv  114 (209)
T 3rle_A           36 PFFDFIVSINGSRLNKDNDTLK-DLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGGQGLLGVSIRFCSFDGANENVW  114 (209)
T ss_dssp             TTTEEEEEETTEECCSSSSHHH-HHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSSSSSSSCEEEEEEECTTGGGSCE
T ss_pred             cCCeEEEEECCEECcCHHHHHH-HHHhcCCCCEEEEEEEecCCceEEEEEEcccccccccCccceEEeecChhHccccce
Confidence            46 9999999999998776443 333 345789999998752110         0   0                     


Q ss_pred             hhHHhhhc------ccCC-CCEEEEECCeecCCCCHHHHHHHHHhC-CCceEEEEeecC
Q psy12938         46 EVAQLIRQ------SLQV-NDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREK   96 (612)
Q Consensus        46 ~i~~i~~G------~L~~-GD~il~VNg~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~~   96 (612)
                      .|..+..|      +|+. ||.|++|||. +.  +.++...+|+.. +..|.|+|.|..
T Consensus       115 ~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~--~~~~l~~~l~~~~g~~v~l~v~r~~  170 (209)
T 3rle_A          115 HVLEVESNSPAALAGLRPHSDYIIGADTV-MN--ESEDLFSLIETHEAKPLKLYVYNTD  170 (209)
T ss_dssp             EEEEECTTSHHHHHTCCTTTEEEEEESSC-CC--SSSCHHHHHHHTTTSCEEEEEEETT
T ss_pred             EEEEeCCCChHHHCCCCCCCCEEEECCCE-eC--CHHHHHHHHHhCCCCeEEEEEEECC
Confidence            01122222      6999 9999999997 54  556677777764 678999998853

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=97.46  E-value=0.00017  Score=59.27  Aligned_cols=42  Identities=17%  Similarity=0.250  Sum_probs=39.6

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||..+.++++.+++.+++..+..+.|+|.|.
T Consensus        42 Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~R~   83 (85)
T 1rgw_A           42 QLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKS   83 (85)
T ss_dssp             SCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESC
T ss_pred             CCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEEEeC
Confidence            699999999999999999999999999998888899999875

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=97.46  E-value=0.00028  Score=64.73  Aligned_cols=89  Identities=15%  Similarity=0.143  Sum_probs=64.3

Q ss_pred             CceEEEEEeC-CCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch--------------------hchhhhCCCCC--
Q psy12938        498 HITVIAHLSS-PSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG--------------------DHFSATFKTSG--  552 (612)
Q Consensus       498 ~~~Vvvhfy~-~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~--------------------d~~~~~~~i~~--  552 (612)
                      +.+||+.||+ .||+.|....+.|.++.++|.  +++|+-|..+...                    ..+...|.+..  
T Consensus        35 gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~  114 (163)
T 3gkn_A           35 GHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEK  114 (163)
T ss_dssp             TSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHTTCEEEE
T ss_pred             CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHhCCcccc
Confidence            3489999998 999999999999999999884  5888888765210                    13446677766  


Q ss_pred             ----------CcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        553 ----------LPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       553 ----------lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                                .|+++++ ++|+++..+.+...    .-..+++.+.|.+
T Consensus       115 ~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~----~~~~~~il~~l~~  159 (163)
T 3gkn_A          115 NMYGKQVLGIERSTFLLSPEGQVVQAWRKVKV----AGHADAVLAALKA  159 (163)
T ss_dssp             EETTEEEEEECCEEEEECTTSCEEEEECSCCS----TTHHHHHHHHHHH
T ss_pred             ccccccccCcceEEEEECCCCeEEEEEcCCCc----ccCHHHHHHHHHH
Confidence                      8998888 79999997743321    2234555555543

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.46  E-value=7.2e-05  Score=65.89  Aligned_cols=44  Identities=16%  Similarity=0.381  Sum_probs=40.0

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCC----CceEEEEeecC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS----GLVRFLIGREK   96 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~----~~v~l~v~R~~   96 (612)
                      |+|++||+|++|||+++.+++|.+++.+++.++    ..|.|+|.|..
T Consensus        59 gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~  106 (119)
T 2cs5_A           59 PRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNA  106 (119)
T ss_dssp             SCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECCC
T ss_pred             cCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEEccc
Confidence            579999999999999999999999999999875    48999998864

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=97.45  E-value=0.00018  Score=59.71  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=40.1

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||+.+.++++.++..+++..+..+.|+|.|..
T Consensus        44 Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~~   86 (89)
T 2q3g_A           44 GVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLGLSRAI   86 (89)
T ss_dssp             TCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEEEEEEC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEeCC
Confidence            4999999999999999999999999999988889999998864

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=97.45  E-value=0.00026  Score=57.25  Aligned_cols=45  Identities=13%  Similarity=0.376  Sum_probs=40.0

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      ..|.|++||+|++|||..+.++++.++..+|+...+.+.|+|.|.
T Consensus        36 ~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           36 RDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             HHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            345599999999999999999999999999998888999999874

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=97.45  E-value=0.00022  Score=58.93  Aligned_cols=43  Identities=26%  Similarity=0.427  Sum_probs=40.4

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||..+.+++++++..+|+.....+.|+|.|..
T Consensus        43 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~   85 (87)
T 2pa1_A           43 DLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLDRIT   85 (87)
T ss_dssp             TCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEEECC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence            6999999999999999999999999999998899999999853

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=97.44  E-value=0.00021  Score=61.06  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=42.3

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +-..|+|++||+|++|||.++.+.++.+++.+++.++..++|+|.|.
T Consensus        48 A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~   94 (104)
T 3i4w_A           48 ADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK   94 (104)
T ss_dssp             HHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEEC
T ss_pred             HHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEC
Confidence            33445699999999999999999999999999999999999999885

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=97.44  E-value=0.00018  Score=60.12  Aligned_cols=43  Identities=26%  Similarity=0.369  Sum_probs=39.2

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||+++.+++++++..+|+..+..++|+|.|..
T Consensus        44 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~   86 (91)
T 2vsp_A           44 GLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK   86 (91)
T ss_dssp             TCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC--
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCC
Confidence            5999999999999999999999999999988889999999854

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=97.44  E-value=0.00019  Score=60.31  Aligned_cols=44  Identities=20%  Similarity=0.359  Sum_probs=40.5

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|++||+|++|||.++.+++|++++.+|+.+++.+.+++.|...
T Consensus        46 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~r~~~   89 (95)
T 3r68_A           46 GLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEL   89 (95)
T ss_dssp             TCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEECC-
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEECCcc
Confidence            49999999999999999999999999999999999999988643

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=97.44  E-value=0.00026  Score=59.49  Aligned_cols=46  Identities=39%  Similarity=0.512  Sum_probs=41.4

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ..|.|++||+|++|||..+.++++.+++.+++..+..|.|+|.|..
T Consensus        48 ~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r~g   93 (97)
T 2iwn_A           48 HDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQTVLLTLMRRG   93 (97)
T ss_dssp             HHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEEEEEEEEEE
T ss_pred             hCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            3456999999999999999999999999999998899999998853

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=97.43  E-value=0.00023  Score=59.27  Aligned_cols=42  Identities=12%  Similarity=0.248  Sum_probs=39.4

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||+.+.++++.+++.+++..+..+.|+|.|.
T Consensus        49 Gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   90 (91)
T 1m5z_A           49 GLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            499999999999999999999999999998889999999884

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.43  E-value=0.00011  Score=61.66  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=40.1

Q ss_pred             EEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       316 v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      +...+...+|||++.+            | +|.+|.+||+|++.| |++||    |||.++.++++
T Consensus        17 i~~~~~~~~lG~~~~~------------G-~V~~V~~~spA~~aG-L~~GD~Il~Ing~~v~~~~~   68 (90)
T 1y7n_A           17 IRRPDLRYQLGFSVQN------------G-IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPH   68 (90)
T ss_dssp             EEESSTTSCCCEEEET------------T-EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCH
T ss_pred             EEeCCCccccCeEecC------------C-EEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            4444445789999966            2 999999999999999 99999    89999987665

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=97.43  E-value=0.00023  Score=58.93  Aligned_cols=42  Identities=21%  Similarity=0.471  Sum_probs=39.5

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||..+.++++.++..+++..+..+.|+|.|.
T Consensus        44 Gl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   85 (88)
T 2uzc_A           44 NVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQRE   85 (88)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEeC
Confidence            499999999999999999999999999998888999999885

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=97.43  E-value=0.00033  Score=60.70  Aligned_cols=47  Identities=38%  Similarity=0.593  Sum_probs=41.6

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||+.+.++++++++.+|+..  +..|.|+|.|...
T Consensus        54 ~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  102 (111)
T 2koj_A           54 QDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSLLVFRQEE  102 (111)
T ss_dssp             HHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCCSSEEEEEEEECCC
T ss_pred             HCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            3456999999999999999999999999999985  6889999998654

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.42  E-value=0.00026  Score=60.76  Aligned_cols=44  Identities=18%  Similarity=0.317  Sum_probs=40.4

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP   98 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~   98 (612)
                      +|++||+|++|||+.+.++++++++.+|+. +..+.|+|.|...+
T Consensus        58 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~l~v~r~~~~  101 (104)
T 1wi2_A           58 GLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREISMRVRFFSGP  101 (104)
T ss_dssp             TCCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEEEEEECCCCS
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEEEEEEECCCC
Confidence            599999999999999999999999999998 78999999986553

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.42  E-value=0.00025  Score=67.37  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=35.7

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPL  537 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~  537 (612)
                      ....+|+.||+.||+.|+.+.+.|..|+++|+. ++|..++.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            345799999999999999999999999999984 88876654

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=97.40  E-value=0.00013  Score=73.55  Aligned_cols=45  Identities=29%  Similarity=0.406  Sum_probs=42.4

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      |+|++||+|++|||+++.+++|.+++.+|+.++..|+|+|.|...
T Consensus       120 aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~V~L~V~R~~~  164 (263)
T 1z87_A          120 EALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKE  164 (263)
T ss_dssp             TTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSCCCEEEECCSS
T ss_pred             CCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCeEEEEEEeCcc
Confidence            589999999999999999999999999999999999999998654

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=97.40  E-value=0.00021  Score=63.78  Aligned_cols=47  Identities=34%  Similarity=0.528  Sum_probs=42.6

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||.++.++++++++.+|+..+..|.|+|.|...
T Consensus        61 ~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~R~~~  107 (129)
T 2dmz_A           61 HNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNAGQVVHLTLVRRKT  107 (129)
T ss_dssp             HHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHHCCSSEEEEEEEESS
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            44569999999999999999999999999999988999999998644

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=97.40  E-value=0.00024  Score=61.49  Aligned_cols=44  Identities=20%  Similarity=0.340  Sum_probs=40.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|++||+|++|||..+.+++|.+++.+|+..+..+.|+|.|..+
T Consensus        62 Gl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~~~~~  105 (109)
T 1q3o_A           62 GLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTR  105 (109)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEEEECCC
Confidence            49999999999999999999999999999888899999998754

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.40  E-value=0.00023  Score=62.15  Aligned_cols=45  Identities=20%  Similarity=0.409  Sum_probs=41.8

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++|++||+|++|||+.+.++++++++.+|+..+..|.|+|.|...
T Consensus        60 agL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~  104 (114)
T 1uew_A           60 AKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             SSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSC
T ss_pred             CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            579999999999999999999999999999988999999998654

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=97.40  E-value=0.00014  Score=60.56  Aligned_cols=52  Identities=40%  Similarity=0.519  Sum_probs=43.2

Q ss_pred             EEEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      ++|.+.+..  ..|||.+..            |++|.+|.+||+|++.|+|++||    |||.++.++++
T Consensus         4 ~~v~~~~~~~~~~~g~~~~~------------gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~   61 (92)
T 3cyy_A            4 TKVTLVKSAKNEEYGLRLAS------------HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSL   61 (92)
T ss_dssp             EEEEEECSSTTSCCCEEEEE------------EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCH
T ss_pred             EEEEEEeCCCCCCCCEEEeC------------CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCH
Confidence            446666544  579998864            69999999999999999999999    89999987655

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=97.39  E-value=0.00019  Score=59.61  Aligned_cols=53  Identities=15%  Similarity=0.168  Sum_probs=43.0

Q ss_pred             EEEEEeeCC---CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938        314 LGVELMKGA---EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG  376 (612)
Q Consensus       314 ~~v~l~k~~---~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~  376 (612)
                      +.+.+.+.+   .+|||++..         ...|++|..|.+|++|++.| |++||    |||..+.+.+
T Consensus         5 ~~~~~~~~~~~~~~lG~~~~~---------~~~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~~   64 (90)
T 2eaq_A            5 MRISINQTPGKSLDFGFTIKW---------DIPGIFVASVEAGSPAEFSQ-LQVDDEIIAINNTKFSYND   64 (90)
T ss_dssp             EEEEEECCTTCSSCCSEEEEE---------ETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECCTTC
T ss_pred             eEEEEEecCCCCCcccEEEEe---------cCCCEEEEEECCCChHHHcC-CCCCCEEEEECCEEccCCC
Confidence            456666655   369999986         34589999999999999999 99999    8999985533

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.39  E-value=0.00022  Score=59.82  Aligned_cols=41  Identities=27%  Similarity=0.460  Sum_probs=38.6

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEee
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR   94 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R   94 (612)
                      +|++||+|++|||.++.++++.++..+|+.++..|+|+|.+
T Consensus        48 GL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~v~p   88 (90)
T 1y7n_A           48 GVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMP   88 (90)
T ss_dssp             TCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEEC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            59999999999999999999999999999988999999874

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.39  E-value=7.7e-05  Score=61.78  Aligned_cols=58  Identities=19%  Similarity=0.329  Sum_probs=45.6

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC--CchhchhhhC-CCCCCcEEEEEECCEEee
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG--CVGDHFSATF-KTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~--~~~d~~~~~~-~i~~lPtllvyk~G~~~~  566 (612)
                      .|+.|+++||+.|+.+.+.|+++.     +.|..++.+  ... ++.+.+ ++..+|+++  .||+.++
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~~-----i~~~~vdv~~~~~~-~l~~~~~~~~~vP~l~--~~g~~i~   67 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKKG-----VKYTDIDASTSLRQ-EMVQRANGRNTFPQIF--IGDYHVG   67 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHHT-----CCEEEECSCHHHHH-HHHHHHHSSCCSCEEE--ETTEECC
T ss_pred             eEEEEECCCChhHHHHHHHHHHcC-----CCcEEEECCHHHHH-HHHHHhCCCCCcCEEE--ECCEEEe
Confidence            467799999999999999999873     567777776  332 566778 999999984  5998765

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.38  E-value=0.00011  Score=62.90  Aligned_cols=44  Identities=20%  Similarity=0.387  Sum_probs=40.5

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|++||+|++|||..+.++++++++.+|+..+..|.|+|.|...
T Consensus        47 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~   90 (102)
T 2d90_A           47 GLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVLDKEA   90 (102)
T ss_dssp             TCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEEECSTTC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            59999999999999999999999999999988999999987543

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.38  E-value=0.00026  Score=61.83  Aligned_cols=46  Identities=17%  Similarity=0.330  Sum_probs=40.8

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ..|.|++||+|++|||+.+.++++++++.+|+...+.|+|+|.|..
T Consensus        63 ~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~  108 (113)
T 1va8_A           63 KSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLIPSS  108 (113)
T ss_dssp             HHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEECCC
T ss_pred             HcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            3444499999999999999999999999999998899999998754

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=97.38  E-value=7.6e-05  Score=62.09  Aligned_cols=72  Identities=11%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC---c---hhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC---V---GDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~---~---~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      |+-|+.+||+.|+.+...|+++.-.|   .++.|+...   .   ..++.+.++...+|+|++  +|+.++   |     
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~gi~~---~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~--~g~~i~---G-----   80 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKREGVDF---EVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVK--GDKHVL---G-----   80 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHHTCCC---EEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEE--TTEEEE---S-----
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCc---EEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEE--CCEEEe---C-----
Confidence            55688999999999999999985443   444554211   1   024556788999999987  886543   2     


Q ss_pred             cCCCCHHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFLV  589 (612)
Q Consensus       576 g~~~~~~~lE~~L~  589 (612)
                         |..+.|+.+|.
T Consensus        81 ---~~~~~l~~~l~   91 (92)
T 3ic4_A           81 ---YNEEKLKELIR   91 (92)
T ss_dssp             ---CCHHHHHHHHH
T ss_pred             ---CCHHHHHHHhc
Confidence               45688888874

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.37  E-value=0.00022  Score=60.83  Aligned_cols=46  Identities=15%  Similarity=0.509  Sum_probs=41.0

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|+|++||+|++|||+.+.++ +.+++.+++..+..|+|+|.|...
T Consensus        50 ~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~l~v~R~~~   95 (100)
T 2edp_A           50 LSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILKLIVRRRNS   95 (100)
T ss_dssp             HHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCEEEEEECCC
T ss_pred             HcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEEEEEEeCCC
Confidence            3457999999999999999987 899999999988999999998654

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.37  E-value=0.00038  Score=58.48  Aligned_cols=44  Identities=23%  Similarity=0.400  Sum_probs=40.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|++||+|++|||..+.++++.++..+|+.....++|+|.|...
T Consensus        47 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~g~   90 (94)
T 1vb7_A           47 DLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSG   90 (94)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCc
Confidence            69999999999999999999999999999888999999998644

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.36  E-value=9.1e-05  Score=71.43  Aligned_cols=44  Identities=14%  Similarity=0.205  Sum_probs=39.3

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHH---HHHHhhcC-CceEEEecCCCc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSL---AELSRSHT-NVKFVSVPLGCV  540 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~-~vkF~ki~~~~~  540 (612)
                      ....+||.||+.||+.|+.+.+.|   +.|+++|+ +++|.+++++..
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            345799999999999999999999   99999998 599999998753

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=97.36  E-value=0.00031  Score=59.56  Aligned_cols=43  Identities=16%  Similarity=0.318  Sum_probs=40.6

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||..+.++++.+++.+|+..+..++|+|.|..
T Consensus        51 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~   93 (99)
T 3khf_A           51 GLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTALE   93 (99)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEECSC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEECC
Confidence            4999999999999999999999999999999999999999854

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=97.36  E-value=0.00037  Score=58.03  Aligned_cols=46  Identities=13%  Similarity=0.377  Sum_probs=40.3

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ..|+|++||+|++|||..+.++++.++..+|+...+.+.|+|.|..
T Consensus        38 ~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~g   83 (92)
T 3cyy_A           38 RDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRDE   83 (92)
T ss_dssp             HSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEEC--
T ss_pred             hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEeCC
Confidence            3445999999999999999999999999999998889999998854

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.35  E-value=0.00037  Score=69.22  Aligned_cols=84  Identities=12%  Similarity=0.215  Sum_probs=60.0

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC-------------------------------------
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC-------------------------------------  539 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~-------------------------------------  539 (612)
                      ....+|+.|+++||+.|+.+.+.|..+.++ .+++|..++.--                                     
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~-g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~~~  174 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS-GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVP  174 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT-TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC-CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCCcc
Confidence            344789999999999999999999998776 367776433210                                     


Q ss_pred             ------c------hhchhhhCCCCCCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        540 ------V------GDHFSATFKTSGLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       540 ------~------~d~~~~~~~i~~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                            .      ...+..+|.+.+.||++++. +|+. ..+.|+..       .++|+.+|.
T Consensus       175 ~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~-~~~~G~~~-------~~~L~~~l~  229 (241)
T 1v58_A          175 ANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL-QQAVGLPD-------QKTLNIIMG  229 (241)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE-EEEESSCC-------HHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE-EEecCCCC-------HHHHHHHHH
Confidence                  0      01235688999999999997 5865 45666533       377777765

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=97.34  E-value=0.00031  Score=59.27  Aligned_cols=41  Identities=17%  Similarity=0.339  Sum_probs=38.7

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEee
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR   94 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R   94 (612)
                      +|++||+|++|||..+.+++++++..+|+..++.|+|+|.|
T Consensus        54 GL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~~   94 (96)
T 2ego_A           54 GLTPGDTIASVNGLNVEGIRHREIVDIIKASGNVLRLETLY   94 (96)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEE
Confidence            49999999999999999999999999999988899999975

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.34  E-value=5.1e-05  Score=65.11  Aligned_cols=54  Identities=24%  Similarity=0.303  Sum_probs=44.5

Q ss_pred             EEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       316 v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      |.+ ++..+|||++.+   +.+.   ..+++|..|.++++|++.| |++||    |||..+.++++
T Consensus         9 v~~-~~~~~lG~~l~~---g~~~---~~~~~V~~V~~~spA~~aG-L~~GD~I~~ing~~v~~~~~   66 (103)
T 1v5l_A            9 VVL-PGPAPWGFRLSG---GIDF---NQPLVITRITPGSKAAAAN-LCPGDVILAIDGFGTESMTH   66 (103)
T ss_dssp             CEE-ESSSCCSBCCEE---ETTT---TEEEECSCBCTTSTTGGGT-CCTTCBEEEETTEECSSCCH
T ss_pred             EEE-cCCCCcCEEEec---cccC---CCCeEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCH
Confidence            544 455689999998   5442   3589999999999999999 99999    89999988554

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=97.33  E-value=0.00027  Score=59.49  Aligned_cols=44  Identities=20%  Similarity=0.377  Sum_probs=40.8

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|++||+|++|||..+.+++++++..+|+..+..+.|+|.|...
T Consensus        47 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~~   90 (96)
T 2v90_A           47 GMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCVSLTVVDPEA   90 (96)
T ss_dssp             TCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEECCCT
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEECCCC
Confidence            49999999999999999999999999999988899999998644

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.33  E-value=5.1e-05  Score=66.01  Aligned_cols=62  Identities=11%  Similarity=0.162  Sum_probs=43.6

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC-----CchhchhhhCCCCCCcEEEEEECCEEeeEE
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG-----CVGDHFSATFKTSGLPAMLAYRGGEVVGNF  568 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~-----~~~d~~~~~~~i~~lPtllvyk~G~~~~~~  568 (612)
                      |+.|+.+||+.|+.+.+.|+++.-.|   .++.|+.+     ...+.+...+....+|++  |.||+.++.+
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~~i~~---~~~di~~~~~~~~~~~~~l~~~~g~~tvP~i--fi~g~~igG~   87 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRLGVQP---LVVELDQLGPQGPQLQKVLERLTGQHTVPNV--FVCGKHIGGC   87 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCC---EEEEGGGSTTHHHHHHHHHHHHHSCCSSCEE--EETTEEEESH
T ss_pred             EEEEECCCChhHHHHHHHHHHcCCCC---eEEEeecCCCChHHHHHHHHHHhCCCCcCEE--EECCEEEcCc
Confidence            55599999999999999999875444   44455432     111124444688999998  7799988744

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=97.31  E-value=0.0002  Score=64.03  Aligned_cols=45  Identities=22%  Similarity=0.227  Sum_probs=40.6

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeec
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGRE   95 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~   95 (612)
                      ..|+|++||+|++|||..+.+.++++++.+|+.  .+..|+|+|.|.
T Consensus        64 ~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           64 SDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             GCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             HcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            345699999999999999999999999999997  467899999986

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=97.31  E-value=0.00022  Score=63.59  Aligned_cols=57  Identities=30%  Similarity=0.486  Sum_probs=45.3

Q ss_pred             EEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        314 LGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       314 ~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .++.+.... .+|||++.+   +.+.   ..|++|..|.+|++|++.| |++||    |||..+.++++
T Consensus        22 ~~v~v~~~~~~~lG~~~~~---~~~~---~~gv~V~~V~~~spA~~aG-L~~GD~I~~vng~~v~~~~~   83 (128)
T 1uf1_A           22 KKVNLVLGDGRSLGLTIRG---GAEY---GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILH   83 (128)
T ss_dssp             EEEEEECCSSCCCCEEEEC---CTTT---TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCH
T ss_pred             EEEEEEECCCCccCEEEEC---cccC---CCCEEEEEECCCCHHHHCC-CCCCCEEEEECCEECCCCCH
Confidence            345554443 679999998   4332   3489999999999999999 99999    89999998765

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=97.30  E-value=0.00039  Score=57.94  Aligned_cols=44  Identities=18%  Similarity=0.339  Sum_probs=40.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|++||+|++|||..+.+.++.++..+|+..+..+.|+|.|...
T Consensus        44 Gl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~R~g~   87 (91)
T 2pkt_A           44 NLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLTVARSEH   87 (91)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEECC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            59999999999999999999999999999988999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	612
d2trcp_	217	c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [	5e-29
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-11
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	5e-09
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	9e-07
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	8e-06
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	6e-09
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	1e-05
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	2e-04
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	5e-04
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	2e-08
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	1e-05
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	2e-04
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	5e-04
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	3e-08
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	7e-06
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	1e-05
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	2e-05
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	5e-08
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-05
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-05
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	1e-04
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	6e-08
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	2e-04
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	1e-07
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	2e-05
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	0.002
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	0.004
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	2e-07
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-05
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	7e-07
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	1e-05
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	1e-06
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	4e-05
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	8e-05
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	1e-04
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	1e-06
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	3e-06
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	2e-05
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	1e-04
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-06
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-04
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	8e-04
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	0.002
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-06
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	4e-06
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	8e-05
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	5e-04
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	2e-06
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	1e-05
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	3e-06
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	2e-05
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	3e-04
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	0.001
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	7e-06
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	3e-05
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	3e-05
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	0.004
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	8e-06
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	2e-04
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	0.003
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	1e-05
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	2e-04
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	1e-05
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	4e-05
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	0.004
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	1e-05
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	8e-05
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	1e-05
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	4e-04
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	1e-05
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	2e-04
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	0.001
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	0.004
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-05
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	0.002
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	2e-05
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	3e-04
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	3e-05
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	4e-04
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-05
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	0.003
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	0.003
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	4e-05
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	4e-04
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	0.004
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	6e-05
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	2e-04
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	6e-05
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	9e-05
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	0.001
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	0.002
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	0.003
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	1e-04
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-04
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	2e-04
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	0.001
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	1e-04
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	2e-04
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	5e-04
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	0.001
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-04
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	7e-04
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	0.003
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	3e-04
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	0.004
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	3e-04
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	6e-04
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	3e-04
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	0.003
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-04
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	0.003
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	8e-04
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	0.002
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	0.002
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	0.003
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	8e-04
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	0.001
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	0.004
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	0.001
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	0.002
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	0.001
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	0.002
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	0.003
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	0.002
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	0.002
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	0.002
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	0.003
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	0.003
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	0.003
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	0.004
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	0.004
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	0.004

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  112 bits (282), Expect = 5e-29
 Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 28/210 (13%)

Query: 410 GPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSEEARKEAEM--------EA 461
           GPKGV+ DW +FK  E +        +   +++++      ++  KE           E 
Sbjct: 8   GPKGVINDWRKFKL-ESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYEL 66

Query: 462 ELKELEDDGFLLEYQKEKMKQMYDRL-----------------FLSEIDSEPRHITVIAH 504
             ++ ED+G L +Y+++ M+ M+ +L                 FL  I+ E +  T++ +
Sbjct: 67  IHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVN 126

Query: 505 LSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV 564
           +    +  C ALNSSL  L+  +  VKF  +     G      F +  LP +L Y+GGE+
Sbjct: 127 IYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG--AGDRFSSDVLPTLLVYKGGEL 184

Query: 565 VGNFVRLGEELGEGYFVEDVEAFLVEAGLL 594
           + NF+ + E+  E +F  DVE+FL E GLL
Sbjct: 185 ISNFISVAEQFAEDFFAADVESFLNEYGLL 214

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 3e-11
 Identities = 40/48 (83%), Positives = 43/48 (89%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL K  +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQ
Sbjct: 6   VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQ 53

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 37/45 (82%), Positives = 40/45 (88%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVR 408
             +GLG+SIIGMGVGADAGLEKLGIFVKT+TE GAA RDGRIQV 
Sbjct: 11  DEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVN 55

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 9e-07
 Identities = 33/42 (78%), Positives = 38/42 (90%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
          +QVNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGREK
Sbjct: 52 IQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 93

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 8e-06
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
          VNDQI+EVDG SLVGVTQ +AA+VLRNT G VRF+IGREK
Sbjct: 54 VNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 93

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 6e-09
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           T++ V L+KG +GLG SI G G+G         I++  I E GAA +DGR+Q
Sbjct: 1   TIMEVNLLKGPKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQ 51

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G +GLG SI G G+G         I++  I E GAA +DGR+Q+
Sbjct: 10  GPKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQI 52

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          LQ+ D+++ V+  +L  V  E A + L+NTS +V   + +
Sbjct: 50 LQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 89

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
          + D+++ V+  +L  V  E A + L+NTS +V   + +
Sbjct: 52 IGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAK 89

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL +G  GLG+ +I    G    L   G++++T+     AA DGR+ 
Sbjct: 12  VELERGPSGLGMGLID---GMHTHLGAPGLYIQTLLPGSPAAADGRLS 56

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
           G  GLG+ +I    G    L   G++++T+     AA DGR+ 
Sbjct: 17  GPSGLGMGLID---GMHTHLGAPGLYIQTLLPGSPAAADGRLS 56

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 28/49 (57%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
           L + D+I+EV+G SL+G+    A  ++R+    +RFL+ +       ++
Sbjct: 55  LSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKI 103

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 26/46 (56%)

Query: 2   NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
            D+I+EV+G SL+G+    A  ++R+    +RFL+ +       ++
Sbjct: 58  GDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKI 103

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L +G  GLG SI G G       +   IF+  I   GAAA+DGR++
Sbjct: 5   ITLERGNSGLGFSIAG-GTDNPHIGDDPSIFITKIIPGGAAAQDGRLR 51

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.6 bits (100), Expect = 7e-06
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          L+VND I+ V+   +  VT   A   L+    +VR  + R K P
Sbjct: 50 LRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP 93

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
           G  GLG SI G G       +   IF+  I   GAAA+DGR++
Sbjct: 10  GNSGLGFSIAG-GTDNPHIGDDPSIFITKIIPGGAAAQDGRLR 51

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 2  NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
          ND I+ V+   +  VT   A   L+    +VR  + R K P
Sbjct: 53 NDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP 93

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (116), Expect = 5e-08
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 316 VELMKGAEGLGLSIIGM--GVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL K    LG+S+  +    G +  +   GI+VK I   GAA  DGRI 
Sbjct: 8   VELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIH 57

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          +   D+++ V+G SL G T + A   LRNT  +V  L+ + + P
Sbjct: 56 IHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 99

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 364 GAEGLGLSIIGM--GVGADAGLEKLGIFVKTITEAGAAARDGRIQVR 408
               LG+S+  +    G +  +   GI+VK I   GAA  DGRI   
Sbjct: 13  TDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKG 59

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D+++ V+G SL G T + A   LRNT  +V  L+ + + P
Sbjct: 58 KGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQVP 99

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 6e-08
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 283 MNEYDRRNEDVDPVAASAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEK 342
           M + +   +     +A+++  +E    + T+  V L K + GLG S+ G   G  +    
Sbjct: 1   MPDLNSSTDSAASASAASDVSVE-STAEATVCTVTLEKMSAGLGFSLEG---GKGSLHGD 56

Query: 343 LGIFVKTITEAGAAARDGRIQ 363
             + +  I +  A+ +   +Q
Sbjct: 57  KPLTINRIFKGAASEQSETVQ 77

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
            + GLG S+ G   G  +      + +  I +  A+ +   +Q
Sbjct: 38  MSAGLGFSLEG---GKGSLHGDKPLTINRIFKGAASEQSETVQ 77

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 3/48 (6%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L +G +GLG SI+G   G  +    L I+VKT+   GAA+ DGR++
Sbjct: 6   ITLERGPDGLGFSIVG---GYGSPHGDLPIYVKTVFAKGAASEDGRLK 50

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 3/44 (6%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           G +GLG SI+G   G  +    L I+VKT+   GAA+ DGR++ 
Sbjct: 11  GPDGLGFSIVG---GYGSPHGDLPIYVKTVFAKGAASEDGRLKR 51

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
          L+  DQII V+G+SL GVT E A ++L+ T G V  ++
Sbjct: 49 LKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 86

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 17/36 (47%), Positives = 24/36 (66%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
            DQII V+G+SL GVT E A ++L+ T G V  ++
Sbjct: 51 RGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMV 86

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 316 VELMKGAEGLGLSIIGMGVGAD--AGLEKLGIFVKTITEAGAAARDGRIQ 363
           + L + +  LG +IIG     D   G    GIFV  I ++G AA++G +Q
Sbjct: 12  LVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQ 61

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 364 GAEGLGLSIIGMGVGAD--AGLEKLGIFVKTITEAGAAARDGRIQVR 408
            +  LG +IIG     D   G    GIFV  I ++G AA++G +Q+ 
Sbjct: 17  DSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIH 63

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 7e-07
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
             L+  D I+ ++G+S   +    A S +R ++  +R  + R   P
Sbjct: 45 AADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP 91

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
            D I+ ++G+S   +    A S +R ++  +R  + R   P
Sbjct: 50 PGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP 91

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 299 SAEYELEKRVEKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR 358
           S  Y       K+T    +      GLG+ I+G G        ++G ++  I   G+A +
Sbjct: 6   SGHYIFPHARIKITRDSKDHTVSGNGLGIRIVG-GKEIPGHSGEIGAYIAKILPGGSAEQ 64

Query: 359 DGRIQ 363
            G++ 
Sbjct: 65  TGKLM 69

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 4e-05
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
           L    Q++E +G  L   T E   S++   SG     +  + + 
Sbjct: 68  LMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM 111

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 358 RDGRIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
           +D  + G  GLG+ I+G G        ++G ++  I   G+A + G++ 
Sbjct: 23  KDHTVSG-NGLGIRIVG-GKEIPGHSGEIGAYIAKILPGGSAEQTGKLM 69

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 2   NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
             Q++E +G  L   T E   S++   SG     +  + + 
Sbjct: 71  GMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLNM 111

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 362 IQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVR 408
           ++   G+GLSI+       AG +KLGI+VK++ + GAA  DGR+   
Sbjct: 10  LKKQNGMGLSIVA---AKGAGQDKLGIYVKSVVKGGAADVDGRLAAG 53

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 3/45 (6%)

Query: 319 MKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           +K   G+GLSI+       AG +KLGI+VK++ + GAA  DGR+ 
Sbjct: 10  LKKQNGMGLSIVA---AKGAGQDKLGIYVKSVVKGGAADVDGRLA 51

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 17/41 (41%), Positives = 28/41 (68%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
          L   DQ++ VDG+SLVG++QE AA ++  TS +V   + ++
Sbjct: 50 LAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 90

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
            DQ++ VDG+SLVG++QE AA ++  TS +V   + ++
Sbjct: 52 AGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ 90

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 19/48 (39%), Positives = 21/48 (43%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
             L +   GLG SI G            GIFV  I E GAA R G +Q
Sbjct: 11  ACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQ 58

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 20/44 (45%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              GLG SI G            GIFV  I E GAA R G +QV
Sbjct: 16  SERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQV 59

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 56  QVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           QV D+++ ++G  +     ++A S+L   S  +  L+ RE     S
Sbjct: 58  QVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPS 103

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
           V D+++ ++G  +     ++A S+L   S  +  L+ RE     S
Sbjct: 59  VGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAGSGPS 103

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K G +  G+ I+   V      +  GIF+K I     A   GR++
Sbjct: 7   VTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLK 55

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.3 bits (102), Expect = 4e-06
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVR 408
            G +  G+ I+   V      +  GIF+K I     A   GR++V 
Sbjct: 12  TGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVG 57

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.9 bits (93), Expect = 8e-05
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          L+V D+I+ ++GK +   T++    +++     +   I  
Sbjct: 54 LKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 93

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 7/38 (18%), Positives = 18/38 (47%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
          V D+I+ ++GK +   T++    +++     +   I  
Sbjct: 56 VGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQT 93

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
                    LGL ++G   G    L +LG F+  + +   A   G ++
Sbjct: 23  TMPKDSGALLGLKVVG---GKMTDLGRLGAFITKVKKGSLADVVGHLR 67

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
                LGL ++G   G    L +LG F+  + +   A   G ++
Sbjct: 27  DSGALLGLKVVG---GKMTDLGRLGAFITKVKKGSLADVVGHLR 67

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 316 VELMKGA-EGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL +   + LG+SI+G   MG     G    GIF+K + E   A ++G ++
Sbjct: 5   VELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLK 56

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 366 EGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           + LG+SI+G   MG     G    GIF+K + E   A ++G ++ 
Sbjct: 13  KSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 57

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          L+  D+I+EVDG  L   + E A   +R     V F++  
Sbjct: 55 LKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 94

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
            D+I+EVDG  L   + E A   +R     V F++  
Sbjct: 57 PGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 94

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
          + + D+I+ ++  SL G     A  +L+     V   I ++ D 
Sbjct: 47 IHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA 90

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 42
          + D+I+ ++  SL G     A  +L+     V   I ++ D 
Sbjct: 49 IGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDA 90

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VEL +    LG++I G     D       I + ++T+ G A R G I 
Sbjct: 7   VELKRYGGPLGITISGTEEPFD------PIIISSLTKGGLAERTGAIH 48

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
           +    LG++I G     D       I + ++T+ G A R G I +
Sbjct: 11  RYGGPLGITISGTEEPFD------PIIISSLTKGGLAERTGAIHI 49

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 8e-06
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGL---GLSI 372
           + +++   GLG+SI G         +  GIF+  ++E G AAR G   G + L   G+++
Sbjct: 12  LTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVAL 71

Query: 373 IGM 375
            G 
Sbjct: 72  QGA 74

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
          R  ++V D+++EV+G +L G     A   LR     V+  + RE
Sbjct: 54 RAGVRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 97

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
          V D+++EV+G +L G     A   LR     V+  + RE
Sbjct: 59 VGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE 97

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 8/45 (17%), Positives = 21/45 (46%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
          +  L   D ++ +DG +   +T   A + +++ S  +   + + K
Sbjct: 40 QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 7/40 (17%), Positives = 19/40 (47%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
            D ++ +DG +   +T   A + +++ S  +   + + K
Sbjct: 45 QGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK 84

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 11/43 (25%), Positives = 24/43 (55%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
          L++ D+++ +D   L   + E A  +L+    LV+  I +++D
Sbjct: 57 LELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 99

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
          + D+++ +D   L   + E A  +L+    LV+  I +++D
Sbjct: 59 LGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 99

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V+L K  +  LG++I        +      + +  I +   A R G ++
Sbjct: 14  VKLPKKHSVELGITI----SSPSSRKPGDPLVISDIKKGSVAHRTGTLE 58

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 11/50 (22%), Positives = 20/50 (40%)

Query: 52  RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
             +L   D I+ +DG     +T   A   ++  S  +   I R +  + S
Sbjct: 44  AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWS 93

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (93), Expect = 8e-05
 Identities = 10/45 (22%), Positives = 18/45 (40%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
            D I+ +DG     +T   A   ++  S  +   I R +  + S
Sbjct: 49 PGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWS 93

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 53  QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
           + LQ  D+II+ +G S + +    A S+L+     V  +I RE
Sbjct: 58  KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 39
             D+II+ +G S + +    A S+L+     V  +I RE
Sbjct: 62  PGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVRE 100

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 11/49 (22%), Positives = 24/49 (48%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
           LQ ND+++ V+G  +  V   +A   LR +  +   ++ R +    + +
Sbjct: 56  LQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPL 104

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 9/47 (19%), Positives = 22/47 (46%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
            ND+++ V+G  +  V   +A   LR +  +   ++ R +    + +
Sbjct: 58  ENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPL 104

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L K    G G+++ G          +  I +  +   G A  DG +Q
Sbjct: 11  VTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQ 57

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
               G G+++ G          +  I +  +   G A  DG +Q 
Sbjct: 16  DSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA--DGLLQE 58

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           T L   L K   G G +IIG   G +       + VK++   G AA+DG+++
Sbjct: 19  TFLSTTLKKSNMGFGFTIIG---GDE---PDEFLQVKSVIPDGPAAQDGKME 64

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 6/44 (13%)

Query: 364 GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQV 407
              G G +IIG   G +       + VK++   G AA+DG+++ 
Sbjct: 28  SNMGFGFTIIG---GDE---PDEFLQVKSVIPDGPAAQDGKMET 65

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 11/51 (21%), Positives = 25/51 (49%)

Query: 52  RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 102
           +  +++ D ++ +DG S  G+T   A + ++  +G +   + R      SE
Sbjct: 44  QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSE 94

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSE 46
          + D ++ +DG S  G+T   A + ++  +G +   + R      SE
Sbjct: 49 IGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSE 94

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 316 VELMKG-AEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           + + K   E LG+SI G      G        GIF+  ++  GAA RDGR++
Sbjct: 13  LCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLR 64

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 363 QGAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
              E LG+SI G      G        GIF+  ++  GAA RDGR++
Sbjct: 18  APGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLR 64

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V++ KGA+G G SI G   G +    K+ ++V  + E G A R+GR++
Sbjct: 15  VDMEKGAKGFGFSIRG---GRE---YKMDLYVLRLAEDGPAIRNGRMR 56

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 56  QVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           +V DQIIE++G+S   +T   A  ++++    VR L+ R      S
Sbjct: 56  RVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGPS 101

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 45
           V DQIIE++G+S   +T   A  ++++    VR L+ R      S
Sbjct: 57  VGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTGSGPS 101

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 11/45 (24%), Positives = 23/45 (51%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
          +  L   D+++EV+G+++   T +   S +R     VR L+   +
Sbjct: 42 KAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE 86

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
            D+++EV+G+++   T +   S +R     VR L+   +
Sbjct: 47 AGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE 86

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.004
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQG 364
             L KG  G G  + G          KLG +++ +     A + G + G
Sbjct: 7   CCLEKGPNGYGFHLHG-------EKGKLGQYIRLVEPGSPAEKAGLLAG 48

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 96
          +L V D I+ V+G+ L   T + A   L+ T   V   +   K
Sbjct: 48 ALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 90

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK 40
          V D I+ V+G+ L   T + A   L+ T   V   +   K
Sbjct: 51 VGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMK 90

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 297 AASAEYELEKRVEKLTLLGVELMK--GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAG 354
            +S +   E   E+L L  V+L +    + LGL++           + +GI++  I    
Sbjct: 4   GSSGDIHQEMDREELELEEVDLYRMNSQDKLGLTV----CYRTDDEDDIGIYISEIDPNS 59

Query: 355 AAARDGRIQ 363
            AA+DGRI+
Sbjct: 60  IAAKDGRIR 68

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 9e-05
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
          LQV D+++ ++G +    T E A  +LR+ +   + ++  E D
Sbjct: 57 LQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEVEFD 99

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 10/41 (24%), Positives = 22/41 (53%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 41
          V D+++ ++G +    T E A  +LR+ +   + ++  E D
Sbjct: 59 VGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEVEFD 99

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 11/48 (22%), Positives = 14/48 (29%), Gaps = 2/48 (4%)

Query: 361 RIQGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVR 408
                 G GL + G     +         V  I     A R G +QV 
Sbjct: 15  CGDPLSGFGLQLQGGIFATETL--SSPPLVCFIEPDSPAERCGLLQVG 60

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 12/49 (24%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L      G GL + G     +         V  I     A R G +Q
Sbjct: 12  VVLCGDPLSGFGLQLQGGIFATETL--SSPPLVCFIEPDSPAERCGLLQ 58

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L       LG+SI    VG        GI++ +I + GA A DGRI+
Sbjct: 5   VTLNMEKYNFLGISI----VGQSNERGDGGIYIGSIMKGGAVAADGRIE 49

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVR 408
             LG+SI    VG        GI++ +I + GA A DGRI+  
Sbjct: 13  NFLGISI----VGQSNERGDGGIYIGSIMKGGAVAADGRIEPG 51

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 7/45 (15%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRN---TSGLVRFLIGREK 96
          ++  D +++V+  +   ++ + A  VLR+     G +   + + +
Sbjct: 48 IEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKLE 92

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRN---TSGLVRFLIGREK 40
            D +++V+  +   ++ + A  VLR+     G +   + + +
Sbjct: 50 PGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKLE 92

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 309 EKLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           E+LTL       G+ GLG+S+ G     + G + LGIF+K+I   GAA +DGR++
Sbjct: 23  EQLTLEIPLNDSGSAGLGVSLKG-NKSRETGTD-LGIFIKSIIHGGAAFKDGRLR 75

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 7/51 (13%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS-------GLVRFLIGREKDP 98
           L++NDQ+I V+G++L+G +   A   LR +        G+++ +I R   P
Sbjct: 74  LRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP 124

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 406
            G+ GLG+S+ G     + G + LGIF+K+I   GAA +DGR++
Sbjct: 34  SGSAGLGVSLKG-NKSRETGTD-LGIFIKSIIHGGAAFKDGRLR 75

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 7/48 (14%)

Query: 2   NDQIIEVDGKSLVGVTQEYAASVLRNTS-------GLVRFLIGREKDP 42
           NDQ+I V+G++L+G +   A   LR +        G+++ +I R   P
Sbjct: 77  NDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP 124

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAEGLGLSIIGM 375
           + + +G+ GLG +I+G       G +  GIF+  I   G A   G ++      LS+ G+
Sbjct: 13  IVIHRGSTGLGFNIVG-------GEDGEGIFISFILAGGPADLSGELR-KGDQILSVNGV 64

Query: 376 GVGADAGLEKLGIFVKTITEAGAAARDGRIQVRRGPK 412
            +  +A  E+       +  AG       I  +  P+
Sbjct: 65  DL-RNASHEQA---AIALKNAGQTV---TIIAQYKPE 94

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 14/50 (28%), Positives = 23/50 (46%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVA 104
           L+  DQI+ V+G  L   + E AA  L+N    V  +   + +  +   A
Sbjct: 52  LRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 101

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEVA 48
             DQI+ V+G  L   + E AA  L+N    V  +   + +  +   A
Sbjct: 54  KGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 101

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 98
          L   D I+E++ +++  ++      +L++         +I R   P
Sbjct: 48 LCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP 93

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTS--GLVRFLIGREKDP 42
            D I+E++ +++  ++      +L++         +I R   P
Sbjct: 50 EGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP 93

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V + K   E LG+ I+  G G+        + +  +   G A + G++ 
Sbjct: 2   VFIEKQKGEILGVVIVESGWGSILP----TVIIANMMHGGPAEKSGKLN 46

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 366 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVR 408
           E LG+ I+  G G+        + +  +   G A + G++ + 
Sbjct: 10  EILGVVIVESGWGSILP----TVIIANMMHGGPAEKSGKLNIG 48

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 7/40 (17%), Positives = 18/40 (45%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 94
          LQ  D +++++ + +        A  +R+    +  L+ R
Sbjct: 36 LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR 75

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 5/38 (13%), Positives = 16/38 (42%)

Query: 1  VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGR 38
            D +++++ + +        A  +R+    +  L+ R
Sbjct: 38 QLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR 75

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 6e-04
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V + K A  LG++I G   GA+         + TI   G+A   G+++
Sbjct: 10  VRVKKSAATLGIAIEG---GANTRQP--LPRIVTIQRGGSAHNCGQLK 52

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRN-----TSGLVRFLIGREK 96
          L+V   I+EV+G +L G     AA ++           + FL+    
Sbjct: 51 LKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN 97

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (87), Expect = 8e-04
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 56  QVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 103
           Q+ D+++ ++G      T E A  +LR++S   +  +  E D   S +
Sbjct: 65  QIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI 112

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 316 VELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L      G G+ + G  V A   L      +  I     A R G +Q
Sbjct: 19  VVLTADPVTGFGIQLQG-SVFATETLSS-PPLISYIEADSPAERCGVLQ 65

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 1   VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNSEV 47
           + D+++ ++G      T E A  +LR++S   +  +  E D   S +
Sbjct: 66  IGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVI 112

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 2/46 (4%)

Query: 363 QGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQVR 408
               G G+ + G  V A   L      +  I     A R G +Q+ 
Sbjct: 24  DPVTGFGIQLQG-SVFATETLSS-PPLISYIEADSPAERCGVLQIG 67

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           VE++K     LG+S+      +     K  I +  I  A    R G + 
Sbjct: 19  VEIVKTPGSALGISLTT---TSLRN--KSVITIDRIKPASVVDRSGALH 62

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 8/38 (21%), Positives = 19/38 (50%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
          L   D+++E++G  + G        +L +  G + F++
Sbjct: 60 LHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL 97

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 7/35 (20%), Positives = 18/35 (51%)

Query: 2  NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
           D+++E++G  + G        +L +  G + F++
Sbjct: 63 GDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVL 97

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 55 LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
          L VND++IEV+G  + G T +    ++   S  +   +
Sbjct: 57 LAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITV 94

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 316 VELMK--GAEGLGLSIIG---MGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L+K    + LG  I     + V A    ++ GIF+  +   G A   G + 
Sbjct: 6   VRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLA 58

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP 98
             L+  D++++V+              ++  +   +  +I R  +P
Sbjct: 47 LGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISR--NP 91

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query: 52  RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDPVNS 101
           ++ L+V DQI+ V+ KSL  VT   A   L+ +  LV  +    +    S
Sbjct: 50  KEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISGPS 99

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 6/46 (13%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGR 361
           +   K  EGLG SI G   G++ G+   GI+V  +     A ++G 
Sbjct: 14  LRRAKAHEGLGFSIRG---GSEHGV---GIYVSLVEPGSLAEKEGL 53

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 316 VELMKG-AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
             L K    GLG S+ G      A LE   I V  +   G A+++G IQ
Sbjct: 12  TILHKEEGAGLGFSLAG-----GADLENKVITVHRVFPNGLASQEGTIQ 55

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 6/48 (12%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
           V L +   G G  I+G   G + G     I +  +   G+A RDGR+ 
Sbjct: 13  VHLRRMESGFGFRILG---GDEPGQP---ILIGAVIAMGSADRDGRLH 54

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 9/48 (18%)

Query: 316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQ 363
            +L  G  GLGL +I  G           + +  +   GAAA DG +Q
Sbjct: 31  TKLTVGNLGLGLVVIQNGPY---------LQISHLINKGAAASDGILQ 69

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 2  NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 36
           D+I E++G S+   T E    +LR   G + F I
Sbjct: 47 GDEIREINGISVANQTVEQLQKMLREMRGSITFKI 81

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 58 NDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLI 92
           D+I E++G S+   T E    +LR   G + F I
Sbjct: 47 GDEIREINGISVANQTVEQLQKMLREMRGSITFKI 81

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE 95
           L++ D +IEV+G+++V V      +++R     +   +   
Sbjct: 61  LRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV 101

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNT----SGLVRFLIGREKDPVNSE 102
           L   DQ++ ++G+ +   T +     ++ +    SG +  L+         E
Sbjct: 54  LNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYDVVE 105

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 9/43 (20%), Positives = 24/43 (55%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD 97
           L+V D+I+ V+G+S++ +       ++++    V   I  +++
Sbjct: 62  LKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE 104

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 55  LQVNDQIIEVDGKSLVGVTQEYAASVLRNTSG----LVRFLIGREKDPVNSE 102
           +   D+I+ ++GK +   T   A + L+         +  ++         +
Sbjct: 62  VVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDD 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	612
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.7
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.69
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.69
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.68
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.68
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.68
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.65
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.65
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.65
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.64
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.64
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.63
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.62
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.54
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.48
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.47
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.45
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.4
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.39
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.37
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.34
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.34
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.3
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.28
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.28
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.27
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.26
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.26
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.25
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.22
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.19
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.19
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.14
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.14
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.11
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.09
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.08
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.06
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.06
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.05
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.05
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.03
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.03
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.02
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.01
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.0
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	98.98
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.98
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.97
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.97
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.96
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.95
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.94
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.94
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.94
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	98.93
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.92
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.91
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.91
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.88
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.85
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.84
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.84
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.83
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	98.83
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	98.83
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.8
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.79
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.78
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.77
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.77
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.76
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.75
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	98.75
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.74
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.74
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.74
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	98.74
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	98.72
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.71
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	98.71
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	98.68
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	98.68
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	98.67
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	98.66
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	98.64
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.64
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	98.63
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	98.61
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	98.57
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.57
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.57
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.56
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.54
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.54
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	98.54
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	98.53
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.53
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.53
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	98.52
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.52
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	98.52
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.51
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	98.51
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	98.5
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.49
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	98.49
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.46
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	98.44
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.42
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.41
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.41
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.41
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.4
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.4
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	98.39
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.38
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.38
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.37
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.37
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.37
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.36
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.36
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	98.35
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.35
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.34
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.34
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.33
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	98.3
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	98.3
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.3
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.3
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	98.3
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	98.29
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.29
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	98.27
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.25
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.25
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	98.24
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	98.23
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.21
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.21
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.15
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.15
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.14
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.13
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.1
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.09
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.05
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.04
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.01
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	97.98
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	97.97
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	97.89
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	97.84
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	97.82
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	97.73
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	97.45
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	97.07
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	97.01
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.49
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	96.21
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	95.97
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	95.93
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	95.8
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	95.53
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	95.51
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	95.43
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	95.39
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	95.24
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	94.81
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	94.78
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	94.7
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	94.59
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	94.43
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	94.34
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	94.16
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	93.8
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	93.77
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	93.76
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	93.74
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	93.58
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	93.4
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	93.34
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	93.1
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	92.37
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	92.31
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	91.97
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	91.84
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	91.84
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	91.44
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	90.46
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	90.39
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	90.01
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	89.23
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	89.0
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	88.4
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	87.95
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	85.05
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	84.56
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	83.68
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	83.6
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	82.99
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	82.96
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	82.76
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	80.21

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.8e-39  Score=316.46  Aligned_cols=189  Identities=31%  Similarity=0.568  Sum_probs=150.1

Q ss_pred             eeccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccChH-HH-------HHHHHHHHHhhhccchhHHHHHHH
Q psy12938        406 QVRRGPKGVLKDWEQFKQYECQMRRDKELQRLAQIQKLALTCQSSE-EA-------RKEAEMEAELKELEDDGFLLEYQK  477 (612)
Q Consensus       406 ~~~~~~~gv~~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~-------~~~~e~~~~l~el~Dd~~l~~yr~  477 (612)
                      ..+|||||||+|||+|+ +..+++.+...+....+.+++.++.... ++       ....+.+....+.+|+.||++||+
T Consensus         4 ~~nTGpKGVi~D~r~~k-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~d~~de~~l~~~r~   82 (217)
T d2trcp_           4 ATHTGPKGVINDWRKFK-LESEDGDSIPPSKKEILRQMSSPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRR   82 (217)
T ss_dssp             CCSSHHHHHHHHHHHHH-HHHTTCSSSTTSCSSCSCSSCCSSSSCCGGGSSCCCCSSCHHHHHHHHHCCCCHHHHHHHHH
T ss_pred             CCCCCccccHHHHHHHH-hhhhccchhhHHHHHHHHHhhhhccccchhHHHHHhcccchhhhhhhhcccccHHHHHHHHH
Confidence            35999999999999998 4444433332222233334443333211 00       011122223345567889999999


Q ss_pred             HHHHHHHHH-----------------HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc
Q psy12938        478 EKMKQMYDR-----------------LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV  540 (612)
Q Consensus       478 ~R~~el~~~-----------------~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~  540 (612)
                      +||+||+.+                 .|+++|+++.++++||||||++||++|+.|+++|..||++||+||||+|+++..
T Consensus        83 ~Rl~el~~~~~~~~~~G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~  162 (217)
T d2trcp_          83 QCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNT  162 (217)
T ss_dssp             HHHHHHHHHHCCCCCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHH
T ss_pred             HHHHHHHHHHhccccCCeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccc
Confidence            999999763                 589999998889999999999999999999999999999999999999999866


Q ss_pred             hhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCcccCC
Q psy12938        541 GDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLRAG  597 (612)
Q Consensus       541 ~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~~  597 (612)
                      +  ++.+|++++||||++||||+++++|||+.+++|++|+.++||+||.++|+|+++
T Consensus       163 ~--~~~~~~i~~lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~~k  217 (217)
T d2trcp_         163 G--AGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLLPER  217 (217)
T ss_dssp             T--CSTTSCGGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTTCSCCC
T ss_pred             h--hHHhCCCCCCCeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHcCCCCCC
Confidence            4  568999999999999999999999999999999999999999999999999864

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.9e-18  Score=146.44  Aligned_cols=93  Identities=22%  Similarity=0.375  Sum_probs=80.9

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeE
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGN  567 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~  567 (612)
                      |.+.+.. ..+.+|||+||++||++|+.|.+.|.+|+++|+++.|++++.+..+ .+..+|+++++||+++|+||+.+++
T Consensus        11 f~~~l~~-~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~-~~~~~~~V~~~Pt~~~~~~G~~v~~   88 (105)
T d2ifqa1          11 FQEALDA-AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ-DVASECEVKCMPTFQFFKKGQKVGE   88 (105)
T ss_dssp             HHHHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH-HHHHHTTCCBSSEEEEEETTEEEEE
T ss_pred             HHHHHHh-CCCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCH-hHHHHcCceEEEEEEEEECCEEEEE
Confidence            3334433 3456899999999999999999999999999999999999999887 7889999999999999999999999


Q ss_pred             EEeccccccCCCCHHHHHHHHHH
Q psy12938        568 FVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       568 ~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++|. +       .++|+.+|.+
T Consensus        89 ~~G~-~-------~~~l~~~i~~  103 (105)
T d2ifqa1          89 FSGA-N-------KEKLEATINE  103 (105)
T ss_dssp             EESC-C-------HHHHHHHHHH
T ss_pred             EeCC-C-------HHHHHHHHHh
Confidence            9885 2       3788888875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.4e-17  Score=141.74  Aligned_cols=86  Identities=12%  Similarity=0.185  Sum_probs=78.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      .+..|||+||++||++|+.|.|.|++||++|+++.|+++|.+..+ .++.+|.+.++||+++||+|+.+++++|. +.  
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~-~~--   95 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQ-GTAATNNISATPTFQFFRNKVRIDQYQGA-DA--   95 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEESS-CH--
T ss_pred             CCCEEEEEEECCCCCCccccchhhhccccccccccccccccccch-hhhhhcCceeceEEEEEECCEEEEEEeCC-CH--
Confidence            355799999999999999999999999999999999999999887 78899999999999999999999999985 33  


Q ss_pred             CCCCHHHHHHHHHHC
Q psy12938        577 EGYFVEDVEAFLVEA  591 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~  591 (612)
                           +.|+.+|.+|
T Consensus        96 -----~~l~~~i~k~  105 (107)
T d1gh2a_          96 -----VGLEEKIKQH  105 (107)
T ss_dssp             -----HHHHHHHHHH
T ss_pred             -----HHHHHHHHHh
Confidence                 7788888764

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.69  E-value=7.3e-17  Score=138.37  Aligned_cols=84  Identities=15%  Similarity=0.288  Sum_probs=77.8

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      .++||+||++||++|+.|.+.|++|+++|++++|++++.++.+ .+..+|++.++||+++|++|+.+++++|. .     
T Consensus        19 ~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~-~~~~~~~V~~~Pt~i~~k~G~~v~~~~G~-~-----   91 (103)
T d1syra_          19 ELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS-EVTEKENITSMPTFKVYKNGSSVDTLLGA-N-----   91 (103)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTH-HHHHHTTCCSSSEEEEEETTEEEEEEESC-C-----
T ss_pred             CcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCc-ceeeeeeeecceEEEEEECCEEEEEEeCc-C-----
Confidence            4899999999999999999999999999999999999999887 78899999999999999999999999885 2     


Q ss_pred             CCHHHHHHHHHHC
Q psy12938        579 YFVEDVEAFLVEA  591 (612)
Q Consensus       579 ~~~~~lE~~L~~~  591 (612)
                        .+.|+.+|.+|
T Consensus        92 --~~~l~~~i~k~  102 (103)
T d1syra_          92 --DSALKQLIEKY  102 (103)
T ss_dssp             --HHHHHHHHHTT
T ss_pred             --HHHHHHHHHhh
Confidence              27899999876

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.69  E-value=3.6e-17  Score=142.84  Aligned_cols=86  Identities=15%  Similarity=0.422  Sum_probs=79.0

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      .+.+|||+||++||++|+.|.+.|++++++|++++|++|+.++.+ .++.+|.++++|||++|+||+.+++++|. +.  
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~I~~~Pt~~~~k~G~~v~~~~G~-~~--  100 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELK-AVAEEWNVEAMPTFIFLKDGKLVDKTVGA-DK--  100 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCH-HHHHHHHCSSTTEEEEEETTEEEEEEECC-CT--
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccc-cccccCeecccceEEEEECCEEEEEEcCC-CH--
Confidence            455899999999999999999999999999999999999999887 78899999999999999999999999885 22  


Q ss_pred             CCCCHHHHHHHHHHC
Q psy12938        577 EGYFVEDVEAFLVEA  591 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~  591 (612)
                           ++|+.+|.+|
T Consensus       101 -----~~l~~~i~k~  110 (113)
T d1ti3a_         101 -----DGLPTLVAKH  110 (113)
T ss_dssp             -----THHHHHHHHH
T ss_pred             -----HHHHHHHHHH
Confidence                 6799999876

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.68  E-value=7.9e-17  Score=140.91  Aligned_cols=85  Identities=14%  Similarity=0.340  Sum_probs=78.6

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGE  577 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~  577 (612)
                      +.+|+|+||++||++|+.|.+.|++|++.|++++|++|+.+..+ .+..+|+++++||+++|++|+.+.+++|.      
T Consensus        28 ~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~-~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~------  100 (114)
T d1xfla_          28 KTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELK-SVASDWAIQAMPTFMFLKEGKILDKVVGA------  100 (114)
T ss_dssp             TCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSH-HHHHHTTCCSSSEEEEEETTEEEEEEESC------
T ss_pred             CCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeece-eeccccceeeeEEEEEEECCEEEEEEeCc------
Confidence            45899999999999999999999999999999999999999887 78899999999999999999999999874      


Q ss_pred             CCCHHHHHHHHHHC
Q psy12938        578 GYFVEDVEAFLVEA  591 (612)
Q Consensus       578 ~~~~~~lE~~L~~~  591 (612)
                        ..++|+.+|.+|
T Consensus       101 --~~~~l~~~i~k~  112 (114)
T d1xfla_         101 --KKDELQSTIAKH  112 (114)
T ss_dssp             --CHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHh
Confidence              348899999876

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.68  E-value=3.2e-17  Score=140.71  Aligned_cols=96  Identities=9%  Similarity=0.231  Sum_probs=83.6

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      ..|.+.|.+  ++.+|+|+||++||++|+.|.+.+.+|+++|. ..+|++|+.+..+ .++.+|.++++||+++|++|+.
T Consensus         7 ~~f~~~v~~--~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~-~l~~~~~V~~~Pt~~~~~~G~~   83 (104)
T d1fb6a_           7 SSWKEFVLE--SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP-GIATQYNIRSIPTVLFFKNGER   83 (104)
T ss_dssp             TTHHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEE
T ss_pred             hhHHHHHHc--CCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccch-hhhhhcceeeeeEEEEEEcCeE
Confidence            345555654  35689999999999999999999999999995 5899999999887 7889999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      ++++.|....       ++|..+|.++
T Consensus        84 v~~~~G~~~~-------~~l~~~i~~~  103 (104)
T d1fb6a_          84 KESIIGAVPK-------STLTDSIEKY  103 (104)
T ss_dssp             EEEEEECCCH-------HHHHHHHHHH
T ss_pred             EEEEeCCCCH-------HHHHHHHHHh
Confidence            9999997554       8899998764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.68  E-value=1.5e-16  Score=139.01  Aligned_cols=73  Identities=16%  Similarity=0.371  Sum_probs=69.9

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEec
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRL  571 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~  571 (612)
                      +.+|+|+||++||++|+.|.+.|++||++|++++|++||++..+ .++.+|++.++||+++|++|+.+.+++|.
T Consensus        26 ~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~-~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~   98 (113)
T d1r26a_          26 DILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNS-EIVSKCRVLQLPTFIIARSGKMLGHVIGA   98 (113)
T ss_dssp             SSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESS
T ss_pred             CCeEEEEEECCCCccchhhceeccccccccccccccccccccch-hhHHHccccCCCEEEEEECCEEEEEEeCC
Confidence            45899999999999999999999999999999999999999887 78999999999999999999999999985

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.65  E-value=2e-16  Score=136.01  Aligned_cols=93  Identities=20%  Similarity=0.392  Sum_probs=80.8

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      .|.+.+.   ++.+|||+||++||++|+.|.+.|..++.+|+ .++|++||.+..+ .++.+|.+.++||+++|++|+.+
T Consensus         9 ~f~~~i~---~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~-~~~~~~~V~~~Pt~~~~~~G~~~   84 (105)
T d1nw2a_           9 NFQQAIQ---GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP-ETTSQFGIMSIPTLILFKGGEPV   84 (105)
T ss_dssp             THHHHTT---SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCH-HHHHHTTCCBSSEEEEEETTEEE
T ss_pred             HHHHHHh---CCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCc-ccHHHCCcceeeEEEEEECCEEE
Confidence            3544453   34589999999999999999999999999997 5999999999887 78899999999999999999999


Q ss_pred             eEEEeccccccCCCCHHHHHHHHHH
Q psy12938        566 GNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       566 ~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .+++|+...       ++|+.+|.+
T Consensus        85 ~~~~G~~~~-------~~l~~~i~~  102 (105)
T d1nw2a_          85 KQLIGYQPK-------EQLEAQLAD  102 (105)
T ss_dssp             EEEESCCCH-------HHHHHHTTT
T ss_pred             EEEECCCCH-------HHHHHHHHH
Confidence            999998544       888888754

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.65  E-value=3.6e-16  Score=135.04  Aligned_cols=95  Identities=15%  Similarity=0.226  Sum_probs=82.8

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      .|.+.|.+  .+.+|+|+||++||++|+.|.+.|+++|.+|++ ++|++||++..+ .++.+|.++++||+++|++|+.+
T Consensus        11 ~f~~~v~~--~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~I~~~Pt~~~~~~g~~v   87 (108)
T d1thxa_          11 EFESEVLK--AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP-TTVKKYKVEGVPALRLVKGEQIL   87 (108)
T ss_dssp             GHHHHTTT--CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCH-HHHHHTTCCSSSEEEEEETTEEE
T ss_pred             HHHHHHHh--CCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccH-HHHHHhcccCCCEEEEEECCEEE
Confidence            45555654  345899999999999999999999999999974 999999999887 78899999999999999999999


Q ss_pred             eEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        566 GNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       566 ~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .++.|...       .++|+.||.++
T Consensus        88 ~~~~G~~~-------~~~l~~~i~~~  106 (108)
T d1thxa_          88 DSTEGVIS-------KDKLLSFLDTH  106 (108)
T ss_dssp             EEEESCCC-------HHHHHHHHHHH
T ss_pred             EEEeCCCC-------HHHHHHHHHHh
Confidence            99998744       48899998764

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=9.7e-17  Score=138.61  Aligned_cols=95  Identities=14%  Similarity=0.257  Sum_probs=81.5

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc-CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH-TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~-~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      .|.+.|.+  .+.+|+|+||++||++|+.|.+.+.++|.++ ..++|++++.+..+ .++.+|.+.++||+++|++|+.+
T Consensus        11 ~f~~~v~~--~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~-~l~~~~~v~~~PT~~~~~~G~~v   87 (108)
T d2trxa_          11 SFDTDVLK--ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-GTAPKYGIRGIPTLLLFKNGEVA   87 (108)
T ss_dssp             THHHHTTT--CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCT-THHHHTTCCSSSEEEEEETTEEE
T ss_pred             HHHHHHHh--CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchh-hHHHHhCCCcEEEEEEEECCEEE
Confidence            35455544  3568999999999999999999999999987 57999999999876 78899999999999999999999


Q ss_pred             eEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        566 GNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       566 ~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      .++.|...       .++|..||.++
T Consensus        88 ~~~~G~~~-------~~~l~~~i~~~  106 (108)
T d2trxa_          88 ATKVGALS-------KGQLKEFLDAN  106 (108)
T ss_dssp             EEEESCCC-------HHHHHHHHHHH
T ss_pred             EEEeCCCC-------HHHHHHHHHHh
Confidence            99998643       48888888753

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.64  E-value=2.9e-16  Score=135.43  Aligned_cols=96  Identities=11%  Similarity=0.276  Sum_probs=84.2

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEV  564 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~  564 (612)
                      +.|.+.|.+  .+.+|+|+||++||++|+.|.+.+.+++.++. .++|++||++..+ .++.+|.+.++||+++|++|+.
T Consensus         9 ~~f~~~v~~--s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~-~l~~~~~V~~~Pt~~~~~~G~~   85 (107)
T d1dbya_           9 DTFKNVVLE--SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP-NVASEYGIRSIPTIMVFKGGKK   85 (107)
T ss_dssp             HHHHHHTTT--CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-HHHHHHTCCSSCEEEEESSSSE
T ss_pred             HHHHHHHHh--CCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccch-hHHHHhcccceEEEEEEECCeE
Confidence            456666754  35689999999999999999999999999984 7999999999887 7889999999999999999999


Q ss_pred             eeEEEeccccccCCCCHHHHHHHHHHC
Q psy12938        565 VGNFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       565 ~~~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +++++|....       ++|..+|.++
T Consensus        86 v~~~~G~~~~-------~~l~~~i~~~  105 (107)
T d1dbya_          86 CETIIGAVPK-------ATIVQTVEKY  105 (107)
T ss_dssp             EEEEESCCCH-------HHHHHHHHHH
T ss_pred             EEEEeCCCCH-------HHHHHHHHHh
Confidence            9999997554       8888888764

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.64  E-value=4.7e-16  Score=135.51  Aligned_cols=94  Identities=13%  Similarity=0.218  Sum_probs=79.0

Q ss_pred             HHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC-chhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        488 FLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC-VGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~-~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |.+.+.. ..+.+|||+||++||++|+.|.+.|++||++|++++|++++.+. .+ .+..+|.+.++||+++||+|+.++
T Consensus        16 f~~~l~~-~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~-~l~~~~~V~~~Pt~~~~k~G~~v~   93 (112)
T d1f9ma_          16 FWPIVKA-AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENK-TLAKELGIRVVPTFKILKENSVVG   93 (112)
T ss_dssp             HHHHHHT-CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH-HHHHHHCCSSSSEEEEEETTEEEE
T ss_pred             HHHHHHH-cCCCEEEEEEEcCCCcchHHHHHHHhhhccccccceeecccccccch-hhHhheeeccCCEEEEEECCEEEE
Confidence            4444543 24558999999999999999999999999999999999999874 54 788999999999999999999999


Q ss_pred             EEEeccccccCCCCHHHHHHHHHHC
Q psy12938        567 NFVRLGEELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       567 ~~vg~~~~~g~~~~~~~lE~~L~~~  591 (612)
                      +++|..        .+.+..+|.++
T Consensus        94 ~~~G~~--------~~~l~e~i~~~  110 (112)
T d1f9ma_          94 EVTGAK--------YDKLLEAIQAA  110 (112)
T ss_dssp             EEESSC--------HHHHHHHHHHH
T ss_pred             EEeCCC--------HHHHHHHHHHc
Confidence            999862        36677777653

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.63  E-value=6e-16  Score=134.80  Aligned_cols=86  Identities=15%  Similarity=0.346  Sum_probs=78.6

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      +.+|||+||++||++|+.|.+.|++||++|+ +++|++||.+..+ .+..+|.+.++||+++|++|+.+.+++|.     
T Consensus        24 ~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~-~l~~~~~v~~~Pt~~~~~~G~~v~~~~G~-----   97 (112)
T d1ep7a_          24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA-AVAEAAGITAMPTFHVYKDGVKADDLVGA-----   97 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTH-HHHHHHTCCBSSEEEEEETTEEEEEEESC-----
T ss_pred             CCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccc-cccccccccCCCEEEEEECCEEEEEEeCc-----
Confidence            3479999999999999999999999999997 4999999999887 78899999999999999999999999885     


Q ss_pred             CCCCHHHHHHHHHHCC
Q psy12938        577 EGYFVEDVEAFLVEAG  592 (612)
Q Consensus       577 ~~~~~~~lE~~L~~~g  592 (612)
                         +.++|+.||.+|-
T Consensus        98 ---~~~~l~~~i~k~~  110 (112)
T d1ep7a_          98 ---SQDKLKALVAKHA  110 (112)
T ss_dssp             ---CHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHh
Confidence               3488999998874

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=1e-15  Score=132.87  Aligned_cols=86  Identities=16%  Similarity=0.288  Sum_probs=77.9

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      ++.+|+|+||++||++|+.|.+.|++++++|++ +.|++|+.+..+ .+..+|.+.++||+++|++|+.+.+++|.    
T Consensus        24 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~-~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~----   98 (111)
T d1xwaa_          24 SGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE-DIAMEYNISSMPTFVFLKNGVKVEEFAGA----   98 (111)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTEEEEEEESC----
T ss_pred             CCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeecCc-chhhcCCCccccEEEEEECCEEEEEEeCC----
Confidence            355899999999999999999999999999985 999999999876 78899999999999999999999999875    


Q ss_pred             cCCCCHHHHHHHHHHC
Q psy12938        576 GEGYFVEDVEAFLVEA  591 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~  591 (612)
                          ..++|+.+|.+|
T Consensus        99 ----~~~~l~~~I~~~  110 (111)
T d1xwaa_          99 ----NAKRLEDVIKAN  110 (111)
T ss_dssp             ----CHHHHHHHHHHT
T ss_pred             ----CHHHHHHHHHhc
Confidence                236799999875

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.3e-15  Score=132.42  Aligned_cols=84  Identities=14%  Similarity=0.143  Sum_probs=72.5

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~  565 (612)
                      ++.++|..+ .+..|||+||++||++|+.|.+.|++||++|++ ++|++||++..+ ++++.|.+.++||+++|++|+.+
T Consensus        12 ~~dq~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~-~la~~~~I~~~PT~~~f~~g~~i   89 (137)
T d1qgva_          12 QVDQAILSE-EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVP-DFNKMYELYDPCTVMFFFRNKHI   89 (137)
T ss_dssp             HHHHHHHTC-SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCC-TTTTSSCSCSSCEEEEEETTEEE
T ss_pred             HHHHHHHhC-CCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccc-hhhhhcCeeeEEEEEEEeCCcEE
Confidence            345556543 456899999999999999999999999999986 999999999887 88899999999999999999999


Q ss_pred             eEEEecc
Q psy12938        566 GNFVRLG  572 (612)
Q Consensus       566 ~~~vg~~  572 (612)
                      ....|..
T Consensus        90 ~~~~g~~   96 (137)
T d1qgva_          90 MIDLGTG   96 (137)
T ss_dssp             EEECC--
T ss_pred             EEEecCC
Confidence            8766653

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.48  E-value=1.2e-14  Score=127.92  Aligned_cols=87  Identities=14%  Similarity=0.196  Sum_probs=69.3

Q ss_pred             CCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccc
Q psy12938        496 PRHITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGE  573 (612)
Q Consensus       496 ~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~  573 (612)
                      .....|++.||++||++|+.|.++|.+|+++|++  ++|.+||.+..+ .++.+|+++.+||+++|++|+.++++.|..+
T Consensus        28 ~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~~-~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~~~  106 (119)
T d2es7a1          28 VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE-AIGDRFNVRRFPATLVFTDGKLRGALSGIHP  106 (119)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHH-HHHHTTTCCSSSEEEEESCC----CEESCCC
T ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCCH-HHHHhcCcCcceEEEEEEcCeEEEEeeCCCC
Confidence            3566899999999999999999999999999986  677899988776 7899999999999999999999999999866


Q ss_pred             cccCCCCHHHHHHHHHH
Q psy12938        574 ELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       574 ~~g~~~~~~~lE~~L~~  590 (612)
                      .       ++|..+|..
T Consensus       107 ~-------~~l~~~i~~  116 (119)
T d2es7a1         107 W-------AELLTLMRS  116 (119)
T ss_dssp             H-------HHHHHHHHH
T ss_pred             H-------HHHHHHHHH
Confidence            6       777777654

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=1.2e-14  Score=130.29  Aligned_cols=85  Identities=15%  Similarity=0.185  Sum_probs=77.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTN--VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      ...+|+++||++||++|+.|.++|.+||++|++  ++|++||.+..+ .++.+|.+.++||+++|++|+.++++.|..+.
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~~-~la~~~~V~~~PT~~~~~~G~~v~~~~G~~~~  113 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSE-AIGDRFGVFRFPATLVFTGGNYRGVLNGIHPW  113 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHHH-HHHHHHTCCSCCEEEEEETTEEEEEECCCSCH
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCCH-HHHHhhccCcceeEEEEEcCcEeeeecCCCCH
Confidence            456899999999999999999999999999986  577899998776 88999999999999999999999999998666


Q ss_pred             ccCCCCHHHHHHHHH
Q psy12938        575 LGEGYFVEDVEAFLV  589 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~  589 (612)
                             ++|..+|.
T Consensus       114 -------~~l~~~i~  121 (132)
T d2hfda1         114 -------AELINLMR  121 (132)
T ss_dssp             -------HHHHHHHH
T ss_pred             -------HHHHHHHH
Confidence                   88888886

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.45  E-value=1.2e-13  Score=118.43  Aligned_cols=83  Identities=13%  Similarity=0.091  Sum_probs=72.3

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhh----c-CCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRS----H-TNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~----~-~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      .+|+.||++||++|+.|.+.|.+||.+    + ..+.|.++|.+..+ .++++|+++++||+++|++|+.+.+++|....
T Consensus        17 v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~-~l~~~~~V~~vPTi~i~~~G~~~~~~~G~~~~   95 (107)
T d1a8la2          17 VRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP-EWADQYNVMAVPKIVIQVNGEDRVEFEGAYPE   95 (107)
T ss_dssp             EEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH-HHHHHTTCCSSCEEEEEETTEEEEEEESCCCH
T ss_pred             eEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccc-ccccccccccceEEEEEeCCeEEEEEECCCCH
Confidence            567789999999999999999999864    2 35999999999877 78899999999999999999999999987554


Q ss_pred             ccCCCCHHHHHHHHHH
Q psy12938        575 LGEGYFVEDVEAFLVE  590 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~  590 (612)
                             +++..+|.+
T Consensus        96 -------~~~~~~i~~  104 (107)
T d1a8la2          96 -------KMFLEKLLS  104 (107)
T ss_dssp             -------HHHHHHHHH
T ss_pred             -------HHHHHHHHH
Confidence                   778777765

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=8e-14  Score=117.30  Aligned_cols=69  Identities=65%  Similarity=0.965  Sum_probs=62.3

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +++++|+|.|++.||||+|.|++.+.+....+.||||++|.|||+|+++|+|++||    |||.++.|++|..
T Consensus         1 le~~~V~L~k~~~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~   73 (94)
T d1wf8a1           1 LELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNF   73 (94)
T ss_dssp             EEEEEEEEECBTTBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHH
T ss_pred             CeEEEEEEEeCCCCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHH
Confidence            47899999999999999999976666666678899999999999999999999999    9999999998843

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.40  E-value=9e-14  Score=114.30  Aligned_cols=80  Identities=15%  Similarity=0.213  Sum_probs=68.6

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEG  578 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~  578 (612)
                      ..|+.||++||++|+.|.+.++++++.++. ++|+.++.+..+ .++++|+++++||+++|++|+    ++|..      
T Consensus         4 v~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~-~la~~~~V~~~Pt~~i~~~g~----~~G~~------   72 (85)
T d1fo5a_           4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENP-QKAMEYGIMAVPTIVINGDVE----FIGAP------   72 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSC-CTTTSTTTCCSSEEEETTEEE----CCSSS------
T ss_pred             eEEEEEECCCCcChHhhhhhccccccccccccccccccccccc-cccccCCceEeeEEEEECCcE----EECCC------
Confidence            578889999999999999999999999974 999999998776 788999999999999998875    34442      


Q ss_pred             CCHHHHHHHHHHC
Q psy12938        579 YFVEDVEAFLVEA  591 (612)
Q Consensus       579 ~~~~~lE~~L~~~  591 (612)
                       +.++|..+|.++
T Consensus        73 -~~~~l~~~i~~~   84 (85)
T d1fo5a_          73 -TKEALVEAIKKR   84 (85)
T ss_dssp             -SSHHHHHHHHHH
T ss_pred             -CHHHHHHHHHhc
Confidence             348888888764

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.39  E-value=5.5e-13  Score=116.79  Aligned_cols=88  Identities=14%  Similarity=0.296  Sum_probs=75.8

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      +..++|.||++||++|+.|.+.++.||+.+.  .++|++||.+..+ .+..+|.+.++|||++|++|+....+...    
T Consensus        27 ~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~-~l~~~~~v~~~Pti~~f~~g~~~~~~~y~----  101 (119)
T d2b5ea4          27 HDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ-DLCMEHNIPGFPSLKIFKNSDVNNSIDYE----  101 (119)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH-HHHHHTTCCSSSEEEEEETTCTTCEEECC----
T ss_pred             CCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchH-HHHHHhccccCCeEEEEECCEEeeeEEec----
Confidence            3479999999999999999999999999984  5999999999876 78899999999999999999888755422    


Q ss_pred             cCCCCHHHHHHHHHHC
Q psy12938        576 GEGYFVEDVEAFLVEA  591 (612)
Q Consensus       576 g~~~~~~~lE~~L~~~  591 (612)
                      | ..+.++|.+||.++
T Consensus       102 g-~~~~~~l~~fi~k~  116 (119)
T d2b5ea4         102 G-PRTAEAIVQFMIKQ  116 (119)
T ss_dssp             S-CCSHHHHHHHHHHH
T ss_pred             C-CCCHHHHHHHHHHh
Confidence            2 25779999999864

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.9e-13  Score=118.45  Aligned_cols=87  Identities=15%  Similarity=0.294  Sum_probs=74.2

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      ..|+|+||++||++|+.|.+.+..+++.+.    .++|++||.+..+ .+..+|.+.++|||++|++|+.+......   
T Consensus        25 k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~~Pt~~~~~~G~~~~~~~~~---  100 (120)
T d1meka_          25 KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES-DLAQQYGVRGYPTIKFFRNGDTASPKEYT---  100 (120)
T ss_dssp             SEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC-SSHHHHTCCSSSEEEEEESSCSSSCEECC---
T ss_pred             CcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch-hHHHHhCCccCCeEEEEECCeEeeeEEec---
Confidence            489999999999999999999999998873    5999999999776 78899999999999999999887644322   


Q ss_pred             ccCCCCHHHHHHHHHHC
Q psy12938        575 LGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~~~  591 (612)
                       | ..+.+.|..||.++
T Consensus       101 -g-~~~~~~l~~fi~~~  115 (120)
T d1meka_         101 -A-GREADDIVNWLKKR  115 (120)
T ss_dssp             -C-CSSHHHHHHHHHTT
T ss_pred             -C-CCCHHHHHHHHHHh
Confidence             1 34679999999865

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.1e-12  Score=115.13  Aligned_cols=94  Identities=17%  Similarity=0.264  Sum_probs=72.4

Q ss_pred             HHHHhhccCCCCceEEEEEeCC-------CChhhhhhHHHHHHHHhhcC-CceEEEecCCCch------hchhhhCCCCC
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSP-------SLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG------DHFSATFKTSG  552 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~-------~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~------d~~~~~~~i~~  552 (612)
                      +|.+.+.+ .++.+|+|+|||+       ||++|+.|.|.|.++++.|+ +++|++|+++..+      ..+..+|.+.+
T Consensus        11 e~~~~l~~-~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~   89 (119)
T d1woua_          11 EFHRAVEQ-HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTA   89 (119)
T ss_dssp             HHHHHHHT-TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCS
T ss_pred             HHHHHHHH-cCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEE
Confidence            45555654 3456899999995       99999999999999999997 5999999985321      14668899999


Q ss_pred             CcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        553 LPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       553 lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      +||+++|++|+.+.   +.     .....+.|+.||.
T Consensus        90 iPT~i~~~~g~~l~---~~-----~~~~~~ll~~~~~  118 (119)
T d1woua_          90 VPTLLKYGTPQKLV---ES-----ECLQANLVEMLFS  118 (119)
T ss_dssp             SSEEEETTSSCEEE---GG-----GGGCHHHHHHHHH
T ss_pred             EEEEEEEECCeEEe---ee-----ecCCHHHHHHHhc
Confidence            99999999997554   32     2234577777775

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.5e-13  Score=112.15  Aligned_cols=66  Identities=33%  Similarity=0.563  Sum_probs=57.0

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +++|+|.|++.||||+|.| |.+.....++.||||++|.|||+|+++|+|++||    |||.++.+++|..
T Consensus         2 v~~V~L~k~~~glG~~i~g-g~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e   71 (92)
T d2fe5a1           2 IMEVNLLKGPKGLGFSIAG-GIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEE   71 (92)
T ss_dssp             EEEEEEECCTTCSCEEEEE-CBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHH
T ss_pred             EEEEEEEECCCccCEEEEe-ecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHH
Confidence            6789999999999999999 3333333356799999999999999999999999    9999999998853

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.30  E-value=6.4e-12  Score=105.76  Aligned_cols=77  Identities=16%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY  579 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~  579 (612)
                      +.++.||++||++|+.+.+.|+++|..+++++|.++|.+..+ .++.+|.++++||+++  ||+.+.  +|.       .
T Consensus        17 ~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~-~l~~~~~I~~vPt~~~--ng~~~~--~G~-------~   84 (96)
T d1hyua4          17 FEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQ-NEITERNVMGVPAVFV--NGKEFG--QGR-------M   84 (96)
T ss_dssp             EEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCH-HHHHHTTCCSSSEEEE--TTEEEE--ESC-------C
T ss_pred             eEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccch-HHHhhcccccccEEEE--CCEEEE--ecC-------C
Confidence            677779999999999999999999999999999999999887 7889999999999854  999763  444       3


Q ss_pred             CHHHHHHHH
Q psy12938        580 FVEDVEAFL  588 (612)
Q Consensus       580 ~~~~lE~~L  588 (612)
                      +.++|.++|
T Consensus        85 ~~~~l~~~l   93 (96)
T d1hyua4          85 TLTEIVAKV   93 (96)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            447777665

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.5e-12  Score=115.92  Aligned_cols=66  Identities=23%  Similarity=0.261  Sum_probs=60.5

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .++++|+|.|+..||||+|.|   |.++..++.||||++|.|||+|+++|+|++||    |||.++.|++|..
T Consensus        28 ~~~~~V~l~k~~~glG~~i~g---g~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~e   97 (130)
T d1i16a_          28 ATVCTVTLEKMSAGLGFSLEG---GKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFE   97 (130)
T ss_dssp             EEEEEEEEETTSSSTTEEEEC---CCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHH
T ss_pred             CeEEEEEEEeCCCccCEEEee---ccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHH
Confidence            467889999999999999999   77776678899999999999999999999999    9999999999864

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.28  E-value=6.4e-12  Score=109.16  Aligned_cols=84  Identities=12%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEeeEEEecccc
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~  574 (612)
                      ..++|.||++||++|+.+.|.|++++.++. .+.|+.++.....   ..+..+|.+.++||+++|++|+.+.++.|.   
T Consensus        27 ~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~~gk~~~~~~G~---  103 (115)
T d1zmaa1          27 ETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSS---  103 (115)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTEEEEECCTT---
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEEEEECCEEEEEEcCC---
Confidence            369999999999999999999999999995 5788877643211   135689999999999999999999888765   


Q ss_pred             ccCCCCHHHHHHHHH
Q psy12938        575 LGEGYFVEDVEAFLV  589 (612)
Q Consensus       575 ~g~~~~~~~lE~~L~  589 (612)
                          .+.++|+.||.
T Consensus       104 ----~~~~el~~fla  114 (115)
T d1zmaa1         104 ----MSAQEIKDFAG  114 (115)
T ss_dssp             ----CCHHHHHHHHT
T ss_pred             ----CCHHHHHHHHc
Confidence                35599999984

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.27  E-value=3.3e-12  Score=104.93  Aligned_cols=79  Identities=14%  Similarity=0.169  Sum_probs=65.4

Q ss_pred             EEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938        501 VIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY  579 (612)
Q Consensus       501 Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~  579 (612)
                      .|+-||++||++|+.+.+.|++||++|+ .++|+++|.+..+ .++.+|+++++||+++++.|    +++|..       
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~-~l~~~~~V~~~Pt~~~~~~~----~~~G~~-------   71 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDR-EKAIEYGLMAVPAIAINGVV----RFVGAP-------   71 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCG-GGGGGTCSSCSSEEEETTTE----EEECSS-------
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccch-hhHHhcCceEeCEEEECCcE----EEEcCC-------
Confidence            3455999999999999999999999996 5999999999876 78899999999998874433    455553       


Q ss_pred             CHHHHHHHHHHC
Q psy12938        580 FVEDVEAFLVEA  591 (612)
Q Consensus       580 ~~~~lE~~L~~~  591 (612)
                      +.+.|.++|.++
T Consensus        72 ~~~~l~~~i~~~   83 (85)
T d1nhoa_          72 SREELFEAINDE   83 (85)
T ss_dssp             CCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh
Confidence            348888888763

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=1.5e-12  Score=109.16  Aligned_cols=64  Identities=31%  Similarity=0.509  Sum_probs=56.1

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCC--CccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGL--EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~--~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      |+.+|+|.|+..||||+|.|   |.+...  .+.||||++|.+||+|+++|+|++||    |||.++.|++|.
T Consensus         1 E~~~V~l~k~~~glG~~i~g---g~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~   70 (93)
T d1rgra_           1 EYEEITLERGNSGLGFSIAG---GTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHS   70 (93)
T ss_dssp             CEEEEEEECCSSCCSEEECC---CSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHH
T ss_pred             CCEEEEEEeCCCcCCEEEEe---ecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHH
Confidence            34579999999999999999   555433  56799999999999999999999999    999999999884

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.26  E-value=1.3e-12  Score=109.31  Aligned_cols=62  Identities=29%  Similarity=0.463  Sum_probs=55.0

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +++|+|.|+. .||||+|.|   |.+.. ++.||||++|.|||+|+++|+|++||    |||.++.|++|.
T Consensus         2 i~tV~l~k~~~~~lGi~i~g---g~~~~-~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~   68 (92)
T d2f0aa1           2 IITVTLNMEKYNFLGISIVG---QSNER-GDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSND   68 (92)
T ss_dssp             EEEEEECHHHHCSCCEEEEC---CCCTT-SCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred             EEEEEEEeCCCCccCEEEEc---cCCCC-CCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHH
Confidence            5789999975 789999999   55533 56799999999999999999999999    999999999984

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.6e-12  Score=110.99  Aligned_cols=66  Identities=32%  Similarity=0.557  Sum_probs=59.9

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .++++|+|.|+..||||+|.+   +.+...++.||||++|.|||+|+++|+|++||    |||+++.+++|..
T Consensus         7 g~~~~V~l~k~~~glG~~i~~---~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e   76 (110)
T d1um1a_           7 GYVFTVELERGPSGLGMGLID---GMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLR   76 (110)
T ss_dssp             CCEEEEEEECCTTCCCEEEEE---TTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHH
T ss_pred             CCEEEEEEEECCCCCCEEEEe---ecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHH
Confidence            468899999999999999999   66666677899999999999999999999999    9999999999843

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3e-12  Score=107.01  Aligned_cols=65  Identities=38%  Similarity=0.663  Sum_probs=57.3

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .++++|+|.|.. ||||+|.|   +.+...+..||||++|.|||+|+++|+|++||    |||.++.+++|..
T Consensus         3 pei~~v~l~~~~-glG~~i~g---~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e   71 (92)
T d1t2ma1           3 PEIITVTLKKQN-GMGLSIVA---AKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQER   71 (92)
T ss_dssp             CEEEEEEEECSS-SCCEEEEE---ECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHH
T ss_pred             CeEEEEEEeCCC-ccCEEEEe---ecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHH
Confidence            467889998864 89999999   66666667899999999999999999999999    9999999998843

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.8e-12  Score=108.79  Aligned_cols=66  Identities=29%  Similarity=0.398  Sum_probs=57.3

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCC-----CCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAG-----LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~-----~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .+.++|+|.|+..+|||+|+|   |.+..     ..+.||||++|.|||+|+++|+|++||    |||.++.+++|..
T Consensus         7 g~~~~V~l~k~~~~lGf~i~G---G~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~e   81 (107)
T d1uhpa_           7 GKSLTLVLHRDSGSLGFNIIG---GRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQ   81 (107)
T ss_dssp             SEEEEEEECCSSSCCSEEEEC---CCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHH
T ss_pred             CCEEEEEEEECCCccCEEEEe---cccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHH
Confidence            467889999999999999999   44322     246799999999999999999999999    9999999999853

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=8.2e-12  Score=105.71  Aligned_cols=67  Identities=34%  Similarity=0.474  Sum_probs=57.0

Q ss_pred             eEEEEEEeeCCCCcceEEEecc--CCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMG--VGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~--~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ++++|+|.|+..+|||+|.+..  .|.+....+.||||++|.|||+|+++|+|++||    |||.++.+++|.
T Consensus         4 ~~~~V~L~k~~~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~   76 (99)
T d1ozia_           4 DTFEVELAKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHK   76 (99)
T ss_dssp             CEEEEEEECCSSSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHH
T ss_pred             CEEEEEEEECCCCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHH
Confidence            5788999999999999999731  133344456799999999999999999999999    999999999884

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.5e-12  Score=105.71  Aligned_cols=64  Identities=36%  Similarity=0.588  Sum_probs=58.1

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ++++|+|.|++.||||+|.|   |.+...++.|+||++|.+||+|+++|+|++||    |||.++.+++|.
T Consensus         2 ~~~~V~l~K~~~~lG~~i~~---g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~   69 (88)
T d2fnea1           2 QCKSITLERGPDGLGFSIVG---GYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHE   69 (88)
T ss_dssp             EEEEEEECCBTTBTSEEEEE---EEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred             eEEEEEEEeCCCccCEEEEe---ccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHH
Confidence            46789999999999999999   66666667899999999999999999999999    999999999884

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.14  E-value=6.9e-12  Score=108.69  Aligned_cols=97  Identities=20%  Similarity=0.247  Sum_probs=70.5

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCc------eEEEecCCCchhchhhhCCCCCCcEEEEEE
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNV------KFVSVPLGCVGDHFSATFKTSGLPAMLAYR  560 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~v------kF~ki~~~~~~d~~~~~~~i~~lPtllvyk  560 (612)
                      .|.+.|.+  .+..++|.||++||++|+.|.+.+++||+.|...      ++...+.+.    ....+.+.++|||++|+
T Consensus        11 nF~~~v~~--~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~Pti~~f~   84 (116)
T d2djja1          11 NYNEIVLD--DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA----NDVPDEIQGFPTIKLYP   84 (116)
T ss_dssp             TTTTSSSC--TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT----SCCSSCCSSSSEEEEEC
T ss_pred             CHHHHHhc--CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccch----hhhcccccCCCEEEEEE
Confidence            34444543  3457999999999999999999999999988643      333444332    33578999999999999


Q ss_pred             CCEEeeEEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938        561 GGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL  594 (612)
Q Consensus       561 ~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l  594 (612)
                      +|+....+ .+   .| ..+.+.|..||.+++-.
T Consensus        85 ~g~~~~~~-~~---~g-~~~~~~l~~fi~~~~~~  113 (116)
T d2djja1          85 AGAKGQPV-TY---SG-SRTVEDLIKFIAENGKY  113 (116)
T ss_dssp             SSCTTSCC-CC---CC-CSCHHHHHHHHHHTSSS
T ss_pred             CCccCceE-Ee---cC-CCCHHHHHHHHHHccCc
Confidence            98754422 11   12 35789999999988754

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.6e-11  Score=110.36  Aligned_cols=99  Identities=17%  Similarity=0.276  Sum_probs=76.2

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcC----CceEEEecCCCchhchhhhCCCCCCcEEEEEEC
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHT----NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRG  561 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~----~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~  561 (612)
                      ..|.+.|.+.  ...|+|.||++||+.|+.|.+.|++||..|.    .+.|+.+|.+.   .+..+|.+.++|||++|++
T Consensus        20 ~nf~~~v~~~--~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~---~~~~~~~v~~~Ptl~~f~~   94 (140)
T d2b5ea1          20 KNHDEIVNDP--KKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE---NDVRGVVIEGYPTIVLYPG   94 (140)
T ss_dssp             TTHHHHHHCT--TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG---CCCSSCCCSSSSEEEEECC
T ss_pred             cCHHHHHhcC--CCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccc---hhccccccccCCeEEEEEC
Confidence            3466666542  3479999999999999999999999999874    47777777643   4568999999999999999


Q ss_pred             CEEeeEEEeccccccCCCCHHHHHHHHHHCCcc
Q psy12938        562 GEVVGNFVRLGEELGEGYFVEDVEAFLVEAGLL  594 (612)
Q Consensus       562 G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l  594 (612)
                      |+....+. +   -| ..+.+.|..||.+++..
T Consensus        95 g~~~~~~~-y---~G-~~t~~~l~~fi~~~~~~  122 (140)
T d2b5ea1          95 GKKSESVV-Y---QG-SRSLDSLFDFIKENGHF  122 (140)
T ss_dssp             TTSCCCCB-C---CS-CCCHHHHHHHHHHHCTT
T ss_pred             CEEcceeE-e---CC-CCCHHHHHHHHHHcCCC
Confidence            98766432 1   12 25789999999987543

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.11  E-value=2.6e-11  Score=101.56  Aligned_cols=67  Identities=22%  Similarity=0.258  Sum_probs=55.1

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+++|+|.|.. .+|||+|.|+...........||||++|.|||+|+++|+|++||    |||.++.+++|.
T Consensus         3 ~i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~   74 (94)
T d1ihja_           3 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQ   74 (94)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHH
T ss_pred             EEEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHH
Confidence            46789999975 68999999932222222356799999999999999999999999    999999999884

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.6e-11  Score=100.08  Aligned_cols=67  Identities=27%  Similarity=0.424  Sum_probs=55.7

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+.++|.|.|+..||||+|.|+........++.||||++|.|||+|+++| |++||    |||.++.+++|.
T Consensus         7 ~~~~~v~l~k~~~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~G-L~~GD~Il~VNg~~v~~~~~~   77 (97)
T d1x5qa1           7 EEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAG-VRVGDKLLEVNGVALQGAEHH   77 (97)
T ss_dssp             CEEEEEEEECSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHH
T ss_pred             CeEEEEEEEeCCCeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhc-ccCCCEEEEECCEECCCCCHH
Confidence            35678999999999999999932222222356799999999999999999 99999    999999999884

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=3.5e-11  Score=102.89  Aligned_cols=65  Identities=32%  Similarity=0.439  Sum_probs=55.9

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCC---CCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADA---GLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~---~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      ..+.|.|.|+..||||+|.|   |.+.   ...+.||||++|.|||+|+++|+|++||    |||+++.+++|..
T Consensus         7 ~~~~v~l~k~~~glGf~i~g---g~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~e   78 (105)
T d1whaa_           7 GRHVACLARSERGLGFSIAG---GKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDH   78 (105)
T ss_dssp             EEEEEEECCCTTCCSCEEEC---CTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHH
T ss_pred             CCEEEEEEECCCccCEEEEe---ccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHH
Confidence            34669999999999999999   4432   2356799999999999999999999999    9999999998853

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.2e-10  Score=100.95  Aligned_cols=86  Identities=14%  Similarity=0.219  Sum_probs=67.7

Q ss_pred             CceEEEEEeCCCChhhhhhHHHH---HHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEE-ECCEEee--EE
Q psy12938        498 HITVIAHLSSPSLPACRALNSSL---AELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAY-RGGEVVG--NF  568 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvy-k~G~~~~--~~  568 (612)
                      +.+|+|.||++||++|+.|.+.+   .++++.+.+..++.++.....   ..+..+|.+.++||+++| ++|+.+.  ++
T Consensus        22 gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~G~~~~~~~~  101 (117)
T d2fwha1          22 GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARV  101 (117)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEEEECTTSCBCGGGCB
T ss_pred             CCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEEEEEeCCCcEEecccc
Confidence            55899999999999999999987   666667778888888764321   145789999999999999 6788764  45


Q ss_pred             EeccccccCCCCHHHHHHHHHH
Q psy12938        569 VRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       569 vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      .|+       .+.+++.++|.+
T Consensus       102 ~G~-------~~~~~~~~~l~~  116 (117)
T d2fwha1         102 TGF-------MDAETFSAHLRD  116 (117)
T ss_dssp             CSC-------CCHHHHHHHHHH
T ss_pred             ccc-------CCHHHHHHHHhc
Confidence            555       345889999876

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.06  E-value=5.6e-11  Score=99.71  Aligned_cols=62  Identities=26%  Similarity=0.335  Sum_probs=55.1

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .+++|.|.|...||||+|.|   +.+   ...++||++|.+||+|+++|+|++||    |||.++.|++|..
T Consensus         3 ~i~tV~l~k~~~~lG~~i~g---~~~---~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~e   68 (95)
T d1n7ea_           3 IIYTVELKRYGGPLGITISG---TEE---PFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSE   68 (95)
T ss_dssp             CEEEEEEECTTSCCCEEEEC---CSS---TTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHH
T ss_pred             EEEEEEEEECCCcEeEEEEe---ccc---CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHH
Confidence            57899999999999999998   444   23479999999999999999999999    9999999998853

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=5.9e-11  Score=99.77  Aligned_cols=62  Identities=24%  Similarity=0.457  Sum_probs=52.5

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ++.+|.+.|.. ||||+|.|   |.+... ..+|||++|.|||+|+++|+|++||    |||.++.|++|.
T Consensus         8 ~~~~v~~~~~~-glG~~i~g---g~~~~~-~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~   73 (96)
T d1wi4a1           8 AFRVITVTKET-GLGLKILG---GINRNE-GPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFE   73 (96)
T ss_dssp             TEEEEEECCSS-CCCEEEEE---CSSSSS-CSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHH
T ss_pred             cEEEEEecCCC-ccCEEEEe---ccCCCC-CCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHH
Confidence            45567777754 89999999   665443 4589999999999999999999999    999999999884

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.05  E-value=9.1e-11  Score=103.08  Aligned_cols=93  Identities=11%  Similarity=0.138  Sum_probs=72.2

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChh------hhhhHHHHHHHHhhc--CCceEEEecCCCchhchhhhCCCCCCcEEE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPA------CRALNSSLAELSRSH--TNVKFVSVPLGCVGDHFSATFKTSGLPAML  557 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~------C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~d~~~~~~~i~~lPtll  557 (612)
                      ..|-+.|.+   +..++|+||+|||+.      |+.+.+.++.+|+.+  ..++|++||++..+ .+..+|.+.+.|||+
T Consensus        19 ~nf~~~l~~---~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~-~l~~~~~I~~yPTi~   94 (124)
T d1a8ya1          19 KNYKNVFKK---YEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDA-AVAKKLGLTEEDSIY   94 (124)
T ss_dssp             TTHHHHHHH---CSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSH-HHHHTTTCCSTTCEE
T ss_pred             HHHHHHHHh---CCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeeccc-chhhccccccCCcEE
Confidence            345444544   237999999999984      667777888888765  45999999999876 788999999999999


Q ss_pred             EEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        558 AYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       558 vyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +|++|+.+. +.      | ..+.+.|..||.+
T Consensus        95 ~f~~g~~~~-y~------G-~r~~~~l~~fi~~  119 (124)
T d1a8ya1          95 VFKEDEVIE-YD------G-EFSADTLVEFLLD  119 (124)
T ss_dssp             EEESSSEEE-CC------S-CCSHHHHHHHHHH
T ss_pred             EeccCccEE-ee------C-CCCHHHHHHHHHH
Confidence            999997653 22      2 3467889999865

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.5e-11  Score=101.26  Aligned_cols=63  Identities=27%  Similarity=0.486  Sum_probs=55.1

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .+.++|.|.|...||||+|.|   |.+   ...+|||+.|.+||+|+++|+|++||    |||.++.+++|..
T Consensus         8 ~~~~~V~l~k~~~glG~~i~g---g~~---~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e   74 (103)
T d1uepa_           8 YKELDVHLRRMESGFGFRILG---GDE---PGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRY   74 (103)
T ss_dssp             EEEECCEEESSSSSCCEEECC---CCS---TTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHH
T ss_pred             CEEEEEEEEeCCceEeEEEEe---ccc---CCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHH
Confidence            455679999999999999999   554   24579999999999999999999999    9999999998843

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=6.5e-11  Score=99.50  Aligned_cols=62  Identities=29%  Similarity=0.501  Sum_probs=49.8

Q ss_pred             EEEEEeeCC-CCcceEEEeccCCCCCC------CCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        314 LGVELMKGA-EGLGLSIIGMGVGADAG------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       314 ~~v~l~k~~-~glG~si~g~~~g~~~~------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+|+|.|.+ .+|||+|.|   |.+..      ....||||++|.|||+|+++|+|++||    |||.++.+++|.
T Consensus         3 r~V~l~k~~~~~lG~~i~g---g~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~   75 (96)
T d2fcfa1           3 RRVELWREPSKSLGISIVG---GRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHE   75 (96)
T ss_dssp             EEEEECCCC-CCCCEEEEC---CCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHH
T ss_pred             EEEEEEeCCCCCCCEEEEc---ccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHH
Confidence            469999986 789999998   43321      234599999999999999999999999    999999999984

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-10  Score=100.09  Aligned_cols=63  Identities=33%  Similarity=0.391  Sum_probs=54.2

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .+..|.|.|.. .||||+|.|   |.+.  ...+|||++|.+||+|+++|+|++||    |||.++.|++|..
T Consensus         8 ~~~~v~l~k~~~~~lG~~i~g---g~~~--~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~e   75 (107)
T d1x6da1           8 GIHVTILHKEEGAGLGFSLAG---GADL--ENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHD   75 (107)
T ss_dssp             TEEEEEEECCTTSCCSEEEEC---CSSS--SCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHH
T ss_pred             CcEEEEEEcCCCCccCEEEee---ccCC--CCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHH
Confidence            45668888876 689999999   5554  34689999999999999999999999    9999999998853

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=1.2e-10  Score=100.48  Aligned_cols=60  Identities=22%  Similarity=0.398  Sum_probs=53.0

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +++|+|.|.. .||||+|.+   +.+    ..||||++|.+||+|+++|+|++||    |||.++.+++|..
T Consensus         2 i~~V~l~k~~~~glG~~i~~---~~~----~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e   66 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKE---RVS----KPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDS   66 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEE---CSS----SSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHH
T ss_pred             eEEEEEEECCCCcEeEEEEe---ecC----CCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHH
Confidence            6789999877 789999999   433    3589999999999999999999999    9999999998753

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=1.3e-10  Score=101.91  Aligned_cols=99  Identities=11%  Similarity=0.195  Sum_probs=74.7

Q ss_pred             HHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhc----CCceEEEecCCCc----hhchhhhCCC--CCCcE
Q psy12938        486 RLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSH----TNVKFVSVPLGCV----GDHFSATFKT--SGLPA  555 (612)
Q Consensus       486 ~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~----~~vkF~ki~~~~~----~d~~~~~~~i--~~lPt  555 (612)
                      ..|-+.|.   ++..|+|.||++||..|+  .+.+.++|+++    +++.|.+|+.+..    ...+..+|.+  +++||
T Consensus        10 ~nFd~~v~---~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PT   84 (122)
T d2c0ga2          10 LSFEKTVE---RFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPS   84 (122)
T ss_dssp             TTHHHHHT---TSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCE
T ss_pred             HhHHHHHh---cCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCc
Confidence            34655554   345899999999999999  48888888763    6799999986532    1257788988  57999


Q ss_pred             EEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938        556 MLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       556 llvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~  593 (612)
                      +++|++|......+.+.+    +-+.+.|.+||.++.-
T Consensus        85 i~~f~~g~~~~~~~~~~g----~rt~~~l~~fv~~~~~  118 (122)
T d2c0ga2          85 IFLFKGNADEYVQLPSHV----DVTLDNLKAFVSANTP  118 (122)
T ss_dssp             EEEESSSSSSEEECCTTS----CCCHHHHHHHHHHHSS
T ss_pred             EEEEeCCcccccccccCC----CCCHHHHHHHHHHhcC
Confidence            999999987765554422    3578999999998754

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.1e-10  Score=96.97  Aligned_cols=62  Identities=24%  Similarity=0.292  Sum_probs=53.6

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +..+|.|.|.. .+|||+|.|   |.+   .+.||||.+|.|||+|+++|+|++||    |||.++.+++|..
T Consensus         4 q~r~V~l~k~~~~~lG~~i~g---g~~---~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~   70 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKG---GRE---NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDE   70 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEE---EGG---GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHH
T ss_pred             eEEEEEEEeCCCCccCEEEEc---ccc---CCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHH
Confidence            34679999976 679999999   554   34689999999999999999999999    9999999998843

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1e-10  Score=100.97  Aligned_cols=63  Identities=35%  Similarity=0.529  Sum_probs=53.6

Q ss_pred             EEEEEeeCC-CCcceEEEeccCCCCCC------CCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        314 LGVELMKGA-EGLGLSIIGMGVGADAG------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       314 ~~v~l~k~~-~glG~si~g~~~g~~~~------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .+|+|.|.. .+|||+|.|   |.+..      ..+.||||++|.|||+|+++|+|++||    |||+++.+++|..
T Consensus        11 ~~V~l~k~~~~~lG~~i~g---G~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~e   84 (111)
T d1ujua_          11 RELCIQKAPGERLGISIRG---GARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGE   84 (111)
T ss_dssp             SCEEEECCTTCCCCEEEEC---CSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHH
T ss_pred             EEEEEEeCCCCccCEEEec---cccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHH
Confidence            449999986 689999999   44322      245799999999999999999999999    9999999999853

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.2e-10  Score=100.63  Aligned_cols=63  Identities=29%  Similarity=0.467  Sum_probs=56.5

Q ss_pred             eeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        311 LTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       311 ~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .++++|.|.|...||||+|.|   |.+   .+.+|||++|.+||+|+++|+|++||    |||.++.|++|..
T Consensus        18 ~~~~~v~l~k~~~glG~~i~g---g~~---~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~e   84 (123)
T d1ueqa_          18 GTFLSTTLKKSNMGFGFTIIG---GDE---PDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHAD   84 (123)
T ss_dssp             SEEEEEEEECCTTSCSEEEEC---CSS---SSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHH
T ss_pred             CeEEEEEEEECCCeeCEEEEe---ecC---CCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHH
Confidence            467889999999999999999   555   24589999999999999999999999    9999999999854

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=1.6e-10  Score=98.08  Aligned_cols=60  Identities=27%  Similarity=0.509  Sum_probs=53.5

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +..+|+|.|+..||||+|.|   +.+    ..|+||++|.+||+|+++|+|++||    |||+++.+++|.
T Consensus         9 ~~r~V~l~k~~~glG~~i~~---~~~----~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~   72 (102)
T d1tp5a1           9 EPRRIVIHRGSTGLGFNIVG---GED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHE   72 (102)
T ss_dssp             SCEEEEEECTTSCCCEEEEE---CGG----GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHH
T ss_pred             CCEEEEEEeCCCcccEEEEe---ccC----CCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHH
Confidence            34679999999999999999   433    4589999999999999999999999    999999999884

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=9.1e-11  Score=100.76  Aligned_cols=54  Identities=24%  Similarity=0.433  Sum_probs=49.6

Q ss_pred             CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        322 AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       322 ~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+|||+|.|   |.++..++.||||++|.|||+|+++|+|++||    |||.++.+++|.
T Consensus        29 ~~~lG~~i~g---g~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~   86 (108)
T d2cssa1          29 GALLGLKVVG---GKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNE   86 (108)
T ss_dssp             SSCSSEEEEE---EEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHH
T ss_pred             CCCcCEEEec---cCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHH
Confidence            4689999999   77777678899999999999999999999999    999999999884

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.6e-11  Score=101.75  Aligned_cols=63  Identities=33%  Similarity=0.569  Sum_probs=56.6

Q ss_pred             ceeEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        310 KLTLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .++.++|+|.|+..||||+|.|   |.+.   ..+|||++|.+||+|+++|+|++||    |||.++.+++|.
T Consensus         9 ~~e~~~v~l~k~~~glG~~i~g---g~~~---~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~   75 (103)
T d1wfva_           9 DFDYFTVDMEKGAKGFGFSIRG---GREY---KMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHA   75 (103)
T ss_dssp             CSCCEECCEECCTTSSSBCCEE---ETTT---TEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHH
T ss_pred             CceEEEEEEEeCCCccCEEEEe---eccC---CCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHH
Confidence            4577889999999999999999   6653   4589999999999999999999999    999999999874

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.5e-10  Score=95.50  Aligned_cols=65  Identities=23%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             eeEEEEEEeeCC-CCcceEEEeccCCCCCCC-CccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        311 LTLLGVELMKGA-EGLGLSIIGMGVGADAGL-EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       311 ~~~~~v~l~k~~-~glG~si~g~~~g~~~~~-~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .+..+|.|.|.+ .||||+|.|   |.+... ...|+||++|.+||+|+++|+|++||    |||.++.+++|.
T Consensus         7 ~e~~~V~l~~~~~~~lG~~i~g---g~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~   77 (99)
T d1x5ra1           7 TETTEVVLCGDPLSGFGLQLQG---GIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTME   77 (99)
T ss_dssp             SEEEEEEECCCTTTCCCEEEEC---CSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHH
T ss_pred             eeeEEEEEEcCCCCCcCEEEEE---eccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHH
Confidence            466779999977 689999999   544333 35689999999999999999999999    999999999884

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3e-10  Score=93.13  Aligned_cols=59  Identities=22%  Similarity=0.360  Sum_probs=50.0

Q ss_pred             EEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        316 VELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       316 v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      |.|.|.. .+|||+|.++  +.++  ...+|||++|.|||+|+++|+|++||    |||.++.+++|.
T Consensus         2 V~l~k~~g~~LGi~i~~~--~~~~--~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~   65 (85)
T d1x45a1           2 VFIEKQKGEILGVVIVES--GWGS--ILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLS   65 (85)
T ss_dssp             EEEECCTTSCCCEEEECC--TTTS--SSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHH
T ss_pred             eEEEeCCCCccCEEEEeC--CCCC--CCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHH
Confidence            7888876 6899999874  2222  24589999999999999999999999    999999999884

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2e-10  Score=98.28  Aligned_cols=64  Identities=17%  Similarity=0.245  Sum_probs=54.9

Q ss_pred             cceeEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcc-cCCccccc----CCceeeeecccc
Q psy12938        309 EKLTLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAAR-DGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       309 ~~~~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~-dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +..++++|.|.|+. .+|||+|.|   |.+   ...+|||++|.+||+|++ +|+|++||    |||.++.+++|.
T Consensus         5 P~~~~~~v~l~~~~~g~lG~~l~g---g~d---~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~   74 (106)
T d2cs5a1           5 PHDNLVLIRMKPDENGRFGFNVKG---GYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHD   74 (106)
T ss_dssp             CSSCCEEEEECCCSSSCCSEEEEE---EGG---GTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHH
T ss_pred             CCCcEEEEEEEeCCCCCccEEEEe---eec---CCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHH
Confidence            34467889999987 459999999   554   346899999999999998 79999999    999999999884

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=2.6e-10  Score=96.23  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=53.7

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..++|+|.|.. .||||++.+   +.+.. ...||||++|.|||+|+++|+|++||    |||.++.|++|.
T Consensus        10 ~~~~V~l~k~~~~~lG~~v~~---~~~~~-~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~   77 (99)
T d1p1da2          10 GTFHVKLPKKHSVELGITISS---PSSRK-PGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSME   77 (99)
T ss_dssp             SCEEEEECCCSSCCCCCEEEC---SCSSS-TTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHH
T ss_pred             CcEEEEEEECCCCccCEEEEe---cCCCC-CCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHH
Confidence            46779999865 689999999   44433 23589999999999999999999999    999999999884

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.8e-10  Score=101.44  Aligned_cols=63  Identities=29%  Similarity=0.479  Sum_probs=52.7

Q ss_pred             eeEEEEEEeeC--CCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccc
Q psy12938        311 LTLLGVELMKG--AEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGV  377 (612)
Q Consensus       311 ~~~~~v~l~k~--~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~  377 (612)
                      .++..|+|.|.  ..+|||+|.|   +.+.. ++.||||++|.|||+|+++|+|++||    |||+++.++++
T Consensus        18 ~e~~~V~l~k~~~~~~lG~~i~~---~~~~~-~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~~~   86 (124)
T d1wh1a_          18 LELEEVDLYRMNSQDKLGLTVCY---RTDDE-DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNREE   86 (124)
T ss_dssp             CEECCBCCCCSSTTCCCCEEEEC---CCCCS-SCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCSHHH
T ss_pred             ceeEEEEEEECCCCCcccEEEEe---cCCCC-CCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCCHHH
Confidence            35556889884  3689999999   44432 56799999999999999999999999    99999998765

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.1e-10  Score=95.72  Aligned_cols=59  Identities=29%  Similarity=0.347  Sum_probs=52.2

Q ss_pred             EEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        315 GVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       315 ~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .|.+.|...+|||+|.|   |.+.  ...++||++|.|||+|+++|+|++||    |||+++.+++|.
T Consensus         9 vv~~~k~~~~lG~~i~g---g~~~--~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~   71 (103)
T d1ufxa_           9 LVRVKKSAATLGIAIEG---GANT--RQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHR   71 (103)
T ss_dssp             EEEEECCSSSCCEEEEC---BTTS--SCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHH
T ss_pred             EEEEEeCCCccCEEEee---ecCC--CCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHH
Confidence            38888999999999999   5554  33579999999999999999999999    999999999884

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=5.8e-10  Score=97.68  Aligned_cols=65  Identities=18%  Similarity=0.149  Sum_probs=55.3

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCC-CccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGL-EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~-~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +...|.|.|+. .||||+|.|   |.+... ...+|||++|.|||+|+++|+|++||    |||.++.+++|..
T Consensus        15 ~~~ev~l~k~~~~glGf~i~g---g~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e   85 (122)
T d1v5qa_          15 ETTEVVLTADPVTGFGIQLQG---SVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE   85 (122)
T ss_dssp             EEEEEEECCCSSSSSCEEEEC---CSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHH
T ss_pred             eeEEEEEecCCCCccCEEEec---ccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHH
Confidence            56679998876 689999999   554433 34689999999999999999999999    9999999998853

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=2.2e-10  Score=101.19  Aligned_cols=62  Identities=35%  Similarity=0.612  Sum_probs=52.4

Q ss_pred             EEEEEee-CCCCcceEEEeccCCCCCCC-CccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        314 LGVELMK-GAEGLGLSIIGMGVGADAGL-EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       314 ~~v~l~k-~~~glG~si~g~~~g~~~~~-~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ++|.|.| +..||||+|+|   |.+... .+.+|||++|.|||+|+++|+|++||    |||.++.+++|.
T Consensus        27 ~~v~l~~~~~~glG~~i~g---g~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~   94 (127)
T d1wg6a_          27 LEIPLNDSGSAGLGVSLKG---NKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNH   94 (127)
T ss_dssp             EEEECSSSTTTCCCCEEEE---EEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHH
T ss_pred             EEEEEccCCCCcEeEEEEe---ecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHH
Confidence            4577755 45789999999   555444 35699999999999999999999999    999999999983

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1e-09  Score=91.00  Aligned_cols=58  Identities=21%  Similarity=0.326  Sum_probs=51.5

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      ..|+|.|+..||||+|.|   +.    ...++||..|.|||+|++.| |++||    |||.++.+++|..
T Consensus         5 r~v~l~k~~~g~Gf~i~~---~~----~~~~~~V~~V~~g~~A~~aG-l~~GD~Il~VNg~~v~~~t~~e   66 (91)
T d1g9oa_           5 RLCCLEKGPNGYGFHLHG---EK----GKLGQYIRLVEPGSPAEKAG-LLAGDRLVEVNGENVEKETHQQ   66 (91)
T ss_dssp             EEEEEECBTTBCCEEEEE---CT----TCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             EEEEEEECCCeeeEEEEe---cC----CCCCEEEEEEcCCCHHHHcC-CCCCCEEEEECCEECCCCCHHH
Confidence            459999999999999999   43    34589999999999999999 99999    9999999999843

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.9e-09  Score=91.45  Aligned_cols=64  Identities=30%  Similarity=0.394  Sum_probs=49.3

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCC--CCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAG--LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~--~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .++|.+.|++ +|||+|.|+......+  .++.||||++|.|||+|+  ++|++||    |||.++.+++|..
T Consensus        12 ~v~v~~~~~~-~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~--~~L~~GD~Il~VNg~~v~~~t~~e   81 (103)
T d2h3la1          12 EIRVRVEKDP-ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPAS--KLLQPGDKIIQANGYSFINIEHGQ   81 (103)
T ss_dssp             EEEEEEECSS-SCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTT--TTCCTTCEEEEETTEECSSCCHHH
T ss_pred             EEEEEEccCC-CCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHH--hccCCCCEEEEECCEECCCCCHHH
Confidence            4567777764 7999999931111111  246799999999999995  6799999    9999999999853

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=1.4e-09  Score=90.27  Aligned_cols=61  Identities=25%  Similarity=0.363  Sum_probs=52.9

Q ss_pred             ceeEEEEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        310 KLTLLGVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       310 ~~~~~~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..++..|.|.|..  .+|||+|.+   +.+    +.|+||+.|.+||+|+++| |++||    |||.++.+++|.
T Consensus         4 p~e~~~v~l~k~~~~~~~Gf~i~~---~~~----~~g~~V~~V~~~g~A~~~g-L~~GD~Il~VNg~~v~~~t~~   70 (91)
T d1m5za_           4 PVELHKVTLYKDSGMEDFGFSVAD---GLL----EKGVYVKNIRPAGPGDLGG-LKPYDRLLQVNHVRTRDFDCC   70 (91)
T ss_dssp             CCEEEEEEEECCTTCSSSSEEEEE---CTT----SSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHH
T ss_pred             CCceEEEEEEECCCCCceeEEEec---cCC----CCCEEEEEECCCChhHhCc-CCCCCEEEEECCEECCCCCHH
Confidence            3577889999975  589999998   443    3589999999999999999 99999    999999999874

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.1e-09  Score=90.16  Aligned_cols=57  Identities=23%  Similarity=0.297  Sum_probs=50.2

Q ss_pred             EEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        315 GVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       315 ~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .|+|.|.+ .+|||+|.+   +     .+.++||+.|.+||+|+++|+|++||    |||.++.|++|..
T Consensus         4 ~V~l~k~~~~~lG~~l~~---~-----~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~   65 (88)
T d1kwaa_           4 LVQFQKNTDEPMGITLKM---N-----ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQ   65 (88)
T ss_dssp             EEEEEECSSSCCCEEEEC---S-----CGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHH
T ss_pred             EEEEEeCCCCCccEEEEE---c-----CCCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHH
Confidence            48999976 689999988   3     23489999999999999999999999    9999999998753

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=1.1e-09  Score=95.35  Aligned_cols=58  Identities=24%  Similarity=0.354  Sum_probs=49.5

Q ss_pred             EEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       316 v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +...+...+|||+|.|   |.+++.  .+|||++|.|||+|+++|+|++||    |||.++.|++|.
T Consensus        21 ~~~~~~~~~lG~~i~g---g~d~~~--~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~   82 (118)
T d1v6ba_          21 LLRIKKEGSLDLALEG---GVDSPV--GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLA   82 (118)
T ss_dssp             EEEEESCSCCCCEEEE---BTTSSS--CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHH
T ss_pred             EEEecCCCCCCEEEEe---eecCCC--CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHH
Confidence            4445556789999999   666543  379999999999999999999999    999999999884

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=9.9e-10  Score=93.47  Aligned_cols=59  Identities=27%  Similarity=0.395  Sum_probs=51.9

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ..+|+|.|.+ .+|||+|.|   |.+   .+.||||+.|.+||+|+++| |++||    |||+++.+++|.
T Consensus        16 pr~V~l~r~~~~~lGf~i~g---g~~---~~~gi~V~~V~~~s~A~~~G-L~~GD~Il~VNg~~v~~~~~~   79 (104)
T d1wi2a_          16 PRIVTLKKPPGAQLGFNIRG---GKA---SQLGIFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHS   79 (104)
T ss_dssp             CEEEEECCCTTCCCSEEEEC---CSS---SCCCCEEEEECTTSHHHHHT-CCTTCEEEEETTEECSSCCHH
T ss_pred             CEEEEEEeCCCCCcceEEEc---ccc---CCCCEEEEEECCCChhHhcc-cccCCEEEEECCEECCCCCHH
Confidence            3569999986 689999999   555   34689999999999999999 99999    999999999884

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.3e-09  Score=94.15  Aligned_cols=65  Identities=22%  Similarity=0.249  Sum_probs=54.0

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCC----CccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGL----EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~----~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +..+|.|.|.+ .+|||+|.|   +.+...    ...++||++|.|||+|+++|+|++||    |||.++.+++|..
T Consensus        10 ~~~~V~l~r~~~~~lGf~l~~---g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e   83 (114)
T d1uewa_          10 QTSDVVIHRKENEGFGFVIIS---SLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHAD   83 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEEC---CCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHH
T ss_pred             eeEEEEEEeCCCCCCCEEEee---ecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHH
Confidence            45679998876 689999999   333322    24589999999999999999999999    9999999998743

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.83  E-value=4.6e-10  Score=94.54  Aligned_cols=61  Identities=25%  Similarity=0.422  Sum_probs=50.6

Q ss_pred             EEEEeeCC--CCcceEEEeccCCCCCC------CCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        315 GVELMKGA--EGLGLSIIGMGVGADAG------LEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       315 ~v~l~k~~--~glG~si~g~~~g~~~~------~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +|.|.|..  .+|||+|.|   |.+..      ....||||+.|.|||+|+++|+|++||    |||.++.+++|.
T Consensus         5 ~V~L~k~~~~~~lG~~i~g---g~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~   77 (98)
T d1rzxa_           5 RVRLLKHGSDKPLGFYIRD---GTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLD   77 (98)
T ss_dssp             EEEEECCCSSSCCSEEEEE---EEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHH
T ss_pred             EEEEEECCCCCcccEEEec---ccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHH
Confidence            48888854  689999999   33211      135689999999999999999999999    999999999874

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.7e-09  Score=95.39  Aligned_cols=61  Identities=28%  Similarity=0.440  Sum_probs=53.2

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +..+|+|.|+. .||||+|.|   |.+.   +.||||++|.|||+|+++| |++||    |||+++.+++|..
T Consensus        20 ~~~~v~l~~~~~~~lGf~i~g---g~~~---~~gv~V~~V~~g~~A~~~g-L~~GD~Il~INg~~v~~~s~~e   85 (128)
T d1uf1a_          20 DEKKVNLVLGDGRSLGLTIRG---GAEY---GLGIYITGVDPGSEAEGSG-LKVGDQILEVNGRSFLNILHDE   85 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEEC---CTTT---TCCCEEEEECTTCHHHHHT-CCTTCEEEEETTEECSSCCHHH
T ss_pred             CeEEEEEEECCCCccCEEEEe---eccC---CCCEEEEEECCCChHHhcC-CCCCCEEEEECCEECCCCCHHH
Confidence            44679999987 689999999   6663   4589999999999999999 99999    9999999998853

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=4.5e-09  Score=87.40  Aligned_cols=51  Identities=31%  Similarity=0.428  Sum_probs=46.2

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP   98 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~   98 (612)
                      ++-..|+|++||+|++|||.++.+++|++|+.+|+++++.|+|+|.|.++|
T Consensus        43 ~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~v~L~v~R~~pP   93 (93)
T d1rgra_          43 AAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRLYVMRRKPP   93 (93)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTTTEEEEEEECSCCC
T ss_pred             hHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCCC
Confidence            344567899999999999999999999999999999999999999998764

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=2.4e-09  Score=90.97  Aligned_cols=63  Identities=22%  Similarity=0.348  Sum_probs=52.8

Q ss_pred             eeEEEEEEeeCC-CCcceEEEeccCCCCCCC---CccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        311 LTLLGVELMKGA-EGLGLSIIGMGVGADAGL---EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       311 ~~~~~v~l~k~~-~glG~si~g~~~g~~~~~---~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ++.++|+|.|.. .||||+|.|   |.+...   ...||||++|.|||+|+  |+|++||    |||.++.|++|.
T Consensus         6 ~e~~tV~l~k~~~~~~G~~i~g---g~~~~~~~~~~~~i~V~~v~~gs~A~--~~L~~GD~Il~INg~~v~~~~~~   76 (104)
T d2csja1           6 WEQYTVTLQKDSKRGFGIAVSG---GRDNPHFENGETSIVISDVLPGGPAD--GLLQENDRVVMVNGTPMEDVLHS   76 (104)
T ss_dssp             EEEEEEEEECCSSSTTCEEEEC---CSSCCCCSSCCCBCEEEEECTTSSHH--HHBCTTCEEEEESSCBCBTCCHH
T ss_pred             CccEEEEEEeCCCCCcCEEEEc---ccCCCccccCCCCEEEEEECCCChhh--cCCCCCCEEEEECCEECCCCCHH
Confidence            456789999987 689999999   444322   46799999999999994  7799999    999999999874

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.77  E-value=1.2e-09  Score=92.34  Aligned_cols=59  Identities=25%  Similarity=0.356  Sum_probs=52.1

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .+..|.|.|.. .+|||+|.+         +..||||++|.+||+|+++|+|++||    |||+++.|++|..
T Consensus        18 ~i~~V~l~k~~~~~lG~~v~~---------~~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~   81 (100)
T d1va8a1          18 TVKIVRIEKARDIPLGATVRN---------EMDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNE   81 (100)
T ss_dssp             ECEEEEEEECTTCCCCEEEEE---------CSSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHH
T ss_pred             eEEEEEEEeCCCCCccEEEEe---------cCCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHH
Confidence            56679999986 679999998         33489999999999999999999999    9999999998853

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2e-09  Score=93.47  Aligned_cols=61  Identities=20%  Similarity=0.495  Sum_probs=50.6

Q ss_pred             EEEeeCC-------CCcceEEEeccCCCCC--CCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        316 VELMKGA-------EGLGLSIIGMGVGADA--GLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       316 v~l~k~~-------~glG~si~g~~~g~~~--~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +.|.|..       .||||+|.|   |.+.  ..++.||||++|.+||+|+++|+|++||    |||+++.+++|..
T Consensus        16 v~l~r~~~~~~~~g~glG~~i~g---g~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e   89 (117)
T d1ujda_          16 IKITRDSKDHTVSGNGLGIRIVG---GKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEE   89 (117)
T ss_dssp             EEECCCSSSSCSSCCSCSEEEEE---EEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHH
T ss_pred             EEEEecccccccCCcccCEEEec---cccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHH
Confidence            5565553       579999999   4443  3356799999999999999999999999    9999999998853

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=1.2e-09  Score=96.07  Aligned_cols=59  Identities=25%  Similarity=0.385  Sum_probs=53.9

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      ++++|+|.|+..||||+|.+         +..+|||.+|.|||+|+++|+|++||    |||.++.|++|..
T Consensus        27 ~~~~v~l~~g~~GlG~~i~~---------~~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e   89 (126)
T d1wifa_          27 KVIQTKLTVGNLGLGLVVIQ---------NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLRE   89 (126)
T ss_dssp             CEEEEEEECCTTCCCCCEEE---------ETTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHH
T ss_pred             cEEEEEEeeCCCcEEEEEEe---------cCCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHH
Confidence            57889999999999999998         34579999999999999999999999    9999999999853

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=5.5e-09  Score=87.06  Aligned_cols=50  Identities=68%  Similarity=0.917  Sum_probs=45.7

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++-.+|+|++||+|++|||+++.+++|++|+.+|+++++.|+|+|.|.++
T Consensus        45 ~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~kP   94 (94)
T d1wf8a1          45 AAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREKP   94 (94)
T ss_dssp             HHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCCSEEEEEEEEECC
T ss_pred             hHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            44456789999999999999999999999999999999999999999764

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=9.5e-09  Score=91.03  Aligned_cols=76  Identities=16%  Similarity=0.087  Sum_probs=57.1

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCC---------------------chhchhhhCCCCCCcE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGC---------------------VGDHFSATFKTSGLPA  555 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~---------------------~~d~~~~~~~i~~lPt  555 (612)
                      ++.+|||+||++||++|+...|.|++++.++..+-++.++.+.                     .+ .+...|.+.++|+
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~v~~~P~   97 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDG-MLGLDLGVYGAPE   97 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSC-HHHHHHTCCSBSE
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhhhhhhcccccccchhhhHHHHHHcCCccceeecccch-hHHHhcccCCcce
Confidence            3558999999999999999999999998765443333333211                     11 2457799999997


Q ss_pred             EEEE-ECCEEeeEEEeccc
Q psy12938        556 MLAY-RGGEVVGNFVRLGE  573 (612)
Q Consensus       556 llvy-k~G~~~~~~vg~~~  573 (612)
                      ++++ ++|+++.++.|...
T Consensus        98 ~~liD~~G~i~~~~~G~~~  116 (136)
T d1z5ye1          98 TFLIDGNGIIRYRHAGDLN  116 (136)
T ss_dssp             EEEECTTSCEEEEEESCCC
T ss_pred             EEEEcCCCEEEEEEEcCCC
Confidence            7777 99999999998643

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=4.1e-09  Score=89.02  Aligned_cols=58  Identities=26%  Similarity=0.390  Sum_probs=49.2

Q ss_pred             EEEEee-CCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        315 GVELMK-GAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       315 ~v~l~k-~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .|.+.+ +..||||+|.|   |.+   ...||||++|.+||+|++.| |++||    |||.++.+++|..
T Consensus        11 ~v~i~~~~~~glG~~i~~---g~~---~~~gi~V~~V~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~   73 (101)
T d1x5na1          11 KVFISLVGSRGLGCSISS---GPI---QKPGIFISHVKPGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKE   73 (101)
T ss_dssp             EEEECCCSSCCCCEEEEE---CCS---SSCSEEEEEECTTSTTTTTT-CCTTCEEEEETTEETTSCCTTH
T ss_pred             EEEEEeeCCCcccEEEec---cCC---CCCCEEEEEECCCChHHhCC-CCcccEEEEECCEECCCCCHHH
Confidence            466655 45899999999   555   35689999999999999988 99999    9999999999843

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.4e-09  Score=93.06  Aligned_cols=61  Identities=25%  Similarity=0.266  Sum_probs=52.5

Q ss_pred             EEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        314 LGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       314 ~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +.|+|.|.. .+|||+|.+   +.+.  +..||||+.|.|||+|+++|+|++||    |||+++.+++|..
T Consensus        17 ~~V~l~k~~~~~lGi~i~~---~~~~--~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~   82 (117)
T d1v62a_          17 LMVEIVKTPGSALGISLTT---TSLR--NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLE   82 (117)
T ss_dssp             EEEEEECCTTCCCCCEEEE---ECCS--SSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHH
T ss_pred             EEEEEEcCCCCCcCEEEEe---eccC--CCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHH
Confidence            448999876 579999999   4443  35689999999999999999999999    9999999998754

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=4e-09  Score=88.97  Aligned_cols=81  Identities=15%  Similarity=0.284  Sum_probs=67.6

Q ss_pred             CCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccc
Q psy12938        496 PRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEEL  575 (612)
Q Consensus       496 ~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~  575 (612)
                      ....++|+.||++||+.|+.+.+.|++++.+|+ .+|+++|.+..+ .+.++|.++ +|+|++  ||+.+  +.|     
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~-~~~v~vd~~~~~-~l~~~y~~~-VPvl~i--dg~~~--~~g-----   80 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI-LQEVDITLPENS-TWYERYKFD-IPVFHL--NGQFL--MMH-----   80 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE-EEEEETTSSTTH-HHHHHSSSS-CSEEEE--SSSEE--EES-----
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc-eEEEecccccCH-HHHHHhccc-CCceee--cCceE--EeC-----
Confidence            456689999999999999999999999999987 689999998776 788999988 897754  77765  333     


Q ss_pred             cCCCCHHHHHHHHHH
Q psy12938        576 GEGYFVEDVEAFLVE  590 (612)
Q Consensus       576 g~~~~~~~lE~~L~~  590 (612)
                        .|..++|+++|.+
T Consensus        81 --~~d~~~L~~~L~~   93 (100)
T d1wjka_          81 --RVNTSKLEKQLRK   93 (100)
T ss_dssp             --SCCHHHHHHHHHS
T ss_pred             --CCCHHHHHHHHHH
Confidence              3566999999975

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3e-09  Score=92.39  Aligned_cols=59  Identities=29%  Similarity=0.425  Sum_probs=51.7

Q ss_pred             eEEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      ++..|.|.|+..||||+|.|   +.     +.||||++|.+||+|+++| |++||    |||+++.+++|..
T Consensus        19 ~~r~v~l~k~~~glG~~i~g---g~-----~~gi~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~   81 (117)
T d1uita_          19 EPRHVKVQKGSEPLGISIVS---GE-----KGGIYVSKVTVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQ   81 (117)
T ss_dssp             CCEEEEEECSSCCCCEEEEE---CT-----TSCEEEEEECTTSHHHHHT-CCTTCEECEETTEETTTCCHHH
T ss_pred             CCEEEEEEeCCCccCEEEEc---cC-----CCCEEEEEEecCChHHhCC-CCCCCEeeeECCcccCCCCHHH
Confidence            45679999999999999999   43     3489999999999999987 99999    9999999998754

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.4e-09  Score=90.58  Aligned_cols=61  Identities=26%  Similarity=0.438  Sum_probs=51.6

Q ss_pred             eEEEEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      ++..|.|.|..  .||||+|.|   |.+.   ..||||..|.+||+|+++| |++||    |||.++.+++|..
T Consensus         8 ~~~~v~l~r~~~~~glG~~i~g---g~~~---~~~i~V~~v~~gg~A~~~g-L~~GD~Il~ING~~v~~~~~~~   74 (101)
T d1ueza_           8 EVRLVSLRRAKAHEGLGFSIRG---GSEH---GVGIYVSLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAE   74 (101)
T ss_dssp             CCEEECCCCCCTTTCSSEEEEE---CTTT---TCCEEEEEECTTSHHHHHT-CCSSCCEEEETTEECSSCCHHH
T ss_pred             CEEEEEEEECCCCCeeCEEEEe---cccC---CCCEEEEEECCCChHHhcC-CCCCcEEEEECCEECCCCCHHH
Confidence            45667787654  689999999   6653   4489999999999999999 99999    9999999998743

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.5e-09  Score=85.82  Aligned_cols=52  Identities=19%  Similarity=0.325  Sum_probs=47.4

Q ss_pred             EEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        316 VELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       316 v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      |+|.|+..||||+|.|          +.++||++|.+||+|++.| |++||    |||.++.+++|.
T Consensus         1 v~l~r~~~g~Gf~l~~----------~~~~~V~~V~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~   56 (77)
T d2f5ya1           1 ITIPRGKDGFGFTICC----------DSPVRVQAVDSGGPAERAG-LQQLDTVLQLNERPVEHWKCV   56 (77)
T ss_dssp             EEEECBTTBTSEEEEC----------SSSCEEEEECTTSHHHHHT-CCTTCEEEEETTEECTTCCHH
T ss_pred             CEEecCCCcccEEEEC----------CCCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHH
Confidence            6789999999999987          2369999999999999999 99999    999999999874

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=2.7e-09  Score=87.31  Aligned_cols=58  Identities=21%  Similarity=0.253  Sum_probs=49.0

Q ss_pred             EEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        314 LGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       314 ~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      ++|+|.+ +.+|||+|.|   |.+   ...|+||+.|.|||+|++ ++|++||    |||.++.+++|..
T Consensus         3 ~~V~l~~-~~~~Gf~i~g---g~~---~~~~v~V~~v~~gs~A~~-~~L~~GD~Il~VNg~~v~~~s~~e   64 (85)
T d1rgwa_           3 YSVTLTG-PGPWGFRLQG---GKD---FNMPLTISRITPGSKAAQ-SQLSQGDLVVAIDGVNTDTMTHLE   64 (85)
T ss_dssp             EEEEECC-SSCCCEEECC---CGG---GTSCCBEEEECTTSHHHH-SSCCCCSBEEEETTEECTTCCHHH
T ss_pred             EEEEecC-CCCCCEEEEe---ecC---CCCCEEEEEecCCChHHh-CCCCCCCEEEEECCEECCCCCHHH
Confidence            6789976 5689999999   555   245799999999999986 4599999    9999999998843

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.2e-08  Score=87.14  Aligned_cols=50  Identities=24%  Similarity=0.383  Sum_probs=45.4

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++..+|+|++||+|++|||+++.+++|++|+++|+++...|+|+|.|...
T Consensus        53 ~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~~~~v~l~v~r~~~  102 (107)
T d1uhpa_          53 PAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQVLRRTS  102 (107)
T ss_dssp             HHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCS
T ss_pred             HHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhCCCcEEEEEEECCC
Confidence            34456789999999999999999999999999999999999999999765

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=1.1e-08  Score=85.94  Aligned_cols=50  Identities=30%  Similarity=0.448  Sum_probs=45.3

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++..+|+|++||+|++|||+++.++||++|+.+|++++..|+|+|.|...
T Consensus        49 ~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~~~~v~L~v~R~~~   98 (99)
T d1ozia_          49 AAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLLLEKGQV   98 (99)
T ss_dssp             HHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHSCSEEEEEEECCCC
T ss_pred             hHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCCCCeEEEEEEeCCC
Confidence            44456789999999999999999999999999999999999999998654

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=5e-09  Score=88.15  Aligned_cols=49  Identities=20%  Similarity=0.380  Sum_probs=44.5

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      .+-..|+|++||+|++|||+++.+++|++|+++|+++++.|+|+|.|..
T Consensus        50 ~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~v~L~V~r~~   98 (99)
T d1p1da2          50 VAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDE   98 (99)
T ss_dssp             HHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             hhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            3444678999999999999999999999999999999999999999864

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=2.1e-08  Score=83.62  Aligned_cols=49  Identities=20%  Similarity=0.320  Sum_probs=44.8

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-.+|+|++||+|++|||+++.+++|++|+.+|+++++.|+|+|.|...
T Consensus        41 A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~r~~~   89 (95)
T d1n7ea_          41 AERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTD   89 (95)
T ss_dssp             HHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred             HHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            3346689999999999999999999999999999999999999998765

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.2e-09  Score=85.06  Aligned_cols=56  Identities=23%  Similarity=0.247  Sum_probs=49.0

Q ss_pred             EEEEEEeeCC-CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        313 LLGVELMKGA-EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       313 ~~~v~l~k~~-~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      ...|.|.|+. .+|||+|.+         .+.|+||++|.+||+|++.| |++||    |||.++.++++.
T Consensus         3 pr~v~l~k~~~~~lG~~l~~---------~~~g~~V~~v~~gspA~~aG-L~~GD~Il~Vng~~v~~~~~~   63 (85)
T d1w9ea1           3 PREVILCKDQDGKIGLRLKS---------IDNGIFVQLVQANSPASLVG-LRFGDQVLQINGENCAGWSSD   63 (85)
T ss_dssp             CEEEEEECCTTSCCSEEEEE---------ETTEEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHH
T ss_pred             CEEEEEEeCCCCCEeEEEEe---------CCCCEEEEEECCCCHHHHcC-CCCccEEEEECCEEeCCCCHH
Confidence            3458899987 569999998         34489999999999999999 99999    999999998774

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.5e-08  Score=84.06  Aligned_cols=49  Identities=29%  Similarity=0.400  Sum_probs=44.7

Q ss_pred             hHHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         47 VAQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        47 i~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      .++..+|+|++||+|++|||+++.+++|++|+++|+++++.|+|+|.|+
T Consensus        42 g~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~~v~L~v~Rp   90 (92)
T d2fe5a1          42 GAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKP   90 (92)
T ss_dssp             SHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCSEEEEEEECC
T ss_pred             CChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence            3444567899999999999999999999999999999999999999985

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.5e-08  Score=84.06  Aligned_cols=48  Identities=38%  Similarity=0.596  Sum_probs=44.1

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      ++-.+|+|++||+|++|||+++.++||++|+.+|+++++.|+|+|.|.
T Consensus        43 ~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~v~L~v~R~   90 (92)
T d1t2ma1          43 AADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLEVAKQ   90 (92)
T ss_dssp             HHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEEC
T ss_pred             hHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCeEEEEEEeC
Confidence            344567899999999999999999999999999999999999999985

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=2.1e-08  Score=83.79  Aligned_cols=48  Identities=27%  Similarity=0.394  Sum_probs=43.9

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      ++..+|+|++||+|++|||+++.++||++|+.+|+++++.|+|+|.|.
T Consensus        48 ~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r~   95 (96)
T d2fcfa1          48 PAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSI   95 (96)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECC
T ss_pred             HHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEEc
Confidence            444567899999999999999999999999999999999999999873

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.64  E-value=8.9e-09  Score=89.80  Aligned_cols=100  Identities=14%  Similarity=0.199  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCC--------ceEEEecCCCchhchhhh--CCCCC
Q psy12938        483 MYDRLFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTN--------VKFVSVPLGCVGDHFSAT--FKTSG  552 (612)
Q Consensus       483 l~~~~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~--------vkF~ki~~~~~~d~~~~~--~~i~~  552 (612)
                      |....|-+.|.+   +..++|.||++||..|+  .+.+++||+.+..        +.|.+++.+... .+..+  +.+.+
T Consensus         9 L~~~nFd~~i~~---~~~~lV~F~~~wc~~~~--~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~-~l~~~~~~~I~~   82 (122)
T d1g7ea_           9 LDTVTFYKVIPK---SKFVLVKFDTQYPYGEK--QDEFKRLAENSASSDDLLVAEVGISDYGDKLNM-ELSEKYKLDKES   82 (122)
T ss_dssp             CSHHHHHHHGGG---SSEEEEEEECSSCCTTT--THHHHHHHHHGGGCSSEEEEEEESCCTTSCHHH-HHHHHHTCSSSS
T ss_pred             CCHHhHHHHHhh---CCeEEEEEecCCcCccc--CHHHHHHHHHHHHHHHHhhhccceeeccccccH-HHHHhhcccccC
Confidence            334567555644   44899999999997775  4778888877632        334445555443 45555  46889


Q ss_pred             CcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHHCCc
Q psy12938        553 LPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAGL  593 (612)
Q Consensus       553 lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~  593 (612)
                      .|||++|++|..... +-+   .| ..+.++|.+|+.++++
T Consensus        83 yPTi~~f~~G~~~~~-~~y---~G-~rt~~~l~~fi~~~~~  118 (122)
T d1g7ea_          83 YPVFYLFRDGDFENP-VPY---SG-AVKVGAIQRWLKGQGV  118 (122)
T ss_dssp             CEEEEEEESSCCCCC-EEE---ES-CCCHHHHHHHHHTTSC
T ss_pred             CCeEEEEecCcccCc-eec---CC-CCCHHHHHHHHHhccc
Confidence            999999999975431 111   22 3677999999999875

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.63  E-value=2.3e-08  Score=83.09  Aligned_cols=48  Identities=17%  Similarity=0.284  Sum_probs=43.9

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      .+-.+|+|++||+|++|||+++.+++|++|+++|++++..|+|+|.|.
T Consensus        47 ~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~V~R~   94 (94)
T d1ihja_          47 PAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEADFKIELEIQTF   94 (94)
T ss_dssp             HHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEEC
T ss_pred             HHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeC
Confidence            334567899999999999999999999999999999999999999884

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=2.3e-08  Score=84.66  Aligned_cols=66  Identities=21%  Similarity=0.287  Sum_probs=51.8

Q ss_pred             eEEEEEEeeCC-CCcceEEEeccCCC------CCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        312 TLLGVELMKGA-EGLGLSIIGMGVGA------DAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       312 ~~~~v~l~k~~-~glG~si~g~~~g~------~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      +-.+|.|.|.. .||||+|.|+....      .......++||..|.|||+|++.| |++||    |||.++.+++|.
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aG-L~~GD~Il~INg~~v~~~~h~   81 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAG-LRMGDFLIEVNGQNVVKVGHR   81 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcC-CCCCCEEEEEcCeEcCCCCHH
Confidence            34568898865 68999999931111      122245589999999999999999 99999    999999999873

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.57  E-value=3.2e-08  Score=81.92  Aligned_cols=49  Identities=16%  Similarity=0.324  Sum_probs=42.8

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC---CCceEEEEeecC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT---SGLVRFLIGREK   96 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~---~~~v~l~v~R~~   96 (612)
                      ++..+|+|++||+|++|||+++.+++|++|+++|+.+   .+.|+|+|.|.+
T Consensus        41 ~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~~   92 (92)
T d2f0aa1          41 AVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKLE   92 (92)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC-
T ss_pred             cHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeCC
Confidence            4445789999999999999999999999999999874   678999999853

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.57  E-value=7.3e-08  Score=85.97  Aligned_cols=85  Identities=15%  Similarity=0.262  Sum_probs=63.9

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc----------------------hhchhhhCCCCCCc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV----------------------GDHFSATFKTSGLP  554 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~----------------------~d~~~~~~~i~~lP  554 (612)
                      ++.+|||+||++||++|+.+.+.|..+.+.+. ++++-|..+..                      ...+...|.+.++|
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  108 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR-FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP  108 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT-SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC-ceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccc
Confidence            45689999999999999999999999988774 45544432110                      11456789999999


Q ss_pred             EEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        555 AMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       555 tllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      +++++ ++|+++.+++|....       ++++..|.
T Consensus       109 ~~~liD~~G~i~~~~~G~~~~-------~~l~~~i~  137 (144)
T d1knga_         109 ETFVVGREGTIVYKLVGPITP-------DNLRSVLL  137 (144)
T ss_dssp             EEEEECTTSBEEEEEESCCCH-------HHHHHTHH
T ss_pred             eEEEEcCCCeEEEEEeCCCCH-------HHHHHHHH
Confidence            88888 799999999887443       56665554

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.57  E-value=9.3e-08  Score=84.97  Aligned_cols=89  Identities=10%  Similarity=0.156  Sum_probs=70.4

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc---------------------------hhchhhh
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV---------------------------GDHFSAT  547 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~---------------------------~d~~~~~  547 (612)
                      ++.+||++||++||++|+...+.|.++.+++.  ++.++.+..+..                           ...++..
T Consensus        22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  101 (143)
T d2fy6a1          22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQS  101 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHHH
Confidence            56689999999999999999999999988774  577776653200                           0134678


Q ss_pred             CCCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHHCC
Q psy12938        548 FKTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVEAG  592 (612)
Q Consensus       548 ~~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g  592 (612)
                      |.+.++|+++++ ++|+++....|...       .++++.+|.+..
T Consensus       102 ~~v~~~P~~~liD~~G~i~~~~~G~~~-------~~~~~~~l~~~~  140 (143)
T d2fy6a1         102 LNISVYPSWALIGKDGDVQRIVKGSIN-------EAQALALIRDPN  140 (143)
T ss_dssp             TTCCSSSEEEEECTTSCEEEEEESCCC-------HHHHHHHHHCTT
T ss_pred             cCCCccCEEEEECCCCEEEEEEECCCC-------HHHHHHHHHHHh
Confidence            999999999999 99999998888644       488999988654

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.5e-08  Score=82.14  Aligned_cols=54  Identities=22%  Similarity=0.384  Sum_probs=47.8

Q ss_pred             eEEEEEEeeCCCC-cceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        312 TLLGVELMKGAEG-LGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       312 ~~~~v~l~k~~~g-lG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +.++|+|.|+..| |||+|.+   +          +|++|.+||+|+++| |++||    |||.++.+++|..
T Consensus         4 ~pr~V~l~k~~~g~~Gf~i~~---g----------~V~~v~~g~~A~~~G-l~~GD~Il~INg~~v~~~t~~~   62 (82)
T d1r6ja_           4 DPRTITMHKDSTGHVGFIFKN---G----------KITSIVKDSSAARNG-LLTEHNICEINGQNVIGLKDSQ   62 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEET---T----------EEEEECTTSHHHHHT-CCSSEEEEEETTEECTTCCHHH
T ss_pred             CCEEEEEEeCCCCCcCEEEEE---E----------EEEEECCCChHHhcC-cCCCCEEEEeCCeEEeeCCHHH
Confidence            4567999999855 9999988   2          799999999999999 99999    9999999998843

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.56  E-value=1.3e-07  Score=83.12  Aligned_cols=86  Identities=17%  Similarity=0.159  Sum_probs=67.1

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----------------------hchhhhCCCCCCc
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----------------------DHFSATFKTSGLP  554 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----------------------d~~~~~~~i~~lP  554 (612)
                      ++.+|+|+||++||++|+...+.|.+++++|+++.|+-|......                      ..+...|.+.++|
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P  103 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP  103 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccC
Confidence            345899999999999999999999999999999998887653211                      1345689999999


Q ss_pred             EEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        555 AMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       555 tllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      +++++ ++|++.. +.|.       .+.++|++.|.+
T Consensus       104 ~~~iiD~~G~i~~-~~g~-------~~~~~l~~~i~~  132 (134)
T d1zzoa1         104 AYAFVDPHGNVDV-VRGR-------MSQDELTRRVTA  132 (134)
T ss_dssp             EEEEECTTCCEEE-EESC-------CCHHHHHHHHHH
T ss_pred             eEEEECCCCeEEE-EECC-------CCHHHHHHHHHh
Confidence            99999 7787543 3332       345888888865

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=4.8e-08  Score=82.61  Aligned_cols=46  Identities=20%  Similarity=0.408  Sum_probs=43.4

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|+|++||+|++|||+++.+++|++|+++|++++..|.|+|.|...
T Consensus        44 ~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~~~   89 (103)
T d1wf7a_          44 QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA   89 (103)
T ss_dssp             HTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSC
T ss_pred             HCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            4689999999999999999999999999999999999999998755

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.5e-08  Score=82.78  Aligned_cols=44  Identities=32%  Similarity=0.482  Sum_probs=41.9

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ++|++||+||+|||+++.++||++|+.+|+++++.++|+|.|+.
T Consensus        58 ~~L~~GD~Il~VNg~~v~~~t~~eav~~l~~~~~~v~L~V~R~~  101 (103)
T d2h3la1          58 KLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREV  101 (103)
T ss_dssp             TTCCTTCEEEEETTEECSSCCHHHHHHHHHHCCSEEEEEEEEEE
T ss_pred             hccCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEEC
Confidence            47999999999999999999999999999999999999999863

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5e-08  Score=83.45  Aligned_cols=49  Identities=29%  Similarity=0.510  Sum_probs=44.3

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ++..+|+|++||+|++|||+++.+++|++|+++|++++..|+|+|.|..
T Consensus        48 ~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~v~l~v~r~~   96 (110)
T d1um1a_          48 PAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKKMRFLVAKSD   96 (110)
T ss_dssp             HHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             HHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            3444678999999999999999999999999999999999999998754

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=6.1e-08  Score=80.55  Aligned_cols=46  Identities=24%  Similarity=0.437  Sum_probs=43.1

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP   98 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~   98 (612)
                      ++|++||+|++|||+++.+++|.+|+.+|+.++..|+|+|.|...|
T Consensus        46 ~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V~R~~~p   91 (94)
T d1vb7a_          46 ADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDRSSGP   91 (94)
T ss_dssp             HTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEECCCCC
T ss_pred             CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            4799999999999999999999999999999999999999997654

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.8e-08  Score=81.28  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=40.7

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+|++|||.++.++||++|+.+|+.++..++|+|.|+.
T Consensus        44 Gl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~v~~~~   86 (91)
T d1g9oa_          44 GLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPE   86 (91)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEECCC
Confidence            4999999999999999999999999999999999999998754

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.6e-08  Score=82.46  Aligned_cols=49  Identities=24%  Similarity=0.409  Sum_probs=44.5

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +..+|+|++||+||+|||+++.+++|++|+.+|+++...|+|+|.|...
T Consensus        51 A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~l~v~R~~~   99 (105)
T d1whaa_          51 AHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAASPTIALLLEREAG   99 (105)
T ss_dssp             HHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSCCSCEEEEEEECCC
T ss_pred             hhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcCCCeEEEEEEECCC
Confidence            3345789999999999999999999999999999999999999998654

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=5e-08  Score=79.49  Aligned_cols=45  Identities=18%  Similarity=0.270  Sum_probs=42.3

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      .|+|++||+|++|||+++.+++|++|+.+|+.++..|+|+|.|..
T Consensus        40 ~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~V~R~~   84 (85)
T d1rgwa_          40 QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTLQKSK   84 (85)
T ss_dssp             HSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            468999999999999999999999999999999999999999864

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.9e-08  Score=80.51  Aligned_cols=47  Identities=17%  Similarity=0.357  Sum_probs=42.2

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDP   98 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~~   98 (612)
                      .|+|++||+|++|||+++.++||++|+++||++  +..|+|+|.|...|
T Consensus        45 ~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~~~P   93 (96)
T d1ujva_          45 CPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP   93 (96)
T ss_dssp             STTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSSC
T ss_pred             ccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCCC
Confidence            468999999999999999999999999999985  47899999986554

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=8.9e-09  Score=85.75  Aligned_cols=59  Identities=29%  Similarity=0.330  Sum_probs=49.1

Q ss_pred             EEEEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        313 LLGVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       313 ~~~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .++|++ ++..+|||+|.|   |.+   .+.+|||..|.||++|++.| |++||    |||.++.+++|..
T Consensus         7 ~~tv~~-~g~~~~Gf~i~g---g~d---~~~~i~V~~v~~gs~A~~~g-L~~GD~Il~VNg~~v~~~~~~~   69 (94)
T d1vb7a_           7 GLTVDV-AGPAPWGFRISG---GRD---FHTPIIVTKVTERGKAEAAD-LRPGDIIVAINGQSAENMLHAE   69 (94)
T ss_dssp             CEEEEE-CSSSCCSBCCEE---ETT---TTEEEECCCBCTTSSHHHHT-CCTTCEEEEETTEECTTCCHHH
T ss_pred             eEEEEE-ECCCcCCEEEEe---ecc---CCCCEEEEeccCCChhhhCC-CCCCCEEEEECCEECCCCCHHH
Confidence            456777 455799999999   665   34589999999999999855 99999    9999999998843

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.8e-08  Score=86.55  Aligned_cols=50  Identities=26%  Similarity=0.341  Sum_probs=45.3

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      .+-.+|+|++||+||+|||+++.++||++|+++|++++..|+|+|.|...
T Consensus        56 ~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~~~~v~L~V~r~~~  105 (111)
T d1ujua_          56 AAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVLVCDGFE  105 (111)
T ss_dssp             HHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSSCSSEEEECCCCCCC
T ss_pred             hHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            34456789999999999999999999999999999999999999998755

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=7.2e-08  Score=79.42  Aligned_cols=47  Identities=26%  Similarity=0.302  Sum_probs=43.1

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +-..|.|++||+|++|||+++.+++|++|+.+|+++++.|+|+|.|.
T Consensus        43 A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~~   89 (90)
T d1qava_          43 ADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYM   89 (90)
T ss_dssp             HHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEEEC
T ss_pred             eeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEEe
Confidence            33467899999999999999999999999999999999999999875

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=2.3e-07  Score=81.74  Aligned_cols=89  Identities=17%  Similarity=0.245  Sum_probs=68.1

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---------------------hchhhhCCCCCCcE
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---------------------DHFSATFKTSGLPA  555 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---------------------d~~~~~~~i~~lPt  555 (612)
                      ++.+|+|.||++||++|+...+.|.+++++++++.|+-|..+...                     ..+...|.+..+|+
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~  102 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCE
Confidence            355899999999999999999999999999999999998765311                     13456799999999


Q ss_pred             EEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        556 MLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       556 llvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++++ ++|+...  +  .... ...+.++|...|.+
T Consensus       103 ~~lid~~G~i~~--v--~~~~-g~~~~~~l~~~l~~  133 (134)
T d1lu4a_         103 FVFYRADGTSTF--V--NNPT-AAMSQDELSGRVAA  133 (134)
T ss_dssp             EEEECTTSCEEE--E--CCSS-SCCCHHHHHHHHHH
T ss_pred             EEEEeCCCeEEE--E--eccC-CCCCHHHHHHHHHc
Confidence            9999 6787643  1  1111 23467888888764

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=6.3e-09  Score=89.43  Aligned_cols=54  Identities=17%  Similarity=0.258  Sum_probs=48.7

Q ss_pred             EEEEeeCCCCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        315 GVELMKGAEGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       315 ~v~l~k~~~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      +|.|.|+..||||+|.|   +       .++||+.|.|||+|+++| |++||    |||.++.+++|..
T Consensus        18 ~v~l~k~~~g~Gf~i~g---~-------~~v~V~~V~~~spA~~~G-L~~GD~Il~INg~~v~~~~~~e   75 (111)
T d1vaea_          18 GIHFTVEEGDLGFTLRG---N-------TPVQVHFLDPHCSASLAG-AKEGDYIVSIQGVDCKWLTVSE   75 (111)
T ss_dssp             CCCEECCSSCCSCCEES---S-------SSCEECCCCTTSSHHHHH-CCTTCEEEEETTEECSSCCHHH
T ss_pred             EEEEEECCCccCEEEEC---C-------ccEEEEEEcCCChHHhcc-cCcccEEEEECCEEcCCCCHHH
Confidence            38899999999999988   2       369999999999999999 99999    9999999998854

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=98.49  E-value=2.8e-07  Score=82.00  Aligned_cols=86  Identities=14%  Similarity=0.182  Sum_probs=67.9

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch--------------------------hchhhhCCC
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG--------------------------DHFSATFKT  550 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~--------------------------d~~~~~~~i  550 (612)
                      +.+++++||++||++|+...+.|.+|.++|. .++|+-|......                          ..+...|.+
T Consensus        29 ~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~~v  108 (143)
T d2b5xa1          29 EKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFEN  108 (143)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTCC
T ss_pred             CCEEEEEEEcCCCcchhhhhhhhhhhhhhhhccccceeEEeeccccccchhhhhhHHHhhccCccccccCccchHHHcCC
Confidence            4589999999999999999999999999996 4899888642110                          023457889


Q ss_pred             CCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        551 SGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       551 ~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ..+|+++++ ++|+++..++|....       +.|+..|.+
T Consensus       109 ~~~P~~~~id~~G~i~~~~~G~~~~-------~~l~~~l~~  142 (143)
T d2b5xa1         109 EYVPAYYVFDKTGQLRHFQAGGSGM-------KMLEKRVNR  142 (143)
T ss_dssp             CCSSEEEEECTTCBEEEEEESCSTT-------HHHHHHHHH
T ss_pred             CcCCEEEEECCCCEEEEEEECCCCH-------HHHHHHHHh
Confidence            999987777 999999999886544       778877764

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.2e-07  Score=82.00  Aligned_cols=49  Identities=20%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-..|+|++||+|++|||+++.+++|++|+++|+++...|+|+|.|...
T Consensus        62 A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~~~v~l~v~r~~~  110 (117)
T d1ujda_          62 AEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             HHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCSSCEEEEEESSCC
T ss_pred             HHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCeEEEEEEECCC
Confidence            3345689999999999999999999999999999999999999998754

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.5e-07  Score=77.10  Aligned_cols=46  Identities=41%  Similarity=0.552  Sum_probs=42.0

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      .+...|.|++||+|++|||+++.+++|++|+++|+++++.|+|+|.
T Consensus        42 ~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~~v~L~Vl   87 (88)
T d2fnea1          42 AASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLMVL   87 (88)
T ss_dssp             HHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEE
T ss_pred             hHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence            3444678999999999999999999999999999999999999985

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.9e-07  Score=81.44  Aligned_cols=50  Identities=12%  Similarity=0.225  Sum_probs=43.6

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~   97 (612)
                      ++-.+|+|++||+|++|||++|.+++|++|+++|+.+  +..|+|+|.|...
T Consensus        56 ~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~~~  107 (123)
T d1ueqa_          56 PAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             HHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred             HHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcCCC
Confidence            3344578999999999999999999999999999987  4679999998654

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=2.1e-07  Score=76.72  Aligned_cols=42  Identities=12%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||+++.+++|.+|+.+|+.++..|+|+|.|.
T Consensus        49 gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L~v~R~   90 (91)
T d1m5za_          49 GLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRN   90 (91)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEEC
T ss_pred             cCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEC
Confidence            499999999999999999999999999999999999999985

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.1e-07  Score=83.42  Aligned_cols=48  Identities=33%  Similarity=0.622  Sum_probs=43.3

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC-------CCceEEEEeecCCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-------SGLVRFLIGREKDP   98 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-------~~~v~l~v~R~~~~   98 (612)
                      .+|+|++||+|++|||+++.+++|++|+++||++       .+.|+|+|.|...|
T Consensus        70 ~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~~~p  124 (127)
T d1wg6a_          70 KDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP  124 (127)
T ss_dssp             HHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSCS
T ss_pred             ccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeCCCC
Confidence            4568999999999999999999999999999976       67999999997654

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=7.9e-08  Score=77.18  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=44.4

Q ss_pred             EEEEEeeCC--CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeeccccc
Q psy12938        314 LGVELMKGA--EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVGA  379 (612)
Q Consensus       314 ~~v~l~k~~--~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~~  379 (612)
                      .+|.|.|..  .+|||+|.|   |          ||.+|.|||+|++.| |++||    |||.++.+++|..
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~---g----------~V~~V~~gs~A~~~g-L~~GD~Il~INg~~v~~~~~~~   59 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQN---G----------IICSLMRGGIAERGG-VRVGHRIIEINGQSVVATPHEK   59 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEET---T----------EEEEECTTSHHHHHT-CCSSCEEEEETTEECTTSCHHH
T ss_pred             EEEEEEcCCCCCCcCEEEEC---C----------EEEEEcCCCHHHHCC-CCCCCEEEEECCEEeCCCCHHH
Confidence            457787754  689999988   2          899999999999855 99999    9999999998853

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.3e-07  Score=77.41  Aligned_cols=46  Identities=30%  Similarity=0.389  Sum_probs=42.0

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      .+-.+|+|++||+|++|||+++.+++|++|+++|+++.+.|+|+|.
T Consensus        37 ~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i~   82 (88)
T d1kwaa_          37 MIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKIV   82 (88)
T ss_dssp             HHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             HHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEE
Confidence            3344678999999999999999999999999999999999999997

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.4e-07  Score=79.72  Aligned_cols=46  Identities=22%  Similarity=0.249  Sum_probs=43.0

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +++|++||+|++|||+++.+++|++|+.+|+.+...|+|+|.|...
T Consensus        44 ~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~~   89 (103)
T d1v5la_          44 AANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             GGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred             hCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCc
Confidence            4689999999999999999999999999999999999999998654

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=1.2e-07  Score=80.28  Aligned_cols=45  Identities=24%  Similarity=0.477  Sum_probs=42.7

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      |+|++||+|++|||+++.+++|++|+++|++++..|+|+|.|...
T Consensus        54 ~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~~~~v~l~V~R~~~   98 (104)
T d2csja1          54 GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIVVKRPRK   98 (104)
T ss_dssp             HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHSCSEEEEEEEEEEE
T ss_pred             cCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCCC
Confidence            589999999999999999999999999999999999999999754

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.7e-07  Score=80.50  Aligned_cols=47  Identities=19%  Similarity=0.359  Sum_probs=43.6

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ..|.|++||+|++|||+++.+++|++|+++|+.++..|+|+|.|...
T Consensus        58 ~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~~~~v~l~V~r~~~  104 (114)
T d1uewa_          58 RCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             GGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHTTTEEEEEECCCSC
T ss_pred             hhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            35689999999999999999999999999999999999999998654

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.9e-07  Score=79.41  Aligned_cols=50  Identities=24%  Similarity=0.324  Sum_probs=42.8

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++-.+|+|++||+|++|||+++.+++|++|+.+|+.+.+.+.+++.|.+.
T Consensus        47 ~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~~r~~   96 (107)
T d1x6da1          47 LASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL   96 (107)
T ss_dssp             HHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECC
T ss_pred             HHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEEECCC
Confidence            33445689999999999999999999999999999998888777766543

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=1.9e-07  Score=78.72  Aligned_cols=49  Identities=27%  Similarity=0.348  Sum_probs=43.9

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      .+-..|.|++||+|++|||+++.+++|++|+.+|+.+...++|+|.|.+
T Consensus        45 ~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~L~v~~~~   93 (102)
T d1tp5a1          45 PADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP   93 (102)
T ss_dssp             HHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEEEEEEEECH
T ss_pred             hHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            3344668999999999999999999999999999999999999998753

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.2e-07  Score=75.00  Aligned_cols=42  Identities=21%  Similarity=0.401  Sum_probs=39.6

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      ..| |++||+|++|||+++.+++|++|+.+|+++++.|+|+|.
T Consensus        38 ~~G-l~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~v~   79 (82)
T d1r6ja_          38 RNG-LLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIM   79 (82)
T ss_dssp             HHT-CCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEE
T ss_pred             hcC-cCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEEEE
Confidence            345 999999999999999999999999999999999999996

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.3e-07  Score=79.01  Aligned_cols=47  Identities=23%  Similarity=0.410  Sum_probs=41.5

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeec
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGRE   95 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~   95 (612)
                      +-.+|+|++||+|++|||.++.++||++|+.+|+++  ...++|+|.|+
T Consensus        60 A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~RP  108 (108)
T d2cssa1          60 ADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRP  108 (108)
T ss_dssp             HHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEEC
T ss_pred             hhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeCc
Confidence            344578999999999999999999999999999975  56899999884

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.9e-07  Score=78.76  Aligned_cols=49  Identities=29%  Similarity=0.464  Sum_probs=44.4

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +...|.|++||+|++|||+++.+++|.+|+++|+++...|+|+|.|...
T Consensus        49 A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v~l~v~R~~~   97 (103)
T d1wfva_          49 AIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVRLLLKRGTG   97 (103)
T ss_dssp             HHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEECEEEECTTC
T ss_pred             HHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEEEEEEEECCC
Confidence            3346789999999999999999999999999999999999999998654

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.8e-07  Score=78.90  Aligned_cols=48  Identities=23%  Similarity=0.394  Sum_probs=42.2

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCC
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD   97 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~   97 (612)
                      ..+|+|++||+|++|||+++.+++|++|+++|+++  ...|+|+|.|...
T Consensus        48 ~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~~~   97 (103)
T d1uepa_          48 DRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             GGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence            34578999999999999999999999999999987  4679999988654

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.1e-07  Score=83.91  Aligned_cols=75  Identities=16%  Similarity=0.184  Sum_probs=54.2

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhc---CCceEEEecCCCchhchhh-hCCCCCCcEEEEE-ECCEEeeEEEecc
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSH---TNVKFVSVPLGCVGDHFSA-TFKTSGLPAMLAY-RGGEVVGNFVRLG  572 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~---~~vkF~ki~~~~~~d~~~~-~~~i~~lPtllvy-k~G~~~~~~vg~~  572 (612)
                      +.+|+|+||++||++|+.|.+.+..+++.+   .+.-+++||.+... .+.. .+....+||++++ .+|+++..+.|..
T Consensus        25 ~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~-~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~g~~  103 (135)
T d1sena_          25 GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP-KDEDFSPDGGYIPRILFLDPSGKVHPEIINEN  103 (135)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC-SCGGGCTTCSCSSEEEEECTTSCBCTTCCCTT
T ss_pred             CCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcCH-HHHHHHhhcccceeEEEECCCCeEEEEecCCC
Confidence            448999999999999999999987665432   34556666655432 2322 3455678999999 5899998887754


Q ss_pred             c
Q psy12938        573 E  573 (612)
Q Consensus       573 ~  573 (612)
                      .
T Consensus       104 ~  104 (135)
T d1sena_         104 G  104 (135)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.7e-07  Score=79.64  Aligned_cols=49  Identities=24%  Similarity=0.217  Sum_probs=44.2

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +-..|+|++||+|++|||+++.+++|++|+.+|+++...|+|+|.|...
T Consensus        55 A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~v~l~v~~~~~  103 (117)
T d1v62a_          55 VDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEKVRLEILPVPQ  103 (117)
T ss_dssp             HHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSEEEEEECCBTT
T ss_pred             HHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCcEEEEEEECCC
Confidence            3345789999999999999999999999999999999999999987544

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=3.1e-07  Score=77.02  Aligned_cols=44  Identities=18%  Similarity=0.328  Sum_probs=41.0

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      -..|+|++||+|++|||+++.+++|++|+++|+++.+.|+|+|.
T Consensus        55 ~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~v~   98 (100)
T d1va8a1          55 EKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFVLI   98 (100)
T ss_dssp             HHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEEEE
T ss_pred             hhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEEEEE
Confidence            34578999999999999999999999999999999999999986

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.4e-07  Score=74.32  Aligned_cols=41  Identities=27%  Similarity=0.460  Sum_probs=39.3

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      |+|++||+|++|||+++.+++|++|+++|+++++.++|+|.
T Consensus        36 ~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~vi   76 (79)
T d1y7na1          36 GGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTM   76 (79)
T ss_dssp             HTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             CCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEE
Confidence            57999999999999999999999999999999999999985

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=4.8e-07  Score=73.50  Aligned_cols=45  Identities=27%  Similarity=0.456  Sum_probs=37.7

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCc--eEEEE
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGL--VRFLI   92 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~--v~l~v   92 (612)
                      .+-.+|+|++||+|++|||+++.++||++|+++|+++...  ++|.|
T Consensus        38 ~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V   84 (85)
T d1x45a1          38 PAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI   84 (85)
T ss_dssp             HHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE
T ss_pred             HHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            3345678999999999999999999999999999998654  45544

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.1e-07  Score=75.82  Aligned_cols=46  Identities=28%  Similarity=0.429  Sum_probs=42.1

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +-..| |++||+|++|||+++.+++|.+|+.+|++++..|+|+|.|.
T Consensus        52 A~~~G-L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   97 (97)
T d1x5qa1          52 AARAG-VRVGDKLLEVNGVALQGAEHHEAVEALRGAGTAVQMRVWRE   97 (97)
T ss_dssp             HHHHT-CCTTCEEEEETTEECTTCCHHHHHHHHHSCCSEEEEEEEEC
T ss_pred             hHhhc-ccCCCEEEEECCEECCCCCHHHHHHHHhCCCCEEEEEEEEC
Confidence            33455 99999999999999999999999999999999999999984

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=2.9e-07  Score=79.59  Aligned_cols=50  Identities=14%  Similarity=0.218  Sum_probs=43.4

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC----CCceEEEEeecCCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT----SGLVRFLIGREKDP   98 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~----~~~v~l~v~R~~~~   98 (612)
                      +-.+|+|++||+|++|||+++.++||++|+.+|+.+    +..|+|+|.|..++
T Consensus        56 A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~pp~  109 (118)
T d1v6ba_          56 AERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPK  109 (118)
T ss_dssp             HHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECCCSC
T ss_pred             HHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeCCCC
Confidence            334578999999999999999999999999999865    66799999987553

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.30  E-value=4.8e-07  Score=75.53  Aligned_cols=46  Identities=24%  Similarity=0.308  Sum_probs=41.9

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      ++-..|.|++||+|++|||+++.+++|++|+.+|+.+...|+|+|.
T Consensus        50 ~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~l~v~   95 (98)
T d1rzxa_          50 LAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVANSSNLIITVK   95 (98)
T ss_dssp             HHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHTCTEEEEEEE
T ss_pred             hHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            3444578999999999999999999999999999999999999986

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=4.6e-07  Score=76.38  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=40.3

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||+++.+++|++++.+|++++..|+|+|.|.
T Consensus        60 GL~~GD~Il~INg~~v~~~~h~evv~~ik~~~~~v~L~V~~~  101 (104)
T d1q3oa_          60 GLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMV  101 (104)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CCCCCCEEEEEcCeEcCCCCHHHHHHHHHcCCCeEEEEEEec
Confidence            599999999999999999999999999999999999999875

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2e-07  Score=82.05  Aligned_cols=46  Identities=24%  Similarity=0.437  Sum_probs=41.9

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCC-CceEEEEeecCC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS-GLVRFLIGREKD   97 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~-~~v~l~v~R~~~   97 (612)
                      +|+|++||+||+|||+++.+++|++|+++|+.+. +.|+|+|.|...
T Consensus        73 ~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~~~  119 (130)
T d1i16a_          73 SETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             SCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred             cCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcCCC
Confidence            4689999999999999999999999999999975 589999998754

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=5.7e-07  Score=75.89  Aligned_cols=46  Identities=17%  Similarity=0.274  Sum_probs=40.2

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKDP   98 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~~   98 (612)
                      ..| |++||+||+|||+++.+++|++|+.+|+.+. .++|+|.|...|
T Consensus        56 ~~G-L~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~v~l~V~~~~~P  101 (104)
T d1wi2a_          56 RAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EISMRVRFFSGP  101 (104)
T ss_dssp             HHT-CCTTCEEEEETTEECSSCCHHHHHHHHHHSS-SEEEEEECCCCS
T ss_pred             hcc-cccCCEEEEECCEECCCCCHHHHHHHHhcCC-eEEEEEEECCCC
Confidence            344 9999999999999999999999999999875 799999776544

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=4.5e-07  Score=75.44  Aligned_cols=42  Identities=17%  Similarity=0.402  Sum_probs=38.1

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcC--CCeEEEEEeecCCC
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKDP   42 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~--~~~v~l~v~r~~~~   42 (612)
                      +||+||+|||++|.++||++|+++||++  +..|+|+|.|...+
T Consensus        50 ~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~~~P   93 (96)
T d1ujva_          50 EGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRGSGP   93 (96)
T ss_dssp             SSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECCSSC
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCCC
Confidence            6999999999999999999999999986  46899999997654

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.29  E-value=1.2e-06  Score=76.98  Aligned_cols=86  Identities=15%  Similarity=0.194  Sum_probs=67.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------hchhhhCCCCCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------DHFSATFKTSGL  553 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------d~~~~~~~i~~l  553 (612)
                      ++.+++|.||++||+.|+.+.+.|..+.++|.  .+.|+.|+.+...                     ..+...|.+.++
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            34589999999999999999999999999986  4888887643211                     133478999999


Q ss_pred             cEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        554 PAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       554 Ptllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      |+++++ ++|+++.++.|...       .+.++.+|.
T Consensus       104 P~~~liD~~G~i~~~~~G~~~-------~~~~~~~l~  133 (137)
T d1st9a_         104 PTTFLINPEGKVVKVVTGTMT-------ESMIHDYMN  133 (137)
T ss_dssp             CEEEEECTTSEEEEEEESCCC-------HHHHHHHHH
T ss_pred             ceEEEECCCCEEEEEEECCCC-------HHHHHHHHH
Confidence            988777 89999999988633       377777764

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=4e-07  Score=75.75  Aligned_cols=47  Identities=21%  Similarity=0.303  Sum_probs=41.1

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC----CCceEEEEee
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT----SGLVRFLIGR   94 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~----~~~v~l~v~R   94 (612)
                      ++..+|+|++||+|++|||+++.+++|++|+++|+.+    ..++.|.+.|
T Consensus        46 ~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          46 DCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             HHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             ccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            4445678999999999999999999999999999986    4678888876

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=7e-07  Score=71.08  Aligned_cols=42  Identities=17%  Similarity=0.190  Sum_probs=40.4

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||+++.+++|.+++.+|++++..++|+|.|.
T Consensus        35 GL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1          35 GLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            499999999999999999999999999999999999999984

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.25  E-value=2.9e-07  Score=78.71  Aligned_cols=49  Identities=22%  Similarity=0.263  Sum_probs=41.3

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      ++-..|+|++||+|++|||+++.+++|++|+.+|+.+...+.+++.+..
T Consensus        38 pA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~l~~~~   86 (112)
T d1qaua_          38 AAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRG   86 (112)
T ss_dssp             HHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEEC
T ss_pred             HHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEEEEEeC
Confidence            3445568999999999999999999999999999999877777665543

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=5.7e-07  Score=75.78  Aligned_cols=41  Identities=22%  Similarity=0.422  Sum_probs=38.8

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCC
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   41 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~   41 (612)
                      +||+||+|||+++.+++|++|+++||+++..|.|+|.|...
T Consensus        49 ~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v~R~~~   89 (103)
T d1wf7a_          49 IGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTLQRASA   89 (103)
T ss_dssp             TTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEECCCSC
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            69999999999999999999999999999999999998754

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=98.24  E-value=1.2e-06  Score=77.99  Aligned_cols=70  Identities=24%  Similarity=0.445  Sum_probs=55.4

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCch-----------------------hchhhhCCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVG-----------------------DHFSATFKT  550 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~-----------------------d~~~~~~~i  550 (612)
                      ++.+|+|+||++||++|+...+.|.++.++|.   ++.++-|..+...                       ..+...|.+
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~v  106 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHHHcCC
Confidence            35589999999999999999999999999984   4777877765311                       013467999


Q ss_pred             CCCcEEEEEE-C-CEEee
Q psy12938        551 SGLPAMLAYR-G-GEVVG  566 (612)
Q Consensus       551 ~~lPtllvyk-~-G~~~~  566 (612)
                      .++||++++. + |++++
T Consensus       107 ~~~Pt~~lID~~~G~Ii~  124 (144)
T d1o73a_         107 ESIPTLITINADTGAIIG  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CcCCEEEEEECCCCEEEe
Confidence            9999999996 5 76665

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.23  E-value=1.5e-06  Score=77.48  Aligned_cols=70  Identities=17%  Similarity=0.380  Sum_probs=54.0

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCch-----------------------hchhhhCCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVG-----------------------DHFSATFKT  550 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~-----------------------d~~~~~~~i  550 (612)
                      ++.+|+++|||+||++|+...+.|.+|.++|.   .+.++-|..|...                       ..+...|.+
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~y~v  106 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHHHCCC
Confidence            45689999999999999999999999988884   4666777655321                       124567999


Q ss_pred             CCCcEEEEEE-C-CEEee
Q psy12938        551 SGLPAMLAYR-G-GEVVG  566 (612)
Q Consensus       551 ~~lPtllvyk-~-G~~~~  566 (612)
                      .++||++++. + |+++.
T Consensus       107 ~~iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_         107 KSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CCcCEEEEEeCCCCEEEe
Confidence            9999988774 4 77764

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.1e-07  Score=75.61  Aligned_cols=49  Identities=24%  Similarity=0.361  Sum_probs=41.7

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC-----CCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-----SGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-----~~~v~l~v~R~~~   97 (612)
                      +..+|+|++||+|++|||+++.+++|++|+.+|+++     ...++|.|.+...
T Consensus        45 A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v~~~~s   98 (103)
T d1ufxa_          45 AHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTEFNS   98 (103)
T ss_dssp             HHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCCC
T ss_pred             hhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEEeCCCC
Confidence            334578999999999999999999999999999985     3678888876544

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=6.3e-07  Score=78.29  Aligned_cols=47  Identities=21%  Similarity=0.166  Sum_probs=42.4

Q ss_pred             hhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC--CCceEEEEeecCC
Q psy12938         51 IRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT--SGLVRFLIGREKD   97 (612)
Q Consensus        51 ~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~--~~~v~l~v~R~~~   97 (612)
                      .+|+|++||+|++|||+++.+++|++|+++|+.+  +..|+|+|.|...
T Consensus        64 ~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~~~  112 (126)
T d1wifa_          64 SDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGFL  112 (126)
T ss_dssp             GCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSSS
T ss_pred             HcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeCCC
Confidence            3568999999999999999999999999999986  4799999999754

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=9e-07  Score=79.44  Aligned_cols=94  Identities=20%  Similarity=0.323  Sum_probs=64.4

Q ss_pred             CceEEEEEeCCCChhhhhhHHHH---HHHHhhc-CCceEEEecCCCc-hhchhhhCCCCCCcEEEEE--ECCEEeeEEEe
Q psy12938        498 HITVIAHLSSPSLPACRALNSSL---AELSRSH-TNVKFVSVPLGCV-GDHFSATFKTSGLPAMLAY--RGGEVVGNFVR  570 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l---~~LA~~~-~~vkF~ki~~~~~-~d~~~~~~~i~~lPtllvy--k~G~~~~~~vg  570 (612)
                      +.+|+|.||++||..|+.|+...   ..+.+-+ .+.-|++++.+.. +..+.++|.+.++|+++++  ++|+.+..+-+
T Consensus        42 ~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~e~~~~~~~y~v~~~Pti~~idp~~ge~v~~~~~  121 (147)
T d2dlxa1          42 NKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQ  121 (147)
T ss_dssp             TCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEEESS
T ss_pred             CCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccchhhhhhhhheecCceeEEEEEeCCCCeEecccCC
Confidence            44899999999999999997632   2232222 2345667776532 1256789999999999999  47888754422


Q ss_pred             ccccccCCCCHHHHHHHHHHCCccc
Q psy12938        571 LGEELGEGYFVEDVEAFLVEAGLLR  595 (612)
Q Consensus       571 ~~~~~g~~~~~~~lE~~L~~~g~l~  595 (612)
                      +    ...-+.+.|+.||.+|+-+.
T Consensus       122 ~----~~~~fl~~L~~fl~~~~~~~  142 (147)
T d2dlxa1         122 L----DVSSFLDQVTGFLGEHGQLD  142 (147)
T ss_dssp             C----CHHHHHHHHHHHHHHTCSCS
T ss_pred             C----CHHHHHHHHHHHHhhCCCCc
Confidence            2    12334677899999886543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.15  E-value=1.4e-06  Score=79.57  Aligned_cols=73  Identities=15%  Similarity=0.171  Sum_probs=58.3

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhC---CCCCCcEEEEE-ECCEEeeEEEec
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATF---KTSGLPAMLAY-RGGEVVGNFVRL  571 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~---~i~~lPtllvy-k~G~~~~~~vg~  571 (612)
                      ...+++.||++||++|+..-|.|..++.+|++++|.-|+.+..+ .....|   .....|+++++ +++..+.++++.
T Consensus        54 ~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~-~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~  130 (166)
T d1z6na1          54 RRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAE-DDLRQRLALERIAIPLVLVLDEEFNLLGRFVER  130 (166)
T ss_dssp             SCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHH-HHTTTTTTCSSCCSSEEEEECTTCCEEEEEESS
T ss_pred             CCeEEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccCH-HHHHHHHHhccccccceeecCccchhccccccc
Confidence            34788889999999999999999999999999999999887655 455666   44466787777 456777777654

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.14  E-value=9.5e-07  Score=74.37  Aligned_cols=41  Identities=22%  Similarity=0.265  Sum_probs=38.7

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecCC
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   41 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~~   41 (612)
                      +||+||+|||+++.+++|.+|+++||+++..|.|+|.|...
T Consensus        49 ~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~~   89 (103)
T d1v5la_          49 PGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             TTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred             CCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECCc
Confidence            69999999999999999999999999999999999999753

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=7.8e-07  Score=77.28  Aligned_cols=48  Identities=23%  Similarity=0.253  Sum_probs=40.9

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      .+-.+|+|++||+|++|||+++.+++|++|+++|+.+...++|++.|.
T Consensus        57 ~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~~  104 (122)
T d1v5qa_          57 PAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIE  104 (122)
T ss_dssp             HHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             HHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEEEEEe
Confidence            344467899999999999999999999999999999887766666554

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.3e-06  Score=75.30  Aligned_cols=45  Identities=20%  Similarity=0.338  Sum_probs=41.6

Q ss_pred             cccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         53 QSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        53 G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      ++|++||+|++|||+++.+++|++|+.+|+.++..|+|+|.|...
T Consensus        58 ~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~v~~~p~  102 (117)
T d1uita_          58 AGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILAQYNPH  102 (117)
T ss_dssp             HTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEECCCSC
T ss_pred             CCCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEEEEECCc
Confidence            369999999999999999999999999999999999999987544

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7e-07  Score=74.65  Aligned_cols=46  Identities=22%  Similarity=0.255  Sum_probs=38.6

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEe
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIG   93 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~   93 (612)
                      .+..+|+|++||+|++|||.++.++||++|+++|+++...+.|++.
T Consensus        50 ~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~   95 (99)
T d1x5ra1          50 PAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLE   95 (99)
T ss_dssp             HHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEE
T ss_pred             hHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEE
Confidence            4445679999999999999999999999999999987655555543

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=2.4e-06  Score=72.87  Aligned_cols=44  Identities=16%  Similarity=0.140  Sum_probs=39.3

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCC-CceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS-GLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~-~~v~l~v~R~~~   97 (612)
                      +|++||+|++|||+++.+++|++++++|+.+. ..|+|+|.+..+
T Consensus        53 GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~~~~   97 (111)
T d1vaea_          53 GAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLLD   97 (111)
T ss_dssp             HCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEECEEC
T ss_pred             ccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEECCCC
Confidence            39999999999999999999999999999875 579999887543

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.4e-06  Score=73.68  Aligned_cols=44  Identities=16%  Similarity=0.369  Sum_probs=38.0

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHhCC----CceEEEEeec
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS----GLVRFLIGRE   95 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~----~~v~l~v~R~   95 (612)
                      +|+|++||+|++|||+++.+++|++|+.+|+++.    ..|.|+|.|.
T Consensus        51 ~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          51 VPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN   98 (106)
T ss_dssp             SSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred             cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCC
Confidence            5789999999999999999999999999998753    4577777543

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=2.1e-06  Score=71.87  Aligned_cols=43  Identities=30%  Similarity=0.392  Sum_probs=37.7

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|++||+|++|||+++.+++|++|+++|+.++. +.|+|.|...
T Consensus        52 gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~-~~l~V~~~~~   94 (101)
T d1ueza_          52 GLRVGDQILRVNDKSLARVTHAEAVKALKGSKK-LVLSVYSAGR   94 (101)
T ss_dssp             TCCSSCCEEEETTEECSSCCHHHHHHHSSSSSS-CCEEECCCCC
T ss_pred             CCCCCcEEEEECCEECCCCCHHHHHHHHhcCCC-EEEEEEECCC
Confidence            499999999999999999999999999998764 6677776544

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.98  E-value=1e-05  Score=71.31  Aligned_cols=70  Identities=20%  Similarity=0.298  Sum_probs=54.8

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC---CceEEEecCCCch-----------------------hchhhhCCC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT---NVKFVSVPLGCVG-----------------------DHFSATFKT  550 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~---~vkF~ki~~~~~~-----------------------d~~~~~~~i  550 (612)
                      ++.+|+++||++||++|+...+.|.+++++|.   .+.++-|..+...                       ..+...|.+
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~y~v  104 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  104 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHHHcCC
Confidence            35589999999999999999999999999984   4677776654210                       134568999


Q ss_pred             CCCcEEEEEE-C-CEEee
Q psy12938        551 SGLPAMLAYR-G-GEVVG  566 (612)
Q Consensus       551 ~~lPtllvyk-~-G~~~~  566 (612)
                      .++||++++. + |+++.
T Consensus       105 ~~~Pt~~liD~~~G~Vi~  122 (144)
T d1o8xa_         105 ESIPTLIGVDADSGDVVT  122 (144)
T ss_dssp             CSSSEEEEEETTTCCEEE
T ss_pred             CcCCEEEEEeCCCCEEEE
Confidence            9999999996 5 66654

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=5.2e-06  Score=72.54  Aligned_cols=42  Identities=26%  Similarity=0.484  Sum_probs=37.8

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||+||+|||+++.+++|++|+++|+++ ..+.|+|.|..
T Consensus        63 gL~~GD~Il~INg~~v~~~s~~evv~~lr~~-~~v~l~v~~~~  104 (128)
T d1uf1a_          63 GLKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLILTVKDVG  104 (128)
T ss_dssp             TCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEEEEEECCS
T ss_pred             CCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CcEEEEEEECC
Confidence            5999999999999999999999999999986 47888887654

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=8.6e-06  Score=65.76  Aligned_cols=41  Identities=22%  Similarity=0.437  Sum_probs=36.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCC-CceEEEEee
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTS-GLVRFLIGR   94 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~-~~v~l~v~R   94 (612)
                      +|++||+|++|||+++.++++++++.+|+.+. ..|+|+|.+
T Consensus        42 GL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          42 GLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            49999999999999999999999999999875 578888854

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5e-06  Score=69.56  Aligned_cols=41  Identities=27%  Similarity=0.455  Sum_probs=37.1

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~   95 (612)
                      +|++||+|++|||+++.+++|++|+++|+++. .++|+|.|.
T Consensus        51 gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~-~~~l~v~~~   91 (101)
T d1x5na1          51 GLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR-SLTISIVAA   91 (101)
T ss_dssp             TCCTTCEEEEETTEETTSCCTTHHHHHHHHCS-SEEEEECSS
T ss_pred             CCCcccEEEEECCEECCCCCHHHHHHHHhCCC-CEEEEEEEC
Confidence            69999999999999999999999999999986 577777764

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.89  E-value=2.7e-05  Score=71.19  Aligned_cols=88  Identities=19%  Similarity=0.217  Sum_probs=62.2

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCC-chhch--------------------------hhh
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGC-VGDHF--------------------------SAT  547 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~-~~d~~--------------------------~~~  547 (612)
                      ++.+||++||++||+.|+...+.|.++..+|.  ...|+-|..+. .++.+                          ...
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  134 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  134 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHhhh
Confidence            45589999999999999999999999998874  45555554331 01011                          123


Q ss_pred             CCCCCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        548 FKTSGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       548 ~~i~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      |.+.++|+++++ ++|+++.+++|..+.     ..+++.++|.
T Consensus       135 ~~v~~~P~~~lID~~G~I~~~~~G~~~~-----~~~e~~~~l~  172 (176)
T d1jfua_         135 GRALGMPTSVLVDPQGCEIATIAGPAEW-----ASEDALKLIR  172 (176)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCT-----TSHHHHHHHH
T ss_pred             ccCCCCCeEEEEcCCCEEEEEEECCCCC-----ChHHHHHHHH
Confidence            567778998888 899999999886443     3355555554

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=97.84  E-value=1.5e-05  Score=74.12  Aligned_cols=70  Identities=10%  Similarity=0.142  Sum_probs=55.1

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCC---c-------------------------hhchhhh
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGC---V-------------------------GDHFSAT  547 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~---~-------------------------~d~~~~~  547 (612)
                      ++.+|||.||++||++|+...+.|.+|+++|. ++.|+-|....   .                         ...+...
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            35589999999999999999999999999995 48888875310   0                         0124578


Q ss_pred             CCCCCCcEEEEE-ECCEEee
Q psy12938        548 FKTSGLPAMLAY-RGGEVVG  566 (612)
Q Consensus       548 ~~i~~lPtllvy-k~G~~~~  566 (612)
                      |.+..+|+++++ ++|+++.
T Consensus       111 ~~v~~~P~~~liD~~G~i~y  130 (187)
T d2cvba1         111 YRALRTPEVFLFDERRLLRY  130 (187)
T ss_dssp             TTCCEESEEEEECTTCBEEE
T ss_pred             ccccceeeEEEEcCCCeEEE
Confidence            999999988888 5687764

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=97.82  E-value=1.4e-05  Score=65.59  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=40.9

Q ss_pred             HHhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeec
Q psy12938         48 AQLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGRE   95 (612)
Q Consensus        48 ~~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~   95 (612)
                      .+...| |++||+|++|||.++.++++++++.+|+. .+..|+|+|.|.
T Consensus        31 PA~~AG-l~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~   78 (92)
T d1fc6a3          31 PAEKAG-ARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP   78 (92)
T ss_dssp             HHHHTT-CCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEET
T ss_pred             ChhHHh-hHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEEC
Confidence            344455 99999999999999999999999999995 556899999985

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=97.73  E-value=9.2e-06  Score=66.64  Aligned_cols=49  Identities=24%  Similarity=0.363  Sum_probs=41.8

Q ss_pred             CCcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecccc
Q psy12938        323 EGLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMGVG  378 (612)
Q Consensus       323 ~glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~~~  378 (612)
                      .|+|++|..   ..+   ...+++|.+|++||||++.| |++||    |||.++.++++.
T Consensus         5 ~GiGi~i~~---~~~---~~~~v~V~~v~~gsPA~~AG-l~~GD~I~~Ing~~v~~~~~~   57 (92)
T d1fc6a3           5 TGVGLEITY---DGG---SGKDVVVLTPAPGGPAEKAG-ARAGDVIVTVDGTAVKGMSLY   57 (92)
T ss_dssp             BBCSEEEEE---CTT---CSSCEEEEEECTTSHHHHTT-CCTTCEEEEETTEECTTCCHH
T ss_pred             EEEEEEEEE---cCC---CCceEEEEEecCCCChhHHh-hHcCCcceecCceEcCCCCHH
Confidence            589999977   332   23479999999999999999 99999    999999998764

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=7.2e-05  Score=64.61  Aligned_cols=47  Identities=21%  Similarity=0.324  Sum_probs=38.7

Q ss_pred             HhhhcccCCCCEEEEECCeecCCCCHHHHHHHHHhC-CCceEEEEeecCC
Q psy12938         49 QLIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRNT-SGLVRFLIGREKD   97 (612)
Q Consensus        49 ~i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~-~~~v~l~v~R~~~   97 (612)
                      +-.+|+|++||+|++|||.++.  ++++++.+|+.+ ...|.|+|.|++.
T Consensus        61 A~~~g~L~~GD~Il~INg~~v~--~~~~~~~~l~~~~~~~v~l~v~r~~~  108 (124)
T d1wh1a_          61 AAKDGRIREGDRIIQINGIEVQ--NREEAVALLTSEENKNFSLLIARPEL  108 (124)
T ss_dssp             HHHTCCCCTTCEEEEESSCBCC--SHHHHHHHHTCSSCCSCCEEEEECSS
T ss_pred             hhhhcccCCCCEEEEECCEECC--CHHHHHHHHhhCCCCcEEEEEEeCCC
Confidence            3345789999999999999997  467788888874 6789999998655

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.07  E-value=0.00019  Score=57.87  Aligned_cols=45  Identities=22%  Similarity=0.317  Sum_probs=38.1

Q ss_pred             CcceEEEeccCCCCCCCCccceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938        324 GLGLSIIGMGVGADAGLEKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG  376 (612)
Q Consensus       324 glG~si~g~~~g~~~~~~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~  376 (612)
                      +||+.+..   ..    +..|+||.+|.|||||++.| |+.||    |||..+..+.
T Consensus         4 ~LGv~~~~---~~----~~~Gv~V~~V~~~spA~~aG-l~~GD~I~~ing~~i~~~~   52 (88)
T d2z9ia1           4 SLGVQVTN---DK----DTLGAKIVEVVAGGAAANAG-VPKGVVVTKVDDRPINSAD   52 (88)
T ss_dssp             ECCEEEEC---CC-----CCSEEEEEECTTSTTGGGT-CCTTCEEEEETTEECCSHH
T ss_pred             EEeEEEEe---cC----CCCcEEEEEECCCCHHHHcC-CCCCCEEEEeCCCcCCcHH
Confidence            68999877   22    34589999999999999999 99999    8999998753

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.01  E-value=0.00035  Score=58.20  Aligned_cols=99  Identities=16%  Similarity=0.265  Sum_probs=67.1

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchh----chhhhCCCCCCcEEEEEECC
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGD----HFSATFKTSGLPAMLAYRGG  562 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d----~~~~~~~i~~lPtllvyk~G  562 (612)
                      .|++..-+..   . |+-|..+||+.|+.....|..+.-+|..+.|..++.+..+.    .+.+....+.+|.+  |-+|
T Consensus         3 ~~v~~~i~~~---~-Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqI--fi~g   76 (105)
T d1ktea_           3 AFVNSKIQPG---K-VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRV--FIGK   76 (105)
T ss_dssp             HHHHHHCCTT---C-EEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEE--EETT
T ss_pred             hHHHHHhccC---C-EEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEE--EECC
Confidence            3555544322   2 55688999999999999999998888889999988664321    22233466789977  5599


Q ss_pred             EEeeEEEeccccccCCCCHHHHHHHHHHCCccc
Q psy12938        563 EVVGNFVRLGEELGEGYFVEDVEAFLVEAGLLR  595 (612)
Q Consensus       563 ~~~~~~vg~~~~~g~~~~~~~lE~~L~~~g~l~  595 (612)
                      +.++.+--+...    .....|+.+|.+.|+|+
T Consensus        77 ~~IGG~~el~~l----~~~G~L~~~L~~~Ga~~  105 (105)
T d1ktea_          77 ECIGGCTDLESM----HKRGELLTRLQQVGAVK  105 (105)
T ss_dssp             EEEESHHHHHHH----HHHTHHHHHHHHHTCBC
T ss_pred             EEEecHHHHHHH----HHCCCHHHHHHHcCCCC
Confidence            877733222111    22246888999999874

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.49  E-value=0.0033  Score=53.34  Aligned_cols=78  Identities=18%  Similarity=0.287  Sum_probs=59.7

Q ss_pred             HHHhhccCCCCceEEEEEeC--CCChhhhhhHHHHHHHHhhcCCceEEEecCCC--chhchhhhCCCCCCcEEEEEECCE
Q psy12938        488 FLSEIDSEPRHITVIAHLSS--PSLPACRALNSSLAELSRSHTNVKFVSVPLGC--VGDHFSATFKTSGLPAMLAYRGGE  563 (612)
Q Consensus       488 ~~~~V~~~~~~~~Vvvhfy~--~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~--~~d~~~~~~~i~~lPtllvyk~G~  563 (612)
                      |++.+.+     +|-+++|.  +.|+.|..|...|++||.--+.+++...+.+.  .. .++++|.+...||++++++|+
T Consensus        16 ~~~~l~~-----pV~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e~~-~~~~~~~ver~Ps~~i~~~g~   89 (119)
T d1a8la1          16 FFSKMVN-----PVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPEGK-ELAKRYRIDRAPATTITQDGK   89 (119)
T ss_dssp             TGGGCCS-----CEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHHHH-HHHHHTTCCSSSEEEEEETTB
T ss_pred             HHHhCCC-----CEEEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcchhh-hHHHhhccccCceEEEecCCc
Confidence            4455544     56666665  57999999999999999988888876655442  22 567899999999999999997


Q ss_pred             Eee-EEEec
Q psy12938        564 VVG-NFVRL  571 (612)
Q Consensus       564 ~~~-~~vg~  571 (612)
                      ..+ +|.|+
T Consensus        90 ~~gIrF~Gi   98 (119)
T d1a8la1          90 DFGVRYFGL   98 (119)
T ss_dssp             CCSEEEESC
T ss_pred             ccceEEEec
Confidence            654 56665

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0019  Score=51.76  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=38.0

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~~   97 (612)
                      +|++||.|++|||+.+.  +.++...+|+.+++.+.|+|.|...
T Consensus        42 Gl~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~~   83 (88)
T d1ky9b2          42 GLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGDS   83 (88)
T ss_dssp             TCCSSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSSC
T ss_pred             CCCCCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECCE
Confidence            69999999999999997  7789999999999999999998643

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0064  Score=53.77  Aligned_cols=76  Identities=13%  Similarity=0.179  Sum_probs=54.0

Q ss_pred             ceEEEEEe-CCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCch--------------------hchhhhCCCCCCc--
Q psy12938        499 ITVIAHLS-SPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVG--------------------DHFSATFKTSGLP--  554 (612)
Q Consensus       499 ~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~--------------------d~~~~~~~i~~lP--  554 (612)
                      .+||+.|| ..||+.|....+.|.++..+|. .+.++-|..+...                    ..++..|.+...|  
T Consensus        34 ~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~~~ygv~~~~~~  113 (156)
T d2a4va1          34 RVVVFFVYPRASTPGSTRQASGFRDNYQELKEYAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFIGLLGAKKTPLS  113 (156)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHHHHHTCBSSSSS
T ss_pred             cEEEEEecccccCcchhhhhHHHHHHHHHHhhccceeeeccchhhhHHhhhcccCccceeccchHHHHHHHcCCCccccC
Confidence            46777778 7899999998899999888884 3566667654311                    1234567665554  


Q ss_pred             ----EEEEEECCEEeeEEEecccc
Q psy12938        555 ----AMLAYRGGEVVGNFVRLGEE  574 (612)
Q Consensus       555 ----tllvyk~G~~~~~~vg~~~~  574 (612)
                          +.++..+|+.+.+++++...
T Consensus       114 ~~~r~~~i~~dg~i~~~~~~~~~~  137 (156)
T d2a4va1         114 GSIRSHFIFVDGKLKFKRVKISPE  137 (156)
T ss_dssp             CBCCEEEEEETTEEEEEEESCCHH
T ss_pred             CeeEEEEEEECCeEEEEEEEeCCC
Confidence                56666999999999886443

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0049  Score=48.77  Aligned_cols=74  Identities=15%  Similarity=0.320  Sum_probs=52.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhh--CCCCCCcEEEEEECCEEeeEEEecccccc
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSAT--FKTSGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~--~~i~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      ||-|..+||+.|+.....|..+..+|..+.|..++.+..+   ..+.+.  ...+.+|.+  |-||+.++   |+     
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqI--fi~g~~IG---G~-----   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---GY-----   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---SS-----
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEE--EECCEEEE---CH-----
Confidence            4557889999999999999999999999999887643211   123222  234678986  55998776   33     


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                           ++|..++.+
T Consensus        73 -----~el~~~~~~   81 (85)
T d1egoa_          73 -----TDFAAWVKE   81 (85)
T ss_dssp             -----HHHHHHHHH
T ss_pred             -----HHHHHHHHh
Confidence                 667777664

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0026  Score=56.40  Aligned_cols=88  Identities=19%  Similarity=0.348  Sum_probs=60.2

Q ss_pred             hccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc-------------------------------
Q psy12938        492 IDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV-------------------------------  540 (612)
Q Consensus       492 V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~-------------------------------  540 (612)
                      |...+....+|+-|+++.|+.|+.+.+.|..+...+..+.|.-......                               
T Consensus        20 v~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~   99 (156)
T d1eeja1          20 VYKAPQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVA   99 (156)
T ss_dssp             EECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCC
T ss_pred             eecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccc
Confidence            3444445578889999999999999999999987766666655432100                               


Q ss_pred             ----------hhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        541 ----------GDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       541 ----------~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                                ...+...+.+++-||++ +-||+.+   .|+.       ..+.|+.+|.+
T Consensus       100 ~~~~~~~i~~~~~la~~lgv~GTPt~~-~~nG~~v---~G~~-------~~e~l~~~i~~  148 (156)
T d1eeja1         100 PASCDVDIADHYALGVQLGVSGTPAVV-LSNGTLV---PGYQ-------PPKEMKEFLDE  148 (156)
T ss_dssp             CCCCSCCHHHHHHHHHHHTCCSSSEEE-CTTSCEE---ESCC-------CHHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHcCCcCCCEEE-EeCCeEe---cCCC-------CHHHHHHHHHH
Confidence                      01234678999999964 5678654   3442       34788888765

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.53  E-value=0.0026  Score=56.10  Aligned_cols=88  Identities=18%  Similarity=0.313  Sum_probs=62.2

Q ss_pred             hccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCc-------------------------------
Q psy12938        492 IDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCV-------------------------------  540 (612)
Q Consensus       492 V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~-------------------------------  540 (612)
                      |...+....+|+.|+++.|+.|+.+.+.++.|...++.++|.-...-..                               
T Consensus        20 i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~   99 (150)
T d1t3ba1          20 VYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPK   99 (150)
T ss_dssp             EECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCS
T ss_pred             EECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhcccc
Confidence            3444455578888999999999999999999998888777775432100                               


Q ss_pred             ----------hhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        541 ----------GDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       541 ----------~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                                ...+...+.+++-||+++ -||+.+.   |+       ...++|+.+|.+
T Consensus       100 ~~~~~~~i~~~~~la~~lGv~GTPt~~~-~nG~~i~---G~-------~~~~~l~~~l~~  148 (150)
T d1t3ba1         100 EVKTPNIVKKHYELGIQFGVRGTPSIVT-STGELIG---GY-------LKPADLLRALEE  148 (150)
T ss_dssp             SCCCSSHHHHHHHHHHHHTCCSSCEEEC-TTSCCCC---SC-------CCHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHHhcCcCCCCEEEE-cCCcEec---CC-------CCHHHHHHHHHh
Confidence                      012356899999999775 5676433   22       344889988875

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.51  E-value=0.0069  Score=48.73  Aligned_cols=44  Identities=14%  Similarity=0.102  Sum_probs=35.0

Q ss_pred             hhhcccCCCCEEEEECCeecCCCCHHHHHHHHHh-CCCceEEEEeec
Q psy12938         50 LIRQSLQVNDQIIEVDGKSLVGVTQEYAASVLRN-TSGLVRFLIGRE   95 (612)
Q Consensus        50 i~~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~-~~~~v~l~v~R~   95 (612)
                      ...|-+|+||+|++|||.++.+..  +++.+|+. ++..|+|+|.|.
T Consensus        34 ~~aGl~k~GD~I~~IdG~~v~~~~--~~~~~l~g~~G~~V~L~i~R~   78 (91)
T d1k32a1          34 FEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGK   78 (91)
T ss_dssp             GGGTCCCTTCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECS
T ss_pred             HhcCCCCCCCEEEEECCEeecCcc--eeEEEEecCCCCEEEEEEEeC
Confidence            345433899999999999998654  67888876 567899999885

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.43  E-value=0.0054  Score=48.89  Aligned_cols=41  Identities=10%  Similarity=0.188  Sum_probs=32.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~   96 (612)
                      +|++||.|++|||+.+.+.  .+....++.  .+..|+|+|.|..
T Consensus        33 Gl~~GD~I~~ing~~i~~~--~~~~~~i~~~~~g~~v~l~v~r~~   75 (88)
T d2z9ia1          33 GVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPS   75 (88)
T ss_dssp             TCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CCCCCCEEEEeCCCcCCcH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            5999999999999999854  556666654  4689999999853

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=95.39  E-value=0.022  Score=43.43  Aligned_cols=58  Identities=16%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch--hchhhhCCCCCCcEEEEEECCEEee
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG--DHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~--d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |+-|..+||+.|......|++.     ++.|..++.+..+  ......+..+.+|++  |-||+.++
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~-----~i~~~~~~i~~~~~~~~~~~~~g~~tvP~i--~i~g~~ig   62 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA-----GLAYNTVDISLDDEARDYVMALGYVQAPVV--EVDGEHWS   62 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCBCCCEE--EETTEEEE
T ss_pred             EEEEeCCCChhHHHHHHHHHHc-----CCceEEEEccCCHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence            4557889999999999998875     4566666555322  133466788899976  45888655

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.24  E-value=0.034  Score=48.50  Aligned_cols=74  Identities=9%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch--------------------hchhhhCCC----
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG--------------------DHFSATFKT----  550 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~--------------------d~~~~~~~i----  550 (612)
                      +.+||+.|| +.||+.|....+.|.++..+|.  .+.++-|..+...                    -.+...|++    
T Consensus        30 gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~  109 (160)
T d2cx4a1          30 GRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNVYHED  109 (160)
T ss_dssp             SSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHHHHTTCEEEE
T ss_pred             CCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchHHHcCccccc
Confidence            457888888 8999999999999999888885  4777777654211                    022345654    


Q ss_pred             ------CCCcEEEEE-ECCEEeeEEEec
Q psy12938        551 ------SGLPAMLAY-RGGEVVGNFVRL  571 (612)
Q Consensus       551 ------~~lPtllvy-k~G~~~~~~vg~  571 (612)
                            ...|+.++. ++|++...+++.
T Consensus       110 ~~~~~~~~~~~~flId~~G~I~~~~~~~  137 (160)
T d2cx4a1         110 LKGLKMVAKRAVFIVKPDGTVAYKWVTD  137 (160)
T ss_dssp             ETTEEEEECCEEEEECTTSBEEEEEECS
T ss_pred             cccccccceeeEEEEcCCCEEEEEEEeC
Confidence                  234655544 899999888764

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.028  Score=43.10  Aligned_cols=58  Identities=16%  Similarity=0.205  Sum_probs=42.2

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchh--chhhhCCCCCCcEEEEEECCEEee
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGD--HFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d--~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |+-|..+||+.|..+...|++.     ++.|..++.+..++  ........+.+|.+++  ||+.++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~-----~i~y~~~~i~~~~~~~~~~~~~g~~tvP~i~i--~~~~i~   62 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR-----GFDFEMINVDRVPEAAEALRAQGFRQLPVVIA--GDLSWS   62 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHTTCCSSCEEEE--TTEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc-----CceeEEEeecCCHHHHHHHHhcCCCCCCEEEE--CCEEEE
Confidence            4557789999999999998775     56777777765432  2234568889999776  787654

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.78  E-value=0.046  Score=48.42  Aligned_cols=90  Identities=11%  Similarity=0.049  Sum_probs=62.1

Q ss_pred             CCceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch------------------------hchhhhCC
Q psy12938        497 RHITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG------------------------DHFSATFK  549 (612)
Q Consensus       497 ~~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~------------------------d~~~~~~~  549 (612)
                      ++.+||+.|| +.||+.|..-.+.|.++..+|.  +++++-|..+...                        ..++..|.
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~yg  122 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAG  122 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHT
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcC
Confidence            4569999999 8999999999999999988884  5888887654210                        12345666


Q ss_pred             C-----CCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        550 T-----SGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       550 i-----~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      +     ...|+.++. ++|++...+++....   +-..+++.+.|.
T Consensus       123 v~~~~~~~~r~~fvID~~G~I~~~~~~~~~~---~~~~~evl~~l~  165 (169)
T d2bmxa1         123 VLNADGVADRVTFIVDPNNEIQFVSATAGSV---GRNVDEVLRVLD  165 (169)
T ss_dssp             CBCTTSSBCEEEEEECTTSBEEEEEEECTTC---CCCHHHHHHHHH
T ss_pred             CCccCCccceeEEEEcCCCEEEEEEEcCCCC---CCCHHHHHHHHH
Confidence            5     566876666 689998877654222   224566666654

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.022  Score=46.20  Aligned_cols=40  Identities=20%  Similarity=0.284  Sum_probs=34.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHhCCCceEEEEeecC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   96 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~~~~~v~l~v~R~~   96 (612)
                      +|++||.|++|||..+.  +.++...+++ .+..+.|+|.|..
T Consensus        48 Gl~~GDiI~~ing~~V~--s~~dl~~~l~-~g~~v~l~v~R~g   87 (100)
T d1lcya1          48 GLRPGDVILAIGEQMVQ--NAEDVYEAVR-TQSQLAVQIRRGR   87 (100)
T ss_dssp             TCCTTCEEEEETTEECC--SHHHHHHHHT-TCSSEEEEEEETT
T ss_pred             CCCCCcEEEEECCEEcC--CHHHHHHHhc-CCCEEEEEEEECC
Confidence            69999999999999998  6678888885 6789999999864

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=94.59  E-value=0.027  Score=44.64  Aligned_cols=43  Identities=14%  Similarity=0.258  Sum_probs=35.5

Q ss_pred             hcccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecC
Q psy12938         52 RQSLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREK   96 (612)
Q Consensus        52 ~G~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~   96 (612)
                      ..+|++||.|++|||+.+.  +..+...+++.  .+..++|.|.|.-
T Consensus        34 ~aGl~~GDiI~~ing~~v~--~~~~~~~~~~~~~~~~~~~l~v~R~g   78 (87)
T d2i6va1          34 SIGLQDGDMAVALNGLDLT--DPNVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             HTTCCTTCEEEEETTEETT--CHHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             HCCCCCCCEEEEECCEEee--cHHHHHHHHHhhccccccEEEEEECC
Confidence            4479999999999999999  56667777765  5788999999863

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.015  Score=46.14  Aligned_cols=38  Identities=18%  Similarity=0.226  Sum_probs=33.9

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHhcCCCeEEEEEeecC
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLRNTSGLVRFLIGREK   40 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk~~~~~v~l~v~r~~   40 (612)
                      +||.|++|||..+.  +..++.++|++++..+.|+|.|..
T Consensus        45 ~GDvI~~ing~~v~--~~~~~~~~l~~~~~~v~l~v~R~~   82 (88)
T d1ky9b2          45 KGDVIIGANQQAVK--NIAELRKVLDSKPSVLALNIQRGD   82 (88)
T ss_dssp             SSCEEEEETTEECS--SHHHHHHHTTTCCSCCCEEEESSS
T ss_pred             CCcEEEEECCEEcC--CHHHHHHHHHhCCCEEEEEEEECC
Confidence            59999999999997  458899999999999999999874

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.011  Score=48.07  Aligned_cols=34  Identities=12%  Similarity=0.206  Sum_probs=30.5

Q ss_pred             CccceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        341 EKLGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       341 ~~~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      ...|++|.+|.|+++|++.| |++||    +||..+...
T Consensus        29 ~~~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~V~s~   66 (100)
T d1lcya1          29 VQHGVLIHKVILGSPAHRAG-LRPGDVILAIGEQMVQNA   66 (100)
T ss_dssp             CSSCEEEEEECTTSHHHHHT-CCTTCEEEEETTEECCSH
T ss_pred             CCCcEEEEEECCCchHhhcC-CCCCcEEEEECCEEcCCH
Confidence            34589999999999999999 99999    899998764

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.16  E-value=0.029  Score=45.93  Aligned_cols=40  Identities=10%  Similarity=0.128  Sum_probs=35.1

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeec
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGRE   95 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~   95 (612)
                      .|++||+|++|||..+.  +..+....|+.  .+..|+|.|.|.
T Consensus        19 ~L~~GD~I~~ing~~v~--~~~~l~~~i~~~~~G~~v~l~v~R~   60 (103)
T d2hgaa1          19 VLTPGLVIESINGMPTS--NLTTYSAALKTISVGEVINITTDQG   60 (103)
T ss_dssp             TSCTTCEEEEETTEECS--SHHHHHHHHTTCCTTCEEEEEETTE
T ss_pred             cCCCCCEEEEECCEEcC--CHHHHHHHHhhCCCCCEEEEEEEEC
Confidence            49999999999999998  78888899865  478899999885

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.0069  Score=48.89  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=30.1

Q ss_pred             cceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938        343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG  376 (612)
Q Consensus       343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~  376 (612)
                      .|+||..|.|||+|++.| |+.||    +||..+....
T Consensus        27 ~Gv~V~~V~~~spA~~aG-l~~gDvI~~i~g~~v~~~~   63 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSFA   63 (94)
T ss_dssp             CSEECCCCTTCSSSTTTT-CCTTCEECBSSSSBCCSSH
T ss_pred             CCcEEEECCCChhHHHhC-CCcccEEEEECCEEeCCHH
Confidence            489999999999999999 99999    8999988753

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.77  E-value=0.025  Score=45.27  Aligned_cols=35  Identities=9%  Similarity=-0.178  Sum_probs=30.1

Q ss_pred             CccceEEEEeccC--------chhcccCCccccc----CCceeeeec
Q psy12938        341 EKLGIFVKTITEA--------GAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       341 ~~~gi~i~~i~~g--------g~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      .+-++.|.+|++|        |||++.|-+|+||    |||.++.+.
T Consensus        10 ~~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~   56 (91)
T d1k32a1          10 DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAG   56 (91)
T ss_dssp             ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTT
T ss_pred             ECCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCc
Confidence            3447999999998        9999999449999    999999875

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=93.76  E-value=0.11  Score=39.79  Aligned_cols=71  Identities=14%  Similarity=0.172  Sum_probs=49.5

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCH
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFV  581 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~  581 (612)
                      |.-|..++|.-|..+...|.   +. ..+.|..+|++..+ .+.++|..+ +|.++ .-+|..++          -.|+.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~---~~-~~~~~~~vdI~~d~-~l~~~y~~~-IPVl~-~~~~~~l~----------w~fd~   64 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALA---QA-RAGAFFSVFIDDDA-ALESAYGLR-VPVLR-DPMGRELD----------WPFDA   64 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHH---HT-TCCCEEEEECTTCH-HHHHHHTTT-CSEEE-CTTCCEEE----------SCCCH
T ss_pred             EEEECCCCccHHHHHHHHHH---hc-cCCcEEEEEccCCH-HHHHHhCCe-eeEEE-ECCeeEEc----------CccCH
Confidence            45677899999988766543   22 34678888888765 788999877 69664 23333222          25788


Q ss_pred             HHHHHHHH
Q psy12938        582 EDVEAFLV  589 (612)
Q Consensus       582 ~~lE~~L~  589 (612)
                      ++|.+||.
T Consensus        65 ~~l~~~L~   72 (75)
T d1ttza_          65 PRLRAWLD   72 (75)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999996

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.74  E-value=0.14  Score=44.89  Aligned_cols=92  Identities=10%  Similarity=-0.002  Sum_probs=62.3

Q ss_pred             CCceEEEEEe-CCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch----------------------hchhhhCCCC--
Q psy12938        497 RHITVIAHLS-SPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG----------------------DHFSATFKTS--  551 (612)
Q Consensus       497 ~~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~----------------------d~~~~~~~i~--  551 (612)
                      ++.++|+.|| ..||+.|..--+.|..+..+|.++.++-|..+...                      ..+...|.+.  
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ygv~~~  120 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLIN  120 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHHHHHTCBCT
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhcccceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHHHhheeecc
Confidence            3458888888 67999999999999999999988999888765310                      0122344432  


Q ss_pred             --CCc---EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        552 --GLP---AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       552 --~lP---tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                        .+|   ++++=++|++....+  ....+.....+.+.+.|.+
T Consensus       121 ~~~~~~Ra~fvID~~G~I~y~~~--~~~~~~~~~~~~il~alk~  162 (163)
T d1psqa_         121 EWHLLARAVFVLDTDNTIRYVEY--VDNINSEPNFEAAIAAAKA  162 (163)
T ss_dssp             TTCSBCCEEEEECTTCBEEEEEE--CSBTTSCCCHHHHHHHHHH
T ss_pred             cccceeEEEEEECCCCEEEEEEE--cCCCCCCCCHHHHHHHHhc
Confidence              222   466668999986544  3444555566777777754

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.58  E-value=0.14  Score=39.45  Aligned_cols=72  Identities=15%  Similarity=0.285  Sum_probs=53.1

Q ss_pred             EEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCCCH
Q psy12938        503 AHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGYFV  581 (612)
Q Consensus       503 vhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~~~  581 (612)
                      |.++-++|..|..+....++.+++.. +..+.++.  ... ++ .+|.+...|+|++  ||+++.        -|.--+.
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~--d~~-ei-~~ygVmstPalvI--dg~vv~--------~G~vPs~   69 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK--EMD-QI-LEAGLTALPGLAV--DGELKI--------MGRVASK   69 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC--SHH-HH-HHHTCSSSSCEEE--TTEEEE--------CSSCCCH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCCceEEEEeC--CHH-HH-HHcCCcCCCEEEE--CCEEEE--------EecCCCH
Confidence            45668999999999999999888763 57777773  343 45 4799999999876  777765        2333356


Q ss_pred             HHHHHHH
Q psy12938        582 EDVEAFL  588 (612)
Q Consensus       582 ~~lE~~L  588 (612)
                      ++|..||
T Consensus        70 ~ei~~~L   76 (77)
T d1iloa_          70 EEIKKIL   76 (77)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            7787776

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.40  E-value=0.02  Score=46.91  Aligned_cols=31  Identities=10%  Similarity=0.184  Sum_probs=27.3

Q ss_pred             cceEEEEeccCchhcccCCccccc----CCceeeeec
Q psy12938        343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGM  375 (612)
Q Consensus       343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~  375 (612)
                      .|++|..|.+|+||++ + |++||    +||..+...
T Consensus         3 ~Gv~V~~V~~~sPA~~-~-L~~GD~I~~ing~~v~~~   37 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASK-V-LTPGLVIESINGMPTSNL   37 (103)
T ss_dssp             CCEEEEEECSSSGGGG-T-SCTTCEEEEETTEECSSH
T ss_pred             CcEEEEEECCCChHHh-c-CCCCCEEEEECCEEcCCH
Confidence            3899999999999975 6 99999    899998763

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.34  E-value=0.0085  Score=48.85  Aligned_cols=33  Identities=30%  Similarity=0.315  Sum_probs=29.6

Q ss_pred             cceEEEEeccCchhcccCCccccc----CCceeeeecc
Q psy12938        343 LGIFVKTITEAGAAARDGRIQGAE----GLGLSIIGMG  376 (612)
Q Consensus       343 ~gi~i~~i~~gg~a~~dgrl~~gD----vng~~~~g~~  376 (612)
                      .|++|.+|.++++|++.| |++||    +||..+....
T Consensus        26 ~Gv~V~~V~~~spA~~aG-l~~GDiI~~ing~~v~~~~   62 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAG-IQVNDLIISVDNKPAISAL   62 (99)
T ss_dssp             -CEECCCCCSSSTTTSSS-CCTTCEECBSSSSBCCCSH
T ss_pred             CccEEEEecCCCCHHHcC-CCcceEEEEECCEecccHH
Confidence            489999999999999999 99999    8999988753

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.21  Score=44.03  Aligned_cols=83  Identities=11%  Similarity=0.173  Sum_probs=55.5

Q ss_pred             CceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCC--Cch---------------------------------
Q psy12938        498 HITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLG--CVG---------------------------------  541 (612)
Q Consensus       498 ~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~--~~~---------------------------------  541 (612)
                      -..+|+-|+++.|+.|+.+.+.++.|..++. .++|..+..-  ...                                 
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~  115 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNVPAN  115 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHTTSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCCCSS
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhccceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccccch
Confidence            3367889999999999999999999987763 2444443311  000                                 


Q ss_pred             ------------hchhhhCCCCCCcEEEEEE-CCEEeeEEEeccccccCCCCHHHHHHHH
Q psy12938        542 ------------DHFSATFKTSGLPAMLAYR-GGEVVGNFVRLGEELGEGYFVEDVEAFL  588 (612)
Q Consensus       542 ------------d~~~~~~~i~~lPtllvyk-~G~~~~~~vg~~~~~g~~~~~~~lE~~L  588 (612)
                                  ..+...+.+.+-|||++.. +|. ...+.|+...       +.|+..|
T Consensus       116 ~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~-~~~~~G~~~~-------~~l~~il  167 (169)
T d1v58a1         116 VSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENT-LQQAVGLPDQ-------KTLNIIM  167 (169)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTE-EEEEESSCCH-------HHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCC-EEEecCCCCH-------HHHHHHh
Confidence                        0112468899999988855 554 4557776444       7777665

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.37  E-value=0.16  Score=44.50  Aligned_cols=42  Identities=10%  Similarity=0.097  Sum_probs=34.3

Q ss_pred             CCceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCC
Q psy12938        497 RHITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLG  538 (612)
Q Consensus       497 ~~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~  538 (612)
                      +..+||+.|| +.||+.|..-.+.|.++..+|.  .+.++-|..+
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d   76 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCD   76 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCC
Confidence            3458999999 9999999999999999988884  4667766554

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.091  Score=46.29  Aligned_cols=41  Identities=12%  Similarity=0.138  Sum_probs=35.5

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhcCCceEEEecCC
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSHTNVKFVSVPLG  538 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~  538 (612)
                      +.+||+.|| ..||+.|..-.+.|.+++.++.++.|+-|..+
T Consensus        44 GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~~~~vv~Is~d   85 (164)
T d1qxha_          44 GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISAD   85 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCeEEEEEecchhcccchHHHHHHHHHHHhhccceeeeEEcC
Confidence            447888888 56999999999999999999999999988765

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.97  E-value=0.26  Score=42.78  Aligned_cols=38  Identities=16%  Similarity=0.138  Sum_probs=30.8

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcCC---ceEEEec
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHTN---VKFVSVP  536 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~---vkF~ki~  536 (612)
                      .+.|+-|+...|+.|+.+.+.+..+.++|++   ++|+.+.
T Consensus        25 ~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (172)
T d1z6ma1          25 PVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKL   65 (172)
T ss_dssp             SEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeecc
Confidence            3679999999999999999999999988853   4555433

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=91.84  E-value=0.19  Score=37.89  Aligned_cols=58  Identities=22%  Similarity=0.438  Sum_probs=40.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCC--CchhchhhhCCCCCCcEEEEEECCEEee
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLG--CVGDHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~--~~~d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |+-|..++|+.|+.+...|+..     ++.|..++.+  .....+.+......+|.+  |-+|+.++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-----~i~~~~~~v~~~~~~~~~~~~~~~~tvP~i--~i~g~~IG   66 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-----GLSFEEIILGHDATIVSVRAVSGRTTVPQV--FIGGKHIG   66 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEETTTTCCHHHHHHHTCCSSSCEE--EETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-----CCCeEEEEccCcHHHHHHHHHhCCccCCEE--EECCEEEE
Confidence            4567889999999999999886     4555555443  322244455677899986  45888776

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=91.84  E-value=0.13  Score=39.67  Aligned_cols=58  Identities=14%  Similarity=0.357  Sum_probs=40.7

Q ss_pred             EEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCch---hchhhhCCCCCCcEEEEEECCEEee
Q psy12938        502 IAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVG---DHFSATFKTSGLPAMLAYRGGEVVG  566 (612)
Q Consensus       502 vvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~---d~~~~~~~i~~lPtllvyk~G~~~~  566 (612)
                      |.-|..+||+.|+.....|+..     ++.|..++.+..+   +++......+.+|.+  |-+|+.++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-----~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i--~i~~~~IG   63 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-----GVSFQELPIDGNAAKREEMIKRSGRTTVPQI--FIDAQHIG   63 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-----TCCCEEEECTTCSHHHHHHHHHHSSCCSCEE--EETTEEEE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-----CCCeEEEeccchHHHHHHHHHHhCCCCCCeE--EECCEEEe
Confidence            3446779999999999998876     4566666665332   233445577899976  56998766

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.44  E-value=0.36  Score=42.35  Aligned_cols=41  Identities=12%  Similarity=0.325  Sum_probs=32.5

Q ss_pred             CCceEEEEEeCCCCh-hhhhhHHHHHHHHhhc----CCceEEEecC
Q psy12938        497 RHITVIAHLSSPSLP-ACRALNSSLAELSRSH----TNVKFVSVPL  537 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~-~C~~m~~~l~~LA~~~----~~vkF~ki~~  537 (612)
                      ++.+|||.||..||+ .|..+.+.|..+.+++    .++.|+-|..
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isi   75 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSV   75 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhcccccccccccccc
Confidence            456999999999997 6999988888876654    4688887754

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.044  Score=44.35  Aligned_cols=42  Identities=24%  Similarity=0.392  Sum_probs=29.9

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~~   97 (612)
                      +|++||.|++|||..+.+.  .+...+|..  .+..+.|+|.|...
T Consensus        43 Gl~~GDiI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~   86 (99)
T d1sota1          43 GIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDK   86 (99)
T ss_dssp             SCCTTCEECBSSSSBCCCS--HHHHHHHHHSCTTCEEEECC-----
T ss_pred             CCCcceEEEEECCEecccH--HHHHHHHHcCCCCCEEEEEEEECCE
Confidence            6999999999999999865  445555644  56889999998644

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=90.39  E-value=0.14  Score=40.30  Aligned_cols=38  Identities=13%  Similarity=0.257  Sum_probs=29.7

Q ss_pred             CCCeEEEECCeecCCCCHHHHHHHHh--cCCCeEEEEEeecC
Q psy12938          1 VNDQIIEVDGKSLVGVTQEYAASVLR--NTSGLVRFLIGREK   40 (612)
Q Consensus         1 ~gD~Il~VNg~~l~~~th~~av~~Lk--~~~~~v~l~v~r~~   40 (612)
                      +||.|++|||..+.+..  +...++.  ..+..+.|+|.|+.
T Consensus        39 ~GDiI~~ing~~v~~~~--~~~~~~~~~~~~~~~~l~v~R~g   78 (87)
T d2i6va1          39 DGDMAVALNGLDLTDPN--VMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             TTCEEEEETTEETTCHH--HHHHHHHTGGGCSEEEEEEEETT
T ss_pred             CCCEEEEECCEEeecHH--HHHHHHHhhccccccEEEEEECC
Confidence            59999999999998764  4445544  36779999999863

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=90.01  E-value=0.57  Score=39.21  Aligned_cols=85  Identities=12%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecCCCchhchhhhCCC--CCCcEEEEEECCEEeeEEEecccccc
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPLGCVGDHFSATFKT--SGLPAMLAYRGGEVVGNFVRLGEELG  576 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~~~~~d~~~~~~~i--~~lPtllvyk~G~~~~~~vg~~~~~g  576 (612)
                      +.++.|++.. .....+...|.++|++|. .+.|+.+|.+..+ .....|.+  ..+|+++++....... + -+  ...
T Consensus        25 pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~-~~l~~~gl~~~~~P~~~i~~~~~~~~-~-~~--~~~   98 (133)
T d2djka1          25 PLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFG-AHAGNLNLKTDKFPAFAIQEVAKNQK-F-PF--DQE   98 (133)
T ss_dssp             CEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG-GGTTTTTCCSSSSSEEEEECTTTCCB-C-CC--CSS
T ss_pred             CEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhH-HHHHHhcCCcccCCcEEEEEcCCCce-e-cC--Ccc
Confidence            5677677654 467888999999999996 5999999988765 44566666  5789999885322111 0 01  112


Q ss_pred             CCCCHHHHHHHHHH
Q psy12938        577 EGYFVEDVEAFLVE  590 (612)
Q Consensus       577 ~~~~~~~lE~~L~~  590 (612)
                      ..++.+.|++|+..
T Consensus        99 ~~i~~~~i~~Fi~d  112 (133)
T d2djka1          99 KEITFEAIKAFVDD  112 (133)
T ss_dssp             SCCCHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHH
Confidence            46889999999975

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.23  E-value=0.66  Score=39.53  Aligned_cols=88  Identities=11%  Similarity=0.091  Sum_probs=54.4

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch----------------------hchhhhCCCC----
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG----------------------DHFSATFKTS----  551 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~----------------------d~~~~~~~i~----  551 (612)
                      .|++.|++.||+.|..-.+.|.++.++|.  ++.++-|..+...                      -.+...|.+.    
T Consensus        32 vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ygv~~~~~  111 (153)
T d1xvwa1          32 VLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNEQA  111 (153)
T ss_dssp             EEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHHHHTTCEETTT
T ss_pred             EEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhHHHhhhhhhcc
Confidence            44445558999999998888988888885  5788877654311                      0123455542    


Q ss_pred             CC--cE-EEEEECCEEeeEEEeccccccCCCCHHHHHHHHHH
Q psy12938        552 GL--PA-MLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLVE  590 (612)
Q Consensus       552 ~l--Pt-llvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~~  590 (612)
                      ++  |+ +++=++|++....+..   .+..-...+++..|..
T Consensus       112 g~~~r~tfvID~~G~I~~~~~~~---~~~~~~~~~~~~~L~a  150 (153)
T d1xvwa1         112 GIANRGTFVVDRSGIIRFAEMKQ---PGEVRDQRLWTDALAA  150 (153)
T ss_dssp             TEECSEEEEECTTSBEEEEEECC---TTCCCCHHHHHHHHHH
T ss_pred             CceeeeEEEECCCCEEEEEEEeC---CCcccCHHHHHHHHHh
Confidence            22  34 4555899887655432   2223345677777754

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.00  E-value=0.049  Score=43.54  Aligned_cols=42  Identities=12%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             ccCCCCEEEEECCeecCCCCHHHHHHHHHh--CCCceEEEEeecCC
Q psy12938         54 SLQVNDQIIEVDGKSLVGVTQEYAASVLRN--TSGLVRFLIGREKD   97 (612)
Q Consensus        54 ~L~~GD~il~VNg~~l~~~s~~~a~~~l~~--~~~~v~l~v~R~~~   97 (612)
                      +|+.||.|++|||+.+.+.  .+...+|..  .+..+.|+|.|...
T Consensus        44 Gl~~gDvI~~i~g~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~   87 (94)
T d1ky9a1          44 GIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGK   87 (94)
T ss_dssp             TCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSC
T ss_pred             CCCcccEEEEECCEEeCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence            6999999999999999854  455666755  46889999998643

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.40  E-value=0.84  Score=36.74  Aligned_cols=69  Identities=16%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             HHHHhhccCCCCceEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEe-
Q psy12938        487 LFLSEIDSEPRHITVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVV-  565 (612)
Q Consensus       487 ~~~~~V~~~~~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~-  565 (612)
                      .|++.+++     +|.+.++.+.|..|..|...|+++|.--+.+.|..-+.           ...-.|++.+.++|+.. 
T Consensus        12 ~~f~~l~~-----~V~l~~~~~~~~~s~el~~~l~eva~lSdkI~~~~~~~-----------~~~r~Ps~~i~~~g~~~g   75 (102)
T d1hyua3          12 AYLEKLTK-----PVELIATLDDSAKSAEIKELLAEIAELSDKVTFKEDNT-----------LPVRKPSFLITNPGSQQG   75 (102)
T ss_dssp             HHHTTCCS-----CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEECTT-----------SSSCSSEEEEECTTCCCS
T ss_pred             HHHHhCCC-----CEEEEEEeCCChhHHHHHHHHHHHHhhCCCeEEEEcCC-----------CCCCCCeEEEecCCCEee
Confidence            35555544     68888888999999999999999999988887764221           12335999999998653 


Q ss_pred             eEEEec
Q psy12938        566 GNFVRL  571 (612)
Q Consensus       566 ~~~vg~  571 (612)
                      -+|.|+
T Consensus        76 I~F~Gi   81 (102)
T d1hyua3          76 PRFAGS   81 (102)
T ss_dssp             CEEESC
T ss_pred             eEEecC
Confidence            335554

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=87.95  E-value=1.5  Score=40.65  Aligned_cols=90  Identities=12%  Similarity=0.169  Sum_probs=60.4

Q ss_pred             CCceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCc--------------------------hhchhhh
Q psy12938        497 RHITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCV--------------------------GDHFSAT  547 (612)
Q Consensus       497 ~~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~--------------------------~d~~~~~  547 (612)
                      ++.|||+.|| ++||+.|..-...|.+++.+|.  +++.+-|..+..                          ...++..
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~vak~  107 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVARR  107 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHHHH
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHHHH
Confidence            3558999999 8999999998888888877773  577776654421                          0134566


Q ss_pred             CCC-------CCCcEEEEE-ECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        548 FKT-------SGLPAMLAY-RGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       548 ~~i-------~~lPtllvy-k~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      |++       ..+|+++|. .+|.+...++.-.. .|.  ..++|-+.|.
T Consensus       108 yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~-~gR--~~dEiLr~l~  154 (237)
T d2zcta1         108 LGLLHAESATHTVRGVFIVDARGVIRTMLYYPME-LGR--LVDEILRIVK  154 (237)
T ss_dssp             TTCC----CCTTCCEEEEECTTSBEEEEEECCTT-BCC--CHHHHHHHHH
T ss_pred             cCCccccccccceeeeEEECCCCEEEEEEEeCCC-CCC--CHHHHHHHHH
Confidence            776       456877666 88988776665422 233  3456655553

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.05  E-value=1.8  Score=34.81  Aligned_cols=80  Identities=6%  Similarity=0.079  Sum_probs=57.4

Q ss_pred             eEEEEEeCCCChhhhhhHHHHHHHHhhcCCceEEEecCCCchhchhhhCCCCCCcEEEEEECCEEeeEEEeccccccCCC
Q psy12938        500 TVIAHLSSPSLPACRALNSSLAELSRSHTNVKFVSVPLGCVGDHFSATFKTSGLPAMLAYRGGEVVGNFVRLGEELGEGY  579 (612)
Q Consensus       500 ~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~~~~d~~~~~~~i~~lPtllvyk~G~~~~~~vg~~~~~g~~~  579 (612)
                      .+||=|+.+.-.   .....+..+|+.+.+..|.-..-.    .+...|++.. |++++||.......      ..+..+
T Consensus        20 v~VVGfF~~~~~---~~~~~F~~~A~~~~d~~F~~t~~~----~v~~~~~v~~-~~Ivl~k~~de~~~------~~~~~~   85 (110)
T d1bjxa_          20 VAVIGFFKDVES---DSAKQFLQAAEAIDDIPFGITSNS----DVFSKYQLDK-DGVVLFKKFDEGRN------NFEGEV   85 (110)
T ss_dssp             EEEEEECTTTTS---HHHHHHHHHHHHCSSSCEEEECCS----HHHHHTTCSS-CEEEEEESSSSSBC------CCCSCC
T ss_pred             eEEEEEEcCCCc---hHHHHHHHHHHhCcCceEEEECCH----HHHHHcCCCC-CeEEEeccCCcccc------ccCCCC
Confidence            677777765322   456778899999988888765433    4567888865 99999998653321      123578


Q ss_pred             CHHHHHHHHHHCCc
Q psy12938        580 FVEDVEAFLVEAGL  593 (612)
Q Consensus       580 ~~~~lE~~L~~~g~  593 (612)
                      +.+.|++|+..+.+
T Consensus        86 ~~~~l~~fi~~~~~   99 (110)
T d1bjxa_          86 TKENLLDFIKHNQL   99 (110)
T ss_dssp             CHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHHcCc
Confidence            99999999987765

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=84.56  E-value=0.43  Score=41.82  Aligned_cols=76  Identities=12%  Similarity=0.034  Sum_probs=53.8

Q ss_pred             CCceEEEEEeCC-CChhhhhhHHHHHHHHhhcC--CceEEEecCCCch------------------------hchhhhCC
Q psy12938        497 RHITVIAHLSSP-SLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG------------------------DHFSATFK  549 (612)
Q Consensus       497 ~~~~Vvvhfy~~-~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~------------------------d~~~~~~~  549 (612)
                      ++.+||+.||.. ||+.|..--+.|.++..+|.  ++.++-|..+...                        ..++..|.
T Consensus        30 ~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~~~~fpll~D~~~~v~~~yg  109 (166)
T d1we0a1          30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISRQFD  109 (166)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHHHTT
T ss_pred             CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhcccccccccCcccHHHHHhC
Confidence            455899999976 99999999999999998884  6888888765321                        01234565


Q ss_pred             CCC----C--c-EEEEEECCEEeeEEEecc
Q psy12938        550 TSG----L--P-AMLAYRGGEVVGNFVRLG  572 (612)
Q Consensus       550 i~~----l--P-tllvyk~G~~~~~~vg~~  572 (612)
                      +..    +  | |+++=++|.+....++..
T Consensus       110 v~~~~~~~~~r~tfvID~~G~I~~~~i~~~  139 (166)
T d1we0a1         110 VLNEETGLADRGTFIIDPDGVIQAIEINAD  139 (166)
T ss_dssp             CEETTTTEECEEEEEECTTSBEEEEEEECT
T ss_pred             CCccccCcccceEEEECCCCcEEEEEEcCC
Confidence            431    2  2 566678899988776653

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.68  E-value=0.72  Score=40.16  Aligned_cols=41  Identities=15%  Similarity=0.260  Sum_probs=29.4

Q ss_pred             CCceEEEEEeC-CCChhhhhhHHHHHHHHhhcCCceEEEecCC
Q psy12938        497 RHITVIAHLSS-PSLPACRALNSSLAELSRSHTNVKFVSVPLG  538 (612)
Q Consensus       497 ~~~~Vvvhfy~-~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~  538 (612)
                      ++.+||+.||+ .||+.|..--+.|.+..+++ +++++-|..+
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~-g~~vv~Is~d   83 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS-GATVLCVSKD   83 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT-TCEEEEEESS
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc-cccccccccc
Confidence            34479999995 58888998777777766554 5777776654

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=83.60  E-value=1.8  Score=37.66  Aligned_cols=73  Identities=11%  Similarity=0.104  Sum_probs=49.2

Q ss_pred             ceEEEEEe-CCCChhhhhhHHHHHHHHhhc--CCceEEEecCCCch---------------------------hchhhhC
Q psy12938        499 ITVIAHLS-SPSLPACRALNSSLAELSRSH--TNVKFVSVPLGCVG---------------------------DHFSATF  548 (612)
Q Consensus       499 ~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~--~~vkF~ki~~~~~~---------------------------d~~~~~~  548 (612)
                      .+||+.|| +.||+.|..-...|.++..++  .++..+-|..+...                           ..+...|
T Consensus        34 ~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~y  113 (170)
T d1zofa1          34 NGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDY  113 (170)
T ss_dssp             SEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHT
T ss_pred             CEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHHHHc
Confidence            48999999 899999988877777777666  35666666654210                           1233556


Q ss_pred             CCC---CC--c-EEEEEECCEEeeEEEec
Q psy12938        549 KTS---GL--P-AMLAYRGGEVVGNFVRL  571 (612)
Q Consensus       549 ~i~---~l--P-tllvyk~G~~~~~~vg~  571 (612)
                      .+.   ++  | |+++=++|++...++.-
T Consensus       114 gv~~~~~~~~r~tfvID~~G~I~~~~~~~  142 (170)
T d1zofa1         114 DVLFEEAIALRGAFLIDKNMKVRHAVIND  142 (170)
T ss_dssp             TCEETTTEECEEEEEEETTTEEEEEEEES
T ss_pred             CCCccccceeEEEEEEcCCCeEEEEEEeC
Confidence            552   22  3 56677999998777654

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.99  E-value=1.6  Score=36.15  Aligned_cols=90  Identities=11%  Similarity=0.114  Sum_probs=61.5

Q ss_pred             ceEEEEEeCCCChhhhhhHHHHHHHHhhcCC-ceEEEecCCCchhchhhhCCCC-CCcEEEEEECCEEeeEEEecc--c-
Q psy12938        499 ITVIAHLSSPSLPACRALNSSLAELSRSHTN-VKFVSVPLGCVGDHFSATFKTS-GLPAMLAYRGGEVVGNFVRLG--E-  573 (612)
Q Consensus       499 ~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~~-vkF~ki~~~~~~d~~~~~~~i~-~lPtllvyk~G~~~~~~vg~~--~-  573 (612)
                      .++++-||.+. ..-..+...+.++|++|.+ +.|+-+|++..+ ...+.|... .+|++++...-.... +.-..  . 
T Consensus        18 ~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkgki~Fv~~D~~~~~-~~l~~fgl~e~~P~~~i~~~~~~~k-y~~~~~~~~   94 (125)
T d2b5ea3          18 LPLGYLFYNDE-EELEEYKPLFTELAKKNRGLMNFVSIDARKFG-RHAGNLNMKEQFPLFAIHDMTEDLK-YGLPQLSEE   94 (125)
T ss_dssp             SCEEEEEESSH-HHHHHHHHHHHHHHHHTTTTCEEEEEEHHHHT-THHHHTTCCSCSSEEEEEETTTTEE-EECCCCCHH
T ss_pred             CCEEEEEeCCh-HHHHHHHHHHHHHHHHhcCeeEEEEEchHHhH-HHHHHcCCCccCCcEEEEecccCcc-cccchhhhh
Confidence            46777788864 3456788889999999965 999999988665 455777664 589998876432221 22110  0 


Q ss_pred             -----cccCCCCHHHHHHHHHHC
Q psy12938        574 -----ELGEGYFVEDVEAFLVEA  591 (612)
Q Consensus       574 -----~~g~~~~~~~lE~~L~~~  591 (612)
                           .-...++.+.|+.|+..+
T Consensus        95 ~~~~~~~~~e~t~~~i~~F~~d~  117 (125)
T d2b5ea3          95 AFDELSDKIVLESKAIESLVKDF  117 (125)
T ss_dssp             HHHTCCSCCCCCHHHHHHHHHHH
T ss_pred             hcccccccccCCHHHHHHHHHHH
Confidence                 012479999999999753

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=82.96  E-value=0.9  Score=39.45  Aligned_cols=41  Identities=5%  Similarity=0.080  Sum_probs=33.9

Q ss_pred             CceEEEEEeC-CCChhhhhhHHHHHHHHhhcCCceEEEecCC
Q psy12938        498 HITVIAHLSS-PSLPACRALNSSLAELSRSHTNVKFVSVPLG  538 (612)
Q Consensus       498 ~~~Vvvhfy~-~~~~~C~~m~~~l~~LA~~~~~vkF~ki~~~  538 (612)
                      +.+||+.||. .||+.|..--+.|.++..+|.++.|+-|..+
T Consensus        42 Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~~~vi~iS~d   83 (164)
T d1q98a_          42 SKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSNTIVLCISAD   83 (164)
T ss_dssp             TSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTTEEEEEEESS
T ss_pred             CcEEEEEecCccccCcccHHHHHHHHHHHHhccceEEeecCC
Confidence            4489999995 5777899988999999999988888888654

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=82.76  E-value=0.9  Score=39.21  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=33.9

Q ss_pred             CCceEEEEEeCCCChhhhhhHHHHHHHHhhcC-CceEEEecC
Q psy12938        497 RHITVIAHLSSPSLPACRALNSSLAELSRSHT-NVKFVSVPL  537 (612)
Q Consensus       497 ~~~~Vvvhfy~~~~~~C~~m~~~l~~LA~~~~-~vkF~ki~~  537 (612)
                      ...+.||.|+.-.|+.|+.+.+.+..|.++++ .++|.....
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccccceeEEec
Confidence            44567888999999999999999999999997 477766543

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.21  E-value=0.87  Score=39.32  Aligned_cols=89  Identities=11%  Similarity=0.028  Sum_probs=57.9

Q ss_pred             CceEEEEEe-CCCChhhhhhHHHHHHHHhhcC--CceEEEecCCCch---------------------------hchhhh
Q psy12938        498 HITVIAHLS-SPSLPACRALNSSLAELSRSHT--NVKFVSVPLGCVG---------------------------DHFSAT  547 (612)
Q Consensus       498 ~~~Vvvhfy-~~~~~~C~~m~~~l~~LA~~~~--~vkF~ki~~~~~~---------------------------d~~~~~  547 (612)
                      +.+||+.|| +.||+.|..-...|.++..+|.  ++..+-|..+...                           ..+...
T Consensus        26 Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~~~  105 (158)
T d1zyea1          26 GKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRD  105 (158)
T ss_dssp             TSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHH
T ss_pred             CCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHHHH
Confidence            458999999 8899999988888888888774  5777766554210                           013355


Q ss_pred             CCCCCC------c-EEEEEECCEEeeEEEeccccccCCCCHHHHHHHHH
Q psy12938        548 FKTSGL------P-AMLAYRGGEVVGNFVRLGEELGEGYFVEDVEAFLV  589 (612)
Q Consensus       548 ~~i~~l------P-tllvyk~G~~~~~~vg~~~~~g~~~~~~~lE~~L~  589 (612)
                      |.+...      | |+++=++|.+...++.-... +.  ..+++-++|.
T Consensus       106 ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~-~~--~~~EiL~~lk  151 (158)
T d1zyea1         106 YGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPV-GR--SVEETLRLVK  151 (158)
T ss_dssp             TTCEETTTTEECEEEEEECTTSBEEEEEEECTTC-CC--CHHHHHHHHH
T ss_pred             HHhccccCCccccEEEEECCCCEEEEEEEeCCCC-CC--CHHHHHHHHH
Confidence            655422      2 55666999998877664332 22  3455555554