Psyllid ID: psy12968

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400--
MDIERELEDGNDTKANEYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMASNKKKYDSPYLDLFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREMGYVHHEPRPQMRHPRPPPHMVAARPAPGLLAPPRMQHAAPPHMVRPPHPPPPPAASRGKVLSILDRARAAMEKPAPSAGVYEYEDPHAAHAYYETTASYDPAMYDPYASTAGDYYDTSASYYETAAPAPLPSTSSRTGGSGWKSSSGYAEHHSSSRSKSSAPIRSSSSEKVVNASLVGLQGAQSTEYGYEDRKRRLDPYSDVESKKFVGSRVVKYK
cccHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEcccccccccccEEEEcccccHHHHHHHHHccEEEEccccccccccHHHHHHccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcc
cccccHcccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEccccccccEEEEEccccccHHHHHHHHcccEEEEEcccccccHHHHHHHHcccccccHHHccccEEEEEEEccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHcccccccccccccccccEEEEEc
MDIEReledgndtKANEYVKTLLKEkmtldsdshsytLKLLDDEINKAMAsnkkkydspyldlfrekpilvkvkvlvpvkehprfnfvgkllgpkgnsLRRLQEETMTKMSilgkgsmrdrskeeelrkegdpknahLVEDLHVqvsalappaEAHARIAYALSELRkyiipdvndEIRQEQFRemgyvhheprpqmrhprppphmvaarpapgllapprmqhaapphmvrpphpppppaasrgkVLSILDRARAAmekpapsagvyeyedphaahayyettasydpamydpyastagdyydtsasyyetaapaplpstssrtggsgwksssgyaehhsssrskssapirssssekVVNASLVGlqgaqsteygyedrkrrldpysdveskkfvgsrvvkyk
mdiereledgndtkaNEYVKTLLkekmtldsdsHSYTLKLLDDEINKAMasnkkkydspylDLFREKPILVKVKVlvpvkehprfnfvgkllgpkgnsLRRLQEEtmtkmsilgkgsmrdrskeeelrkegdpknaHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREMGYVHHEPRPQMRHPRPPPHMVAARPAPGLLAPPRMQHAAPPHMVRPPHPPPPPAASRGKVLSILDRARAAMEKPAPSAGVYEYEDPHAAHAYYETTASYDPAMYDPYASTAGDYYDTSASYYETAAPAPLPSTSSRTGGSGWKSSSGyaehhsssrskssapirsssseKVVNaslvglqgaqsteygyedrkrrldpysdveskkfvgsrvvkyk
MDIERELEDGNDTKANEYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMASNKKKYDSPYLDLFREkpilvkvkvlvpvkEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREMGYVhheprpqmrhprppphmvaarpapgllapprMQhaapphmvrpphpppppaaSRGKVLSILDRARAAMEKPAPSAGVYEYEDPHAAHAYYETTASYDPAMYDPYASTAGDYYDTSASYYETAAPAPLPSTSSRTGGSGWKsssgyaehhsssrskssapirssssekVVNASLVGLQGAQSTEYGYEDRKRRLDPYSDVESKKFVGSRVVKYK
***********************************YTLKLLD*************YDSPYLDLFREKPILVKVKVLVPVKEHPRFNFVGKLLG*********************************************VEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQ*************************************************************************************VYEYEDPHAAHAYYETTASYDPAMYDPYASTAGDYYDTSASYY**********************************************************************************************
********************TLLKEKMTLDSDSHSYTLKLLDDEIN*********************PILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSIL************************LVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREM*********************************************************************************************************************************************************************************************************VESKKFVGSRVVKY*
********DGNDTKANEYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMASNKKKYDSPYLDLFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGK*****************PKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREMGYVHHEPRPQMRHPRPPPHMVAARPAPGLLAPPRMQHAAPPHMVRPPHPPPPPAASRGKVLSILDRARAAMEKPAPSAGVYEYEDPHAAHAYYETTASYDPAMYDPYASTAGDYYDTSASYYETAAPA*******************************************VNASLVGLQGAQSTEYGYEDRKRRLDPYSDVESKKF*********
**************ANEYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMASNKKKYDSPYLDLFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREMGYVHHEP****************************************************VLSILDRARAAMEKPAPSAGVYEYEDPHAAHAYYETTASYDPAMYDPYASTAGDYYDTSASYYETAAPA*****************************************KVVNASLVGLQGAQSTEYGYEDRKRRLDPYSDVESKKFVGSRVVKYK
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MDIERELEDGNDTKANEYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMASNKKKYDSPYLDLFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREMGYVHHEPRPQMRHPRPPPHMVAARPAPGLLAPPRMQHAAPPHMVRPPHPPPPPAASRGKVLSILDRARAAMEKPAPSAGVYEYEDPHAAHAYYETTASYDPAMYDPYASTAGDYYDTSASYYETAAPAPLPSTSSRTGGSGWKSSSGYAEHHSSSRSKSSAPIRSSSSEKVVNASLVGLQGAQSTEYGYEDRKRRLDPYSDVESKKFVGSRVVKYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query402 2.2.26 [Sep-21-2011]
O75525346 KH domain-containing, RNA yes N/A 0.696 0.809 0.415 8e-52
Q9R226346 KH domain-containing, RNA yes N/A 0.694 0.806 0.413 4e-51
Q9JLP1346 KH domain-containing, RNA yes N/A 0.694 0.806 0.407 5e-50
Q5VWX1349 KH domain-containing, RNA no N/A 0.427 0.492 0.554 9e-50
Q9WU01349 KH domain-containing, RNA no N/A 0.427 0.492 0.554 1e-49
Q07666443 KH domain-containing, RNA no N/A 0.445 0.404 0.524 1e-49
Q91V33443 KH domain-containing, RNA no N/A 0.445 0.404 0.524 2e-49
Q60749443 KH domain-containing, RNA no N/A 0.445 0.404 0.524 2e-49
Q920F3349 KH domain-containing, RNA no N/A 0.427 0.492 0.548 3e-49
Q08BJ2346 KH domain-containing, RNA yes N/A 0.572 0.664 0.447 5e-49
>sp|O75525|KHDR3_HUMAN KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1 Back     alignment and function desciption
 Score =  204 bits (520), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 127/306 (41%), Positives = 178/306 (58%), Gaps = 26/306 (8%)

Query: 17  EYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMASNKKKYDSPYLDLFREKPILVKVKVL 76
           +Y+  L+ EK +LD  S ++ L+L++ EI K     + K +  Y+D+   K + +  KVL
Sbjct: 4   KYLPELMAEKDSLDP-SFTHALRLVNQEIEK-FQKGEGKDEEKYIDVVINKNMKLGQKVL 61

Query: 77  VPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNA 136
           +PVK+ P+FNFVGKLLGP+GNSL+RLQEET+TKMSILGKGSMRD++KEEELRK G+ K  
Sbjct: 62  IPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYF 121

Query: 137 HLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREMGYVH----HE 192
           HL +DLHV +   APPAEA+AR+ +AL E++K++IPD NDEIRQ Q +E+ Y++    + 
Sbjct: 122 HLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNGGSENA 181

Query: 193 PRPQMRHPRPPPHMVAARPAPGLLAPPRMQHAAPPHMVRPPHPPPPPA-------ASRGK 245
             P +R    P       PAP +        A P  +V P   P P          SRG+
Sbjct: 182 DVPVVRG--KPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVLSTRGPVSRGR 239

Query: 246 VLSILDRARAA---------MEKPAPSAGVYEYEDPHAAHAYYETTASYDPAMYDPYAST 296
            L +  RAR                 + G Y+Y+D +      ++  SYD +   P A +
Sbjct: 240 GL-LTPRARGVPPTGYRPPPPPPTQETYGEYDYDDGYGTAYDEQSYDSYDNSYSTP-AQS 297

Query: 297 AGDYYD 302
             DYYD
Sbjct: 298 GADYYD 303
RNA-binding protein that plays a role in the regulation of alternative splicing and influences mRNA splice site selection and exon inclusion. May play a role as a negative regulator of cell growth. Inhibits cell proliferation. Involved in splice site selection of vascular endothelial growth factor. Induces an increased concentration-dependent incorporation of exon in CD44 pre-mRNA by direct binding to purine-rich exonic enhancer. RNA-binding abilities are down-regulated by tyrosine kinase PTK6. Involved in post-transcriptional regulation of HIV-1 gene expression. Binds preferentially to the 5'-[AU]UAAA-3' motif in vitro.
Homo sapiens (taxid: 9606)
>sp|Q9R226|KHDR3_MOUSE KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1 Back     alignment and function description
>sp|Q9JLP1|KHDR3_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1 Back     alignment and function description
>sp|Q5VWX1|KHDR2_HUMAN KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1 Back     alignment and function description
>sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1 Back     alignment and function description
>sp|Q07666|KHDR1_HUMAN KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1 Back     alignment and function description
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1 Back     alignment and function description
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2 Back     alignment and function description
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1 Back     alignment and function description
>sp|Q08BJ2|KHDR2_DANRE KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
307187354422 KH domain-containing, RNA-binding, signa 0.835 0.796 0.439 4e-69
380028172389 PREDICTED: KH domain-containing, RNA-bin 0.664 0.686 0.488 1e-68
328780566389 PREDICTED: KH domain-containing, RNA-bin 0.664 0.686 0.488 2e-68
332028300415 KH domain-containing, RNA-binding, signa 0.858 0.831 0.431 2e-68
380028170418 PREDICTED: KH domain-containing, RNA-bin 0.696 0.669 0.506 4e-68
350398608389 PREDICTED: KH domain-containing, RNA-bin 0.689 0.712 0.477 5e-68
282158097367 quaking related [Tribolium castaneum] 0.746 0.817 0.477 7e-68
328780564397 PREDICTED: KH domain-containing, RNA-bin 0.696 0.705 0.506 8e-68
383850550387 PREDICTED: KH domain-containing, RNA-bin 0.721 0.749 0.485 2e-67
340709880397 PREDICTED: KH domain-containing, RNA-bin 0.721 0.730 0.493 2e-67
>gi|307187354|gb|EFN72482.1| KH domain-containing, RNA-binding, signal transduction-associated protein 3 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 168/382 (43%), Positives = 223/382 (58%), Gaps = 46/382 (12%)

Query: 1   MDIERELEDGNDTKANEYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMASNKKKYDSPY 60
           MD E + ++    KA EYV+ LL+EK+ LD+      L+LLD EI K  A  K   D  Y
Sbjct: 29  MDKESDEKEHQIDKAGEYVRELLQEKLELDNQKSPIALRLLDQEIQKTQAIGKPLRDPKY 88

Query: 61  LDLFREKPILVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRD 120
           +D++REKP+ + VKVLVP++EHP+FNFVGKLLGPKGNS++RLQEETM KM++LG+GSM+D
Sbjct: 89  VDIYREKPVRISVKVLVPIREHPKFNFVGKLLGPKGNSMKRLQEETMCKMAVLGRGSMKD 148

Query: 121 RSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQ 180
           R KEEE R   DPK AHL +DLHV+++A+APPAEA+ARIA+AL+E+RKY+IPD ND IRQ
Sbjct: 149 RQKEEECRASLDPKYAHLSDDLHVEITAIAPPAEAYARIAFALAEVRKYLIPDNNDNIRQ 208

Query: 181 EQFREMGY-----VHHEPRPQMRHPRPPPHMVAARPAPGLLAPPRMQHAAPPHMVRPPHP 235
           EQ REM       +  + RP MR P       ++ P  G +  P  +    P   R   P
Sbjct: 209 EQMREMEMNISSDISDDRRPSMRGP-------SSGPGTGNILRPAARPTL-PRTSRAILP 260

Query: 236 PPP--------PAASRGKVLSILDRARAAMEK----------PAPSAGVYEYEDPHAAHA 277
           PPP        P   + KV SILDRARAAM++          P   AG +   D H +  
Sbjct: 261 PPPTNRGPLSRPVPPKSKVFSILDRARAAMDQNFSYETPTPPPTNRAGSHHDYDYHGSST 320

Query: 278 YYETTASYDPAMYDPYAS-TAGDYYDTSA-----SYYETAAPAPLPSTSSRTGGSGWKSS 331
              ++A Y    Y P +  T  +Y D SA      YYE++     P  SS      WKS 
Sbjct: 321 ---SSARYGDRHYTPSSGYTTYEYEDDSAPHSSHDYYESSD---YPEESS---SRAWKSY 371

Query: 332 SGYAEHHSSSRSKSSAPIRSSS 353
                  ++SR +++   R S+
Sbjct: 372 KTTTTSGTASRYRTTPYTRPSN 393

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380028172|ref|XP_003697782.1| PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 3-like isoform 2 [Apis florea] Back     alignment and taxonomy information
>gi|328780566|ref|XP_003249822.1| PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 3-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|332028300|gb|EGI68347.1| KH domain-containing, RNA-binding, signal transduction-associated protein 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380028170|ref|XP_003697781.1| PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 3-like isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|350398608|ref|XP_003485248.1| PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 2-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|282158097|ref|NP_001164092.1| quaking related [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328780564|ref|XP_392246.3| PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 3-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|383850550|ref|XP_003700858.1| PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 3-like isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|340709880|ref|XP_003393528.1| PREDICTED: KH domain-containing, RNA-binding, signal transduction-associated protein 2-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query402
FB|FBgn0022987428 qkr54B "quaking related 54B" [ 0.427 0.401 0.557 3.7e-50
FB|FBgn0022986396 qkr58E-1 "quaking related 58E- 0.427 0.434 0.526 2.3e-48
MGI|MGI:2159649349 Khdrbs2 "KH domain containing, 0.427 0.492 0.514 6.8e-47
MGI|MGI:1313312346 Khdrbs3 "KH domain containing, 0.425 0.494 0.508 6.8e-47
UNIPROTKB|E1BVW8348 KHDRBS2 "Uncharacterized prote 0.427 0.494 0.52 1.4e-46
RGD|621738349 Khdrbs2 "KH domain containing, 0.427 0.492 0.508 2.9e-46
UNIPROTKB|Q5VWX1349 KHDRBS2 "KH domain-containing, 0.427 0.492 0.514 1.2e-45
UNIPROTKB|E2QWN2349 KHDRBS2 "Uncharacterized prote 0.427 0.492 0.514 1.6e-45
UNIPROTKB|E1BP48348 KHDRBS2 "Uncharacterized prote 0.427 0.494 0.502 1.6e-45
UNIPROTKB|E2RLG8346 KHDRBS3 "Uncharacterized prote 0.425 0.494 0.508 4.1e-45
FB|FBgn0022987 qkr54B "quaking related 54B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 485 (175.8 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 97/174 (55%), Positives = 121/174 (69%)

Query:    14 KANEYVKTLLKEKMTLDSDSHSYTLKLLDDEINKAMASNK-KKYDSPYLDLFREXXXXXX 72
             KANEY++  + E+  +D        KLL+ EI K   + +    +  Y D++RE      
Sbjct:    64 KANEYIRDCMAERNRMDR-KFPIAEKLLEGEIEKVQTTGRIPSREQKYADIYREKPLRIS 122

Query:    73 XXXXXXXXEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGD 132
                     EHP+FNFVGKLLGPKGNSLRRLQEET+ KM++LG+ SMRDR KEEELR   D
Sbjct:   123 QRVLVPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVLGRNSMRDRVKEEELRSSKD 182

Query:   133 PKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREM 186
             PK AHL  DLHV++S +APPAEA+ARIAYA++ELRKY+IPD ND IRQEQ RE+
Sbjct:   183 PKYAHLNSDLHVEISTIAPPAEAYARIAYAMAELRKYLIPDSNDIIRQEQLREL 236
GO:0003723 "RNA binding" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0003729 "mRNA binding" evidence=NAS
FB|FBgn0022986 qkr58E-1 "quaking related 58E-1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:2159649 Khdrbs2 "KH domain containing, RNA binding, signal transduction associated 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:1313312 Khdrbs3 "KH domain containing, RNA binding, signal transduction associated 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BVW8 KHDRBS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|621738 Khdrbs2 "KH domain containing, RNA binding, signal transduction associated 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5VWX1 KHDRBS2 "KH domain-containing, RNA-binding, signal transduction-associated protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWN2 KHDRBS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BP48 KHDRBS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RLG8 KHDRBS3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O75525KHDR3_HUMANNo assigned EC number0.41500.69650.8092yesN/A
Q9R226KHDR3_MOUSENo assigned EC number0.41360.69400.8063yesN/A
Q9JLP1KHDR3_RATNo assigned EC number0.40710.69400.8063yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
cd02395120 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K ho 4e-49
COG5176269 COG5176, MSL5, Splicing factor (branch point bindi 2e-08
smart0032268 smart00322, KH, K homology RNA-binding domain 2e-07
cd0010564 cd00105, KH-I, K homology RNA-binding domain, type 8e-07
pfam0001359 pfam00013, KH_1, KH domain 0.002
pfam1301442 pfam13014, KH_3, KH domain 0.002
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.002
PRK14965576 PRK14965, PRK14965, DNA polymerase III subunits ga 0.002
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
>gnl|CDD|239088 cd02395, SF1_like-KH, Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information 
 Score =  162 bits (411), Expect = 4e-49
 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 3/113 (2%)

Query: 74  KVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDP 133
           KV +PVK++P++NFVG +LGP+GN+L++L++ET  K+SI GKGSM+D  KEEELR    P
Sbjct: 3   KVYIPVKQYPKYNFVGLILGPRGNTLKQLEKETGAKISIRGKGSMKDGKKEEELRG---P 59

Query: 134 KNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIPDVNDEIRQEQFREM 186
           K AHL E LHV ++A  PP EA A+   A+ EL K  I   NDE+++EQ RE+
Sbjct: 60  KYAHLNEPLHVLITAETPPEEALAKAVEAIEELLKPAIEGGNDELKREQLREL 112

Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 120
>gnl|CDD|227503 COG5176, MSL5, Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|197652 smart00322, KH, K homology RNA-binding domain Back     alignment and domain information
>gnl|CDD|238053 cd00105, KH-I, K homology RNA-binding domain, type I Back     alignment and domain information
>gnl|CDD|215657 pfam00013, KH_1, KH domain Back     alignment and domain information
>gnl|CDD|221895 pfam13014, KH_3, KH domain Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 402
KOG1588|consensus259 100.0
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 100.0
KOG0119|consensus554 100.0
COG5176269 MSL5 Splicing factor (branch point binding protein 99.94
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 98.26
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 98.2
smart0032269 KH K homology RNA-binding domain. 98.18
PF1301443 KH_3: KH domain 98.05
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 97.91
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 97.9
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 97.82
KOG1960|consensus531 97.21
PRK13763180 putative RNA-processing protein; Provisional 97.01
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 96.96
KOG1676|consensus 600 96.81
PRK13763180 putative RNA-processing protein; Provisional 96.48
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 96.21
KOG1676|consensus600 96.04
KOG2193|consensus584 96.0
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 95.79
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 95.64
COG1094194 Predicted RNA-binding protein (contains KH domains 95.49
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 95.17
KOG2190|consensus485 94.31
PRK12704520 phosphodiesterase; Provisional 94.28
KOG2814|consensus345 93.87
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 93.02
KOG2874|consensus356 92.86
KOG2191|consensus402 92.74
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 92.13
KOG2191|consensus402 91.16
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 90.79
PRK00106535 hypothetical protein; Provisional 90.47
KOG2193|consensus584 87.34
KOG2190|consensus485 84.49
cd0213461 NusA_KH NusA_K homology RNA-binding domain (KH). N 84.32
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 82.88
KOG0336|consensus 629 81.66
>KOG1588|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-59  Score=448.10  Aligned_cols=187  Identities=47%  Similarity=0.757  Sum_probs=172.3

Q ss_pred             ccCCcchHHHHHHHHHHHHhhCCCCC--hHHHHHHHHHHHHhhhhcCCC-----CCCCCccccccCCCceEEEEEEccCC
Q psy12968          8 EDGNDTKANEYVKTLLKEKMTLDSDS--HSYTLKLLDDEINKAMASNKK-----KYDSPYLDLFREKPILVKVKVLVPVK   80 (402)
Q Consensus         8 ~~~~~~~~~~YL~ELl~Ek~~L~~~~--F~ha~rLLd~EI~RV~~~~~p-----~~~~~y~D~~~ekpvkl~eKI~IPvk   80 (402)
                      ..+.++..++||.+|++|+++|+ ..  |.||.+||++||.||+..+..     .....+.|++.++++|+++||+|||+
T Consensus        23 ~~~~~~~~~~yl~el~~e~~~l~-~~~~~~~~~rLL~~Ei~rv~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~Kv~vPv~  101 (259)
T KOG1588|consen   23 QPQLNEKASKYLSELLAERKSLS-PFFPFPHAERLLDEEIERVQTSGRQHGSKEPEELPYADVYSGKPVKLTEKVLVPVK  101 (259)
T ss_pred             ccchhhHHHHHHHHHHhhHHhcC-cccchHHHHHHHHHHHHHHHhhhhhccCCCchhcccccCccCCceeEEEEEEeccC
Confidence            44667889999999999999999 44  559999999999999998762     33344568899999999999999999


Q ss_pred             CCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEecCChhHHHHHHH
Q psy12968         81 EHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSALAPPAEAHARIA  160 (402)
Q Consensus        81 eyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~~~~~~A~~rLa  160 (402)
                      +||+||||||||||||||+||||++|||||+|||||||||..||++||+  ||+|+||++||||+|++++++++|+.||+
T Consensus       102 ~yP~fNFVGRILGPrGnSlkrLe~eTgCki~IrGrgSmrD~~KEE~lR~--~p~yeHL~epLHVlIe~~~p~~ea~~rl~  179 (259)
T KOG1588|consen  102 EYPKFNFVGRILGPRGNSLKRLEEETGCKIMIRGRGSMRDKAKEEELRG--DPGYEHLNEPLHVLIETEAPPAEAYARLA  179 (259)
T ss_pred             CCCCCccccccccCCcchHHHHHHHHCCeEEEecCCcccchHHHHHhhc--CcchHHhCCCcEEEEEEeCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999996  99999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCccHHHHHHHHHHHHhhcCCCCCCC
Q psy12968        161 YALSELRKYIIPDVNDEIRQEQFREMGYVHHEPRPQM  197 (402)
Q Consensus       161 ~AveeIeklL~Pd~~DelKq~QLrELA~iNg~~~P~~  197 (402)
                      +|+++|++||+|+.+|+.|++||||||++||++....
T Consensus       180 ~AleeI~klL~P~~e~~dk~~QL~ELa~lngt~~~~~  216 (259)
T KOG1588|consen  180 YALEEIKKLLVPDHEDEDKREQLRELAILNGTYLRSE  216 (259)
T ss_pred             HHHHHHHHhcCCCCCCchHHHHHHHHhhcCCcccccc
Confidence            9999999999999888889999999999999865533

>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG0119|consensus Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>KOG1960|consensus Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>KOG1676|consensus Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>KOG1676|consensus Back     alignment and domain information
>KOG2193|consensus Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>KOG2190|consensus Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>KOG2814|consensus Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>KOG2874|consensus Back     alignment and domain information
>KOG2191|consensus Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>KOG2191|consensus Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG2193|consensus Back     alignment and domain information
>KOG2190|consensus Back     alignment and domain information
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH) Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0336|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
2bl5_A140 Solution Structure Of The Kh-Qua2 Region Of The Xen 3e-16
1k1g_A131 Structural Basis For Recognition Of The Intron Bran 1e-06
>pdb|2BL5|A Chain A, Solution Structure Of The Kh-Qua2 Region Of The Xenopus Star-Gsg Quaking Protein Length = 140 Back     alignment and structure 
Iteration: 1

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 70/111 (63%), Gaps = 4/111 (3%)
Query: 81  EHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVE 140
           E+P FNFVG++LGP+G + ++L+ ET  K+ + GKGSMRD+ KEE+ R  G P   HL E
Sbjct: 12  EYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR--GKPNWEHLNE 69
Query: 141 DLHVQVSALAPPAEAHARIAYALSELRKYIIP--DVNDEIRQEQFREMGYV 189
           DLHV ++       A  ++  A+ E++K ++P  +  D +++ +  E+  +
Sbjct: 70  DLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAIL 120
>pdb|1K1G|A Chain A, Structural Basis For Recognition Of The Intron Branch Site Rna By Splicing Factor 1 Length = 131 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query402
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 9e-38
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 2e-34
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 7e-13
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 2e-04
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 2e-04
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 2e-04
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 8e-04
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 3e-04
1x4m_A94 FAR upstream element binding protein 1; KH domain, 3e-04
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 5e-04
2dgr_A83 Ring finger and KH domain-containing protein 1; st 6e-04
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 7e-04
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Length = 140 Back     alignment and structure
 Score =  132 bits (333), Expect = 9e-38
 Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 4/118 (3%)

Query: 71  VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
           ++ K+ VPVKE+P FNFVG++LGP+G + ++L+ ET  K+ + GKGSMRD+ KEE+ R  
Sbjct: 2   LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR-- 59

Query: 131 GDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYII--PDVNDEIRQEQFREM 186
           G P   HL EDLHV ++       A  ++  A+ E++K ++   +  D +++ +  E+
Sbjct: 60  GKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMEL 117
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 131 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Length = 71 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164 Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 100.0
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 100.0
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 99.92
2xa6_A41 KH domain-containing\,RNA-binding\,signal transduc 98.9
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 98.63
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 98.55
3k6t_A60 Female germline-specific tumor suppressor GLD-1; Q 98.55
4dnn_A56 Protein quaking, MQKI, QKI; helix-turn-helix, hydr 98.45
1x4m_A94 FAR upstream element binding protein 1; KH domain, 98.39
1we8_A104 Tudor and KH domain containing protein; structural 98.32
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 98.31
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 98.29
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 98.28
1x4n_A92 FAR upstream element binding protein 1; KH domain, 98.27
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 98.27
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 98.24
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 98.23
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 98.23
2dgr_A83 Ring finger and KH domain-containing protein 1; st 98.19
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 98.11
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 98.11
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 98.0
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 97.92
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 97.91
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 97.91
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 97.87
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 97.79
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 97.73
1j4w_A174 FUSE binding protein; single-stranded DNA binding 97.63
1j4w_A174 FUSE binding protein; single-stranded DNA binding 97.58
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 97.46
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 97.45
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 97.45
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 97.4
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 97.36
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 97.29
1tua_A191 Hypothetical protein APE0754; structural genomics, 97.06
2cpq_A91 FragIle X mental retardation syndrome related prot 96.81
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 96.72
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 96.65
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 95.3
3n89_A376 Defective in GERM LINE development protein 3, ISO; 94.13
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 93.84
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 92.93
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 91.62
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 90.8
1tua_A191 Hypothetical protein APE0754; structural genomics, 88.91
3v69_A140 Protein filia; RNA-binding, embryogenesis, KH doma 86.55
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
Probab=100.00  E-value=3.8e-45  Score=322.04  Aligned_cols=125  Identities=38%  Similarity=0.671  Sum_probs=119.4

Q ss_pred             eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968         70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL  149 (402)
Q Consensus        70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~  149 (402)
                      ++++|||||+++||+|||||+||||||+|+|+||++|||||.||||||+||+++|+.++  |+|+|+|++|||||+|+++
T Consensus         1 ~~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~--g~~~~~~~~epLHV~Isa~   78 (140)
T 2bl5_A            1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR--GKPNWEHLNEDLHVLITVE   78 (140)
T ss_dssp             CEEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTST--TSHHHHTTTSCCEEEEEEC
T ss_pred             CceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCccccccccccc--CCCCccccCCCcEEEEEec
Confidence            37899999999999999999999999999999999999999999999999999998765  6899999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHHhhcCCCCCC
Q psy12968        150 APPAEAHARIAYALSELRKYIIP--DVNDEIRQEQFREMGYVHHEPRPQ  196 (402)
Q Consensus       150 ~~~~~A~~rLa~AveeIeklL~P--d~~DelKq~QLrELA~iNg~~~P~  196 (402)
                      +++++|+++|++|+++|++||+|  +++|++|++||+|||++||++++.
T Consensus        79 ~~~~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~  127 (140)
T 2bl5_A           79 DAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDA  127 (140)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGG
T ss_pred             CchhhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCC
Confidence            99999999999999999999987  679999999999999999999983
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens} Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A Back     alignment and structure
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus} Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 402
d2bl5a1134 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {Afric 2e-43
d1k1ga_122 d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo s 3e-37
d1dtja_74 d.51.1.1 (A:) Neuro-oncological ventral antigen 2, 7e-07
d1x4na179 d.51.1.1 (A:8-86) Far upstream binding element, FB 2e-05
d1x4ma181 d.51.1.1 (A:8-88) Far upstream binding element, FB 2e-04
d1viga_71 d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId 3e-04
d2ctla184 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T 4e-04
d2ctea181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 7e-04
d1zzka175 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie 0.002
d1j4wa174 d.51.1.1 (A:1-74) Far upstream binding element, FB 0.002
d1wvna170 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma 0.002
d2ctka191 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T 0.003
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 134 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  146 bits (369), Expect = 2e-43
 Identities = 47/121 (38%), Positives = 78/121 (64%), Gaps = 4/121 (3%)

Query: 71  VKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKE 130
           ++ K+ VPVKE+P FNFVG++LGP+G + ++L+ ET  K+ + GKGSMRD+ KEE+ R  
Sbjct: 2   LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR-- 59

Query: 131 GDPKNAHLVEDLHVQVSALAPPAEAHARIAYALSELRKYIIP--DVNDEIRQEQFREMGY 188
           G P   HL EDLHV ++       A  ++  A+ E++K ++P  +  D +++ +  E+  
Sbjct: 60  GKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAI 119

Query: 189 V 189
           +
Sbjct: 120 L 120
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query402
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 100.0
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 100.0
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 98.44
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 98.41
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 98.32
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 98.31
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 98.29
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 98.24
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 98.23
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 98.12
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.09
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.09
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 98.02
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 98.02
d2cpqa178 Fragile X mental retardation syndrome related prot 97.98
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 97.9
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.89
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 97.88
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.75
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 97.73
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 97.72
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 97.6
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 97.43
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.34
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 97.32
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Quaking protein A (Xqua)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=100.00  E-value=8.4e-47  Score=328.66  Aligned_cols=125  Identities=38%  Similarity=0.671  Sum_probs=118.9

Q ss_pred             eEEEEEEccCCCCCCCceeeEEeCCCchhHHHHHHhhCceEEEecCCCCCCChhhHhhhccCCCCCCCCCCCcEEEEEec
Q psy12968         70 LVKVKVLVPVKEHPRFNFVGKLLGPKGNSLRRLQEETMTKMSILGKGSMRDRSKEEELRKEGDPKNAHLVEDLHVQVSAL  149 (402)
Q Consensus        70 kl~eKI~IPvkeyP~fNFVGrILGPRGnTlKrLE~ETGcKI~IRGKGS~kd~kkEe~LR~sgdP~~ehlnEpLHVlIsA~  149 (402)
                      |+++|||||+++||+|||||+||||||+|+|+||+||||||+||||||+|++++++.++  ++++|+|++|||||+|+++
T Consensus         1 kl~eKv~IP~~~~P~~NfvG~IiGPrG~t~K~le~eTg~kI~IrGrGS~k~~~~~~~~~--~~~~~~~~~epLHv~I~a~   78 (134)
T d2bl5a1           1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNR--GKPNWEHLNEDLHVLITVE   78 (134)
T ss_dssp             CEEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTST--TSHHHHTTTSCCEEEEEEC
T ss_pred             CcceEEeCCCCCCCCCCeeEEEECCCCchHHHHHHHHCCEEEEEecCCCcCcccccccc--CCCCCcCCCCCCEEEEEec
Confidence            68999999999999999999999999999999999999999999999999999998876  5788999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHhhcCC--CccHHHHHHHHHHHHhhcCCCCCC
Q psy12968        150 APPAEAHARIAYALSELRKYIIP--DVNDEIRQEQFREMGYVHHEPRPQ  196 (402)
Q Consensus       150 ~~~~~A~~rLa~AveeIeklL~P--d~~DelKq~QLrELA~iNg~~~P~  196 (402)
                      +++.+|+.+|++|+++|+++|+|  +++|++|++||+|||.|||+++..
T Consensus        79 ~~~~~a~~kl~~A~~~I~~lL~p~~e~~de~k~~QL~eLa~lNGt~r~~  127 (134)
T d2bl5a1          79 DAQNRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDA  127 (134)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGG
T ss_pred             CcHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhcCccccc
Confidence            99999999999999999999987  678999999999999999998763
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure