Psyllid ID: psy13014
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | 2.2.26 [Sep-21-2011] | |||||||
| Q3ZBR5 | 292 | Tetratricopeptide repeat | yes | N/A | 0.480 | 0.376 | 0.448 | 3e-20 | |
| Q99614 | 292 | Tetratricopeptide repeat | yes | N/A | 0.484 | 0.380 | 0.427 | 6e-20 | |
| Q91Z38 | 292 | Tetratricopeptide repeat | yes | N/A | 0.532 | 0.417 | 0.403 | 2e-19 | |
| O70593 | 314 | Small glutamine-rich tetr | no | N/A | 0.502 | 0.366 | 0.346 | 2e-11 | |
| Q8BJU0 | 315 | Small glutamine-rich tetr | no | N/A | 0.502 | 0.365 | 0.346 | 2e-11 | |
| Q9CZW5 | 611 | Mitochondrial import rece | no | N/A | 0.545 | 0.204 | 0.338 | 5e-11 | |
| O94826 | 608 | Mitochondrial import rece | no | N/A | 0.506 | 0.190 | 0.330 | 8e-11 | |
| Q8VD33 | 304 | Small glutamine-rich tetr | no | N/A | 0.537 | 0.404 | 0.340 | 1e-10 | |
| Q80W98 | 304 | Small glutamine-rich tetr | no | N/A | 0.537 | 0.404 | 0.340 | 1e-10 | |
| Q96EQ0 | 304 | Small glutamine-rich tetr | no | N/A | 0.537 | 0.404 | 0.340 | 1e-10 |
| >sp|Q3ZBR5|TTC1_BOVIN Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 98.6 bits (244), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 6/116 (5%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
LK+EGN F+ + E+ + Y AL++CP R+V ++NR+AA + EK +
Sbjct: 119 LKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAAA------RMKQEKKE 172
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
+I CSKAI LNPSY++ RRA LY+++DKLDEAL DY+ ILE DP+ A A
Sbjct: 173 MAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREA 228
|
Bos taurus (taxid: 9913) |
| >sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 73/117 (62%), Gaps = 6/117 (5%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
QK + + LK+EGN F+ + E+ + Y+ AL CP R++ ++NR+AA
Sbjct: 110 QKRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAA----- 164
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
+ +K + +I CSKAI LNPSY++ RRA LY+++DKLDEAL DY+ ILE DP
Sbjct: 165 -RMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDP 220
|
Homo sapiens (taxid: 9606) |
| >sp|Q91Z38|TTC1_MOUSE Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
LK+EGN F+ + E+ + Y++AL+ CP R+V ++NR+AA + +K +
Sbjct: 119 LKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAA------RMKQDKKE 172
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
+I CSKAI LNP+Y++ RRA LY+++DKLDEAL DY+ +LE DP+ A A
Sbjct: 173 TAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRL 232
Query: 191 PDLKLKEKN 199
P +++E+N
Sbjct: 233 PK-QIEERN 240
|
Mus musculus (taxid: 10090) |
| >sp|O70593|SGTA_RAT Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Rattus norvegicus GN=Sgta PE=1 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
LK EGN +L + ++ Y +A+ P + AV++ NR+AA KL +Y+
Sbjct: 94 LKTEGNEQMKLENFEAAVHLYGKAIELNP-----ANAVYFCNRAAAYSKLGNYVG----- 143
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
++ C +AI ++P Y K Y R +K EA+A Y+K LELDP+N D Y +
Sbjct: 144 -AVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDN-DTYKSNLKI 201
Query: 191 PDLKLKE 197
+LKL+E
Sbjct: 202 AELKLRE 208
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q8BJU0|SGTA_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein alpha OS=Mus musculus GN=Sgta PE=1 SV=2 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
LK EGN +L + ++ Y +A+ P + AV++ NR+AA KL +Y+
Sbjct: 95 LKTEGNEQMKLENFEAAVHLYGKAIELNP-----ANAVYFCNRAAAYSKLGNYVG----- 144
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
++ C +AI ++P Y K Y R +K EA+A Y+K LELDP+N D Y +
Sbjct: 145 -AVQDCERAIGIDPGYSKAYGRMGLALSSLNKHAEAVAYYKKALELDPDN-DTYKSNLKI 202
Query: 191 PDLKLKE 197
+LKL+E
Sbjct: 203 AELKLRE 209
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Mus musculus (taxid: 10090) |
| >sp|Q9CZW5|TOM70_MOUSE Mitochondrial import receptor subunit TOM70 OS=Mus musculus GN=Tomm70a PE=1 SV=2 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 11/136 (8%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A + K++GN F+ ++ +++ Y EA+ CP +V + FY NR+AA E+L + +
Sbjct: 117 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNVDLSTFYQNRAAAFEQLQKWKEVA 176
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK--ILELDPNNRDAYV 185
+ C+KA+ LNP Y+K RRA+ +++ D E L D ILE N + +
Sbjct: 177 QD------CTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLL 230
Query: 186 ATKVSPDLKLKEKNGA 201
A KV LKL K A
Sbjct: 231 ADKV---LKLLGKENA 243
|
Receptor that accelerates the import of all mitochondrial precursor proteins. Mus musculus (taxid: 10090) |
| >sp|O94826|TOM70_HUMAN Mitochondrial import receptor subunit TOM70 OS=Homo sapiens GN=TOMM70A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A + K++GN F+ ++ +++ Y EA+ CP +V + FY NR+AA E+L + +
Sbjct: 114 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNVDLSTFYQNRAAAFEQLQKWKEVA 173
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK--ILELDPNNRDAYV 185
+ C+KA+ LNP Y+K RRA+ +++ D E L D ILE N + +
Sbjct: 174 QD------CTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQQSMLL 227
Query: 186 ATKV 189
A KV
Sbjct: 228 ADKV 231
|
Receptor that accelerates the import of all mitochondrial precursor proteins. Homo sapiens (taxid: 9606) |
| >sp|Q8VD33|SGTB_MOUSE Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Mus musculus GN=Sgtb PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A LKDEGN + ++ ++ Y +A+ P + AV+Y NR+AA KL+ Y
Sbjct: 85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN-----AVYYCNRAAAQSKLSHYT--- 136
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187
+I C KAI ++ Y K Y R +K +EA+ YQK L+LDP N D+Y +
Sbjct: 137 ---DAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN-DSYKSN 192
Query: 188 KVSPDLKLKEKNGAT 202
+ KL+E + T
Sbjct: 193 LKIAEQKLREVSSPT 207
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Mus musculus (taxid: 10090) |
| >sp|Q80W98|SGTB_RAT Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Rattus norvegicus GN=Sgtb PE=1 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 12/135 (8%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A LKDEGN + ++ ++ Y +A+ P + AV+Y NR+AA KL+ Y
Sbjct: 85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN-----AVYYCNRAAAQSKLSHYT--- 136
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187
+I C KAI ++ Y K Y R +K +EA+ YQK L+LDP N D+Y +
Sbjct: 137 ---DAIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN-DSYKSN 192
Query: 188 KVSPDLKLKEKNGAT 202
+ KL+E + T
Sbjct: 193 LKIAEQKLREVSSPT 207
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q96EQ0|SGTB_HUMAN Small glutamine-rich tetratricopeptide repeat-containing protein beta OS=Homo sapiens GN=SGTB PE=1 SV=1 | Back alignment and function description |
|---|
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 12/135 (8%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A LKDEGN + ++ ++ Y +A+ P + AV+Y NR+AA KL Y
Sbjct: 85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN-----AVYYCNRAAAQSKLGHYT--- 136
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187
+I C KAI ++ Y K Y R +K +EA+ YQK L+LDP N D+Y +
Sbjct: 137 ---DAIKDCEKAIAIDSKYSKAYGRMGLALTALNKFEEAVTSYQKALDLDPEN-DSYKSN 192
Query: 188 KVSPDLKLKEKNGAT 202
+ KL+E + T
Sbjct: 193 LKIAEQKLREVSSPT 207
|
Co-chaperone that binds directly to HSC70 and HSP70 and regulates their ATPase activity. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | ||||||
| 91093300 | 249 | PREDICTED: similar to tetratricopeptide | 0.668 | 0.614 | 0.417 | 3e-25 | |
| 226484756 | 245 | Tetratricopeptide repeat protein 1 [Schi | 0.764 | 0.714 | 0.359 | 1e-24 | |
| 270014203 | 301 | hypothetical protein TcasGA2_TC016288 [T | 0.572 | 0.435 | 0.463 | 1e-24 | |
| 226468606 | 245 | Tetratricopeptide repeat protein 1 [Schi | 0.764 | 0.714 | 0.354 | 2e-24 | |
| 56752635 | 245 | SJCHGC04914 protein [Schistosoma japonic | 0.764 | 0.714 | 0.354 | 2e-24 | |
| 242018913 | 254 | tetratricopeptide repeat protein, putati | 0.545 | 0.492 | 0.473 | 1e-23 | |
| 256084504 | 245 | tetratricopeptide protein [Schistosoma m | 0.655 | 0.612 | 0.392 | 2e-23 | |
| 348539104 | 337 | PREDICTED: tetratricopeptide repeat prot | 0.554 | 0.376 | 0.470 | 3e-23 | |
| 427781175 | 250 | Putative tetratricopeptide repeat protei | 0.554 | 0.508 | 0.447 | 1e-22 | |
| 357616490 | 279 | putative tetratricopeptide repeat domain | 0.572 | 0.469 | 0.442 | 2e-22 |
| >gi|91093300|ref|XP_967545.1| PREDICTED: similar to tetratricopeptide repeat domain 1 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 108/175 (61%), Gaps = 22/175 (12%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ AI LK++GN F+ ++ ES+ Y+EALR CP S RA+ YANR+A S ++
Sbjct: 73 EQAIVLKNKGNDEFKNCKYLESIGTYSEALRLCPLKYSSDRAILYANRAA------SKIN 126
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+E+ +I C+KAITLN Y++ Y RRA+LY+++DKLDE+L D++KILELDP N++A
Sbjct: 127 VERKASAIDDCTKAITLNDKYVRAYLRRAKLYEETDKLDESLEDFKKILELDPGNKEALS 186
Query: 186 ATKVSPDLKLKEKN--------GATKLSPDVFLHP-----GQPQIQHNPETIHGG 227
AT P L ++E+N G K ++FL P ++Q +P T GG
Sbjct: 187 ATHRLPSL-IEERNEKLKTEMLGKLKDLGNMFLRPFGLSTNNFKLQQDPNT--GG 238
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|226484756|emb|CAX74287.1| Tetratricopeptide repeat protein 1 [Schistosoma japonicum] | Back alignment and taxonomy information |
|---|
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 110/203 (54%), Gaps = 28/203 (13%)
Query: 33 EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92
E TD E + +Q I +K A+S+KDEGN LF+ +SE+L KY
Sbjct: 43 EKSTDDKILEEESLTVQEI----------EKRRDDAVSIKDEGNLLFKSGSFSEALVKYT 92
Query: 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR 152
EAL CP C V R+V YANR+A ++ L+ P+ +IL C++++ L P Y++ +R
Sbjct: 93 EALDLCPLKCGVERSVIYANRAAC------HIKLDSPEAAILDCNESLNLQPDYMRCLER 146
Query: 153 RARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDL------KLKEKN-GATKLS 205
RA L + D+L +AL DY+KIL+ DP+N+ A A P+ K+KE+ G K
Sbjct: 147 RATLLESKDRLSDALEDYKKILQFDPSNQKARYACATLPERIRIQNEKMKEEMLGQLKQL 206
Query: 206 PDVFLHP-----GQPQIQHNPET 223
++ L P ++Q NPE+
Sbjct: 207 GNLILKPFGLSTDNFKVQKNPES 229
|
Source: Schistosoma japonicum Species: Schistosoma japonicum Genus: Schistosoma Family: Schistosomatidae Order: Strigeidida Class: Trematoda Phylum: Platyhelminthes Superkingdom: Eukaryota |
| >gi|270014203|gb|EFA10651.1| hypothetical protein TcasGA2_TC016288 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 94/138 (68%), Gaps = 7/138 (5%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ AI LK++GN F+ ++ ES+ Y+EALR CP S RA+ YANR+A S ++
Sbjct: 73 EQAIVLKNKGNDEFKNCKYLESIGTYSEALRLCPLKYSSDRAILYANRAA------SKIN 126
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+E+ +I C+KAITLN Y++ Y RRA+LY+++DKLDE+L D++KILELDP N++A
Sbjct: 127 VERKASAIDDCTKAITLNDKYVRAYLRRAKLYEETDKLDESLEDFKKILELDPGNKEALS 186
Query: 186 ATKVSPDLKLKEKNGATK 203
AT P L ++E+N K
Sbjct: 187 ATHRLPSL-IEERNEKLK 203
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|226468606|emb|CAX69980.1| Tetratricopeptide repeat protein 1 [Schistosoma japonicum] | Back alignment and taxonomy information |
|---|
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 28/203 (13%)
Query: 33 EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92
E TD E + +Q I +K A+++KDEGN LF+ +SE+L KY
Sbjct: 43 EKSTDDKILEEESLTVQEI----------EKRRDDAVAIKDEGNLLFKSGSFSEALVKYT 92
Query: 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR 152
EAL CP C V R+V YANR+A ++ L+ P+ +IL C++++ L P Y++ +R
Sbjct: 93 EALDLCPLKCGVERSVIYANRAAC------HIKLDSPEAAILDCNESLNLQPDYMRCLER 146
Query: 153 RARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDL------KLKEKN-GATKLS 205
RA L + D+L +AL DY+KIL+ DP+N+ A A P+ K+KE+ G K
Sbjct: 147 RATLLESKDRLSDALEDYKKILQFDPSNQKARYACATLPERIRIQNEKMKEEMLGQLKQL 206
Query: 206 PDVFLHP-----GQPQIQHNPET 223
++ L P ++Q NPE+
Sbjct: 207 GNLILKPFGLSTDNFKVQKNPES 229
|
Source: Schistosoma japonicum Species: Schistosoma japonicum Genus: Schistosoma Family: Schistosomatidae Order: Strigeidida Class: Trematoda Phylum: Platyhelminthes Superkingdom: Eukaryota |
| >gi|56752635|gb|AAW24531.1| SJCHGC04914 protein [Schistosoma japonicum] | Back alignment and taxonomy information |
|---|
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 28/203 (13%)
Query: 33 EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92
E TD E + +Q I +K A+++KDEGN LF+ +SE+L KY
Sbjct: 43 EKSTDDKILEEESLTVQEI----------EKRRDDAVAIKDEGNLLFKSGSFSEALVKYT 92
Query: 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR 152
EAL CP C V R+V YANR+A ++ L+ P+ +IL C++++ L P Y++ +R
Sbjct: 93 EALDLCPLKCGVERSVIYANRAAC------HIKLDSPEAAILDCNESLNLQPDYMRCLER 146
Query: 153 RARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDL------KLKEKN-GATKLS 205
RA L + D+L +AL DY+KIL+ DP+N+ A A P+ K+KE+ G K
Sbjct: 147 RATLLESKDRLSDALEDYKKILQFDPSNQKARYACATLPERIRIQNEKMKEEMLGQLKQL 206
Query: 206 PDVFLHP-----GQPQIQHNPET 223
++ L P ++Q NPE+
Sbjct: 207 GNLILKPFGLSTDNFKVQKNPES 229
|
Source: Schistosoma japonicum Species: Schistosoma japonicum Genus: Schistosoma Family: Schistosomatidae Order: Strigeidida Class: Trematoda Phylum: Platyhelminthes Superkingdom: Eukaryota |
| >gi|242018913|ref|XP_002429913.1| tetratricopeptide repeat protein, putative [Pediculus humanus corporis] gi|212514959|gb|EEB17175.1| tetratricopeptide repeat protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 88/131 (67%), Gaps = 6/131 (4%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
Q+ ++ I +K+EGN LF+ ++ ++ KY++AL +CP RAV YANR+AA KL
Sbjct: 75 QERKELGIKIKEEGNTLFKNGEYESAIKKYSQALNTCPLEFVEERAVLYANRAAA--KLK 132
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+ L+ E +I CSKA+ LNP+Y+K Y RRA+LY++ DKLDEAL DY+KILE DP
Sbjct: 133 NGLNKE----AIDDCSKALELNPNYVKAYIRRAKLYEECDKLDEALEDYKKILEFDPGYS 188
Query: 182 DAYVATKVSPD 192
+A AT P+
Sbjct: 189 EAIAATMRLPE 199
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|256084504|ref|XP_002578468.1| tetratricopeptide protein [Schistosoma mansoni] gi|353229219|emb|CCD75390.1| putative tetratricopeptide protein [Schistosoma mansoni] | Back alignment and taxonomy information |
|---|
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 98/168 (58%), Gaps = 18/168 (10%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A++ KD+GNA F+ ++E+L KY EAL CP C V R+V YANR+A ++ L+
Sbjct: 68 AVATKDKGNAFFKSGSFNEALMKYTEALDLCPFKCGVERSVIYANRAAC------HIKLD 121
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187
P+ +IL C++++ L P Y+K +RRA L + D+L +AL DYQKIL LDP N+ A A
Sbjct: 122 SPEAAILDCNESLNLQPDYVKCLERRATLLESKDRLSDALEDYQKILRLDPGNQKARHAC 181
Query: 188 KVSPDL------KLKEKN-GATKLSPDVFLHP-----GQPQIQHNPET 223
P+ K+KE+ G K ++ L P ++Q NPE+
Sbjct: 182 ATLPERIRIQNEKMKEEMFGQLKQLGNLILKPFGLSTDNFKVQKNPES 229
|
Source: Schistosoma mansoni Species: Schistosoma mansoni Genus: Schistosoma Family: Schistosomatidae Order: Strigeidida Class: Trematoda Phylum: Platyhelminthes Superkingdom: Eukaryota |
| >gi|348539104|ref|XP_003457029.1| PREDICTED: tetratricopeptide repeat protein 1-like [Oreochromis niloticus] | Back alignment and taxonomy information |
|---|
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 86/134 (64%), Gaps = 7/134 (5%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
Q +ISLK+ GNA F+ W+E+ Y +AL CP S RAV ++NR+AA L
Sbjct: 158 QQSISLKEAGNAHFKRGDWAEAGRSYTDALSVCPVCFSRERAVLFSNRAAA------RLH 211
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
L+ +Q+I CS+AI L+P YL+ RRA LY+Q++KLDEAL DYQK+LE DPNN A
Sbjct: 212 LDLKEQAISDCSRAIALDPDYLRALLRRAELYEQTEKLDEALEDYQKVLERDPNNVAARQ 271
Query: 186 ATKVSPDLKLKEKN 199
A P +++E+N
Sbjct: 272 AAMRLPQ-QIQERN 284
|
Source: Oreochromis niloticus Species: Oreochromis niloticus Genus: Oreochromis Family: Cichlidae Order: Perciformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|427781175|gb|JAA56039.1| Putative tetratricopeptide repeat protein 1 [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 89/134 (66%), Gaps = 7/134 (5%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ A++LK +GN F+ Q+ +++ Y +AL+ CP S S R+V Y+NR A ++
Sbjct: 78 ECALNLKGDGNVSFKAGQYLDAMEAYTQALKICPLSSSEERSVLYSNRGA------TWAR 131
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
LEK +I C+KAI LNPSYLK +RA LY+++ LDEAL DYQ++LELDP+N +A
Sbjct: 132 LEKKKLAIKDCTKAIELNPSYLKPVLKRAWLYKETKNLDEALKDYQRVLELDPSNGEARH 191
Query: 186 ATKVSPDLKLKEKN 199
A + PD ++KE+N
Sbjct: 192 ACMMLPD-EIKERN 204
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357616490|gb|EHJ70221.1| putative tetratricopeptide repeat domain 1 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 91/140 (65%), Gaps = 9/140 (6%)
Query: 62 QKLEQTAIS--LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
+K E+ I+ LK GN F++ + S+ KY EALR CP + RA+ Y NRSA
Sbjct: 101 EKAERQVIAEELKRAGNEAFKVGDFDRSIEKYTEALRICPLQYTTQRAILYCNRSA---- 156
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
S + LE+ Q+I C++A+ L+ +YLK Y RRA+ Y+ +DKLDE LADY+KILELDP+
Sbjct: 157 --SKMKLERYKQAIKDCTRAVELDDTYLKAYYRRAQSYEATDKLDECLADYKKILELDPS 214
Query: 180 NRDAYVATKVSPDLKLKEKN 199
+++A+ A P L ++E+N
Sbjct: 215 HKEAHAAIIRLPPL-IEERN 233
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | ||||||
| RGD|1359604 | 292 | Ttc1 "tetratricopeptide repeat | 0.589 | 0.462 | 0.401 | 4.3e-22 | |
| MGI|MGI:1914077 | 292 | Ttc1 "tetratricopeptide repeat | 0.589 | 0.462 | 0.394 | 5.5e-22 | |
| UNIPROTKB|Q99614 | 292 | TTC1 "Tetratricopeptide repeat | 0.589 | 0.462 | 0.401 | 1.1e-21 | |
| UNIPROTKB|Q3ZBR5 | 292 | TTC1 "Tetratricopeptide repeat | 0.550 | 0.431 | 0.428 | 1.5e-21 | |
| UNIPROTKB|F1RR38 | 292 | TTC1 "Uncharacterized protein" | 0.550 | 0.431 | 0.398 | 2.7e-20 | |
| ZFIN|ZDB-GENE-041114-80 | 330 | ttc1 "tetratricopeptide repeat | 0.563 | 0.390 | 0.397 | 9.2e-20 | |
| UNIPROTKB|E1BWM0 | 296 | TTC1 "Uncharacterized protein" | 0.589 | 0.456 | 0.366 | 3.1e-19 | |
| UNIPROTKB|B6GVA2 | 261 | int106 "Tetratricopeptide repe | 0.506 | 0.444 | 0.373 | 1.3e-15 | |
| TAIR|locus:2118776 | 277 | TPR1 "tetratricopeptide repeat | 0.502 | 0.415 | 0.368 | 4.9e-14 | |
| MGI|MGI:2444615 | 304 | Sgtb "small glutamine-rich tet | 0.537 | 0.404 | 0.340 | 4.2e-13 |
| RGD|1359604 Ttc1 "tetratricopeptide repeat domain 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
Identities = 57/142 (40%), Positives = 86/142 (60%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
QK + + LK+EGN F+ + E+ + Y++AL+ CP R+V ++NR+AA K
Sbjct: 110 QKRREESAKLKEEGNEQFKRGDYVEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQ- 168
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+K + +I CSKAI LNP+Y++ RRA LY+++DKLDEAL DY+ ILE DP+
Sbjct: 169 -----DKKEMAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSILETDPSVH 223
Query: 182 DAYVATKVSPDLKLKEKNGATK 203
A A P +++E+N K
Sbjct: 224 QAREACVRLPK-QIEERNERLK 244
|
|
| MGI|MGI:1914077 Ttc1 "tetratricopeptide repeat domain 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 56/142 (39%), Positives = 86/142 (60%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
QK + + LK+EGN F+ + E+ + Y++AL+ CP R+V ++NR+AA K
Sbjct: 110 QKRREESAKLKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQ- 168
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+K + +I CSKAI LNP+Y++ RRA LY+++DKLDEAL DY+ +LE DP+
Sbjct: 169 -----DKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVH 223
Query: 182 DAYVATKVSPDLKLKEKNGATK 203
A A P +++E+N K
Sbjct: 224 QAREACMRLPK-QIEERNERLK 244
|
|
| UNIPROTKB|Q99614 TTC1 "Tetratricopeptide repeat protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 57/142 (40%), Positives = 84/142 (59%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
QK + + LK+EGN F+ + E+ + Y+ AL CP R++ ++NR+AA K
Sbjct: 110 QKRREESTRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQ- 168
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+K + +I CSKAI LNPSY++ RRA LY+++DKLDEAL DY+ ILE DP+
Sbjct: 169 -----DKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIH 223
Query: 182 DAYVATKVSPDLKLKEKNGATK 203
A A P +++E+N K
Sbjct: 224 QAREACMRLPK-QIEERNERLK 244
|
|
| UNIPROTKB|Q3ZBR5 TTC1 "Tetratricopeptide repeat protein 1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 57/133 (42%), Positives = 81/133 (60%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
LK+EGN F+ + E+ + Y AL++CP R+V ++NR+AA K EK +
Sbjct: 119 LKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAAARMKQ------EKKE 172
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
+I CSKAI LNPSY++ RRA LY+++DKLDEAL DY+ ILE DP+ A A
Sbjct: 173 MAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRL 232
Query: 191 PDLKLKEKNGATK 203
P +++E+N K
Sbjct: 233 PK-QIEERNERLK 244
|
|
| UNIPROTKB|F1RR38 TTC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 53/133 (39%), Positives = 80/133 (60%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
LK+EGN F+ + E+ + Y AL+ CP R++ ++NR+AA K +K +
Sbjct: 119 LKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSNRAAARMKQ------DKKE 172
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
+I CSKAI LNP+Y++ RRA LY+++DKLDEAL DY+ ILE DP+ A A
Sbjct: 173 MAISDCSKAIQLNPNYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRL 232
Query: 191 PDLKLKEKNGATK 203
P +++++N K
Sbjct: 233 PK-QIEDRNERLK 244
|
|
| ZFIN|ZDB-GENE-041114-80 ttc1 "tetratricopeptide repeat domain 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 54/136 (39%), Positives = 83/136 (61%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
++ LK++GNA F+ + E+ Y+ AL+ CP + R++ ++NR+A S L +
Sbjct: 153 SLELKEKGNAQFKSGEHVEAEESYSAALKLCPVCFTKDRSILFSNRAA------SRLHQD 206
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187
K D +I CSKAI LNP+Y++ RRA LY+++DKLDEAL DY+ +LE DP A A
Sbjct: 207 KKDGAISDCSKAIELNPNYVRAILRRAELYEKTDKLDEALEDYKTVLEKDPGIPAAREAC 266
Query: 188 KVSPDLKLKEKNGATK 203
P +++E+N K
Sbjct: 267 MRLPR-QIEERNEKMK 281
|
|
| UNIPROTKB|E1BWM0 TTC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 52/142 (36%), Positives = 85/142 (59%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
QK + + +LK++GN F+ + E+ Y +AL+ CP RAV ++NR+AA K
Sbjct: 114 QKRRKESTTLKEKGNEQFKKGDYGEAEDSYTKALQICPACFQKDRAVLFSNRAAAKMKQ- 172
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+K + ++ CSKA+ L+P+Y++ RRA L+++++KLDEAL DY+ ILE DP+
Sbjct: 173 -----DKTEAALNDCSKAVELDPNYIRALLRRAELHEKTEKLDEALEDYKAILEKDPSVH 227
Query: 182 DAYVATKVSPDLKLKEKNGATK 203
A A P +++E+N K
Sbjct: 228 QAREACMRLPR-QIEERNEKLK 248
|
|
| UNIPROTKB|B6GVA2 int106 "Tetratricopeptide repeat protein" [Solanum lycopersicum (taxid:4081)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 47/126 (37%), Positives = 75/126 (59%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR---SCPRSCSVSRAVFYANRSAAL 117
++K A K EGNALF+ + E+L+KY AL+ P S + R++ +ANR+A
Sbjct: 82 NEKALAQANDAKVEGNALFKDGLYEEALSKYELALQVAADIPSSTEI-RSICHANRAACF 140
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
KL K +++I C+KA+ LNP+Y+K RRA +++ + +EA+ D KILEL+
Sbjct: 141 TKLG------KHEETIKECTKALELNPTYIKALVRRAEAHEKLEHFEEAITDMTKILELE 194
Query: 178 PNNRDA 183
P++ A
Sbjct: 195 PSHDQA 200
|
|
| TAIR|locus:2118776 TPR1 "tetratricopeptide repeat 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 46/125 (36%), Positives = 70/125 (56%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL---RSCPRSCSVSRAVFYANRSAALE 118
+K A K EGN LF + E+L+KY AL + P S + R++ Y NR
Sbjct: 99 EKALAEANEAKAEGNKLFVNGLYEEALSKYAFALELVQELPESIEL-RSICYLNRGVC-- 155
Query: 119 KLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
+L L K +++I C+KA+ LNP+Y K RRA +++ + ++A+ D +KILELDP
Sbjct: 156 ----FLKLGKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAVTDLKKILELDP 211
Query: 179 NNRDA 183
+N A
Sbjct: 212 SNDQA 216
|
|
| MGI|MGI:2444615 Sgtb "small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 175 (66.7 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 46/135 (34%), Positives = 69/135 (51%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A LKDEGN + ++ ++ Y +A+ P + AV+Y NR+AA KL+ Y
Sbjct: 85 ADQLKDEGNNHMKEENYAAAVDCYTQAIELDPNN-----AVYYCNRAAAQSKLSHYTD-- 137
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187
+I C KAI ++ Y K Y R +K +EA+ YQK L+LDP N D+Y +
Sbjct: 138 ----AIKDCEKAIAIDSKYSKAYGRMGLALTAMNKFEEAVTSYQKALDLDPEN-DSYKSN 192
Query: 188 KVSPDLKLKEKNGAT 202
+ KL+E + T
Sbjct: 193 LKIAEQKLREVSSPT 207
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 229 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-14 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-09 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 7e-09 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 2e-08 | |
| TIGR03939 | 800 | TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g | 1e-05 | |
| pfam00515 | 34 | pfam00515, TPR_1, Tetratricopeptide repeat | 2e-05 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 5e-05 | |
| pfam07719 | 34 | pfam07719, TPR_2, Tetratricopeptide repeat | 1e-04 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-04 | |
| pfam13181 | 34 | pfam13181, TPR_8, Tetratricopeptide repeat | 3e-04 | |
| TIGR02521 | 234 | TIGR02521, type_IV_pilW, type IV pilus biogenesis/ | 3e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 5e-04 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 8e-04 | |
| TIGR00990 | 615 | TIGR00990, 3a0801s09, mitochondrial precursor prot | 0.002 | |
| PLN03088 | 356 | PLN03088, PLN03088, SGT1, suppressor of G2 allele | 0.003 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-14
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
L + GN ++L + E+L Y +AL P + A Y N +AA Y L K +
Sbjct: 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN-----ADAYYNLAAA------YYKLGKYE 51
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+++ KA+ L+P K Y Y + K +EAL Y+K LELDPN
Sbjct: 52 EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-09
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 115 AALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174
A L Y L D+++ KA+ L+P Y A Y + K +EAL DY+K L
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 175 ELDPNNRDAY 184
ELDP+N AY
Sbjct: 62 ELDPDNAKAY 71
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-09
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 112 NRSAALEKLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS-DKLDEALAD 169
+ + AL+ L + L D++I A KA+ L+P + Y A Y + +EAL D
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 170 YQKILELDP 178
+K LELDP
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-09
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
A +LK+ GNALF+L + E++ Y +AL P + A Y N + A KL
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDN-----AEAYYNLALAYLKL----- 50
Query: 126 LEKPDQSILACSKAITLNP 144
+ ++++ KA+ L+P
Sbjct: 51 GKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-08
Identities = 35/146 (23%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 59 FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALE 118
++ ++ A LK++GN +R +++++ Y++A+ P V+Y+NR+A
Sbjct: 118 LSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP------VYYSNRAAC-- 169
Query: 119 KLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
+ +L ++ + + A+ L+P Y K RRA Y K +AL D +
Sbjct: 170 ----HNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT-ASCIID 224
Query: 179 NNRDAYVATKVSPDL------KLKEK 198
R+ A V L K KE
Sbjct: 225 GFRNEQSAQAVERLLKKFAESKAKEI 250
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 21/114 (18%)
Query: 77 ALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA-----NRSAALEKLASYLSLEKPDQ 131
A QW ++L Y + L+ P + + + AL+ L Y++ D
Sbjct: 95 AYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDA 154
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+ Y+ A + + ++ +AL +Q+ L L+P+N +A +
Sbjct: 155 A----------------RYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAAL 192
|
Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800 |
| >gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 2e-05
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
K Y + K DEAL Y+K LEL+PNN
Sbjct: 2 KALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34
|
Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 5e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
+ Y + DEAL Y+K LELDPNN
Sbjct: 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
+ Y + +EAL Y+K LELDPNN
Sbjct: 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
|
This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 2e-04
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + + DEA+ Y+K LELDP+N +AY
Sbjct: 4 EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAY 40
|
Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (94), Expect = 3e-04
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
+K + L + AL L E+L +Y EAL ++ ++ + A L
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD---DDAEALLNLGL 210
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
YL L K ++++ KA+ L+P + A L + + +EAL +K LELDP+
Sbjct: 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 3e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
+ Y ++Y Q +EA Y+K LELDPNN
Sbjct: 1 ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34
|
Length = 34 |
| >gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 8/91 (8%)
Query: 102 CSVSRAVFYANRSAALEKLA--------SYLSLEKPDQSILACSKAITLNPSYLKVYQRR 153
C + V ++R+ K A YL + + KA+ +P Y
Sbjct: 12 CVTTPDVPRSSRTTDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLAL 71
Query: 154 ARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A YQQ +L++A +++ L L+PNN D
Sbjct: 72 ALYYQQLGELEKAEDSFRRALTLNPNNGDVL 102
|
Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 12/143 (8%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
E A L G A L Q + Y +AL PRS L +L
Sbjct: 118 LLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAK---------LGLAQL 168
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
A L+ + D++ + +T +P + + L ++ ALA Y+K + L PNN
Sbjct: 169 A--LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226
Query: 181 RDAYVATKVSPDLKLKEKNGATK 203
+A + ++ E A K
Sbjct: 227 IAVLLA-LATILIEAGEFEEAEK 248
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 15/114 (13%)
Query: 76 NALFRL----NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131
AL L E++A +A P AL YL + +
Sbjct: 537 LALAGLYLRTGNEEEAVAWLEKAAELNP-----------QEIEPALALAQYYLGKGQLKK 585
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
++ ++A P + + R + L++A++ ++K+L L P++ A +
Sbjct: 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALL 639
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 8e-04
Identities = 13/64 (20%), Positives = 24/64 (37%)
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L + L D+++ A A+ P + + +L EA A + L
Sbjct: 1 LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60
Query: 177 DPNN 180
DP++
Sbjct: 61 DPDD 64
|
Length = 65 |
| >gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.002
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 15/123 (12%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR--SCSVSRAVFYANRSAALEKLAS 122
E+ AI+L G + E+LA ++++ PR + RA
Sbjct: 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGD------- 380
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
PD++ KA+ LN +Y RA+L+ + +A DYQK ++LDP+
Sbjct: 381 ------PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434
Query: 183 AYV 185
+++
Sbjct: 435 SHI 437
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615 |
| >gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.003
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 137 SKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++AI L+P+ ++Y RA+ + EA+AD K +ELDP+ AY
Sbjct: 26 TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY 73
|
Length = 356 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| KOG4626|consensus | 966 | 99.93 | ||
| KOG4626|consensus | 966 | 99.91 | ||
| KOG1126|consensus | 638 | 99.87 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| KOG1126|consensus | 638 | 99.86 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.83 | |
| KOG1125|consensus | 579 | 99.81 | ||
| KOG1155|consensus | 559 | 99.79 | ||
| KOG0553|consensus | 304 | 99.79 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| KOG4234|consensus | 271 | 99.79 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.79 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.77 | |
| KOG0547|consensus | 606 | 99.77 | ||
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.77 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.76 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.76 | |
| KOG1155|consensus | 559 | 99.76 | ||
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.75 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.75 | |
| KOG1125|consensus | 579 | 99.74 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.74 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.74 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.74 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.73 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.73 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.73 | |
| KOG0547|consensus | 606 | 99.72 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.72 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.71 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.7 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.69 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.69 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.68 | |
| KOG1173|consensus | 611 | 99.67 | ||
| KOG0548|consensus | 539 | 99.67 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.66 | |
| KOG1173|consensus | 611 | 99.65 | ||
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.64 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.62 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG0550|consensus | 486 | 99.62 | ||
| KOG0543|consensus | 397 | 99.62 | ||
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.61 | |
| KOG0548|consensus | 539 | 99.61 | ||
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.61 | |
| KOG1129|consensus | 478 | 99.61 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.61 | |
| KOG0624|consensus | 504 | 99.59 | ||
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.58 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.57 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.56 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.54 | |
| KOG3060|consensus | 289 | 99.53 | ||
| KOG2002|consensus | 1018 | 99.51 | ||
| KOG2002|consensus | 1018 | 99.5 | ||
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.49 | |
| KOG0550|consensus | 486 | 99.49 | ||
| KOG1129|consensus | 478 | 99.48 | ||
| KOG4162|consensus | 799 | 99.46 | ||
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.46 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.45 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.45 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.44 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.44 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.43 | |
| KOG0553|consensus | 304 | 99.43 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.42 | |
| KOG3060|consensus | 289 | 99.42 | ||
| KOG2003|consensus | 840 | 99.42 | ||
| KOG1174|consensus | 564 | 99.41 | ||
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.4 | |
| KOG0624|consensus | 504 | 99.4 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG2076|consensus | 895 | 99.4 | ||
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.39 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.38 | |
| KOG1840|consensus | 508 | 99.37 | ||
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.37 | |
| KOG1128|consensus | 777 | 99.36 | ||
| KOG4162|consensus | 799 | 99.35 | ||
| KOG2076|consensus | 895 | 99.35 | ||
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.35 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.34 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.33 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.33 | |
| KOG1127|consensus | 1238 | 99.31 | ||
| KOG1156|consensus | 700 | 99.31 | ||
| KOG2003|consensus | 840 | 99.31 | ||
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.31 | |
| KOG4648|consensus | 536 | 99.29 | ||
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.29 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.28 | |
| KOG1840|consensus | 508 | 99.27 | ||
| KOG1128|consensus | 777 | 99.27 | ||
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.27 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.25 | |
| KOG0495|consensus | 913 | 99.24 | ||
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.24 | |
| KOG1174|consensus | 564 | 99.22 | ||
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.21 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.2 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.19 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.19 | |
| KOG0495|consensus | 913 | 99.17 | ||
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.16 | |
| KOG0543|consensus | 397 | 99.16 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 99.15 | |
| KOG1127|consensus | 1238 | 99.14 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 99.13 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.13 | |
| KOG1156|consensus | 700 | 99.12 | ||
| KOG0551|consensus | 390 | 99.12 | ||
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 99.12 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 99.11 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.11 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.1 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 99.09 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.06 | |
| KOG4642|consensus | 284 | 99.06 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.05 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 99.04 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.04 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.03 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.03 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.02 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 99.0 | |
| KOG0376|consensus | 476 | 98.99 | ||
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.99 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.98 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.98 | |
| KOG0545|consensus | 329 | 98.96 | ||
| KOG4555|consensus | 175 | 98.95 | ||
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.88 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.87 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.86 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.86 | |
| KOG2376|consensus | 652 | 98.85 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.85 | |
| KOG4648|consensus | 536 | 98.83 | ||
| KOG4340|consensus | 459 | 98.82 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.82 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.78 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.77 | |
| KOG1130|consensus | 639 | 98.76 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.76 | |
| KOG4234|consensus | 271 | 98.74 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.72 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.71 | |
| KOG2796|consensus | 366 | 98.67 | ||
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.64 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.6 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.55 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.54 | |
| KOG3081|consensus | 299 | 98.52 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.51 | |
| KOG1308|consensus | 377 | 98.51 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.49 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.48 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.47 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.46 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 98.45 | |
| KOG1915|consensus | 677 | 98.45 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 98.44 | |
| KOG2796|consensus | 366 | 98.44 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.41 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.4 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.39 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.39 | |
| KOG4642|consensus | 284 | 98.35 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.34 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 98.32 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.31 | |
| KOG4555|consensus | 175 | 98.29 | ||
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.26 | |
| KOG1070|consensus | 1710 | 98.26 | ||
| KOG1130|consensus | 639 | 98.26 | ||
| KOG3785|consensus | 557 | 98.25 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.19 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.18 | |
| KOG2376|consensus | 652 | 98.16 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.15 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.14 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.14 | |
| KOG4340|consensus | 459 | 98.11 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 98.11 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.07 | |
| KOG0376|consensus | 476 | 98.07 | ||
| KOG2471|consensus | 696 | 98.07 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 98.06 | |
| KOG2610|consensus | 491 | 98.04 | ||
| KOG0545|consensus | 329 | 98.03 | ||
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.01 | |
| KOG1941|consensus | 518 | 98.01 | ||
| KOG1915|consensus | 677 | 98.0 | ||
| KOG3081|consensus | 299 | 97.97 | ||
| KOG3785|consensus | 557 | 97.96 | ||
| KOG1941|consensus | 518 | 97.93 | ||
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.91 | |
| KOG2047|consensus | 835 | 97.91 | ||
| KOG1586|consensus | 288 | 97.9 | ||
| KOG2053|consensus | 932 | 97.88 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.85 | |
| KOG1070|consensus | 1710 | 97.85 | ||
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.84 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.8 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.74 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.71 | |
| KOG1310|consensus | 758 | 97.71 | ||
| KOG2610|consensus | 491 | 97.69 | ||
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.69 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.68 | |
| KOG2471|consensus | 696 | 97.63 | ||
| KOG0551|consensus | 390 | 97.61 | ||
| KOG1586|consensus | 288 | 97.61 | ||
| KOG2053|consensus | 932 | 97.59 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.56 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 97.55 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 97.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.46 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.46 | |
| KOG2047|consensus | 835 | 97.45 | ||
| KOG3824|consensus | 472 | 97.44 | ||
| KOG4507|consensus | 886 | 97.4 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.39 | |
| KOG1308|consensus | 377 | 97.37 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.33 | |
| KOG0530|consensus | 318 | 97.3 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 97.26 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.24 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 97.2 | |
| KOG3824|consensus | 472 | 97.16 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.16 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.15 | |
| KOG2396|consensus | 568 | 97.11 | ||
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.11 | |
| KOG1585|consensus | 308 | 97.1 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.08 | |
| KOG1585|consensus | 308 | 97.05 | ||
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.04 | |
| KOG4814|consensus | 872 | 97.02 | ||
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 97.0 | |
| KOG3617|consensus | 1416 | 96.99 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.98 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.94 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.93 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.86 | |
| KOG3364|consensus | 149 | 96.82 | ||
| KOG3364|consensus | 149 | 96.77 | ||
| KOG0546|consensus | 372 | 96.77 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.77 | |
| KOG3617|consensus | 1416 | 96.73 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.68 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.68 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.66 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.6 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.59 | |
| KOG1550|consensus | 552 | 96.4 | ||
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 96.38 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.37 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.29 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.22 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 96.2 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.17 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.16 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.12 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.1 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.08 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.08 | |
| KOG4507|consensus | 886 | 96.05 | ||
| KOG2581|consensus | 493 | 96.02 | ||
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 95.95 | |
| KOG0530|consensus | 318 | 95.88 | ||
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.82 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.81 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.8 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.76 | |
| KOG0529|consensus | 421 | 95.75 | ||
| KOG3807|consensus | 556 | 95.75 | ||
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 95.73 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.72 | |
| KOG2300|consensus | 629 | 95.7 | ||
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.62 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.54 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.36 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.34 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 95.3 | |
| KOG1258|consensus | 577 | 95.27 | ||
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.21 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 95.16 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 95.12 | |
| KOG2300|consensus | 629 | 95.08 | ||
| KOG1310|consensus | 758 | 95.08 | ||
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 95.04 | |
| KOG2396|consensus | 568 | 95.03 | ||
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.95 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.93 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 94.89 | |
| KOG1550|consensus | 552 | 94.83 | ||
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.76 | |
| KOG1914|consensus | 656 | 94.73 | ||
| KOG4151|consensus | 748 | 94.73 | ||
| KOG2422|consensus | 665 | 94.52 | ||
| KOG4814|consensus | 872 | 94.48 | ||
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 94.45 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 94.45 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 94.34 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 94.31 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.28 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.23 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 94.15 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 94.01 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.78 | |
| KOG0529|consensus | 421 | 93.74 | ||
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.62 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.55 | |
| KOG2041|consensus | 1189 | 93.28 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 93.16 | |
| KOG1258|consensus | 577 | 93.14 | ||
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.88 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.86 | |
| KOG0985|consensus | 1666 | 92.83 | ||
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 92.78 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.7 | |
| KOG1839|consensus | 1236 | 92.23 | ||
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 92.18 | |
| KOG1839|consensus | 1236 | 92.12 | ||
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.1 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.02 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.38 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.35 | |
| KOG0546|consensus | 372 | 91.3 | ||
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.66 | |
| KOG1914|consensus | 656 | 90.58 | ||
| KOG3783|consensus | 546 | 90.53 | ||
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 90.24 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.78 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 89.78 | |
| KOG4014|consensus | 248 | 89.76 | ||
| KOG1463|consensus | 411 | 89.69 | ||
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.56 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.53 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 89.41 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.24 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.0 | |
| KOG0686|consensus | 466 | 88.91 | ||
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.55 | |
| KOG0890|consensus | 2382 | 88.47 | ||
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 87.69 | |
| COG5536 | 328 | BET4 Protein prenyltransferase, alpha subunit [Pos | 87.54 | |
| PF12854 | 34 | PPR_1: PPR repeat | 87.11 | |
| KOG3616|consensus | 1636 | 86.55 | ||
| KOG3807|consensus | 556 | 86.52 | ||
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 86.52 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 86.11 | |
| KOG3616|consensus | 1636 | 85.84 | ||
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 84.96 | |
| KOG0890|consensus | 2382 | 84.67 | ||
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 84.4 | |
| KOG2422|consensus | 665 | 83.75 | ||
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 83.71 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 83.28 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.11 | |
| KOG2581|consensus | 493 | 83.07 | ||
| PRK15490 | 578 | Vi polysaccharide biosynthesis protein TviE; Provi | 82.8 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.77 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 82.39 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 82.33 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 81.65 | |
| PF04212 | 69 | MIT: MIT (microtubule interacting and transport) d | 81.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 81.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 81.38 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 80.48 |
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=185.65 Aligned_cols=188 Identities=15% Similarity=0.213 Sum_probs=172.3
Q ss_pred CCCccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy13014 1 MKPLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR 80 (229)
Q Consensus 1 ~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (229)
|++-+|+++++.+|+++.++..+|..+... |+..++..+|.+++ ...|+.+++..++|+++..
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~-G~V~ea~~cYnkaL----------------~l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDK-GSVTEAVDCYNKAL----------------RLCPNHADAMNNLGNIYRE 366 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhc-cchHHHHHHHHHHH----------------HhCCccHHHHHHHHHHHHH
Confidence 356688899999999999999999999888 99999999998887 5778899999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS 160 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 160 (229)
+|.+++|...|.+++..+|.. +.++.++|.+ |.++|++++|+.+|++++.+.|.-+.++.++|..|..+
T Consensus 367 ~~~~e~A~~ly~~al~v~p~~-----aaa~nNLa~i------~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVFPEF-----AAAHNNLASI------YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred hccchHHHHHHHHHHhhChhh-----hhhhhhHHHH------HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 999999999999999999998 9999999999 99999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 161 DKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
|+...|+++|.+++.++|...+++.+++.++ +..++..+|+..|+.++ ++|+.+..
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~-kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIY-KDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHh-hccCCcHHHHHHHHHHHccCCCCchh
Confidence 9999999999999999999999999999999 88899999999999999 99976543
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-24 Score=178.36 Aligned_cols=204 Identities=19% Similarity=0.204 Sum_probs=179.7
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH------------------HHhhhhhhhHH
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHV------------------LFYLFCSQKLE 65 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~ 65 (229)
.-|.++++++|+++.+++.+|.++... +.++.|...|.+++...+..... -.|..+....|
T Consensus 239 q~y~eAvkldP~f~dAYiNLGnV~ke~-~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P 317 (966)
T KOG4626|consen 239 QHYEEAVKLDPNFLDAYINLGNVYKEA-RIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP 317 (966)
T ss_pred HHHHHhhcCCCcchHHHhhHHHHHHHH-hcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC
Confidence 458899999999999999999999999 99999999998887543211111 11334556778
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+.+.++.++|+++-..|+..+|+.+|++++.+.|.+ +++.+++|.+ +..+|..+.|...|.++++..|.
T Consensus 318 ~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h-----adam~NLgni------~~E~~~~e~A~~ly~~al~v~p~ 386 (966)
T KOG4626|consen 318 NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH-----ADAMNNLGNI------YREQGKIEEATRLYLKALEVFPE 386 (966)
T ss_pred CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc-----HHHHHHHHHH------HHHhccchHHHHHHHHHHhhChh
Confidence 899999999999999999999999999999999999 9999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccccC
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQHN 220 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~~ 220 (229)
.+.++.++|.+|.+.|++++|+.+|+.++++.|...+++.++|..+ ..+++...|+..|.+++ ++|.......|
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~-ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY-KEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH-HHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999 89999999999999999 99944443333
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-22 Score=166.89 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=165.7
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
+.+|++|+++||++.+++.++|.-+... ..++.|..+|.+++ ..+|..-.+|+.+|.+|.+++
T Consensus 441 ik~f~RAiQldp~faYayTLlGhE~~~~-ee~d~a~~~fr~Al----------------~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 441 IKCFKRAIQLDPRFAYAYTLLGHESIAT-EEFDKAMKSFRKAL----------------GVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred HHHHHHhhccCCccchhhhhcCChhhhh-HHHHhHHHHHHhhh----------------cCCchhhHHHHhhhhheeccc
Confidence 3456667777777777777777666666 66777777776666 678899999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
+++.|.-+|++|+.++|.+ ..+...+|.+ +.++|+.++|+..+++|+.++|.++-.-+..|.+++.+++
T Consensus 504 k~e~Ae~~fqkA~~INP~n-----svi~~~~g~~------~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINPSN-----SVILCHIGRI------QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhhHHHHHHHhhhcCCccc-----hhHHhhhhHH------HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 9999999999999999999 9999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+++|+..+++..++-|++..+++.+|.++ .+++....|++.|.-+. +||..-+
T Consensus 573 ~~eal~~LEeLk~~vP~es~v~~llgki~-k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQESSVFALLGKIY-KRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred hHHHHHHHHHHHHhCcchHHHHHHHHHHH-HHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999 89999999999999999 9995433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-21 Score=167.96 Aligned_cols=181 Identities=10% Similarity=0.101 Sum_probs=169.1
Q ss_pred chhhccc---CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 6 YQQELSK---NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 6 ~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
|+++++. +|+...++..+|.++... |++++|...+++++ ...|.....+..+|.++...|
T Consensus 317 ~~~al~~~~~~~~~a~a~~~lg~~~~~~-g~~~eA~~~~~kal----------------~l~P~~~~~~~~la~~~~~~g 379 (615)
T TIGR00990 317 FEKALDLGKLGEKEAIALNLRGTFKCLK-GKHLEALADLSKSI----------------ELDPRVTQSYIKRASMNLELG 379 (615)
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HcCCCcHHHHHHHHHHHHHCC
Confidence 4556654 588888999999999999 99999999999888 567888889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
++++|+..|++++..+|++ +.+++.+|.+ ++.+|++++|+.+|++++.++|++..++..+|.++..+|+
T Consensus 380 ~~~eA~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 380 DPDKAEEDFDKALKLNSED-----PDIYYHRAQL------HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred CHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999 9999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
+++|+..|++++...|+++.++..+|.++ ...+++.+|++.|.+++ ++|.+.
T Consensus 449 ~~eA~~~~~~al~~~P~~~~~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~p~~~ 501 (615)
T TIGR00990 449 IASSMATFRRCKKNFPEAPDVYNYYGELL-LDQNKFDEAIEKFDTAIELEKETK 501 (615)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999 88999999999999999 888643
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-22 Score=165.62 Aligned_cols=200 Identities=18% Similarity=0.182 Sum_probs=173.1
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-------HHHHHHHHH-----------hhhhhhhHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFY-------IQFIFHVLF-----------YLFCSQKLEQ 66 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~-----------~~~~~~~~~~ 66 (229)
.|++.-+.-++-..++..+|..++++ +++.+|...|+..-.. +..+...+. .......++.
T Consensus 341 ~~~klp~h~~nt~wvl~q~GrayFEl-~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~ 419 (638)
T KOG1126|consen 341 LFEKLPSHHYNTGWVLSQLGRAYFEL-IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPN 419 (638)
T ss_pred HHHhhHHhcCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCC
Confidence 34454445566678899999999999 9999999999765432 222222222 1234467788
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.|..|..+|+++.-+++++.|+++|++|+.++|.. +.+|..+|.= +....+++.|..+|++|+..+|.+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~f-----aYayTLlGhE------~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRF-----AYAYTLLGHE------SIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCcc-----chhhhhcCCh------hhhhHHHHhHHHHHHhhhcCCchh
Confidence 99999999999999999999999999999999998 9999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
-.+||.+|.+|.++++++.|.-.|++|++++|.+......+|.++ .++++.++|++.+.+++ ++|.|+-.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~-~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQ-HQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHH-HHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 999999999999999999999999999999999999999999998 89999999999999999 99987643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-20 Score=161.54 Aligned_cols=184 Identities=11% Similarity=0.146 Sum_probs=156.9
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|++..+++.+|.++... |++++|...|++++ ...|.++.+++.+|.+++..|++
T Consensus 353 ~~~kal~l~P~~~~~~~~la~~~~~~-g~~~eA~~~~~~al----------------~~~p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 353 DLSKSIELDPRVTQSYIKRASMNLEL-GDPDKAEEDFDKAL----------------KLNSEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCH
Confidence 47889999999999999999999999 99999999999887 45677888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
++|+.+|++++.++|++ ..++.++|.+ +..+|++++|+..|++++...|+++.++..+|.++...|+++
T Consensus 416 ~~A~~~~~kal~l~P~~-----~~~~~~la~~------~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDF-----IFSHIQLGVT------QYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHHHHHHHHHcCccC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 99999999999999998 8889999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHH------hccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 165 EALADYQKILELDPNNRDAYVA------TKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~------l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+|+..|+++++++|.+...+.+ .+.++....+++.+|.+.+++++ ++|++..
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~ 543 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDI 543 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 9999999999998875443322 12222144577888888888888 8876643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-20 Score=157.76 Aligned_cols=180 Identities=9% Similarity=-0.012 Sum_probs=162.0
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhh---------hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFS---------EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEG 75 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 75 (229)
.|+++++.+|+++.++..+|.++... + ++.+|...+++++ ...|+++.++..+|
T Consensus 283 ~~~~Al~ldP~~a~a~~~La~~~~~~-~~~g~~~~~~~~~~A~~~~~~Al----------------~ldP~~~~a~~~lg 345 (553)
T PRK12370 283 LLTQCVNMSPNSIAPYCALAECYLSM-AQMGIFDKQNAMIKAKEHAIKAT----------------ELDHNNPQALGLLG 345 (553)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHH-HHcCCcccchHHHHHHHHHHHHH----------------hcCCCCHHHHHHHH
Confidence 47899999999999999999887655 3 3678888888777 67899999999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 76 NALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
.++...|++++|+..|+++++++|++ +.+++.+|.+ +...|++++|+..++++++++|.++.+++.++.
T Consensus 346 ~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 346 LINTIHSEYIVGSLLFKQANLLSPIS-----ADIKYYYGWN------LFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 99999999999999999999999999 9999999999 999999999999999999999999888777888
Q ss_pred HHHhcccHHHHHHHHHHHHHhC-CCcHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 156 LYQQSDKLDEALADYQKILELD-PNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
++...|++++|+..+++++... |+++.++..++.++ ...++..+|...+.++. ..|.
T Consensus 415 ~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l-~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL-SLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH-HhCCCHHHHHHHHHHhhhccch
Confidence 8888999999999999999885 78899999999998 78899999999888876 5554
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=149.19 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=176.8
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
.|.|+.+++.+|.+.++|..+|.+.... ++-..++..+.+++ +.+|.+..++..+|..|...|
T Consensus 305 ~LafEAAVkqdP~haeAW~~LG~~qaEN-E~E~~ai~AL~rcl----------------~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 305 ALAFEAAVKQDPQHAEAWQKLGITQAEN-ENEQNAISALRRCL----------------ELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhhChHHHHHHHHhhhHhhhc-cchHHHHHHHHHHH----------------hcCCccHHHHHHHHHHHhhhh
Confidence 4789999999999999999999999999 99999999998888 788999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCc--------------------------------------hhhHHHHHhHhhhhhhhHHhh
Q psy13014 83 QWSESLAKYNEALRSCPRSCS--------------------------------------VSRAVFYANRSAALEKLASYL 124 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~--------------------------------------~~~~~~~~~lg~~~~~~~~~~ 124 (229)
.-.+|..++.+-+...|.... ...+++...||.+ |.
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL------y~ 441 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL------YN 441 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH------Hh
Confidence 999999999998877644311 1347888899999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccc
Q psy13014 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKL 204 (229)
Q Consensus 125 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 204 (229)
..|+|++|+.+|+.||..+|++...|.++|-.+....+.++||..|.+|+++.|....+++++|..| -.++.+.+|++.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~-mNlG~ykEA~~h 520 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC-MNLGAYKEAVKH 520 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh-hhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred ccccc-ccCCCcccccCCC
Q psy13014 205 SPDVF-LHPGQPQIQHNPE 222 (229)
Q Consensus 205 ~~~~~-~~p~~~~~~~~~~ 222 (229)
|-.++ +.++.......|.
T Consensus 521 lL~AL~mq~ks~~~~~~~~ 539 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPM 539 (579)
T ss_pred HHHHHHhhhcccccccCCc
Confidence 99999 8886555555443
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=137.79 Aligned_cols=175 Identities=19% Similarity=0.229 Sum_probs=152.8
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
=|+++|++||+...+|.++|.-+..+ ++...|+..|.+++ +..|.+-.+|+.+|++|..++..
T Consensus 352 YFkRALkLNp~~~~aWTLmGHEyvEm-KNt~AAi~sYRrAv----------------di~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 352 YFKRALKLNPKYLSAWTLMGHEYVEM-KNTHAAIESYRRAV----------------DINPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred HHHHHHhcCcchhHHHHHhhHHHHHh-cccHHHHHHHHHHH----------------hcCchhHHHHhhhhHHHHHhcch
Confidence 47899999999999999999999999 99999999999888 78899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
.=|+-+|++|+...|.+ +.+|..+|.| |.++++.++|+.+|.+++.....+..++..+|.+|.++++++
T Consensus 415 ~YaLyYfqkA~~~kPnD-----sRlw~aLG~C------Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 415 FYALYYFQKALELKPND-----SRLWVALGEC------YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHHHHHHhcCCCc-----hHHHHHHHHH------HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 99999999999999998 9999999999 999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHH-------hCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 165 EALADYQKILE-------LDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 165 ~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
+|..+|++.++ .+|....+...|+.-. .+++++.+|.......
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f-~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF-KKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH-HhhcchHHHHHHHHHH
Confidence 99999999988 4566666766777666 7777777765544433
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=133.76 Aligned_cols=122 Identities=38% Similarity=0.615 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
....+..+...|+-+.+.++|.+|+..|.+||.++|.+ +.+|.++|.+ |.++|+++.|++.++.+|.++
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n-----AVyycNRAAA------y~~Lg~~~~AVkDce~Al~iD 145 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN-----AVYYCNRAAA------YSKLGEYEDAVKDCESALSID 145 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-----chHHHHHHHH------HHHhcchHHHHHHHHHHHhcC
Confidence 45677889999999999999999999999999999999 9999999999 999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
|...++|.++|.+|..+|++++|++.|++++.++|++...+.+|..+. .++++
T Consensus 146 p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae-~~l~e 198 (304)
T KOG0553|consen 146 PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAE-QKLNE 198 (304)
T ss_pred hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH-HHhcC
Confidence 999999999999999999999999999999999999999999998776 55444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=154.62 Aligned_cols=198 Identities=11% Similarity=0.039 Sum_probs=143.5
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----HHHH------------HHH-hhhhhhhHHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ----FIFH------------VLF-YLFCSQKLEQTA 68 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~------------~~~-~~~~~~~~~~~~ 68 (229)
|.+++...|++. .+..+|.++... |++++|...|++....-+ .... ... +.......|...
T Consensus 499 ~~~Al~~~Pd~~-~~L~lA~al~~~-Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 499 WLQAEQRQPDAW-QHRAVAYQAYQV-EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHHHhCCchH-HHHHHHHHHHHC-CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH
Confidence 566777777654 355566666666 777777777766543100 0000 000 001112223344
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
.....++......|++++|+..|++++.++| + +.++.++|.+ +.++|++++|+..+++++.++|+++.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P-~-----~~a~~~LA~~------l~~lG~~deA~~~l~~AL~l~Pd~~~ 644 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAP-S-----ANAYVARATI------YRQRHNVPAAVSDLRAALELEPNNSN 644 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-C-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 4444555555666888888888888888888 4 6778888888 88888888888888888888888888
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
++.++|.++...|++++|+..|+++++++|+++.++.+++.++ ..++++.+|+..+.+++ ++|++..+.
T Consensus 645 a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al-~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 645 YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVN-QRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 8888888888888888888888888888888888888888888 88888888888888888 888776654
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-18 Score=123.14 Aligned_cols=156 Identities=42% Similarity=0.621 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
...+.-+..-|+-++..|+|.+|...|..|+.+.|......+..+|.++|.+ +++++.++.||..+.++|+++|
T Consensus 92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa------~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAA------LIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHH------HHHhhhHHHHHHHHHhhHhcCc
Confidence 4566778889999999999999999999999999988777889999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch------HHHhh-hhhcccccccccccC-----
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD------LKLKE-KNGATKLSPDVFLHP----- 212 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~------~~~~~-~~~a~~~~~~~~~~p----- 212 (229)
...+++.+.|.+|.++.+|++|+..|++.++.+|....+...+.++-. ++|+. +...++.++++++.|
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGlSt 245 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGLST 245 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 999999999999999999999999999999999999999999888864 33433 777899999999999
Q ss_pred CCcccccCCCCcCC
Q psy13014 213 GQPQIQHNPETIHG 226 (229)
Q Consensus 213 ~~~~~~~~~~~~~~ 226 (229)
+||+++++|.+...
T Consensus 246 dnFqmvqd~nTGsy 259 (271)
T KOG4234|consen 246 DNFQMVQDPNTGSY 259 (271)
T ss_pred cceeeeeCCCCCce
Confidence 99999999997653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-18 Score=120.62 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=106.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
+...|.++...|++++|+..|++++..+|.+ ..++..+|.+ +..+|++++|+..|++++.++|+++.++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~------~~~~g~~~~A~~~y~~Al~l~p~~~~a~ 95 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS-----WRAHIALAGT------WMMLKEYTTAINFYGHALMLDASHPEPV 95 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 6678999999999999999999999999999 9999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+++|.++..+|++++|+..|++++.+.|+++..+.+++.+.
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.78 E-value=8e-18 Score=129.19 Aligned_cols=167 Identities=10% Similarity=0.052 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...++.+|.++... |++++|...+++.+ ...|.+..++..+|.++...|++++|+..+++++.
T Consensus 31 ~~~~~~la~~~~~~-~~~~~A~~~~~~~l----------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 31 AKIRVQLALGYLEQ-GDLEVAKENLDKAL----------------EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT 93 (234)
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777777 77777777776665 34455566677777777777777777777777777
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--PSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
..|.+ ..++.++|.+ +...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++
T Consensus 94 ~~~~~-----~~~~~~~~~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 94 LNPNN-----GDVLNNYGTF------LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred hCCCC-----HHHHHHHHHH------HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766 6677777777 777777777777777776643 3445566667777777777777777777777
Q ss_pred HhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 175 ELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 175 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
+.+|++...+..++.++ ...+++.+|...+.+++ ..|
T Consensus 163 ~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~ 200 (234)
T TIGR02521 163 QIDPQRPESLLELAELY-YLRGQYKDARAYLERYQQTYN 200 (234)
T ss_pred HhCcCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCC
Confidence 77777777777777666 66666666666666665 444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.3e-18 Score=152.19 Aligned_cols=195 Identities=9% Similarity=-0.099 Sum_probs=157.3
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-----------------HHHH-hhhhhhhHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF-----------------HVLF-YLFCSQKLEQT 67 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~-~~~~~~~~~~~ 67 (229)
|++++...|. ...++..|.++... |++++|..++.+++...+... ..+. +.......|.
T Consensus 532 ~rka~~~~p~-~~a~~~la~all~~-Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~- 608 (987)
T PRK09782 532 WQKISLHDMS-NEDLLAAANTAQAA-GNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS- 608 (987)
T ss_pred HHHHhccCCC-cHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-
Confidence 4555554444 34456667777777 777777777765553210000 0000 1122234454
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.++..+|.++.+.|++++|+..|++++.++|++ +.++.++|.+ +...|++++|+..++++++++|+++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~-----~~a~~nLG~a------L~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN-----SNYQAALGYA------LWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 7889999999999999999999999999999999 9999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
.+++++|.++..+|++++|+..|+++++++|++..+....+.+. .....+..+.+.+.+.. +.|..+
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~-~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN-QQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH-HHHHHHHHHHHHHHHHhhcCccch
Confidence 99999999999999999999999999999999999999999998 77777889999888888 877544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-18 Score=157.38 Aligned_cols=197 Identities=14% Similarity=0.065 Sum_probs=140.6
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|+++.+++.+|.++... |++++|...|++++...+.......+.. .............|.++...|++
T Consensus 291 ~l~~aL~~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~l~~Al~~~p~~~~~~~~~~--ll~~~~~~~~~~~g~~~~~~g~~ 367 (1157)
T PRK11447 291 ELQQAVRANPKDSEALGALGQAYSQQ-GDRARAVAQFEKALALDPHSSNRDKWES--LLKVNRYWLLIQQGDAALKANNL 367 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCccchhHHHH--HHHhhhHHHHHHHHHHHHHCCCH
Confidence 57889999999999999999999999 9999999999988743210000000000 00001122334557777778888
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH--------
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL-------- 156 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-------- 156 (229)
++|+..|++++..+|.+ +.++..+|.+ +...|++++|++.|+++++++|++..++..++.+
T Consensus 368 ~eA~~~~~~Al~~~P~~-----~~a~~~Lg~~------~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 368 AQAERLYQQARQVDNTD-----SYAVLGLGDV------AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 88888888888888777 7777778888 7788888888888888888877776655444433
Q ss_pred ----------------------------------HHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 157 ----------------------------------YQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 157 ----------------------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
+...|++++|+..|+++++++|+++.+++.++.++ .+.++..+|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~-~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDL-RQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHH
Confidence 34567778888888888888888888878888777 7777778888
Q ss_pred ccccccc-ccCCCcc
Q psy13014 203 KLSPDVF-LHPGQPQ 216 (229)
Q Consensus 203 ~~~~~~~-~~p~~~~ 216 (229)
..+.+++ .+|++..
T Consensus 516 ~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 516 ALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHcCCCCHH
Confidence 7777777 6776543
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=137.67 Aligned_cols=175 Identities=19% Similarity=0.253 Sum_probs=162.9
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++..+||+++.+++.+|.+.+.+ +++++|..-|++++ ...|+++..+..++...++++++.
T Consensus 383 F~~A~~ldp~n~dvYyHRgQm~flL-~q~e~A~aDF~Kai----------------~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 383 FNKAEDLDPENPDVYYHRGQMRFLL-QQYEEAIADFQKAI----------------SLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHHhcCCCCCchhHhHHHHHHHH-HHHHHHHHHHHHHh----------------hcChhhhHHHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999 99999999999998 688999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHH-
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS------YLKVYQRRARLYQ- 158 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~- 158 (229)
++...|+.+++..|+. +.++...|.+ +..++++++|++.|++++++.|. ++..+...|.+..
T Consensus 446 ~~m~~Fee~kkkFP~~-----~Evy~~fAei------LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPNC-----PEVYNLFAEI------LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHhCCCC-----chHHHHHHHH------HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 9999999999999999 9999999999 99999999999999999999999 7777777766544
Q ss_pred hcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 159 QSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
-.+++.+|+..+++++++||....++..++.+. .+.++..+|++.|+++.
T Consensus 515 wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~-lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 515 WKEDINQAENLLRKAIELDPKCEQAYETLAQFE-LQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 468999999999999999999999999999998 88899999999998876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.5e-18 Score=134.51 Aligned_cols=178 Identities=13% Similarity=0.007 Sum_probs=139.9
Q ss_pred chhhcc---cCCch-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc
Q psy13014 6 YQQELS---KNPSF-LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL 81 (229)
Q Consensus 6 ~~~~l~---~~p~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (229)
+.++|. .+|+. +..++.+|.++... |++.+|...|++++ ...|+++.+++.+|.++...
T Consensus 49 ~~~~l~~~~~~~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~Al----------------~l~P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 49 LNQILASRDLTDEERAQLHYERGVLYDSL-GLRALARNDFSQAL----------------ALRPDMADAYNYLGIYLTQA 111 (296)
T ss_pred HHHHHccccCCcHhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HcCCCCHHHHHHHHHHHHHC
Confidence 345664 34433 67799999999999 99999999998887 57788899999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
|++++|+..|+++++++|++ ..++.++|.+ +...|++++|+..++++++++|+++...... .+....+
T Consensus 112 g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~ 179 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTY-----NYAYLNRGIA------LYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKL 179 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccC
Confidence 99999999999999999999 9999999999 9999999999999999999999987422111 1233455
Q ss_pred cHHHHHHHHHHHHH-------------------------------------hCCCcHHHHHHhccCchHHHhhhhhcccc
Q psy13014 162 KLDEALADYQKILE-------------------------------------LDPNNRDAYVATKVSPDLKLKEKNGATKL 204 (229)
Q Consensus 162 ~~~~A~~~~~~al~-------------------------------------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 204 (229)
++++|+..+.+++. ++|...++|+++|.++ .+.++..+|+..
T Consensus 180 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~-~~~g~~~~A~~~ 258 (296)
T PRK11189 180 DPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYY-LSLGDLDEAAAL 258 (296)
T ss_pred CHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHH
Confidence 66666666654433 2333445677777777 788888889999
Q ss_pred ccccc-ccCC
Q psy13014 205 SPDVF-LHPG 213 (229)
Q Consensus 205 ~~~~~-~~p~ 213 (229)
|.+++ .+|.
T Consensus 259 ~~~Al~~~~~ 268 (296)
T PRK11189 259 FKLALANNVY 268 (296)
T ss_pred HHHHHHhCCc
Confidence 99888 7763
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=125.93 Aligned_cols=166 Identities=14% Similarity=0.173 Sum_probs=144.8
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|++..++..+|.++... |++++|...+++++ ...|.....+..+|.++...|++++|+..++
T Consensus 61 ~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al----------------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 123 (234)
T TIGR02521 61 DPDDYLAYLALALYYQQL-GELEKAEDSFRRAL----------------TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE 123 (234)
T ss_pred CcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 045667888899999999 99999999998887 4556677899999999999999999999999
Q ss_pred HHHHhC--CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 93 EALRSC--PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 93 ~al~~~--p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+++... +.. ...+..+|.+ +...|++++|+..+.+++..+|++..++..+|.++...|++++|+..+
T Consensus 124 ~~~~~~~~~~~-----~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 192 (234)
T TIGR02521 124 QAIEDPLYPQP-----ARSLENAGLC------ALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYL 192 (234)
T ss_pred HHHhccccccc-----hHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999864 333 7789999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccc
Q psy13014 171 QKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPD 207 (229)
Q Consensus 171 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 207 (229)
++++...|.++..+..++.+. ...++..++......
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 193 ERYQQTYNQTAESLWLGIRIA-RALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHhCCCCHHHHHHHHHHH-HHHhhHHHHHHHHHH
Confidence 999999999888888888777 677777777665443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=143.86 Aligned_cols=159 Identities=14% Similarity=-0.038 Sum_probs=146.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.++++++++|+++.++..+|.++... |++++|...|++++ ...|+++.+++.+|.++...|++
T Consensus 326 ~~~~Al~ldP~~~~a~~~lg~~~~~~-g~~~~A~~~~~~Al----------------~l~P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 326 HAIKATELDHNNPQALGLLGLINTIH-SEYIVGSLLFKQAN----------------LLSPISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHCCCH
Confidence 36789999999999999999999999 99999999999998 67789999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhcccH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-PSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 163 (229)
++|+..++++++++|.+ +..+..++.+ ++..|++++|+..+++++... |+++.++..+|.++..+|++
T Consensus 389 ~eAi~~~~~Al~l~P~~-----~~~~~~~~~~------~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~ 457 (553)
T PRK12370 389 EEALQTINECLKLDPTR-----AAAGITKLWI------TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH 457 (553)
T ss_pred HHHHHHHHHHHhcCCCC-----hhhHHHHHHH------HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence 99999999999999998 7777777777 778999999999999999875 78899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 164 DEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 164 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
++|+..+.++....|....+...++.++
T Consensus 458 ~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 458 ELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 9999999999999999888888887766
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=146.75 Aligned_cols=197 Identities=12% Similarity=0.035 Sum_probs=101.0
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-------HHH----------hh-hhhhhHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFH-------VLF----------YL-FCSQKLEQ 66 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~----------~~-~~~~~~~~ 66 (229)
.|+++++.+|+++.++..+|.++... |++++|...+++++...+.... ... .. ......|.
T Consensus 98 ~l~~~l~~~P~~~~a~~~la~~l~~~-g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~ 176 (656)
T PRK15174 98 VVNKLLAVNVCQPEDVLLVASVLLKS-KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP 176 (656)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence 46777888888888888888888888 8888888888777632110000 000 00 01112222
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+.++...+ .+...|++++|+..+++++..+|... ......++.+ +...|++++|+..+++++..+|++
T Consensus 177 ~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~----~~~~~~l~~~------l~~~g~~~eA~~~~~~al~~~p~~ 245 (656)
T PRK15174 177 RGDMIATCL-SFLNKSRLPEDHDLARALLPFFALER----QESAGLAVDT------LCAVGKYQEAIQTGESALARGLDG 245 (656)
T ss_pred CHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc----hhHHHHHHHH------HHHCCCHHHHHHHHHHHHhcCCCC
Confidence 333333322 35555666666666666555544220 1111222333 444455555555555555555555
Q ss_pred HHHHHHHHHHHHhcccHHH----HHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 147 LKVYQRRARLYQQSDKLDE----ALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+.+++.+|.++...|++++ |+..|+++++++|++..++..++.++ ...+++.+|+..+.+++ ++|++
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l-~~~g~~~eA~~~l~~al~l~P~~ 317 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL-IRTGQNEKAIPLLQQSLATHPDL 317 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCC
Confidence 5555555555555555543 45555555555555555555555554 44445555555555554 44443
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-18 Score=136.10 Aligned_cols=164 Identities=17% Similarity=0.187 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+++....|--+... ++.+.|+.+|++++ +..|....+|..+|..+..+++...|++.|++|++
T Consensus 330 ~ETCCiIaNYYSlr-~eHEKAv~YFkRAL----------------kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 330 PETCCIIANYYSLR-SEHEKAVMYFKRAL----------------KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred ccceeeehhHHHHH-HhHHHHHHHHHHHH----------------hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 33334444445555 66677777777776 78899999999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
++|.+ ..+|+.+|.+ |--++.+.=|+-+|++|++..|+++..|..+|.||.++++.++|+.+|.+++..
T Consensus 393 i~p~D-----yRAWYGLGQa------Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 393 INPRD-----YRAWYGLGQA------YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred cCchh-----HHHHhhhhHH------HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 99999 9999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 177 DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 177 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+..+..++..+|.++ +++++..+|.+.|.+-+
T Consensus 462 ~dte~~~l~~LakLy-e~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 462 GDTEGSALVRLAKLY-EELKDLNEAAQYYEKYV 493 (559)
T ss_pred cccchHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 999999999999999 99999999988887655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=145.29 Aligned_cols=196 Identities=11% Similarity=0.044 Sum_probs=152.2
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH--------HHHHHH----------H-hhhhhhhHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ--------FIFHVL----------F-YLFCSQKLEQ 66 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~----------~-~~~~~~~~~~ 66 (229)
|++.+..+|+++..+...+ .+... |++++|...+++.+...+ .....+ . +.......|.
T Consensus 167 ~~~~~~~~P~~~~a~~~~~-~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 167 ARTQAQEVPPRGDMIATCL-SFLNK-SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred HHHHHHhCCCCHHHHHHHH-HHHHc-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5566778888888776654 36666 888888888876543210 000000 0 1122234566
Q ss_pred HHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 67 TAISLKDEGNALFRLNQWSE----SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
++.++..+|..+...|++++ |+..|++++.++|++ +.++..+|.+ +...|++++|+..+++++.+
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~------l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-----VRIVTLYADA------LIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh
Confidence 77888889999999999885 788999999999988 8889999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
+|+++.++..+|.++...|++++|+..|++++..+|++...+..++.++ ...++..+|+..|.+++ .+|++.
T Consensus 314 ~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al-~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 314 HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAAL-LQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999999999999999999999999998887776677777 77888899999888888 888654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=118.44 Aligned_cols=126 Identities=14% Similarity=0.085 Sum_probs=117.2
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
-|+++++.+|++ ++.+|.++... |++++|...|.+++ ...|.++.++..+|.++...|++
T Consensus 15 ~~~~al~~~p~~---~~~~g~~~~~~-g~~~~A~~~~~~al----------------~~~P~~~~a~~~lg~~~~~~g~~ 74 (144)
T PRK15359 15 ILKQLLSVDPET---VYASGYASWQE-GDYSRAVIDFSWLV----------------MAQPWSWRAHIALAGTWMMLKEY 74 (144)
T ss_pred HHHHHHHcCHHH---HHHHHHHHHHc-CCHHHHHHHHHHHH----------------HcCCCcHHHHHHHHHHHHHHhhH
Confidence 378899999997 55679999999 99999999999887 67889999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
++|+..|++++.++|.+ +.+++++|.+ +..+|++++|+..|++++.+.|+++..+.++|.+...++
T Consensus 75 ~~A~~~y~~Al~l~p~~-----~~a~~~lg~~------l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 75 TTAINFYGHALMLDASH-----PEPVYQTGVC------LKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHhcCCCC-----cHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999 999999999999999999999999999999998876544
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=138.33 Aligned_cols=165 Identities=13% Similarity=0.152 Sum_probs=143.8
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH------------------------HHHHHHH-h
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ------------------------FIFHVLF-Y 57 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------------------------~~~~~~~-~ 57 (229)
+.+++++++++|++..++..+|+.|... |.-.+|...+.+.+.... .+.++.. +
T Consensus 339 i~AL~rcl~LdP~NleaLmaLAVSytNe-g~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~f 417 (579)
T KOG1125|consen 339 ISALRRCLELDPTNLEALMALAVSYTNE-GLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELF 417 (579)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999 999999999988764321 1111111 2
Q ss_pred hhhhhhHH--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHH
Q psy13014 58 LFCSQKLE--QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILA 135 (229)
Q Consensus 58 ~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~ 135 (229)
+......+ .++++...+|..|...|+|++|+.+|+.|+...|++ ..+|..+|.. +-.-.+.++||..
T Consensus 418 Leaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd-----~~lWNRLGAt------LAN~~~s~EAIsA 486 (579)
T KOG1125|consen 418 LEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND-----YLLWNRLGAT------LANGNRSEEAISA 486 (579)
T ss_pred HHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch-----HHHHHHhhHH------hcCCcccHHHHHH
Confidence 23333444 788999999999999999999999999999999999 9999999999 9999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 136 CSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 136 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
|.+|+++.|..+++.+++|.++.++|.|++|+++|-.||.+.+.
T Consensus 487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999998765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-17 Score=135.43 Aligned_cols=202 Identities=11% Similarity=0.079 Sum_probs=139.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-------HHHH--------------HHHhh-hhhh
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ-------FIFH--------------VLFYL-FCSQ 62 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~--------------~~~~~-~~~~ 62 (229)
-|+++++.+|++..+++.+|.++... |++++|...+++.+..-. .... ....+ ....
T Consensus 57 ~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 57 LFIEMLKVDPETVELHLALGNLFRRR-GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHc-CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 47889999999999999999999999 999999998877653210 0000 00000 1111
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+....++..++.++...|++++|+..+++++...|.+........+..+|.+ +...|++++|+..++++++.
T Consensus 136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 136 EGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ------ALARGDLDAARALLKKALAA 209 (389)
T ss_pred CCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHhH
Confidence 234455667777777777777777777777777766654222223455667777 77778888888888888877
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH-HHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR-DAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+|++..+++.+|.++...|++++|+..+++++..+|.+. ..+..++.++ ...++..+|...+.++. ..|+.
T Consensus 210 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 210 DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY-QALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc
Confidence 777777777788888888888888888888877777653 4556666666 66777777777777776 66643
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=122.23 Aligned_cols=155 Identities=13% Similarity=0.100 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
++..+|.-|+.. |++..|...+++++ ..+|....+|..++.+|...|+.+.|-+.|++|++++
T Consensus 37 arlqLal~YL~~-gd~~~A~~nlekAL----------------~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~ 99 (250)
T COG3063 37 ARLQLALGYLQQ-GDYAQAKKNLEKAL----------------EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA 99 (250)
T ss_pred HHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC
Confidence 445555555555 55555555555555 4555555555555555555555555555555555555
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
|++ .++++|.|.- +..+|++++|...|++|+.. .|..+.++-|+|.|..+.|+++.|...|++++++
T Consensus 100 p~~-----GdVLNNYG~F------LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 100 PNN-----GDVLNNYGAF------LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred CCc-----cchhhhhhHH------HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 555 5555555555 55555555555555555543 2334455555555555555555555555555555
Q ss_pred CCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 177 DPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 177 ~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
+|+++.....++... .+.+++..|.
T Consensus 169 dp~~~~~~l~~a~~~-~~~~~y~~Ar 193 (250)
T COG3063 169 DPQFPPALLELARLH-YKAGDYAPAR 193 (250)
T ss_pred CcCCChHHHHHHHHH-HhcccchHHH
Confidence 555555555555554 3344444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-17 Score=130.20 Aligned_cols=175 Identities=12% Similarity=0.081 Sum_probs=140.2
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFS-EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
+.++++++|++..++..++.++..+ | +++++...+++.+ ...|++..+|...+.+....+..
T Consensus 60 t~~aI~lnP~~ytaW~~R~~iL~~L-~~~l~eeL~~~~~~i----------------~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 60 TADVIRLNPGNYTVWHFRRLCLEAL-DADLEEELDFAEDVA----------------EDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHHHCchhHHHHHHHHHHHHHc-chhHHHHHHHHHHHH----------------HHCCcchHHhHHHHHHHHHcCch
Confidence 5678888999999999999888888 7 5788888887777 57788888888888888888764
Q ss_pred --HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc--
Q psy13014 85 --SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS-- 160 (229)
Q Consensus 85 --~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-- 160 (229)
.+++.++++++..+|.+ ..+|.++|.+ +..+|++++|+++++++|+.+|.+..+|+.++.+...+
T Consensus 123 ~~~~el~~~~kal~~dpkN-----y~AW~~R~w~------l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 123 AANKELEFTRKILSLDAKN-----YHAWSHRQWV------LRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL 191 (320)
T ss_pred hhHHHHHHHHHHHHhCccc-----HHHHHHHHHH------HHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc
Confidence 67888888999999988 8899999999 88888899999999999999999999999999888776
Q ss_pred -ccH----HHHHHHHHHHHHhCCCcHHHHHHhccCchHH----Hhhhhhccccccccc
Q psy13014 161 -DKL----DEALADYQKILELDPNNRDAYVATKVSPDLK----LKEKNGATKLSPDVF 209 (229)
Q Consensus 161 -~~~----~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~ 209 (229)
|.+ ++++.+..+++.++|++..+|..++.++ .. +....++...+..++
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll-~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLF-KDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred cccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHH-hcCCcccccchhHHHHHHHhh
Confidence 323 4678888899999999999998888887 33 122334545555444
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=144.88 Aligned_cols=198 Identities=20% Similarity=0.182 Sum_probs=168.0
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH-----------------HHHHHhhhh--hhhH
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFI-----------------FHVLFYLFC--SQKL 64 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~~~--~~~~ 64 (229)
..|+++++.+|+++.+++.+|.++... |++++|...+++.+...+.. ...+..+.. ....
T Consensus 43 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~ 121 (899)
T TIGR02917 43 IQLKNALQKDPNDAEARFLLGKIYLAL-GDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDD 121 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCc
Confidence 457889999999999999999999999 99999999998876431100 011111111 1245
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
+..+..+..+|.++...|++++|+..|++++..+|.+ ..++..+|.+ +...|++++|+..++++++.+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~~ 190 (899)
T TIGR02917 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS-----LYAKLGLAQL------ALAENRFDEARALIDEVLTADP 190 (899)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----hhhHHHHHHH------HHHCCCHHHHHHHHHHHHHhCC
Confidence 6777889999999999999999999999999999988 8899999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
.+..++..+|.++...|++++|+..|++++..+|+++..+..++.++ ...+++.+|...+..+. ..|++
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~ 260 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATIL-IEAGEFEEAEKHADALLKKAPNS 260 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999888 77788888888888777 66654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=144.87 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=96.1
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++++.+|++..+++.++.++... |++++|...+++.+ ...|.+..++..++.++...|+++
T Consensus 488 ~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~ 550 (899)
T TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQE-GNPDDAIQRFEKVL----------------TIDPKNLRAILALAGLYLRTGNEE 550 (899)
T ss_pred HHHHHhhCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcCcHHHHHHHHHHHHHcCCHH
Confidence 3344444555555555555444444 55555544444443 223344445555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
+|+..+++++..+|.+ ...+..++.+ +...|++++|+..+++++...|.++.++..+|.++...|++++
T Consensus 551 ~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 551 EAVAWLEKAAELNPQE-----IEPALALAQY------YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHHHHHHHhCccc-----hhHHHHHHHH------HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555554 4555555555 5555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 166 ALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 166 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
|+..|+++++.+|.++..+..++.++ ...++..+|+..+.+++ .+|+
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~ 667 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAY-AVMKNYAKAITSLKRALELKPD 667 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCC
Confidence 55555555555555555555555555 45555555555555555 4444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-16 Score=149.44 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=155.8
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH----------------hhhhh-hh----
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF----------------YLFCS-QK---- 63 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------~~~~~-~~---- 63 (229)
.|+++++.+|++..+++.+|.++... |++++|...|++++...+....... ++... ..
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~-g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMAR-KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 47889999999999999999999999 9999999999988743221111000 00000 00
Q ss_pred -----HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 64 -----LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 64 -----~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
..-....+..+|..+...|++++|+..|+++++++|++ +.+++.+|.+ +...|++++|+..+++
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~-----~~~~~~LA~~------~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGS-----VWLTYRLAQD------LRQAGQRSQADALMRR 520 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHH
Confidence 00113456678999999999999999999999999999 9999999999 9999999999999999
Q ss_pred HHhcCCCcHHHH--------------------------------------------------------------------
Q psy13014 139 AITLNPSYLKVY-------------------------------------------------------------------- 150 (229)
Q Consensus 139 al~~~p~~~~~~-------------------------------------------------------------------- 150 (229)
++..+|+++.++
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 988888776533
Q ss_pred ------HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 151 ------QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 151 ------~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+.+|.++...|++++|+..|+++++.+|+++.++..++.++ ...++..+|++.+.+++ ..|+++.
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~-~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVD-IAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHhccCCCChH
Confidence 34566677778888888888888888888888888888888 77788888888888777 6665543
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-17 Score=133.02 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
..++...|..++.. |+...+-..|++.+ ..++.....+..+|..|.+..+..+....|++|.+
T Consensus 326 A~al~~~gtF~fL~-g~~~~a~~d~~~~I----------------~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ 388 (606)
T KOG0547|consen 326 AEALLLRGTFHFLK-GDSLGAQEDFDAAI----------------KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED 388 (606)
T ss_pred HHHHHHhhhhhhhc-CCchhhhhhHHHHH----------------hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence 45666677767666 77777777777666 34455555566677777777777777777777777
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
++|.+ +++|+.+|.+ ++-++++++|+..|++++.++|.+.-++..++.+.+++++++++...|+.++..
T Consensus 389 ldp~n-----~dvYyHRgQm------~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk 457 (606)
T KOG0547|consen 389 LDPEN-----PDVYYHRGQM------RFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK 457 (606)
T ss_pred cCCCC-----CchhHhHHHH------HHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776 7777777777 777777777777777777777777777777777777777777777777777777
Q ss_pred CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 177 DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 177 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
-|+.++.+...+.++ ...+++.+|++.|..++ +.|.
T Consensus 458 FP~~~Evy~~fAeiL-tDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 458 FPNCPEVYNLFAEIL-TDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred CCCCchHHHHHHHHH-hhHHhHHHHHHHHHHHHhhccc
Confidence 777777777777776 66666777777777766 6664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=117.97 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
..-..+...+|..|++.|++..|..-++++++.+|++ ..+|..++.+ |..+|+.+.|-+.|++|++++|
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~-----~~a~~~~A~~------Yq~~Ge~~~A~e~YrkAlsl~p 100 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY-----YLAHLVRAHY------YQKLGENDLADESYRKALSLAP 100 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHH------HHHcCChhhHHHHHHHHHhcCC
Confidence 4556688899999999999999999999999999999 9999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILEL--DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
++.+++.|.|.-++..|++++|...|++|+.. .|.....+-|+|.|. .++++...|.+.+.+++ ++|+++
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca-l~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA-LKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH-hhcCCchhHHHHHHHHHHhCcCCC
Confidence 99999999999999999999999999999875 566778999999998 89999999999999999 998653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=130.64 Aligned_cols=136 Identities=17% Similarity=0.099 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY- 146 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 146 (229)
...+..+|..+...|++++|+..|+++++.+|.. ..++..+|.+ +...|++++|+..+++++..+|.+
T Consensus 180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 180 AHFYCELAQQALARGDLDAARALLKKALAADPQC-----VRASILLGDL------ALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHChhhH
Confidence 3456778888889999999999999999988887 8888889999 989999999999999999888876
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
..++..++.++...|++++|+..++++++.+|+.... ..++.++ .+.++..+|...+.+++ ..|++..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~-~~~g~~~~A~~~l~~~l~~~P~~~~ 317 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLL-EEQEGPEAAQALLREQLRRHPSLRG 317 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHH-HHhCCHHHHHHHHHHHHHhCcCHHH
Confidence 4567788889999999999999999999998877544 7777777 77788888888888888 7776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=124.29 Aligned_cols=134 Identities=16% Similarity=0.104 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+..+..++.+|.++...|++++|+..|+++++++|++ +.+|.++|.+ +...|++++|+..|++++++
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l 127 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIY------LTQAGNFDAAYEAFDSVLEL 127 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh
Confidence 345668899999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+|++..++.++|.++...|++++|++.|+++++++|+++.....+ .+. ...++..+|+..+.+..
T Consensus 128 ~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~-~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 128 DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLA-ESKLDPKQAKENLKQRY 192 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHH-HccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998422111 112 33445667777775544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=115.44 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=104.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHh-hccCC--hHHHHHH
Q psy13014 59 FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASY-LSLEK--PDQSILA 135 (229)
Q Consensus 59 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~-~~~~~--~~~A~~~ 135 (229)
......|+++..|..+|.++...|++++|+..|+++++++|++ +.++..+|.+ + ...|+ +++|++.
T Consensus 64 ~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-----~~~~~~lA~a------L~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 64 DKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-----AELYAALATV------LYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHhcCCCCcHHHHHH
Confidence 3446778899999999999999999999999999999999999 9999999987 6 56677 5999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 136 CSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 136 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
++++++.+|+++.+++++|.++...|++++|+.+|+++++++|.+..-...+
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999999999999999999999999999999999999998877655444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-16 Score=119.06 Aligned_cols=176 Identities=15% Similarity=0.085 Sum_probs=146.9
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
..++..+..++.+|..+... |+++.|...+++.+... ...+....+++.+|.++...|++++|+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~~~~~~-------------p~~~~~~~a~~~la~~~~~~~~~~~A~~~ 92 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDS-GDYTEAIKYFEALESRY-------------PFSPYAEQAQLDLAYAYYKSGDYAEAIAA 92 (235)
T ss_pred CcccCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-------------CCchhHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 45667788999999999999 99999999998877221 12344557889999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc--------CChHHHHHHHHHHHhcCCCcHHHH------------
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL--------EKPDQSILACSKAITLNPSYLKVY------------ 150 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~------------ 150 (229)
|+++++.+|++.. ...+++.+|.+ +... |++++|+..+++++..+|++..++
T Consensus 93 ~~~~l~~~p~~~~--~~~a~~~~g~~------~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~ 164 (235)
T TIGR03302 93 ADRFIRLHPNHPD--ADYAYYLRGLS------NYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNR 164 (235)
T ss_pred HHHHHHHCcCCCc--hHHHHHHHHHH------HHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHH
Confidence 9999999998721 13378889999 7765 889999999999999999986542
Q ss_pred -----HHHHHHHHhcccHHHHHHHHHHHHHhCCCc---HHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 151 -----QRRARLYQQSDKLDEALADYQKILELDPNN---RDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 151 -----~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..+|.++...|++.+|+..+++++...|+. +.++..++.++ ..+++..+|...+....
T Consensus 165 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~-~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 165 LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAY-LKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 367888999999999999999999997764 57999999999 88999999888665544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.1e-16 Score=123.46 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=150.0
Q ss_pred cccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc-CHHHHH
Q psy13014 10 LSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN-QWSESL 88 (229)
Q Consensus 10 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~ 88 (229)
+...|++..++-.+-.++... +..++|...+.+++ ...|.+..+|...|.++...+ .+++++
T Consensus 30 i~y~~~~~~a~~~~ra~l~~~-e~serAL~lt~~aI----------------~lnP~~ytaW~~R~~iL~~L~~~l~eeL 92 (320)
T PLN02789 30 IAYTPEFREAMDYFRAVYASD-ERSPRALDLTADVI----------------RLNPGNYTVWHFRRLCLEALDADLEEEL 92 (320)
T ss_pred eeeCHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH----------------HHCchhHHHHHHHHHHHHHcchhHHHHH
Confidence 445566666664443445556 77777877777776 678999999999999999998 689999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCCh--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP--DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
..+++++..+|++ ..+|.+++.+ +..+|+. ++++.+++++++.+|++..+|..++.++...|+++++
T Consensus 93 ~~~~~~i~~npkn-----yqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 93 DFAEDVAEDNPKN-----YQIWHHRRWL------AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HHHHHHHHHCCcc-----hHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH
Confidence 9999999999999 9999999999 7777764 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHhccCchHHH---hh----hhhccccccccc-ccCCCcccc
Q psy13014 167 LADYQKILELDPNNRDAYVATKVSPDLKL---KE----KNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 167 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~----~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
++.+.++++.+|.+..+|..++.+. .++ +. ..+++....+++ ++|+|...+
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl-~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW 220 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVI-TRSPLLGGLEAMRDSELKYTIDAILANPRNESPW 220 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHH-HhccccccccccHHHHHHHHHHHHHhCCCCcCHH
Confidence 9999999999999999999999887 443 22 234566666777 899776654
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.3e-16 Score=127.64 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=105.8
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-------HHHHHH-----------hhhhhhhHHHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQF-------IFHVLF-----------YLFCSQKLEQTAIS 70 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~-----------~~~~~~~~~~~~~~ 70 (229)
.+...|+.+..|+..|..|... |++.+|..+|.|+...-+. +.+... +....+.-+....-
T Consensus 304 LV~~yP~~a~sW~aVg~YYl~i-~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP 382 (611)
T KOG1173|consen 304 LVDLYPSKALSWFAVGCYYLMI-GKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP 382 (611)
T ss_pred HHHhCCCCCcchhhHHHHHHHh-cCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence 4455666666666666666555 6666666666555422111 111110 01111111222222
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-------
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------- 143 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------- 143 (229)
..-+|..|..++++.-|..+|.+|+.+.|.+ +.+...+|.+ .+..+.|.+|+.+|.+++..-
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D-----plv~~Elgvv------ay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPSD-----PLVLHELGVV------AYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCc-----chhhhhhhhe------eehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 3345555556666666666666666666665 6666666666 666666666666666665221
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+.....+.++|.++.+++++++|+..|++++.+.|.+...+..+|.++ ..++++..|+..|.+++ ++|+|
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy-~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIY-HLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHH-HHhcChHHHHHHHHHHHhcCCcc
Confidence 112334566666666666666666666666666666666666666666 55666666666666666 66654
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=124.44 Aligned_cols=157 Identities=24% Similarity=0.351 Sum_probs=132.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHH---------HHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 23 SCFILFILFSEIRTDCHQFERQVFYIQF---------IFHVLF-YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|-.+... ++++.++.+|.+.+.-.+. ..+.+. .....-..|..+......|+.+++.|+|..|+.+|.
T Consensus 304 ~g~a~~k~-~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 304 LGNAYTKR-EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred hhhhhhhH-HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 55567777 8888888888876643322 111111 001112345556777788999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
++|..+|++ +.+|.|+|.| |.+++.+..|+.+++++++++|+...+|.+.|.++..+.+|++|.+.|++
T Consensus 383 eAIkr~P~D-----a~lYsNRAac------~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 383 EAIKRDPED-----ARLYSNRAAC------YLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHhcCCch-----hHHHHHHHHH------HHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHhccCc
Q psy13014 173 ILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 173 al~~~p~~~~~~~~l~~~~ 191 (229)
+++.+|++.++...+.+|.
T Consensus 452 ale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred HHhcCchhHHHHHHHHHHH
Confidence 9999999999999998887
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-16 Score=122.64 Aligned_cols=191 Identities=15% Similarity=0.065 Sum_probs=106.8
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH---H-------------HHHHhh---hhhhhHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFI---F-------------HVLFYL---FCSQKLE 65 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~-------------~~~~~~---~~~~~~~ 65 (229)
.|++.++.++.++..+..++.+ ... +++++|...+++........ . .....+ ......+
T Consensus 66 ay~~l~~~~~~~~~~~~~l~~l-~~~-~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 66 AYEKLLASDKANPQDYERLIQL-LQD-GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred cccccccccccccccccccccc-ccc-ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 4666666666666665555544 455 66666666554432111000 0 000000 1112235
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
.++..+...|.++.+.|++++|+..|+++++.+|++ ..+...++.+ +...|+++++.+.+.......|.
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~-----~~~~~~l~~~------li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD-----PDARNALAWL------LIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT------HHHHHHHHHH------HCTTCHHHHHHHHHHHHHHH-HT
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHCCChHHHHHHHHHHHHHCcC
Confidence 678899999999999999999999999999999999 9999999999 99999999999999988888899
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++..+..+|.++..+|++++|+.+|++++..+|+|+.....++.++ ...|+..+|.+.+.+++
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l-~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL-EQAGRKDEALRLRRQAL 275 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH-T----------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999 89999999998888775
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.66 E-value=5e-15 Score=105.11 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|.+....+.+|..++..|++++|+..+++++..+|.+ +.++..+|.+ +...|++++|+..+++++.
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN-----SRYWLGLAAC------CQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 5678888899999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
.+|+++..++.+|.++...|++++|+..|+++++++|++.....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 99999999999999999999999999999999999999887553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.8e-16 Score=127.45 Aligned_cols=188 Identities=16% Similarity=0.128 Sum_probs=121.6
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
...++.+|-++..+...--++... |+..+-...-.+.+ ...|+.+..|+..|..|...|++.+
T Consensus 268 ~~lle~dpfh~~~~~~~ia~l~el-~~~n~Lf~lsh~LV----------------~~yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 268 EELLEKDPFHLPCLPLHIACLYEL-GKSNKLFLLSHKLV----------------DLYPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHh-cccchHHHHHHHHH----------------HhCCCCCcchhhHHHHHHHhcCcHH
Confidence 456788898887766554477777 66554433333333 2444555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhh------------hh---------------H-HhhccCChHHHHHHHHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALE------------KL---------------A-SYLSLEKPDQSILACSK 138 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~------------~~---------------~-~~~~~~~~~~A~~~~~~ 138 (229)
|..+|.++..++|.. ..+|...|..+. .. | +|...++++-|..+|..
T Consensus 331 ARry~SKat~lD~~f-----gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTF-----GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred HHHHHHHHhhcCccc-----cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 555555555555554 444444444400 00 0 06777788888888888
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CC---CcHHHHHHhccCchHHHhhhhhccccccccc-c
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL----DP---NNRDAYVATKVSPDLKLKEKNGATKLSPDVF-L 210 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~ 210 (229)
|+.+.|.++-.+..+|.+.+..+.|.+|+.+|++++.. .+ .....+.++|.++ .+.+.+.+|+..+++++ +
T Consensus 406 A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~-Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY-RKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH-HHHhhHHHHHHHHHHHHHc
Confidence 88888888888888888888888888888888888732 22 2445678888888 78888888888888888 8
Q ss_pred cCCCccc
Q psy13014 211 HPGQPQI 217 (229)
Q Consensus 211 ~p~~~~~ 217 (229)
.|.++..
T Consensus 485 ~~k~~~~ 491 (611)
T KOG1173|consen 485 SPKDAST 491 (611)
T ss_pred CCCchhH
Confidence 8866553
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-15 Score=120.86 Aligned_cols=115 Identities=25% Similarity=0.361 Sum_probs=109.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
+...|..++..|+|++|+.+|.+++.++|.+ +.++.++|.+ +..+|++++|+..+++++.++|+++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~-----~~a~~~~a~~------~~~~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQA------NIKLGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 5678999999999999999999999999999 9999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
+++|.++..+|++++|+..|+++++++|+++.+...++.|. .++..
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~-~kl~~ 119 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECD-EKIAE 119 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHh
Confidence 99999999999999999999999999999999999998886 55533
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=103.69 Aligned_cols=107 Identities=10% Similarity=0.050 Sum_probs=101.7
Q ss_pred hH-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 63 KL-EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 63 ~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
.. ++.-...+.+|..+++.|++++|...|+-++..+|.+ ...|+++|.| +..+|+|++||..|.+++.
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~-----~~y~~gLG~~------~Q~~g~~~~AI~aY~~A~~ 97 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS-----FDYWFRLGEC------CQAQKHWGEAIYAYGRAAQ 97 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHh
Confidence 44 6778889999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
++|+++.++++.|.|+...|+.+.|.+.|+.++..-.+.
T Consensus 98 L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 98 IKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999887443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=112.55 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=115.1
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH-Hh
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY-QQ 159 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~ 159 (229)
.++.++++..++++++.+|++ ...|..+|.+ +...|++++|+..|++++.++|+++.++..+|.++ ..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-----~~~w~~Lg~~------~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~ 120 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-----SEQWALLGEY------YLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQ 120 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 677899999999999999999 9999999999 99999999999999999999999999999999985 67
Q ss_pred ccc--HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 160 SDK--LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 160 ~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
.|+ +++|...++++++.+|++..++.++|.++ .+.+++.+|+..|.+++ +.|.+
T Consensus 121 ~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~-~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALDANEVTALMLLASDA-FMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC
Confidence 787 59999999999999999999999999999 89999999999999999 77743
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-16 Score=123.28 Aligned_cols=193 Identities=18% Similarity=0.179 Sum_probs=113.1
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH----h------------hhhhhhHHHHHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF----Y------------LFCSQKLEQTAISLKDEGN 76 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~g~ 76 (229)
.|+++..+..+|.+.... ++++.|...+++.+..-+....... . ....-....++..+.....
T Consensus 40 ~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~ 118 (280)
T PF13429_consen 40 PPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQ 118 (280)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHH
Confidence 488999999999999888 9999999999877644322111111 0 0000012345566777888
Q ss_pred HHHHccCHHHHHHHHHHHHHhC--CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 77 ALFRLNQWSESLAKYNEALRSC--PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
++...++++++...++++.... +.+ +.+|..+|.+ +.+.|+.++|+.+++++++.+|+++.+...++
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~ 187 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPAAPDS-----ARFWLALAEI------YEQLGDPDKALRDYRKALELDPDDPDARNALA 187 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T---T------HHHHHHHHHH------HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHhccCCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 8999999999999999988655 455 8899999999 99999999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 155 RLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
.++...|+++++...+.......|+++..+..++.++ ..+++..+|+..+.+++ .+|+|+.+.
T Consensus 188 ~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~-~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 188 WLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY-LQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH-HHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh-ccccccccccccccccccccccccccc
Confidence 9999999999999999999998899999999999999 89999999999999999 899877543
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-15 Score=117.77 Aligned_cols=159 Identities=21% Similarity=0.354 Sum_probs=137.0
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
.+++++++.++++..|.++... ++.+.+...|.+.+..-+--...- ..-..+.....+...|+-.++.|++.+|.
T Consensus 195 ilkld~~n~~al~vrg~~~yy~-~~~~ka~~hf~qal~ldpdh~~sk----~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYN-DNADKAINHFQQALRLDPDHQKSK----SASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHhcccchhHHHHhcccccccc-cchHHHHHHHhhhhccChhhhhHH----hHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 6789999999999999999999 999999999988874322111100 01133566678889999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
++|..+|.++|++ ....+.+|.++|.+ ...+|+..+|+..++.+++++|...+++...|.|+..++++++|++
T Consensus 270 E~Yteal~idP~n-~~~naklY~nra~v------~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 270 ECYTEALNIDPSN-KKTNAKLYGNRALV------NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred HHHHHhhcCCccc-cchhHHHHHHhHhh------hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 33457889999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q psy13014 169 DYQKILELDPN 179 (229)
Q Consensus 169 ~~~~al~~~p~ 179 (229)
+|+++++...+
T Consensus 343 d~~~a~q~~~s 353 (486)
T KOG0550|consen 343 DYEKAMQLEKD 353 (486)
T ss_pred HHHHHHhhccc
Confidence 99999998776
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-15 Score=117.27 Aligned_cols=139 Identities=26% Similarity=0.383 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc----------hhhHHHHHhHhhhhhhhHHhhccCChHHHH
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS----------VSRAVFYANRSAALEKLASYLSLEKPDQSI 133 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~ 133 (229)
.-..+......|+.+++.|+|..|...|++++..-+.... ..+..++.|++.| +.++++|..|+
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c------~lKl~~~~~Ai 277 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAAC------YLKLKEYKEAI 277 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHH------HHhhhhHHHHH
Confidence 3455667788999999999999999999999887442211 2356789999999 99999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh-hhhccccccccc
Q psy13014 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE-KNGATKLSPDVF 209 (229)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~~a~~~~~~~~ 209 (229)
..++++|.++|+|++++|+.|.++..+|+|+.|+..|+++++++|+|..+...+..|. ++.++ ..+..+.|.+++
T Consensus 278 ~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~-~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 278 ESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK-QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999888 66666 444577788877
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=108.79 Aligned_cols=170 Identities=13% Similarity=0.086 Sum_probs=150.7
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSES 87 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 87 (229)
+...++|++..+ ..++..+... |+-+.+..+..+.. ...+.+...+..+|...+..|+|..|
T Consensus 58 ~~~~~~p~d~~i-~~~a~a~~~~-G~a~~~l~~~~~~~----------------~~~~~d~~ll~~~gk~~~~~g~~~~A 119 (257)
T COG5010 58 AAVLRNPEDLSI-AKLATALYLR-GDADSSLAVLQKSA----------------IAYPKDRELLAAQGKNQIRNGNFGEA 119 (257)
T ss_pred HHHhcCcchHHH-HHHHHHHHhc-ccccchHHHHhhhh----------------ccCcccHHHHHHHHHHHHHhcchHHH
Confidence 456788888888 7777777777 88777777666654 46677777787899999999999999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHH
Q psy13014 88 LAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEAL 167 (229)
Q Consensus 88 ~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 167 (229)
+..+.++..+.|++ +.+|..+|.+ |.+.|+++.|...|.+++++.|+++.+..|+|..+.-.|+++.|.
T Consensus 120 ~~~~rkA~~l~p~d-----~~~~~~lgaa------ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 120 VSVLRKAARLAPTD-----WEAWNLLGAA------LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HHHHHHHhccCCCC-----hhhhhHHHHH------HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 99999999999999 9999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccc
Q psy13014 168 ADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPD 207 (229)
Q Consensus 168 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 207 (229)
..+..+....+.+..+..+++.+. ...+++.+|...-..
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~-~~~g~~~~A~~i~~~ 227 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVV-GLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHH-hhcCChHHHHhhccc
Confidence 999999999999999999999988 777887776654443
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-14 Score=117.57 Aligned_cols=195 Identities=19% Similarity=0.213 Sum_probs=157.2
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
..|.++++++ ++...+...+-+++.. |.+..+....++++....-... ....-+..+..+|..+..+++
T Consensus 245 q~y~~a~el~-~~it~~~n~aA~~~e~-~~~~~c~~~c~~a~E~gre~ra---------d~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 245 QHYAKALELA-TDITYLNNIAAVYLER-GKYAECIELCEKAVEVGRELRA---------DYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred HHHHHHHhHh-hhhHHHHHHHHHHHhc-cHHHHhhcchHHHHHHhHHHHH---------HHHHHHHHHHHhhhhhhhHHh
Confidence 3577888888 8888888888999999 9999888888776643321111 111234455568889999999
Q ss_pred HHHHHHHHHHHHHhCCC--CCc-------------------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 84 WSESLAKYNEALRSCPR--SCS-------------------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~--~~~-------------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
++.|+.+|.+++..... ..+ ...+.--...|.. +++.|+|..|+.+|.++|..
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne------~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNE------AFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHH------HHhccCHHHHHHHHHHHHhc
Confidence 99999999999886543 110 1112223334555 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+|+++..|.++|.||.++|.+..|+.+.+++++++|++..+|..-|.++ .-++++.+|++.|.+.+ .+|++-.
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al-~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAAL-RAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCchhHH
Confidence 9999999999999999999999999999999999999999999999998 99999999999999999 9986543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=130.60 Aligned_cols=188 Identities=15% Similarity=0.088 Sum_probs=149.2
Q ss_pred chhhcccCCchH-HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH----HHHHHHHHHHHHH
Q psy13014 6 YQQELSKNPSFL-YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQT----AISLKDEGNALFR 80 (229)
Q Consensus 6 ~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~ 80 (229)
|+++++.+|..+ .+...+|.++... |++++|...|++++ ...|.. ......++..+..
T Consensus 260 ~~~ll~~~~~~P~~a~~~la~~yl~~-g~~e~A~~~l~~~l----------------~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 260 YQRLKAEGQIIPPWAQRWVASAYLKL-HQPEKAQSILTELF----------------YHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHh----------------hcCCCCCCCChHHHHHHHHHHHh
Confidence 555555543222 1333346667777 77777777776654 222222 3456677778899
Q ss_pred ccCHHHHHHHHHHHHHhCCCCC----------chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 81 LNQWSESLAKYNEALRSCPRSC----------SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
.+++++|+..++++....|... ......++..+|.+ +...|++++|++.+++++...|+++.++
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~------l~~~g~~~eA~~~l~~al~~~P~n~~l~ 396 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV------AKYSNDLPQAEMRARELAYNAPGNQGLR 396 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999877321 00124577889999 9999999999999999999999999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
..+|.++...|++++|+..+++++.++|++..++..++.+. ...+++.+|...+.+++ ..|++..+
T Consensus 397 ~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a-l~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 397 IDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA-LDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999987 88999999999999999 99976544
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.5e-16 Score=119.47 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=156.9
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|.+.+...|.+...+...+.++-.+ ++++++..+|+..+ +..+.+.++...+|..|+-.++.+
T Consensus 279 ~~~gld~fP~~VT~l~g~ARi~eam-~~~~~a~~lYk~vl----------------k~~~~nvEaiAcia~~yfY~~~PE 341 (478)
T KOG1129|consen 279 IGEGLDSFPFDVTYLLGQARIHEAM-EQQEDALQLYKLVL----------------KLHPINVEAIACIAVGYFYDNNPE 341 (478)
T ss_pred HhhhhhcCCchhhhhhhhHHHHHHH-HhHHHHHHHHHHHH----------------hcCCccceeeeeeeeccccCCChH
Confidence 4556677777777777777777777 77777777776665 566777777777777888888888
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC--C-cHHHHHHHHHHHHhccc
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--S-YLKVYQRRARLYQQSDK 162 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~-~~~~~~~la~~~~~~~~ 162 (229)
-|+.+|.+.+++.-.+ ++++.|+|.| .+..++++-++..|.+|+..-. + -.++|+++|.+....|+
T Consensus 342 ~AlryYRRiLqmG~~s-----peLf~NigLC------C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 342 MALRYYRRILQMGAQS-----PELFCNIGLC------CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred HHHHHHHHHHHhcCCC-----hHHHhhHHHH------HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 8888888888887777 9999999999 9999999999999999988643 3 36789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccccCCCCc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQHNPETI 224 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~~~~~~ 224 (229)
+..|..+|+-++..||++.+++.+++.+. -+.++..+|...+..+- +.|+-++...|....
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~-~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLA-ARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHH-hhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 99999999999999999999999999887 78889999998888888 888777766665443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-14 Score=124.03 Aligned_cols=146 Identities=10% Similarity=-0.012 Sum_probs=131.2
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
..-|.+..+++.+|.+.... |.+++|...++.++ +..|++..++..++.++.+.+++++|+..
T Consensus 80 ~~~~~~~~~~~~La~i~~~~-g~~~ea~~~l~~~~----------------~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAA-HRSDEGLAVWRGIH----------------QRFPDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred HhccccHHHHHHHHHHHHHc-CCcHHHHHHHHHHH----------------hhCCCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 45678889999999999999 99999999998887 67789999999999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+++++..+|++ +..++.+|.+ +..+|++++|++.|++++..+|+++.++..+|.++...|+.++|+..|
T Consensus 143 ~~~~l~~~p~~-----~~~~~~~a~~------l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 143 IELYFSGGSSS-----AREILLEAKS------WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHhhcCCCC-----HHHHHHHHHH------HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999 9999999999 999999999999999999989999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHH
Q psy13014 171 QKILELDPNNRDAY 184 (229)
Q Consensus 171 ~~al~~~p~~~~~~ 184 (229)
++++....+-...+
T Consensus 212 ~~a~~~~~~~~~~~ 225 (694)
T PRK15179 212 QAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHhhCcchHHH
Confidence 99998876655443
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-14 Score=111.03 Aligned_cols=192 Identities=13% Similarity=0.202 Sum_probs=164.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|-.+++.||++..++|..|.+|+.+ |+-..|..-+.+.+ ...|+...+....|.++.++|++
T Consensus 60 ~yHaAve~dp~~Y~aifrRaT~yLAm-Gksk~al~Dl~rVl----------------elKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 60 HYHAAVEGDPNNYQAIFRRATVYLAM-GKSKAALQDLSRVL----------------ELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHcCCchhHHHHHHHHHHHhhh-cCCccchhhHHHHH----------------hcCccHHHHHHHhchhhhhcccH
Confidence 47789999999999999999999999 99999999888877 67788888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhh------hhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAA------LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ 158 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 158 (229)
++|...|+.++..+|++... ..+...++.+ ..-+-+++..|++..||+.....+++.|-++..+...+.||.
T Consensus 123 e~A~~DF~~vl~~~~s~~~~--~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLV--LEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHHHHHHHhcCCCcchh--HHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 99999999999999976432 2222222222 111223778899999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 159 QSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
..|+...||..++.+-++..++.+.++.++.++ ..+++...++...+.-+ ++|++-.
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~-Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLL-YTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHH-HhhhhHHHHHHHHHHHHccCcchhh
Confidence 999999999999999999999999999999998 88999999999998888 9986543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.6e-14 Score=100.16 Aligned_cols=118 Identities=15% Similarity=0.139 Sum_probs=110.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
-|+++++.+|++....+.+|..+... |++++|...+++.+ ...|.++.++..+|.++...|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~----------------~~~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQ-GRYDEALKLFQLLA----------------AYDPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHc-ccHHHHHHHHHHHH----------------HhCCCcHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999 99999999998877 45688899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
++|+..+++++..+|.+ +..++.+|.+ +...|++++|+..++++++.+|++....
T Consensus 68 ~~A~~~~~~~~~~~p~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 68 EEAIDAYALAAALDPDD-----PRPYFHAAEC------LLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHHHhcCCCC-----hHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999 9999999999 9999999999999999999999887643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-14 Score=108.27 Aligned_cols=154 Identities=12% Similarity=0.033 Sum_probs=124.7
Q ss_pred cchhhcccCCchH---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc
Q psy13014 5 PYQQELSKNPSFL---YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL 81 (229)
Q Consensus 5 ~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (229)
.|++++..+|+++ .+++.+|.++... |++++|...+++.+... ...+....+++.+|.+++..
T Consensus 55 ~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~~~-------------p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 55 YFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIRLH-------------PNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHC-------------cCCCchHHHHHHHHHHHHHh
Confidence 4677889999876 5789999999999 99999999999988221 12233345789999999886
Q ss_pred --------cCHHHHHHHHHHHHHhCCCCCchhhH------------HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 82 --------NQWSESLAKYNEALRSCPRSCSVSRA------------VFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 82 --------~~~~~A~~~~~~al~~~p~~~~~~~~------------~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
|++++|+..|++++..+|++...... .....+|.+ ++..|++.+|+..+.+++.
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 121 IDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARF------YLKRGAYVAAINRFETVVE 194 (235)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHcCChHHHHHHHHHHHH
Confidence 89999999999999999987321111 112356777 9999999999999999999
Q ss_pred cCCCc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy13014 142 LNPSY---LKVYQRRARLYQQSDKLDEALADYQKILELDP 178 (229)
Q Consensus 142 ~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 178 (229)
..|++ +.+++.+|.++..+|++++|+.+++......|
T Consensus 195 ~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 195 NYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 97764 58999999999999999999999887766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.7e-14 Score=122.43 Aligned_cols=136 Identities=13% Similarity=0.053 Sum_probs=131.3
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...++++.+++.+|.+..+.|.+++|...++.++.+.|++ ..++.+++.+ +.+++++++|+..+++++.
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~-----~~a~~~~a~~------L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS-----SEAFILMLRG------VKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc-----HHHHHHHHHH------HHHhccHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+|+++.+++.+|.++..+|++++|+..|++++..+|+++.++..+|.++ ...++.++|...|.+++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l-~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSL-TRRGALWRARDVLQAGL 215 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 88999999999998887
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=123.79 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=147.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
..|-++.-..-...+.... |+.++++..+.++. ...+..+.++..+|.++...|++++|+..|
T Consensus 10 ~~~~~~~~~~d~~~ia~~~-g~~~~A~~~~~~~~----------------~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~ 72 (765)
T PRK10049 10 KSALSNNQIADWLQIALWA-GQDAEVITVYNRYR----------------VHMQLPARGYAAVAVAYRNLKQWQNSLTLW 72 (765)
T ss_pred ccCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4455555444455566677 99999998887776 335667778999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q psy13014 92 NEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 92 ~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
++++..+|.+ +.++..+|.+ +...|++++|+..++++++.+|+++. +..+|.++...|++++|+..++
T Consensus 73 ~~al~~~P~~-----~~a~~~la~~------l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 73 QKALSLEPQN-----DDYQRGLILT------LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred HHHHHhCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999 9999999999 99999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccccccC
Q psy13014 172 KILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFLHP 212 (229)
Q Consensus 172 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~p 212 (229)
++++++|+++.++..++.++ ...+...+|++.+.++...|
T Consensus 141 ~al~~~P~~~~~~~~la~~l-~~~~~~e~Al~~l~~~~~~p 180 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQAL-RNNRLSAPALGAIDDANLTP 180 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHH-HHCCChHHHHHHHHhCCCCH
Confidence 99999999999999999887 66666677777766555443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.6e-14 Score=124.17 Aligned_cols=179 Identities=14% Similarity=0.081 Sum_probs=141.2
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
..-..|+.+...+..+++.+.. |++..|...|.+++ ...|..+.....+..++...|+.++|+
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~-Gd~~~Al~~L~qaL----------------~~~P~~~~av~dll~l~~~~G~~~~A~ 88 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARA-GDTAPVLDYLQEES----------------KAGPLQSGQVDDWLQIAGWAGRDQEVI 88 (822)
T ss_pred ccccCccchhHHHHHHHHHHhC-CCHHHHHHHHHHHH----------------hhCccchhhHHHHHHHHHHcCCcHHHH
Confidence 3456899999999999999999 99999999999888 566666434447777888889999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
.++++++...|.. ......+|.+ +..+|++++|++.|+++++.+|+++.++..++.++...++.++|+.
T Consensus 89 ~~~eka~~p~n~~-----~~~llalA~l------y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 89 DVYERYQSSMNIS-----SRGLASAARA------YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred HHHHHhccCCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 9999988333333 4455555778 8888999999999999999999998888888888889999999999
Q ss_pred HHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 169 DYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 169 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
.+++++..+|.+... ..++.++ ...++..+|++.+++++ .+|++.++
T Consensus 158 ~l~~l~~~dp~~~~~-l~layL~-~~~~~~~~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 158 QATELAERDPTVQNY-MTLSYLN-RATDRNYDALQASSEAVRLAPTSEEV 205 (822)
T ss_pred HHHHhcccCcchHHH-HHHHHHH-HhcchHHHHHHHHHHHHHhCCCCHHH
Confidence 999999888886655 4555555 34556666888888888 88876654
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-13 Score=99.89 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=143.6
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
|+++.....|++..+.-+.|..+-.. |.+++|+++|+..+ ..+|.+..++...--+...+|+.
T Consensus 74 C~~~L~~~fp~S~RV~~lkam~lEa~-~~~~~A~e~y~~lL----------------~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 74 CINQLRDRFPGSKRVGKLKAMLLEAT-GNYKEAIEYYESLL----------------EDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHh-hchhhHHHHHHHHh----------------ccCcchhHHHHHHHHHHHHcCCc
Confidence 45566667799999999999999888 99999999999888 67788888888888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc---
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD--- 161 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--- 161 (229)
.+|++.+...++.++.+ .++|..++.+ |+..|+|++|.-++++++-++|.++..+.++|.+++.+|
T Consensus 137 l~aIk~ln~YL~~F~~D-----~EAW~eLaei------Y~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMND-----QEAWHELAEI------YLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHHHHHHHhcCc-----HHHHHHHHHH------HHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999 9999999999 999999999999999999999999999999999998776
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+++-|.++|.++++++|.+..+++.+..+.
T Consensus 206 N~~~arkyy~~alkl~~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 206 NLELARKYYERALKLNPKNLRALFGIYLCG 235 (289)
T ss_pred HHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence 577899999999999998888888887766
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=120.68 Aligned_cols=167 Identities=11% Similarity=0.184 Sum_probs=83.2
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
.+.|++++++||++..++..+|.+-... .+- ..+.+++..+. ... ...+.+|.++..++.-++..|
T Consensus 219 ~~a~~ralqLdp~~v~alv~L~~~~l~~-~d~----~s~~~~~~ll~---~ay------~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 219 LLAFERALQLDPTCVSALVALGEVDLNF-NDS----DSYKKGVQLLQ---RAY------KENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHc-cch----HHHHHHHHHHH---HHH------hhcCCCcHHHHHHHHHHhhcc
Confidence 5678889999998888888888776655 332 11222221111 111 233444444444444444455
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHhcc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY-LKVYQRRARLYQQSD 161 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~ 161 (229)
+|..+......++...... ...+..++++|.+ |..+|+|++|..+|.+++..+|++ .-.++.+|.++...|
T Consensus 285 dy~~v~~la~~ai~~t~~~--~~~aes~Y~~gRs------~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~ 356 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENK--SIKAESFYQLGRS------YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG 356 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHH------HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc
Confidence 5554444444444433111 1123344444544 444555555555555554444444 344444455555555
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+++.|+.+|++++...|++.+....+|.++
T Consensus 357 dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 555555555555555555544444444444
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-13 Score=116.45 Aligned_cols=163 Identities=15% Similarity=0.180 Sum_probs=147.2
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
++++...+|.+|.++..++.-++.. |++..+....+.++... ...+..+..++.+|..++.+|+|+
T Consensus 259 l~~ay~~n~~nP~~l~~LAn~fyfK-~dy~~v~~la~~ai~~t-------------~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 259 LQRAYKENNENPVALNHLANHFYFK-KDYERVWHLAEHAIKNT-------------ENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HHHHHhhcCCCcHHHHHHHHHHhhc-ccHHHHHHHHHHHHHhh-------------hhhHHHHHHHHHHHHHHHhhccHH
Confidence 4568889999999999999999999 99999999887776322 245667788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc----
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD---- 161 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---- 161 (229)
+|..+|.+++..+|++. .-.++.+|.. +...|+++.|+.+|+++++..|++.++...+|.+|...+
T Consensus 325 kA~~yY~~s~k~~~d~~----~l~~~GlgQm------~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNF----VLPLVGLGQM------YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHHHHHHHHccCCCCc----cccccchhHH------HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhH
Confidence 99999999999999872 6678999999 999999999999999999999999999999999999886
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
..++|...+.+++...|.+.++|..++.++.
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 6789999999999999999999999999973
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=90.03 Aligned_cols=112 Identities=14% Similarity=0.161 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY- 146 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 146 (229)
+.+++..|..+...|++++|+..|.+++..+|++.. .+.+++.+|.+ ++..|++++|+..|++++...|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY--APNAHYWLGEA------YYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHHHHHHHH------HHhhccHHHHHHHHHHHHHHCCCCC
Confidence 357889999999999999999999999999886511 25688999999 999999999999999999998885
Q ss_pred --HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 147 --LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 147 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
+.+++.+|.++...|++++|+..+.+++...|++..+....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 67899999999999999999999999999999988766544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=110.54 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=149.4
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|....+.+..+.++... |++.+|...--..+ +.++.+..+++..|.+++...+.+.|+.+|++
T Consensus 166 pac~~a~~lka~cl~~~-~~~~~a~~ea~~il----------------kld~~n~~al~vrg~~~yy~~~~~ka~~hf~q 228 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFL-GDYDEAQSEAIDIL----------------KLDATNAEALYVRGLCLYYNDNADKAINHFQQ 228 (486)
T ss_pred chhhHHHHhhhhhhhhc-ccchhHHHHHHHHH----------------hcccchhHHHHhcccccccccchHHHHHHHhh
Confidence 55567788888888888 99998887554444 57789999999999999999999999999999
Q ss_pred HHHhCCCCCch-------hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhccc
Q psy13014 94 ALRSCPRSCSV-------SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY----LKVYQRRARLYQQSDK 162 (229)
Q Consensus 94 al~~~p~~~~~-------~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~ 162 (229)
++.++|++.+. .....+...|.- .++.|+|..|.+.|..+|.++|++ +..|.++|.+...+|+
T Consensus 229 al~ldpdh~~sk~~~~~~k~le~~k~~gN~------~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550|consen 229 ALRLDPDHQKSKSASMMPKKLEVKKERGND------AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred hhccChhhhhHHhHhhhHHHHHHHHhhhhh------HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence 99999987431 123344555555 899999999999999999999987 4569999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..+|+.....+++++|....++...+.|+ .-++++++|++++++++
T Consensus 303 l~eaisdc~~Al~iD~syikall~ra~c~-l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 303 LREAISDCNEALKIDSSYIKALLRRANCH-LALEKWEEAVEDYEKAM 348 (486)
T ss_pred chhhhhhhhhhhhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998 89999999999999887
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.3e-14 Score=108.77 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=147.4
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|..+++.+|.+.++....|.-++.- ++.+.|..+|.+.+ .....+++.+.++|.|++-.++++
T Consensus 313 Yk~vlk~~~~nvEaiAcia~~yfY~-~~PE~AlryYRRiL----------------qmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 313 YKLVLKLHPINVEAIACIAVGYFYD-NNPEMALRYYRRIL----------------QMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHhcCCccceeeeeeeeccccC-CChHHHHHHHHHHH----------------HhcCCChHHHhhHHHHHHhhcchh
Confidence 6778999999999999999999998 99999999998887 455678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
-++..|++++....+. ...+++|+|+|.+ ....|++.-|..+|+-++..+|++..++.++|..-...|+.++
T Consensus 376 ~~L~sf~RAlstat~~--~~aaDvWYNlg~v------aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~ 447 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQP--GQAADVWYNLGFV------AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG 447 (478)
T ss_pred hhHHHHHHHHhhccCc--chhhhhhhcccee------EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH
Confidence 9999999999985432 1138999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 166 ALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 166 A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|...+..+-+..|+..+...+++.+.
T Consensus 448 Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 448 ARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHHHHHHhhhhCccccccccceeEEe
Confidence 99999999999999999998888764
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=111.98 Aligned_cols=189 Identities=15% Similarity=0.105 Sum_probs=149.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.++++++++|+|+.+.|.++.-+... ++++.|..+..+++.. .....+.+|..++.++...+++
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~-R~l~sAl~~~~eaL~l---------------~~~~~~~~whLLALvlSa~kr~ 529 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQ-RQLTSALDYAREALAL---------------NRGDSAKAWHLLALVLSAQKRL 529 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHH-HhHHHHHHHHHHHHHh---------------cCCccHHHHHHHHHHHhhhhhh
Confidence 57889999999999999999999999 9999999988887743 1234444555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCc-------------------------------------------------------------
Q psy13014 85 SESLAKYNEALRSCPRSCS------------------------------------------------------------- 103 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~------------------------------------------------------------- 103 (229)
.+|+...+.++.-.|+|..
T Consensus 530 ~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a 609 (799)
T KOG4162|consen 530 KEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDA 609 (799)
T ss_pred HHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccccc
Confidence 5555555555444444100
Q ss_pred -----------------------------------------------------------------------hhhHHHHHh
Q psy13014 104 -----------------------------------------------------------------------VSRAVFYAN 112 (229)
Q Consensus 104 -----------------------------------------------------------------------~~~~~~~~~ 112 (229)
...+..|+.
T Consensus 610 ~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~ 689 (799)
T KOG4162|consen 610 ISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYL 689 (799)
T ss_pred chhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHH
Confidence 001455666
Q ss_pred HhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH--HHHHHHHhCCCcHHHHHHhccC
Q psy13014 113 RSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA--DYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 113 lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~ 190 (229)
.|.+ +...|+.++|.+.|..|+.++|+++....-+|.++...|+..-|.. .+..++++||.++++|+.+|.+
T Consensus 690 ~G~~------~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 690 RGLL------LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred hhHH------HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 6667 8888999999999999999999999999999999999998877777 9999999999999999999999
Q ss_pred chHHHhhhhhccccccccc-ccCCCcc
Q psy13014 191 PDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
. .+.|+...|...|..++ +++.++-
T Consensus 764 ~-k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 764 F-KKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred H-HHccchHHHHHHHHHHHhhccCCCc
Confidence 9 89999999999999998 8876543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.5e-13 Score=83.76 Aligned_cols=66 Identities=29% Similarity=0.445 Sum_probs=64.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCC
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD-KLDEALADYQKILELDP 178 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 178 (229)
+..|..+|.+ ++..|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~------~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQI------YFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHH------HHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 8899999999 999999999999999999999999999999999999999 89999999999999998
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=90.85 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=100.8
Q ss_pred cccC-CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 10 LSKN-PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 10 l~~~-p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
..+. ++.....|.+|..+... |++++|...|+-.. ..+|.++..|+.+|.++-.+|+|.+|+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~-G~l~~A~~~f~~L~----------------~~Dp~~~~y~~gLG~~~Q~~g~~~~AI 89 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEV-KEFAGAARLFQLLT----------------IYDAWSFDYWFRLGECCQAQKHWGEAI 89 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcccHHHHHHHHHHHHHHhhHHHHH
Confidence 4567 88999999999999999 99999999997776 578999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..|.+++.++|++ +..+++.|.| ++..|+.+.|.+.|+.++.....
T Consensus 90 ~aY~~A~~L~~dd-----p~~~~~ag~c------~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 90 YAYGRAAQIKIDA-----PQAPWAAAEC------YLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHhcCCCC-----chHHHHHHHH------HHHcCCHHHHHHHHHHHHHHhcc
Confidence 9999999999999 9999999999 99999999999999999998633
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-12 Score=105.52 Aligned_cols=190 Identities=8% Similarity=-0.046 Sum_probs=150.7
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH----HHHH-----HHH---H----------H----hhh
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFY----IQFI-----FHV---L----------F----YLF 59 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~-----~~~---~----------~----~~~ 59 (229)
+++.++..|+++.++...+.++... |+++.+...+.+.... -..+ ... + . +..
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~-~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRS-GAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5667889999999999999999999 9999998888766522 0000 000 0 0 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHH--HHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 60 CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVF--YANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 60 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~--~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
.....++++..+...|..+...|++++|...++++++..|++ ... ....... ....++.+.+++.++
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~-----~~~~~~~l~~~~------~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD-----RAISLPLCLPIP------RLKPEDNEKLEKLIE 323 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-----ccchhHHHHHhh------hcCCCChHHHHHHHH
Confidence 112223578899999999999999999999999999999987 432 1223333 445688999999999
Q ss_pred HHHhcCCCcH--HHHHHHHHHHHhcccHHHHHHHHH--HHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 138 KAITLNPSYL--KVYQRRARLYQQSDKLDEALADYQ--KILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 138 ~al~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++++..|+++ ..+..+|.++...|++++|.++|+ .+++.+|++.. +..++.++ .+.++..+|.+.|.+.+
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll-~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAF-DQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 9999999999 888999999999999999999999 68889998776 45999998 88999999998888864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=83.76 Aligned_cols=99 Identities=37% Similarity=0.564 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
+++.+|..+...|++++|+..+++++...|.+ ..++..+|.+ +...+++++|+..+++++...|.+..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-----ADAYYNLAAA------YYKLGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-----HHHHHHHHHH------HHHHHHHHHHHHHHHHHHhCCCcchhH
Confidence 47789999999999999999999999999988 8899999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
+..+|.++...|++++|...+.+++..+|.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999998874
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.7e-12 Score=92.53 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...+..+..++.+|..+...|++++|+.+|++++...|+.. ....++.++|.+ +..+|++++|+.++.+++.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN--DRSYILYNMGII------YASNGEHDKALEYYHQALE 100 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999877541 125789999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhccc--------------HHHHHHHHHHHHHhCCCcH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDK--------------LDEALADYQKILELDPNNR 181 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~al~~~p~~~ 181 (229)
..|++..++..+|.++...|+ +++|.+.+++++..+|++.
T Consensus 101 ~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 101 LNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred hCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 999999999999999999887 6788888888889899873
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=105.02 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=132.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
.||+++.+++.+|.++... |+...+...+.+...... ............|..+...|++++|...+
T Consensus 1 ~dp~~~~a~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~ 66 (355)
T cd05804 1 ADPDFALGHAAAALLLLLG-GERPAAAAKAAAAAQALA-------------ARATERERAHVEALSAWIAGDLPKALALL 66 (355)
T ss_pred CCCccHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHhc-------------cCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3799999999999888887 887777666655442111 11233445666777888888888888888
Q ss_pred HHHHHhCCCCCch--------------------------------hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 92 NEALRSCPRSCSV--------------------------------SRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 92 ~~al~~~p~~~~~--------------------------------~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
++++..+|.+... ........+|.+ +...|++++|+..++++
T Consensus 67 ~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~------~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 67 EQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG------LEEAGQYDRAEEAARRA 140 (355)
T ss_pred HHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHH
Confidence 8888877766100 001222333444 77889999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH----HHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD----AYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
++++|+++.++..+|.++...|++++|+..+.+++...|.++. .+..++.++ ...++..+|+..+.++. ..|
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~-~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY-LERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH-HHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999998875432 345678777 78888999999998876 444
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=100.47 Aligned_cols=125 Identities=17% Similarity=0.203 Sum_probs=106.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS 103 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 103 (229)
|--+... ++|.+|+..|.+++ ...|.++..|.+.+.+|.++|+++.|++..+.++.++|.+
T Consensus 88 GN~~m~~-~~Y~eAv~kY~~AI----------------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y-- 148 (304)
T KOG0553|consen 88 GNKLMKN-KDYQEAVDKYTEAI----------------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY-- 148 (304)
T ss_pred HHHHHHh-hhHHHHHHHHHHHH----------------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH--
Confidence 4444455 66666666666666 7889999999999999999999999999999999999999
Q ss_pred hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH---HHHHHHHHHHHh
Q psy13014 104 VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD---EALADYQKILEL 176 (229)
Q Consensus 104 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~---~A~~~~~~al~~ 176 (229)
..+|..+|.+ |..+|++++|++.|+++|+++|++....-++..+-.+++... .+...++.+-.+
T Consensus 149 ---skay~RLG~A------~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 149 ---SKAYGRLGLA------YLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred ---HHHHHHHHHH------HHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 9999999999 999999999999999999999999999999988888877665 455555544443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=102.17 Aligned_cols=188 Identities=10% Similarity=0.033 Sum_probs=152.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH------------H----HHHHHH----------hh
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ------------F----IFHVLF----------YL 58 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------------~----~~~~~~----------~~ 58 (229)
.+++.++.+|+++.++..++.++... |+++++...+.+...... . ...... |.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~-gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRT-GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35678889999999999999999999 999999977765542100 0 000000 11
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 59 FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 59 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
......++++.+....+..+...|+.++|...++++++..| + +.+....+.+ ..++++++++.+++
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~-----~~l~~l~~~l--------~~~~~~~al~~~e~ 319 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-D-----ERLVLLIPRL--------KTNNPEQLEKVLRQ 319 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-C-----HHHHHHHhhc--------cCCChHHHHHHHHH
Confidence 22344567888999999999999999999999999999544 4 5555555555 45999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.++.+|+++..+..+|.++...+++++|.+.|+++++..|++.. +..++.++ ++.++..+|...|.+.+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~-~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADAL-DRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999765 45788888 88999999999998886
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-12 Score=114.01 Aligned_cols=163 Identities=12% Similarity=0.099 Sum_probs=138.3
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
-|+++++.+|+++.+..-+..++... |+.++|..++++++ ...+.....+..+|..+..+|++
T Consensus 56 ~L~qaL~~~P~~~~av~dll~l~~~~-G~~~~A~~~~eka~----------------~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 56 YLQEESKAGPLQSGQVDDWLQIAGWA-GRDQEVIDVYERYQ----------------SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHHHhhCccchhhHHHHHHHHHHc-CCcHHHHHHHHHhc----------------cCCCCCHHHHHHHHHHHHHcCCH
Confidence 47889999999975555777777888 99999999999887 23345556666778899999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
++|++.|+++++.+|++ +.++..++.+ +...++.++|+..+++++..+|.+... ..++.++...++..
T Consensus 119 d~Aiely~kaL~~dP~n-----~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~ 186 (822)
T PRK14574 119 DQALALWQSSLKKDPTN-----PDLISGMIMT------QADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHHHHHhhCCCC-----HHHHHHHHHH------HhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHH
Confidence 99999999999999999 8999999999 999999999999999999999986554 55666666678887
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
+|+..++++++.+|++.+++..+..+. .+.+-
T Consensus 187 ~AL~~~ekll~~~P~n~e~~~~~~~~l-~~~~~ 218 (822)
T PRK14574 187 DALQASSEAVRLAPTSEEVLKNHLEIL-QRNRI 218 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC
Confidence 799999999999999999988888776 44443
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.5e-12 Score=94.98 Aligned_cols=144 Identities=14% Similarity=0.110 Sum_probs=127.3
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|.........|+.+-..|++++|+++|+..+.-+|.+ ...+-..-.+ ...+|+.-+||+.+.+-++
T Consensus 80 ~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~-----~v~~KRKlAi------lka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 80 DRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD-----TVIRKRKLAI------LKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred HhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch-----hHHHHHHHHH------HHHcCCcHHHHHHHHHHHH
Confidence 3457777888889999999999999999999999999998 7777665556 7889999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch--HHHhhhhhccccccccc-ccCCCcc
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD--LKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
..+++.++|..++.+|...|+|++|.-++++.+-+.|.++-....++.++. ....++.-+.+.|.+++ +.|.+++
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r 226 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR 226 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence 999999999999999999999999999999999999999999999998874 23345788899999999 8885543
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=105.33 Aligned_cols=192 Identities=14% Similarity=0.089 Sum_probs=139.0
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-----------------HHHhh-hhhhhHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFH-----------------VLFYL-FCSQKLEQT 67 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~~ 67 (229)
|.++|.-+.....++|..|+.+-.+ |+.++|.++|-+.-..+....+ .+.+. ......|++
T Consensus 513 ykeal~ndasc~ealfniglt~e~~-~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 513 YKEALNNDASCTEALFNIGLTAEAL-GNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred HHHHHcCchHHHHHHHHhcccHHHh-cCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 6678888888899999999999888 9999999998765422111100 11111 222334566
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.++..+|..|-+.|+-.+|..++-...+..|.+ ....-++|.. |....-+++||.+|+++--+.|+..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyryfp~n-----ie~iewl~ay------yidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCN-----IETIEWLAAY------YIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccccCcc-----hHHHHHHHHH------HHhhHHHHHHHHHHHHHHhcCccHH
Confidence 6667777777777777777777776777777766 6666777777 7777778899999999999999988
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch----HHHhhhhhccccccccc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD----LKLKEKNGATKLSPDVF 209 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----~~~~~~~~a~~~~~~~~ 209 (229)
+.....+.|+...|+|++|...|+.....-|.+.+.+..+.+++. ...+++...++..+++-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~eki~ 726 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAEKIK 726 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999988888887763 22333444444444443
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-12 Score=101.76 Aligned_cols=154 Identities=10% Similarity=0.110 Sum_probs=92.7
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH--
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW-- 84 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 84 (229)
.+++..+|++..++...|..+..+ ++.++|+-.|..+... .|-....+..+-.+|...|++
T Consensus 324 eK~I~~~~r~~~alilKG~lL~~~-~R~~~A~IaFR~Aq~L----------------ap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 324 EKCIDSEPRNHEALILKGRLLIAL-ERHTQAVIAFRTAQML----------------APYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred HHHhccCcccchHHHhccHHHHhc-cchHHHHHHHHHHHhc----------------chhhHHHHHHHHHHHHhhchHHH
Confidence 467889999999999999999999 9999999999877633 233333444444444444444
Q ss_pred ----------------------------------HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChH
Q psy13014 85 ----------------------------------SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130 (229)
Q Consensus 85 ----------------------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~ 130 (229)
++|..++++++++.|.+ ..+...+|.. +...|.+.
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-----~~AV~~~AEL------~~~Eg~~~ 455 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-----TPAVNLIAEL------CQVEGPTK 455 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-----HHHHHHHHHH------HHhhCccc
Confidence 45555555555555555 4445555555 55555555
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 131 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
.++..+++.+...|+ ...+..+|.++...+.+++|.+.|..|+++||.+..+...+-.
T Consensus 456 D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred hHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 555555555555543 2344555555555555555555555555555555555444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-12 Score=97.51 Aligned_cols=148 Identities=19% Similarity=0.229 Sum_probs=134.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 60 CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 60 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
.....|++..+ ...+..+...|+-+++.....++...+|.+ ..+...+|.. .+..|++..|+..+.++
T Consensus 59 ~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d-----~~ll~~~gk~------~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 59 AVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKD-----RELLAAQGKN------QIRNGNFGEAVSVLRKA 126 (257)
T ss_pred HHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCccc-----HHHHHHHHHH------HHHhcchHHHHHHHHHH
Confidence 33567888888 999999999999999999999999888988 8888889999 99999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccccccC-CCcccc
Q psy13014 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFLHP-GQPQIQ 218 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~p-~~~~~~ 218 (229)
..+.|+++++|..+|.+|.+.|++++|...|.+++++.|.++.+..|++..+ .-.++...|...+..+.+.| .+..+.
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~-~L~gd~~~A~~lll~a~l~~~ad~~v~ 205 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL-LLRGDLEDAETLLLPAYLSPAADSRVR 205 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH-HHcCCHHHHHHHHHHHHhCCCCchHHH
Confidence 9999999999999999999999999999999999999999999999999998 67788999999999998655 466665
Q ss_pred cC
Q psy13014 219 HN 220 (229)
Q Consensus 219 ~~ 220 (229)
+|
T Consensus 206 ~N 207 (257)
T COG5010 206 QN 207 (257)
T ss_pred HH
Confidence 54
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=96.92 Aligned_cols=196 Identities=15% Similarity=0.143 Sum_probs=153.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
-+.+.|++.|++.-+....|.+++.. |.++.|..-|...+...+........+.. .......+.+......++..|++
T Consensus 94 Dl~rVlelKpDF~~ARiQRg~vllK~-Gele~A~~DF~~vl~~~~s~~~~~eaqsk-l~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 94 DLSRVLELKPDFMAARIQRGVVLLKQ-GELEQAEADFDQVLQHEPSNGLVLEAQSK-LALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred hHHHHHhcCccHHHHHHHhchhhhhc-ccHHHHHHHHHHHHhcCCCcchhHHHHHH-HHhHHHHHHHHHHHHHHhcCCch
Confidence 46789999999999999999999999 99999999998776432211111111110 12223444566667777889999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
..|++...+.+++.|=+ +.++..++.| |...|+...||..++.+-++..++...++.++.+++..|+.+
T Consensus 172 ~~ai~~i~~llEi~~Wd-----a~l~~~Rakc------~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWD-----ASLRQARAKC------YIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred hhHHHHHHHHHhcCcch-----hHHHHHHHHH------HHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 99999999999999987 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCch-----------HHHhhhhhccccccccc-ccCC
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPD-----------LKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~-----------~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
.++...+.+++++|++...+-....+.+ ...+++-+.+...++++ .+|.
T Consensus 241 ~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 241 NSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 9999999999999998876554443322 11122445555566666 5554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-12 Score=98.37 Aligned_cols=196 Identities=11% Similarity=0.082 Sum_probs=157.1
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-----------HHHHHH----------HHHhhhhh-hh
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFY-----------IQFIFH----------VLFYLFCS-QK 63 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~----------~~~~~~~~-~~ 63 (229)
|...++.+|+..++++.+|.++... |..+.|+..-...+.. +.-..+ .-..+... ..
T Consensus 58 F~e~l~~d~~t~e~~ltLGnLfRsR-GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de 136 (389)
T COG2956 58 FLEMLQEDPETFEAHLTLGNLFRSR-GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE 136 (389)
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhc-chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence 5677889999999999999999999 9999998865433311 111110 00011111 12
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
...-..++..+-.+|-..++|++|++.-++..++.+.......+..|..++.. +....+.++|...+.+|++.+
T Consensus 137 ~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~------~~~~~~~d~A~~~l~kAlqa~ 210 (389)
T COG2956 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ------ALASSDVDRARELLKKALQAD 210 (389)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHhhC
Confidence 33445678888899999999999999999999999988777888999999999 999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH-HHHHHhccCchHHHhhhhhccccccccc
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR-DAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
|+++.+-..+|.+....|+|+.|++.++.+++.||+.. .+.-.+..+| ..+++..+.+..+.+..
T Consensus 211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y-~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY-AQLGKPAEGLNFLRRAM 276 (389)
T ss_pred ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999865 4666777777 78888777777766665
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-12 Score=110.37 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
+.....+...|+..+..|++++|...+.++|+++|.+ +.+|..+|.+ |..+|+.++|....-.|-.++|
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-----~~ay~tL~~I------yEqrGd~eK~l~~~llAAHL~p 204 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN-----PIAYYTLGEI------YEQRGDIEKALNFWLLAAHLNP 204 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-----hhhHHHHHHH------HHHcccHHHHHHHHHHHHhcCC
Confidence 3456788899999999999999999999999999999 9999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
.+...|..++.....+|++++|.-+|.+|++.+|.+.......+.++ +++|+...|+..+.+++ +.|
T Consensus 205 ~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~-~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 205 KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLY-QKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999 99999999999999999 777
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.1e-13 Score=82.35 Aligned_cols=67 Identities=25% Similarity=0.424 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC-ChHHHHHHHHHHHhcCC
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE-KPDQSILACSKAITLNP 144 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p 144 (229)
++.+|..+|.+++..|++++|+.+|+++++++|++ +.+++++|.+ +..+| ++++|+++++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-----~~~~~~~g~~------~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-----AEAYYNLGLA------YMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-----HHHHHHHHHH------HHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHhCccHHHHHHHHHHHHHcCc
Confidence 46789999999999999999999999999999999 9999999999 99999 79999999999999998
|
... |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=99.95 Aligned_cols=150 Identities=17% Similarity=0.166 Sum_probs=111.2
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|.-+.++|..+...+.. |++++|...+...+ ...|+++..+...+.++...++..+|++.++
T Consensus 302 ~~~~~aa~YG~A~~~~~~-~~~d~A~~~l~~L~----------------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ 364 (484)
T COG4783 302 KRGGLAAQYGRALQTYLA-GQYDEALKLLQPLI----------------AAQPDNPYYLELAGDILLEANKAKEAIERLK 364 (484)
T ss_pred CccchHHHHHHHHHHHHh-cccchHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 366677777777777777 77777777776655 5667777777788888888888888888888
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
+++.++|.. +.++.++|.+ +++.|++.+|+..++..+..+|+++..|..+|.+|..+|+-.++...+..
T Consensus 365 kal~l~P~~-----~~l~~~~a~a------ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 365 KALALDPNS-----PLLQLNLAQA------LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHhcCCCc-----cHHHHHHHHH------HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 888888877 7778888888 88888888888888888888888888888888877777777666666666
Q ss_pred HHHhCCCcHHHHHHhccC
Q psy13014 173 ILELDPNNRDAYVATKVS 190 (229)
Q Consensus 173 al~~~p~~~~~~~~l~~~ 190 (229)
...+......+...+...
T Consensus 434 ~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 434 GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHhCCCHHHHHHHHHHH
Confidence 666665555554444333
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-12 Score=103.55 Aligned_cols=154 Identities=12% Similarity=0.003 Sum_probs=122.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH------Hhh---------------hhhhhHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVL------FYL---------------FCSQKLEQTAISLK 72 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~---------------~~~~~~~~~~~~~~ 72 (229)
++.....+..+.++... |+++++...+++.+...+...... ... ......+.....+.
T Consensus 40 ~~~~e~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 118 (355)
T cd05804 40 ATERERAHVEALSAWIA-GDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLG 118 (355)
T ss_pred CCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHH
Confidence 34566777888888888 999999888887764422111110 000 01134455667778
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH----H
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL----K 148 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----~ 148 (229)
.+|.++...|++++|+..+++++.+.|++ +.++..+|.+ +...|++++|+.++++++...|.++ .
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~-----~~~~~~la~i------~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDD-----AWAVHAVAHV------LEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----cHHHHHHHHH------HHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 89999999999999999999999999999 9999999999 9999999999999999999987543 3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
.+..+|.++...|++++|+..|++++...|.
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 4668999999999999999999999887773
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=104.41 Aligned_cols=183 Identities=17% Similarity=0.130 Sum_probs=148.4
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
...|.-..+...++..+... |+++.|...++.++..+... . ....+.-......+|..|..+++|.+|+..
T Consensus 193 ~~~P~~~~~~~~La~~y~~~-g~~e~A~~l~k~Al~~l~k~---~-----G~~hl~va~~l~~~a~~y~~~~k~~eAv~l 263 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQ-GRLEKAEPLCKQALRILEKT---S-----GLKHLVVASMLNILALVYRSLGKYDEAVNL 263 (508)
T ss_pred cCCchHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHc---c-----CccCHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 35677778888899999999 99999999999887432100 0 023455666666899999999999999999
Q ss_pred HHHHHHhCCCC---CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHh
Q psy13014 91 YNEALRSCPRS---CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--------PSYLKVYQRRARLYQQ 159 (229)
Q Consensus 91 ~~~al~~~p~~---~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~ 159 (229)
|++|+.+.... ..+..+.++.+||.+ |...|++++|..++++|+++. |.-...+.+++.++..
T Consensus 264 y~~AL~i~e~~~G~~h~~va~~l~nLa~l------y~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~ 337 (508)
T KOG1840|consen 264 YEEALTIREEVFGEDHPAVAATLNNLAVL------YYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS 337 (508)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHH------HhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH
Confidence 99999984311 123357889999999 999999999999999999873 2334568889999999
Q ss_pred cccHHHHHHHHHHHHHhC--------CCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 160 SDKLDEALADYQKILELD--------PNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 160 ~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++++++|+..+++++++. |.-...+.++|.++ ..++++.+|.+.+.+++
T Consensus 338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~-~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY-LKMGKYKEAEELYKKAI 394 (508)
T ss_pred hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH-HHhcchhHHHHHHHHHH
Confidence 999999999999998763 24457888999999 99999999999999988
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=83.99 Aligned_cols=84 Identities=20% Similarity=0.293 Sum_probs=74.2
Q ss_pred HccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy13014 80 RLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 159 (229)
.+|+|++|+..+++++...|.+. ....++.+|.| ++..|+|++|+..+++ ...+|.+....+.+|.|+..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~---~~~~~~~la~~------~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP---NSAYLYNLAQC------YFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH---HHHHHHHHHHH------HHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCCh---hHHHHHHHHHH------HHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999531 26788889999 9999999999999999 88999999999999999999
Q ss_pred cccHHHHHHHHHHH
Q psy13014 160 SDKLDEALADYQKI 173 (229)
Q Consensus 160 ~~~~~~A~~~~~~a 173 (229)
+|++++|+..|+++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=101.38 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP 99 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 99 (229)
+...|...+.. |++..|+..|++++ ...|.++.+++.+|.++...|++++|+..+++++.++|
T Consensus 5 l~~~a~~a~~~-~~~~~Ai~~~~~Al----------------~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 5 LEDKAKEAFVD-DDFALAVDLYTQAI----------------DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 45667888888 99999999999998 57788899999999999999999999999999999999
Q ss_pred CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 100 RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 100 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
.+ +.+++.+|.+ ++.+|++++|+..|+++++++|++..+...++.|...+..
T Consensus 68 ~~-----~~a~~~lg~~------~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 68 SL-----AKAYLRKGTA------CMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CC-----HHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 99 9999999999 9999999999999999999999999999998888766643
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=110.21 Aligned_cols=169 Identities=14% Similarity=0.089 Sum_probs=142.8
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|+++..+..+|.+.... .-++.|.+..+ ..++.+...+|...+..++|.++..+++
T Consensus 453 k~~d~~lyc~LGDv~~d~-s~yEkawElsn----------------------~~sarA~r~~~~~~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDP-SLYEKAWELSN----------------------YISARAQRSLALLILSNKDFSEADKHLE 509 (777)
T ss_pred CCCcchhHHHhhhhccCh-HHHHHHHHHhh----------------------hhhHHHHHhhccccccchhHHHHHHHHH
Confidence 566666666666665555 33343333332 2334466777777888999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
..++++|-. ...|+.+|.| ..++++++.|..+|.+++.++|++..+|.+++.+|...|+-.+|...+++
T Consensus 510 ~sl~~nplq-----~~~wf~~G~~------ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 510 RSLEINPLQ-----LGTWFGLGCA------ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred HHhhcCccc-----hhHHHhccHH------HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHH
Confidence 999999999 9999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHhccCchHHHhhhhhcccccccccccCCCcc
Q psy13014 173 ILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFLHPGQPQ 216 (229)
Q Consensus 173 al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~p~~~~ 216 (229)
+++.+-++...|-|.-.+. .+.+++..|++.+.+.+..|.+..
T Consensus 579 AlKcn~~~w~iWENymlvs-vdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 579 ALKCNYQHWQIWENYMLVS-VDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred HhhcCCCCCeeeechhhhh-hhcccHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999888 999999999999999885554444
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-11 Score=103.21 Aligned_cols=135 Identities=15% Similarity=0.095 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP 99 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 99 (229)
|...+..+... +..+++..++.++. ...+..+..++..|..+...|++.+|.+.|..++.++|
T Consensus 653 wllaa~~~~~~-~~~~~a~~CL~Ea~----------------~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP 715 (799)
T KOG4162|consen 653 WLLAADLFLLS-GNDDEARSCLLEAS----------------KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDP 715 (799)
T ss_pred HHHHHHHHHhc-CCchHHHHHHHHHH----------------hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCC
Confidence 34445444444 66777776666655 57789999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHH--HHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 100 RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL--ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 100 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
++ ..+...+|.+ +...|+..-|.. .+..+++++|.++++|+.+|.++...|+.++|.++|..+++++
T Consensus 716 ~h-----v~s~~Ala~~------lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 716 DH-----VPSMTALAEL------LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CC-----cHHHHHHHHH------HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 99 9999999999 999999888888 9999999999999999999999999999999999999999999
Q ss_pred CCcHH
Q psy13014 178 PNNRD 182 (229)
Q Consensus 178 p~~~~ 182 (229)
+++|.
T Consensus 785 ~S~PV 789 (799)
T KOG4162|consen 785 ESNPV 789 (799)
T ss_pred cCCCc
Confidence 98874
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-11 Score=103.79 Aligned_cols=134 Identities=19% Similarity=0.262 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...++..|..++.. |++++|...+...+ ...|..+.+|+.+|.+|-++|+.+++...+-.|-.
T Consensus 139 l~~ll~eAN~lfar-g~~eeA~~i~~EvI----------------kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH 201 (895)
T KOG2076|consen 139 LRQLLGEANNLFAR-GDLEEAEEILMEVI----------------KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH 201 (895)
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHH----------------HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 56778888889999 99999999998888 78899999999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
++|.+ ...|..++.. ..++|++.+|+-+|.+||+.+|.+....+..+.+|.++|+...|...|.+++.+
T Consensus 202 L~p~d-----~e~W~~ladl------s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 202 LNPKD-----YELWKRLADL------SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred cCCCC-----hHHHHHHHHH------HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 99999 8999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q psy13014 177 DP 178 (229)
Q Consensus 177 ~p 178 (229)
+|
T Consensus 271 ~p 272 (895)
T KOG2076|consen 271 DP 272 (895)
T ss_pred CC
Confidence 99
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-11 Score=87.50 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.....+..++.+|.++..+|++++|+..|++++.+.|+.. ..+.++.++|.+ +...|++++|+..+++++.+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~--~~~~~~~~lg~~------~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY--DRSYILYNIGLI------HTSNGEHTKALEYYFQALER 101 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch--hhHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh
Confidence 3455678899999999999999999999999999977531 125689999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHH-------hcccHH-------HHHHHHHHHHHhCCCcH
Q psy13014 143 NPSYLKVYQRRARLYQ-------QSDKLD-------EALADYQKILELDPNNR 181 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 181 (229)
+|.....+.++|.++. ..|+++ +|+..|++++..+|.+.
T Consensus 102 ~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 102 NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999999999999998 666665 67777777888888644
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-11 Score=93.19 Aligned_cols=181 Identities=12% Similarity=0.015 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH----HHH-------Hhhhhh------------hhHHHHHHHHHHH
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF----HVL-------FYLFCS------------QKLEQTAISLKDE 74 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~-------~~~~~~------------~~~~~~~~~~~~~ 74 (229)
.+++.+|.=|... |-++.|...|...+..-.+.. +.+ .|.+.. ...-+-+..+..+
T Consensus 108 lAl~qL~~Dym~a-Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 108 LALQQLGRDYMAA-GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 4677788888888 888888888865553111111 111 122111 2233567889999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-HHHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY-LKVYQRR 153 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l 153 (229)
+..+....+.+.|...+.+|++.+|++ ..+-..+|.+ ....|+|++|++.++.+++.||.. +.+.-.+
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~c-----vRAsi~lG~v------~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKKC-----VRASIILGRV------ELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCccc-----eehhhhhhHH------HHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 999999999999999999999999999 8899999999 999999999999999999999986 5678889
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 154 ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 154 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
..||..+|+.++....+.++.+..+... +...++.+. +..+-...|.....+.+ ..|
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~li-e~~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLI-ELQEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHH-HHhhChHHHHHHHHHHHhhCC
Confidence 9999999999999999999999988754 334555444 33444555555555555 555
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.2e-12 Score=77.01 Aligned_cols=64 Identities=31% Similarity=0.446 Sum_probs=59.5
Q ss_pred hHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 112 ~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
.+|.. ++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~------~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARA------LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHH------HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHH------HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46777 99999999999999999999999999999999999999999999999999999999975
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-11 Score=86.53 Aligned_cols=111 Identities=8% Similarity=-0.062 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...++.-...+..|.-+++.|++++|...|.-....+|.+ +..|+.+|.| +..+++|++|+..|..+..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n-----~~Y~~GLaa~------~Q~~k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN-----PDYTMGLAAV------CQLKKQFQKACDLYAVAFT 99 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc-----HHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
++++++...+..|.|+..+|+.+.|..+|+.++. .|.+..+.
T Consensus 100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 9999999999999999999999999999999998 56655443
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=108.15 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=132.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|-+++.++|+...++..+|.+|... .+...|..+|.++. ..++.++.++-..+..+....++
T Consensus 480 ali~alrld~~~apaf~~LG~iYrd~-~Dm~RA~kCf~KAF----------------eLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 480 ALIRALRLDVSLAPAFAFLGQIYRDS-DDMKRAKKCFDKAF----------------ELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHh----------------cCCchhhhhHHHHHHHhhccccH
Confidence 35678999999999999999999998 79999999998887 56667777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
+.|......+-+..|.. .....|..+|.. |...+++.+|+.+|+.++..+|++...|..+|.+|...|++.
T Consensus 543 e~a~~I~l~~~qka~a~---~~k~nW~~rG~y------yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~ 613 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKAPAF---ACKENWVQRGPY------YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYS 613 (1238)
T ss_pred HHHHHHHHHHhhhchHH---HHHhhhhhcccc------ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCcee
Confidence 77777754444444432 114455667777 777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
-|++.|.++..++|.+....+..+.+. ..++++.+++..++..+
T Consensus 614 ~AlKvF~kAs~LrP~s~y~~fk~A~~e-cd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 614 HALKVFTKASLLRPLSKYGRFKEAVME-CDNGKYKEALDALGLII 657 (1238)
T ss_pred hHHHhhhhhHhcCcHhHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Confidence 777777777777777777777777665 66777777766665554
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=104.13 Aligned_cols=143 Identities=13% Similarity=0.074 Sum_probs=127.7
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
++.|+..|++++++...|..+.-+ |+-++|...-...+ ..++.....|..+|.++...++|++
T Consensus 31 ~~iL~k~~eHgeslAmkGL~L~~l-g~~~ea~~~vr~gl----------------r~d~~S~vCwHv~gl~~R~dK~Y~e 93 (700)
T KOG1156|consen 31 KQILKKFPEHGESLAMKGLTLNCL-GKKEEAYELVRLGL----------------RNDLKSHVCWHVLGLLQRSDKKYDE 93 (700)
T ss_pred HHHHHhCCccchhHHhccchhhcc-cchHHHHHHHHHHh----------------ccCcccchhHHHHHHHHhhhhhHHH
Confidence 456788999999999999999999 99999988777666 5777888899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
|+.+|..|+.+.|++ ..++..++.. ..++++++.....-.+.++..|.+-..|...|.++.-.|++..|
T Consensus 94 aiKcy~nAl~~~~dN-----~qilrDlslL------Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156|consen 94 AIKCYRNALKIEKDN-----LQILRDLSLL------QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHHHHHHHhcCCCc-----HHHHHHHHHH------HHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q psy13014 167 LADYQKILELD 177 (229)
Q Consensus 167 ~~~~~~al~~~ 177 (229)
....+...+..
T Consensus 163 ~~il~ef~~t~ 173 (700)
T KOG1156|consen 163 LEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHhh
Confidence 88887776554
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=100.70 Aligned_cols=140 Identities=17% Similarity=0.121 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.+.-++.++.+.|++.+..|++++|.+.|.+++.-+... ..+++++|.. +..+|+.++|+.+|-+.-.+
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-----~ealfniglt------~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-----TEALFNIGLT------AEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-----HHHHHHhccc------HHHhcCHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555544444 4455555555 55555555555555554444
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
--+++.+++.++.+|..+.+..+|++++.++.++-|+++.++.-++.++ .+.++.-.|.+.+-.++ .-|.|
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dly-dqegdksqafq~~ydsyryfp~n 625 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLY-DQEGDKSQAFQCHYDSYRYFPCN 625 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHh-hcccchhhhhhhhhhcccccCcc
Confidence 4444555555555555555555555555555555555555555555555 44444444444444444 44433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-11 Score=100.44 Aligned_cols=183 Identities=9% Similarity=0.041 Sum_probs=133.2
Q ss_pred hhhcccCCchHHHH-HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 7 QQELSKNPSFLYTI-YFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 7 ~~~l~~~p~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
.++.+.+|++..+. ...+.++... |+++.|...+++.. ...|+++.++..++.++...|+++
T Consensus 142 ~~A~~~~~~~~~~~~l~~a~l~l~~-g~~~~Al~~l~~~~----------------~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 142 ERAAELADNDQLPVEITRVRIQLAR-NENHAARHGVDKLL----------------EVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------hcCCCCHHHHHHHHHHHHHHHhHH
Confidence 34444555543322 2224445445 55555555555444 567888899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCc-------------------------------------hhhHHHHHhHhhhhhhhHHhhccCC
Q psy13014 86 ESLAKYNEALRSCPRSCS-------------------------------------VSRAVFYANRSAALEKLASYLSLEK 128 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~-------------------------------------~~~~~~~~~lg~~~~~~~~~~~~~~ 128 (229)
+|++.+.+..+..+.+.. ...+.++..+|.. +...|+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~------l~~~g~ 278 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEH------LIECDD 278 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHH------HHHCCC
Confidence 999777777655433200 0013445555666 889999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
.++|...++++++. |.++.....++.+ ..++.++++..+++.++..|+++..+..+|+++ .+.+++.+|.+.|+++
T Consensus 279 ~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~-~~~~~~~~A~~~le~a 354 (398)
T PRK10747 279 HDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLL-MKHGEWQEASLAFRAA 354 (398)
T ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Confidence 99999999999994 5566555555544 449999999999999999999999999999999 8899999999999999
Q ss_pred c-ccCCCcc
Q psy13014 209 F-LHPGQPQ 216 (229)
Q Consensus 209 ~-~~p~~~~ 216 (229)
+ .+|++..
T Consensus 355 l~~~P~~~~ 363 (398)
T PRK10747 355 LKQRPDAYD 363 (398)
T ss_pred HhcCCCHHH
Confidence 9 8886543
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-11 Score=97.44 Aligned_cols=113 Identities=27% Similarity=0.446 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
.-+...|+.|+++|.|++|+.||.+++..+|.+ +..+.++|.+ |+++..+..|...|..|+.++-...+
T Consensus 98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N-----pV~~~NRA~A------Ylk~K~FA~AE~DC~~AiaLd~~Y~K 166 (536)
T KOG4648|consen 98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN-----PVYHINRALA------YLKQKSFAQAEEDCEAAIALDKLYVK 166 (536)
T ss_pred HHHHHhhhhhhhccchhHHHHHhhhhhccCCCC-----ccchhhHHHH------HHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 336789999999999999999999999999998 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
+|.+.|.+-..+|+.++|.+.++.++++.|++.+....++.+..
T Consensus 167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 167 AYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 99999999999999999999999999999999998888877764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.6e-11 Score=106.39 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=146.1
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH---HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQF---IFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.+++.+|+.+.+++.+|.+++.. +++.++... ..+..... ...+.....+....+++-.+++.+|.||-++|++
T Consensus 56 ~~l~~~P~~i~~yy~~G~l~~q~-~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~ 132 (906)
T PRK14720 56 EHLKEHKKSISALYISGILSLSR-RPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN 132 (906)
T ss_pred HHHHhCCcceehHHHHHHHHHhh-cchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh
Confidence 57788999999999999988888 887776654 22211110 0011112233445677778999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh--------------------cCC
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT--------------------LNP 144 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~--------------------~~p 144 (229)
++|...|+++++.+|.+ +.+..++|.. |... +.++|++++.+|+. .+|
T Consensus 133 ~ka~~~yer~L~~D~~n-----~~aLNn~AY~------~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~ 200 (906)
T PRK14720 133 KKLKGVWERLVKADRDN-----PEIVKKLATS------YEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNS 200 (906)
T ss_pred HHHHHHHHHHHhcCccc-----HHHHHHHHHH------HHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCc
Confidence 99999999999999999 9999999999 6666 67777666666654 456
Q ss_pred CcHHHHH--------HHH------------HHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHH---------
Q psy13014 145 SYLKVYQ--------RRA------------RLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKL--------- 195 (229)
Q Consensus 145 ~~~~~~~--------~la------------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------- 195 (229)
++...+. ..+ .+|...+++++++..++.+++++|.+..+...++.++..+-
T Consensus 201 ~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~ 280 (906)
T PRK14720 201 DDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDY 280 (906)
T ss_pred ccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHH
Confidence 6544322 223 67788899999999999999999999999999999986111
Q ss_pred ----------hhhhhccccccccc-ccCCCccccc
Q psy13014 196 ----------KEKNGATKLSPDVF-LHPGQPQIQH 219 (229)
Q Consensus 196 ----------~~~~~a~~~~~~~~-~~p~~~~~~~ 219 (229)
+.+..++..|++-+ +++++|-+.+
T Consensus 281 l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv~H~ 315 (906)
T PRK14720 281 LKMSDIGNNRKPVKDCIADFEKNIVFDTGNFVYHR 315 (906)
T ss_pred HHHhccccCCccHHHHHHHHHHHeeecCCCEEEEc
Confidence 22455677777777 7777776554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-10 Score=94.99 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
+....+++..+...+..|++++|...++..+...|++ +.++...+.+ ++..|+..+|++.+++++.++|
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N-----~~~~~~~~~i------~~~~nk~~~A~e~~~kal~l~P 371 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDN-----PYYLELAGDI------LLEANKAKEAIERLKKALALDP 371 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCChHHHHHHHHHHHhcCC
Confidence 5677899999999999999999999999999999999 9999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+.....+++|.++.+.|++.+|+..+...+.-+|+++..|..++..+ ...++..++..-+.+.+
T Consensus 372 ~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay-~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 372 NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAY-AELGNRAEALLARAEGY 435 (484)
T ss_pred CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHH-HHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 77777666655544443
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=97.10 Aligned_cols=182 Identities=18% Similarity=0.192 Sum_probs=150.0
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
.+|.-..++..+|.+|... |++++|..++++++..... ......++-+..+..++.++..++++++|+.++
T Consensus 278 ~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~--------~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~ 348 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEK--------LLGASHPEVAAQLSELAAILQSMNEYEEAKKLL 348 (508)
T ss_pred CCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHH--------hhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 3555566788899999999 9999999999998865543 112456788889999999999999999999999
Q ss_pred HHHHHhCC---CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhc
Q psy13014 92 NEALRSCP---RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--------PSYLKVYQRRARLYQQS 160 (229)
Q Consensus 92 ~~al~~~p---~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~ 160 (229)
++++++.- .......+..+.++|.+ |+.+|++++|.+.+++|+.+. +.....+.++|..+...
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l------~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAEL------YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHH------HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 99998743 22122458899999999 999999999999999999874 33356788999999999
Q ss_pred ccHHHHHHHHHHHHHh-------CCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 161 DKLDEALADYQKILEL-------DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+++.+|...|..++.+ .|+....+.+|+.+| ..+++++.|.+....++
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y-~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY-RAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHcccHHHHHHHHHHHH
Confidence 9999999999988865 355567889999999 89999998888777666
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.5e-11 Score=100.62 Aligned_cols=179 Identities=18% Similarity=0.163 Sum_probs=135.7
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|........++.++... |-..+|...|++.- .|-....+|...|+..+|..+..+
T Consensus 395 pp~Wq~q~~laell~sl-GitksAl~I~Erle------------------------mw~~vi~CY~~lg~~~kaeei~~q 449 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSL-GITKSALVIFERLE------------------------MWDPVILCYLLLGQHGKAEEINRQ 449 (777)
T ss_pred CCcchHHHHHHHHHHHc-chHHHHHHHHHhHH------------------------HHHHHHHHHHHhcccchHHHHHHH
Confidence 44445556677788888 88888888776654 333444455555555555555555
Q ss_pred HHHhCCCCCchhhHHHHHhHhhh------hh---------------hhHH-hhccCChHHHHHHHHHHHhcCCCcHHHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAA------LE---------------KLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQ 151 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~------~~---------------~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (229)
-++ .|.. +.+|..+|.+ ++ .+|. ....++|+++..+++..++++|-....|+
T Consensus 450 ~le-k~~d-----~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf 523 (777)
T KOG1128|consen 450 ELE-KDPD-----PRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWF 523 (777)
T ss_pred Hhc-CCCc-----chhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHH
Confidence 555 2222 4444444444 00 0000 55679999999999999999999999999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccccCCCCc
Q psy13014 152 RRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQHNPETI 224 (229)
Q Consensus 152 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~~~~~~ 224 (229)
.+|.+..++++++.|+++|..++.++|++..+|.+++..+ -++++..+|...+.+++ -+-++++++-|-...
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay-i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlv 596 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY-IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLV 596 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH-HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhh
Confidence 9999999999999999999999999999999999999999 89999999999999999 778999998886544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=90.86 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=98.1
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 68 AISLKDEGNAL-FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 68 ~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
....+..|..+ +..|+|++|+..|+..+...|++. ..+.+++++|.+ |+..|++++|+..|.++++..|++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~--~a~~A~y~LG~~------y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST--YQPNANYWLGQL------NYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc--chHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCCCC
Confidence 36778888876 567999999999999999999872 125799999999 999999999999999999988875
Q ss_pred ---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 147 ---LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 147 ---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
+.+++.+|.++..+|++++|+..|+++++..|+...+...
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A 256 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQA 256 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 6789999999999999999999999999999998876544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-11 Score=98.98 Aligned_cols=201 Identities=6% Similarity=-0.130 Sum_probs=144.1
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH---H---------------HHH-hhhhhhhHHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF---H---------------VLF-YLFCSQKLEQT 67 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---------------~~~-~~~~~~~~~~~ 67 (229)
.++.+..|+....+...|.+.... |+++.+..++.++....+... . ... ........|++
T Consensus 108 ~~~~~~~~~~~~~~llaA~aa~~~-g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~ 186 (409)
T TIGR00540 108 AKNADHAAEPVLNLIKAAEAAQQR-GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH 186 (409)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 345556666666777777777777 888888887776543211100 0 000 01123456888
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCch-------------------------------------hhHHHH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSV-------------------------------------SRAVFY 110 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------------------------~~~~~~ 110 (229)
+.++..++.++...|++++|++.+.+..+....+... ..+.++
T Consensus 187 ~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~ 266 (409)
T TIGR00540 187 KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK 266 (409)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence 8999999999999999999999888888653322110 023444
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH--HHHHHHHHhcccHHHHHHHHHHHHHhCCCcH--HHHHH
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY--QRRARLYQQSDKLDEALADYQKILELDPNNR--DAYVA 186 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~ 186 (229)
..+|.. +...|++++|++.++++++..|++.... ..........++.+.+.+.++++++.+|+++ .....
T Consensus 267 ~~~a~~------l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~s 340 (409)
T TIGR00540 267 IALAEH------LIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRA 340 (409)
T ss_pred HHHHHH------HHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 444455 8899999999999999999999987532 2233344456888999999999999999999 89999
Q ss_pred hccCchHHHhhhhhcccccc--ccc-ccCCCc
Q psy13014 187 TKVSPDLKLKEKNGATKLSP--DVF-LHPGQP 215 (229)
Q Consensus 187 l~~~~~~~~~~~~~a~~~~~--~~~-~~p~~~ 215 (229)
+|+++ .+.+++.+|.+.++ .++ .+|++.
T Consensus 341 Lg~l~-~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 341 LGQLL-MKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred HHHHH-HHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 99999 89999999999999 466 677553
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=89.94 Aligned_cols=115 Identities=20% Similarity=0.186 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC---ChHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE---KPDQSILACS 137 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~A~~~~~ 137 (229)
...+|+++.-|..+|.+|..+|++..|...|.+++++.|++ ++.+..+|.+ ++... ...++...++
T Consensus 149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-----~~~~~g~aea------L~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-----PEILLGLAEA------LYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHhcCCcccHHHHHHHH
Confidence 36789999999999999999999999999999999999999 9999999999 65443 4568899999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 138 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
+++..+|.++.+.+.+|..++..|+|.+|+..++..+...|.+..-...
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ 266 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL 266 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence 9999999999999999999999999999999999999999877654433
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-10 Score=96.62 Aligned_cols=169 Identities=17% Similarity=0.190 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
+.+.++....++... |++++|...+++.. ....+.....-..|.++.++|++++|...|...+
T Consensus 3 ~SE~lLY~~~il~e~-g~~~~AL~~L~~~~----------------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li 65 (517)
T PF12569_consen 3 HSELLLYKNSILEEA-GDYEEALEHLEKNE----------------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI 65 (517)
T ss_pred HHHHHHHHHHHHHHC-CCHHHHHHHHHhhh----------------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345667777888888 99999999887655 3445666777888999999999999999999999
Q ss_pred HhCCCCCc------------------------------------------------------------------------
Q psy13014 96 RSCPRSCS------------------------------------------------------------------------ 103 (229)
Q Consensus 96 ~~~p~~~~------------------------------------------------------------------------ 103 (229)
..+|++..
T Consensus 66 ~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl 145 (517)
T PF12569_consen 66 DRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL 145 (517)
T ss_pred HHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH
Confidence 99888731
Q ss_pred ---------------------------------------------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 104 ---------------------------------------------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 104 ---------------------------------------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
....++++.+|.. |-..|++++|++++++
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqh------yd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQH------YDYLGDYEKALEYIDK 219 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHH------HHHhCCHHHHHHHHHH
Confidence 0011334445555 5666677777777777
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
+|+..|..++.|+..|.++...|++.+|..+++.|.++|+.|..+-.-.+.-. .+.++.++|.+.....
T Consensus 220 aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~-LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 220 AIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL-LRAGRIEEAEKTASLF 288 (517)
T ss_pred HHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH-HHCCCHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777766665544443333 4555555555554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-11 Score=74.46 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=60.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.+|..++..|++++|+..|+++++.+|.+ +.+++.+|.+ +..+|++++|+..|+++++++|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN-----PEAWYLLGRI------LYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH-----HHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 368999999999999999999999999998 9999999999 9999999999999999999999875
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=98.56 Aligned_cols=197 Identities=9% Similarity=-0.020 Sum_probs=123.4
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH------HH------------hhhhhhhHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHV------LF------------YLFCSQKLEQT 67 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~------------~~~~~~~~~~~ 67 (229)
|-.+|+.+|.....|...+.+--.. |..++-...+.+++...+...-. .. ........|++
T Consensus 539 ya~alqvfp~k~slWlra~~~ek~h-gt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pns 617 (913)
T KOG0495|consen 539 YAHALQVFPCKKSLWLRAAMFEKSH-GTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS 617 (913)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc
Confidence 4456666666666665555544444 66666666666655321100000 00 00111233344
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
-.+|+.--...+...+++.|...+.++....|. ..+|+.-+.. ...+++.++|+..++++++..|+..
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgT------eRv~mKs~~~------er~ld~~eeA~rllEe~lk~fp~f~ 685 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGT------ERVWMKSANL------ERYLDNVEEALRLLEEALKSFPDFH 685 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCc------chhhHHHhHH------HHHhhhHHHHHHHHHHHHHhCCchH
Confidence 444544444555555555555555555554443 3445555555 6667888888888888888888888
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+.|..+|.++..+++.+.|...|...++.-|.....|..++.+. ++.+....|...+.++. .+|++..
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle-Ek~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE-EKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH-HHhcchhhHHHHHHHHHhcCCCcch
Confidence 88888888888888888888888888888888888888888776 67777777777777777 7776543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-10 Score=83.03 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|....+++.+|..+... |++++|..+|++++...+ ..+..+.++..+|.++...|++++|+..+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQAD-GEYAEALENYEEALKLEE-------------DPNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HhhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhh-------------ccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445666789999999999 999999999998873211 222346789999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCC--------------hHHHHHHHHHHHhcCCCc
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEK--------------PDQSILACSKAITLNPSY 146 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 146 (229)
+++...|.+ ...+..+|.+ +...|+ +++|++++++++..+|++
T Consensus 97 ~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 97 QALELNPKQ-----PSALNNIAVI------YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHhCccc-----HHHHHHHHHH------HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999998 8999999999 777666 577788888888888876
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-10 Score=91.67 Aligned_cols=197 Identities=15% Similarity=0.107 Sum_probs=143.6
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH---hh---------------hhhhhHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF---YL---------------FCSQKLEQT 67 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~---------------~~~~~~~~~ 67 (229)
|-.-...-|+|...+..+|.+++.. |+..+|+..|++....-++...... ++ .........
T Consensus 221 ~le~~~~lr~NvhLl~~lak~~~~~-Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t 299 (564)
T KOG1174|consen 221 MLHDNTTLRCNEHLMMALGKCLYYN-GDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT 299 (564)
T ss_pred HHHhhccCCccHHHHHHHhhhhhhh-cCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc
Confidence 4445667788999999999999999 9999999999876643222222111 00 001122344
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.-|+.-|...+..+++..|+.+-+++|+.+|.+ ...+...|.+ +..+++.++|+-+|+.|+.+.|-..
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~-----~~alilKG~l------L~~~~R~~~A~IaFR~Aq~Lap~rL 368 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRN-----HEALILKGRL------LIALERHTQAVIAFRTAQMLAPYRL 368 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCccc-----chHHHhccHH------HHhccchHHHHHHHHHHHhcchhhH
Confidence 5567777788888888888888888888888888 7888888888 8888888888888888888888888
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhc-cCchHHHhhhhhccccccccc-ccCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATK-VSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+.|-.+-.+|...|++.+|...-..++..-|.+..+...+| .++...-.-.++|.+.+++.+ ++|+.
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 88888888888888888888888888888888888777775 444333333455666666776 77643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.3e-10 Score=94.57 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=117.0
Q ss_pred cccCCchHHH--HHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc---
Q psy13014 10 LSKNPSFLYT--IYFSCFILFIL--FSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN--- 82 (229)
Q Consensus 10 l~~~p~~~~~--~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 82 (229)
...-|.++.+ ++..|..+... .+....|...|++++ ..+|+.+.++..++.++....
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai----------------~ldP~~a~a~A~la~~~~~~~~~~ 393 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL----------------KSEPDFTYAQAEKALADIVRHSQQ 393 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------------HhCCCcHHHHHHHHHHHHHHHhcC
Confidence 3445666554 66667666543 134678888888887 678888888888888775542
Q ss_pred -----CHHHHHHHHHHHHHh--CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 83 -----QWSESLAKYNEALRS--CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 83 -----~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
+...+.....+++.+ +|.. +.++..+|.. ....|++++|...+++|+.++| +..+|..+|.
T Consensus 394 ~~~~~~l~~a~~~~~~a~al~~~~~~-----~~~~~ala~~------~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 394 PLDEKQLAALSTELDNIVALPELNVL-----PRIYEILAVQ------ALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred CccHHHHHHHHHHHHHhhhcccCcCC-----hHHHHHHHHH------HHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 345566666676664 5555 7889989999 8899999999999999999999 5889999999
Q ss_pred HHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 156 LYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
++...|++++|+..|++|+.++|.++..+.
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~L~P~~pt~~~ 491 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFNLRPGENTLYW 491 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCchHHH
Confidence 999999999999999999999999886443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=102.09 Aligned_cols=141 Identities=9% Similarity=0.012 Sum_probs=122.0
Q ss_pred cccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy13014 10 LSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLA 89 (229)
Q Consensus 10 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 89 (229)
...+|++..++..+...+... ++++++....+..+ ...|+....++..|..+++.+++.++..
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~-~~~deai~i~~~~l----------------~~~P~~i~~yy~~G~l~~q~~~~~~~~l 86 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSE-NLTDEAKDICEEHL----------------KEHKKSISALYISGILSLSRRPLNDSNL 86 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhc-CCHHHHHHHHHHHH----------------HhCCcceehHHHHHHHHHhhcchhhhhh
Confidence 357899999999999999888 99999999998777 5778888899999999999988888877
Q ss_pred HHHHHHHhCCCCCc--------------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 90 KYNEALRSCPRSCS--------------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 90 ~~~~al~~~p~~~~--------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
. .++...+.+.+ .+...+++.+|.| |-++|++++|...|+++++.+|+++.++.++|.
T Consensus 87 v--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~------Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY 158 (906)
T PRK14720 87 L--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEA------YAKLNENKKLKGVWERLVKADRDNPEIVKKLAT 158 (906)
T ss_pred h--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHH------HHHcCChHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 7 66666665510 0013789999999 999999999999999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHh
Q psy13014 156 LYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al~~ 176 (229)
.|... ++++|++++.+|+..
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH
Confidence 99999 999999999999987
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=78.72 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.+-...+.+.+|..++..|++++|+..|+.++...|+. .....+...+|.+ ++..|++++|+..++. +.-.
T Consensus 44 s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~--~l~~~a~l~LA~~------~~~~~~~d~Al~~L~~-~~~~ 114 (145)
T PF09976_consen 44 SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP--ELKPLARLRLARI------LLQQGQYDEALATLQQ-IPDE 114 (145)
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH--HHHHHHHHHHHHH------HHHcCCHHHHHHHHHh-ccCc
Confidence 34457788899999999999999999999999987543 2246678889999 9999999999999966 4444
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
+-.+.++..+|.++...|++++|+..|++++
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 5567788889999999999999999999874
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-09 Score=82.12 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.+..+|..|...+.. |++.+|+..|++.+... ...+..+.+.+.+|.+++..|++.+|+..+++.+
T Consensus 4 ~~~~lY~~a~~~~~~-g~y~~Ai~~f~~l~~~~-------------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 4 TAEALYQKALEALQQ-GDYEEAIKLFEKLIDRY-------------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp -HHHHHHHHHHHHHC-T-HHHHHHHHHHHHHH--------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHC-------------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457899999999999 99999999999887432 2455677889999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHhHhhhhhhhHH-----hhccCChHHHHHHHHHHHhcCCCcHH-----------------HHHHH
Q psy13014 96 RSCPRSCSVSRAVFYANRSAALEKLAS-----YLSLEKPDQSILACSKAITLNPSYLK-----------------VYQRR 153 (229)
Q Consensus 96 ~~~p~~~~~~~~~~~~~lg~~~~~~~~-----~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~l 153 (229)
+..|++.. .+.+++.+|.+..++.. ....+...+|+..|+..+...|++.. --+..
T Consensus 70 ~~yP~~~~--~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~i 147 (203)
T PF13525_consen 70 KLYPNSPK--ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYI 147 (203)
T ss_dssp HH-TT-TT--HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCcc--hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998743 46788888888222221 12233456899999999999999832 13346
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 154 ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 154 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
|..|.+.|.+..|+..++.+++..|+.+..-..+..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l 184 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL 184 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence 8889999999999999999999999988654444433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.19 E-value=9e-11 Score=76.58 Aligned_cols=97 Identities=32% Similarity=0.443 Sum_probs=89.1
Q ss_pred HHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 109 ~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
+++.+|.+ +...|++++|+..++++++..|.+..+++.+|.++...|++++|+..+++++...|.+...+..++
T Consensus 2 ~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 2 ALLNLGNL------YYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHH------HHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence 46788999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHhhhhhccccccccc-ccC
Q psy13014 189 VSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
.++ ...++..+|...+..++ ..|
T Consensus 76 ~~~-~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 76 LAY-YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHH-HHHHhHHHHHHHHHHHHccCC
Confidence 998 78888888888887776 554
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.9e-10 Score=96.25 Aligned_cols=173 Identities=16% Similarity=0.129 Sum_probs=132.3
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
.++++.+|++...++..-.+.+.. .+++.|...|.++. .......+|+.-+....-+++.++
T Consensus 608 ~~af~~~pnseeiwlaavKle~en-~e~eraR~llakar-----------------~~sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 608 DQAFEANPNSEEIWLAAVKLEFEN-DELERARDLLAKAR-----------------SISGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHHHhCCCcHHHHHHHHHHhhcc-ccHHHHHHHHHHHh-----------------ccCCcchhhHHHhHHHHHhhhHHH
Confidence 455566666666666655555555 56666666555544 334456677888888888899999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
|+..++++++.+|.. ..+|..+|.+ +.++++.+.|.+.|...++..|+.+..|..++.+-...|..-+|
T Consensus 670 A~rllEe~lk~fp~f-----~Kl~lmlGQi------~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDF-----HKLWLMLGQI------EEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHHHHHHHHHhCCch-----HHHHHHHhHH------HHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 999999999999988 8889999999 88889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 167 LADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 167 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
...++++.-.+|.+...|...-++. .+.+....|.....+++
T Consensus 739 R~ildrarlkNPk~~~lwle~Ir~E-lR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 739 RSILDRARLKNPKNALLWLESIRME-LRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 9999999999999988888777665 55555444444444444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.16 E-value=8e-10 Score=76.18 Aligned_cols=112 Identities=9% Similarity=0.093 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+..++..|..+... |++++|...|++.+... ...+..+.+++.+|.++...|++++|+..|+.++.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 67 (119)
T TIGR02795 2 EEAYYDAALLVLKA-GDYADAIQAFQAFLKKY-------------PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK 67 (119)
T ss_pred cHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC-------------CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45788999999999 99999999998887211 12233467899999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
.+|++.. .+.++..+|.+ +..+|++++|+..+++++...|++..+.
T Consensus 68 ~~p~~~~--~~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 68 KYPKSPK--APDALLKLGMS------LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HCCCCCc--ccHHHHHHHHH------HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 9887521 16789999999 9999999999999999999999987643
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=87.46 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=115.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy13014 22 FSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 22 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (229)
-.|..++.. |++..|...|++++..+.+....-. ........-...++.+++.++.+++.|..|+...++++.++|+|
T Consensus 213 e~Gn~~fK~-gk~~~A~~~Yerav~~l~~~~~~~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 213 ERGNVLFKE-GKFKLAKKRYERAVSFLEYRRSFDE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HhhhHHHhh-chHHHHHHHHHHHHHHhhccccCCH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 356788888 9999999999988865442221110 00011222344678899999999999999999999999999999
Q ss_pred CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH-HHHHHHHHHhCC
Q psy13014 102 CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA-LADYQKILELDP 178 (229)
Q Consensus 102 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~~p 178 (229)
.-+++.+|.+ +..+|+|+.|+..|+++++++|.|-.+...+..+-.+...+.+. .+.|.+.+..-+
T Consensus 291 -----~KALyRrG~A------~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 -----VKALYRRGQA------LLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred -----hhHHHHHHHH------HHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999 99999999999999999999999999999999998888777654 777777765544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=71.90 Aligned_cols=68 Identities=29% Similarity=0.482 Sum_probs=64.1
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
+...+++++|+.++++++.++|+++..+..+|.++..+|++++|+..|+++++.+|+++.+....+.+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999999887765543
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-10 Score=99.20 Aligned_cols=162 Identities=14% Similarity=0.055 Sum_probs=140.2
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
-||++|.++||++..+.-..+..+... .+++.|....-... + ..........|...|..+...++
T Consensus 513 kCf~KAFeLDatdaeaaaa~adtyae~-~~we~a~~I~l~~~---q-----------ka~a~~~k~nW~~rG~yyLea~n 577 (1238)
T KOG1127|consen 513 KCFDKAFELDATDAEAAAASADTYAEE-STWEEAFEICLRAA---Q-----------KAPAFACKENWVQRGPYYLEAHN 577 (1238)
T ss_pred HHHHHHhcCCchhhhhHHHHHHHhhcc-ccHHHHHHHHHHHh---h-----------hchHHHHHhhhhhccccccCccc
Confidence 379999999999999999999999999 89988877532211 1 01112334556679999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 163 (229)
+.+|+..|+.+++.+|.+ ..+|..+|.+ |...|++.-|++.|.++..++|.+.-+-+-.|.+...+|+|
T Consensus 578 ~h~aV~~fQsALR~dPkD-----~n~W~gLGeA------Y~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 578 LHGAVCEFQSALRTDPKD-----YNLWLGLGEA------YPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred hhhHHHHHHHHhcCCchh-----HHHHHHHHHH------HHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhH
Confidence 999999999999999999 9999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 164 DEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 164 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+|+..+...+............++.++
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ 674 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESV 674 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999999988777777777777665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.2e-09 Score=73.89 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+..++..|...++.|+|.+|++.|+......|...- ...+...+|.+ |+..+++++|+..+++-|+++|.+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y--a~qAqL~l~ya------yy~~~~y~~A~a~~~rFirLhP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY--AEQAQLDLAYA------YYKQGDYEEAIAAYDRFIRLHPTH 80 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc--cHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhCCCC
Confidence 4567899999999999999999999999999986522 26788999999 999999999999999999999988
Q ss_pred H---HHHHHHHHHHHhccc---------------HHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 147 L---KVYQRRARLYQQSDK---------------LDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 147 ~---~~~~~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
+ .+++..|.+++.... ..+|...|++.+...|+...+-...
T Consensus 81 p~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred CCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 5 479999999999877 8999999999999999988765443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=84.94 Aligned_cols=123 Identities=15% Similarity=0.102 Sum_probs=96.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc---HHHHHHHHHHHH
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY---LKVYQRRARLYQ 158 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 158 (229)
..|..+...+...++..+.. ....+++.+|.+ +...|++++|+..|++++.+.|+. +.++.++|.++.
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~g~~------~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~ 83 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGE---KEAFTYYRDGMS------AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT 83 (168)
T ss_pred cccccchhhhhHhccCCchh---HHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 34555555554444443332 247889999999 999999999999999999987763 458999999999
Q ss_pred hcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchH-------HHhhhh-------hccccccccc-ccCCC
Q psy13014 159 QSDKLDEALADYQKILELDPNNRDAYVATKVSPDL-------KLKEKN-------GATKLSPDVF-LHPGQ 214 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-------~~~~~~-------~a~~~~~~~~-~~p~~ 214 (229)
..|++++|+..+++++.++|.....+.+++.++ . .++++. +++..+.+++ .+|.+
T Consensus 84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~-~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 84 SNGEHTKALEYYFQALERNPFLPQALNNMAVIC-HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999999999999999999999888 4 444444 5666666777 77744
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-09 Score=92.60 Aligned_cols=160 Identities=18% Similarity=0.196 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.++|..+.-.+.. ++|.......+..+ ...|+.++.+...|..+..+|+-++|..+...+++.
T Consensus 8 ~~lF~~~lk~yE~-kQYkkgLK~~~~iL----------------~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 8 NALFRRALKCYET-KQYKKGLKLIKQIL----------------KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHHHHHHH-HHHHhHHHHHHHHH----------------HhCCccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence 4566666667777 77877777666555 577889999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
++.+ ..+|..+|.+ +....+|++||.+|..|+.++|+|...|.-++....++++++-....-.+.+++.
T Consensus 71 d~~S-----~vCwHv~gl~------~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 71 DLKS-----HVCWHVLGLL------QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred Cccc-----chhHHHHHHH------HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 9999 9999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHhccCchHHHhhhhhcccccc
Q psy13014 178 PNNRDAYVATKVSPDLKLKEKNGATKLSP 206 (229)
Q Consensus 178 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 206 (229)
|.....|..+++.. --.+++..|....+
T Consensus 140 ~~~ra~w~~~Avs~-~L~g~y~~A~~il~ 167 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQ-HLLGEYKMALEILE 167 (700)
T ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999887 55666555554443
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-09 Score=86.20 Aligned_cols=118 Identities=28% Similarity=0.432 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
...+.+.-+...|+.|++.++|..|+.+|.++|+....+ .+..+.+|.|+|.| .+.+|+|..|+..+.+++.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D-~dlnavLY~NRAAa------~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCAD-PDLNAVLYTNRAAA------QLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCC-ccHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHhc
Confidence 445788899999999999999999999999999986543 22347899999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
+|.+.+++++-|.|+..++++++|+.+++..++++-+...+....
T Consensus 149 ~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 149 KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 999999999999999999999999999999988876665554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-09 Score=82.85 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc---
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY--- 146 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--- 146 (229)
-.+..|..++..|+|..|...|...++..|++.. .+.++++||.+ ++.+|+|+.|...|..+++-.|++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~--~~nA~yWLGe~------~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY--TPNAYYWLGES------LYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc--cchhHHHHHHH------HHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 3899999999999999999999999999998632 38899999999 999999999999999999998876
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
+++++.+|.+...+|+.++|...|+++++..|+...+......
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 5789999999999999999999999999999999887665443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-10 Score=72.08 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=60.7
Q ss_pred hccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 124 LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 124 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 568999999999999999999999999999999999999999999999999999999888776653
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-08 Score=79.74 Aligned_cols=164 Identities=13% Similarity=0.028 Sum_probs=125.9
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
..+..+|..|...+.. |++++|+..|++.+... ...+....+.+.+|.++++.+++++|+..+++.
T Consensus 30 ~~~~~~Y~~A~~~~~~-g~y~~Ai~~f~~l~~~y-------------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 30 NPPSEIYATAQQKLQD-GNWKQAITQLEALDNRY-------------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-------------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4567788999999998 99999999998887322 233455567799999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC---------------C---hHHHHHHHHHHHhcCCCcHH---H----
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLE---------------K---PDQSILACSKAITLNPSYLK---V---- 149 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~---~---- 149 (229)
++.+|++.. .+.+++.+|.+ +..++ + ..+|+..+++.++..|++.- +
T Consensus 96 i~~~P~~~~--~~~a~Y~~g~~------~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 96 IRLNPTHPN--IDYVLYMRGLT------NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred HHhCcCCCc--hHHHHHHHHHh------hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 999998743 37778888888 54443 1 35788999999999998832 1
Q ss_pred ----------HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH---HHHHhccCchHHHhhhhhc
Q psy13014 150 ----------YQRRARLYQQSDKLDEALADYQKILELDPNNRD---AYVATKVSPDLKLKEKNGA 201 (229)
Q Consensus 150 ----------~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~~a 201 (229)
-+..|..|.+.|.|.-|+.-++.+++..|+.+. +...+...+ ..++...+|
T Consensus 168 ~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay-~~lg~~~~a 231 (243)
T PRK10866 168 VFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAY-RQLQLNAQA 231 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH-HHcCChHHH
Confidence 234577789999999999999999999998665 444444444 444443333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-09 Score=87.00 Aligned_cols=140 Identities=13% Similarity=0.034 Sum_probs=75.7
Q ss_pred chhhc---ccCCchHHHHHHHHHHHHHhh--hh------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy13014 6 YQQEL---SKNPSFLYTIYFSCFILFILF--SE------IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDE 74 (229)
Q Consensus 6 ~~~~l---~~~p~~~~~~~~~~~~~~~~~--~~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (229)
|.+++ +++|++..++..++++++... |. ..++....++++ ..++.++.++..+
T Consensus 281 f~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv----------------eld~~Da~a~~~~ 344 (458)
T PRK11906 281 FDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS----------------DITTVDGKILAIM 344 (458)
T ss_pred HHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH----------------hcCCCCHHHHHHH
Confidence 67888 899999999999998887651 11 111111122222 3445555555555
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
|.+....++++.|+..|++|+.++|+. +.+|+..|.+ ....|+.++|+++++++++++|....+-...-
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L~Pn~-----A~~~~~~~~~------~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIHSTDI-----ASLYYYRALV------HFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhcCCcc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 555555555555555555555555555 5555555555 55555555555555555555555444433333
Q ss_pred HH-HHhcccHHHHHHHHHH
Q psy13014 155 RL-YQQSDKLDEALADYQK 172 (229)
Q Consensus 155 ~~-~~~~~~~~~A~~~~~~ 172 (229)
++ .+-....+.|+..|-+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHcCCchhhhHHHHhh
Confidence 33 3333444455554433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.3e-09 Score=72.52 Aligned_cols=99 Identities=17% Similarity=0.083 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC---
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS--- 145 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--- 145 (229)
.+++..|.++-..|+.++|+..|++++...... ..+..++..+|.+ +..+|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~--~~~~~a~i~last------lr~LG~~deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG--ADRRRALIQLAST------LRNLGRYDEALALLEEALEEFPDDEL 73 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCCCccc
Confidence 468899999999999999999999999975443 2356789999999 99999999999999999999888
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
+......++.++...|+.++|+..+-.++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888899999999999999999988775
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.3e-09 Score=84.97 Aligned_cols=117 Identities=20% Similarity=0.206 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc--
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD-- 161 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-- 161 (229)
.++-+.-.+..+..+|++ +.-|..||.+ |+.+|++..|...|.+|+++.|+++..+..+|.++....
T Consensus 138 ~~~l~a~Le~~L~~nP~d-----~egW~~Lg~~------ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 138 MEALIARLETHLQQNPGD-----AEGWDLLGRA------YMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred HHHHHHHHHHHHHhCCCC-----chhHHHHHHH------HHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 567777888899999999 9999999999 999999999999999999999999999999999988654
Q ss_pred -cHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 162 -KLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 162 -~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
...++...+++++.+||++..+...++..+ ...+++.+|...++.++ ..|
T Consensus 207 ~~ta~a~~ll~~al~~D~~~iral~lLA~~a-fe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 207 QMTAKARALLRQALALDPANIRALSLLAFAA-FEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred cccHHHHHHHHHHHhcCCccHHHHHHHHHHH-HHcccHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999998 88899999999999999 666
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.4e-10 Score=83.98 Aligned_cols=101 Identities=27% Similarity=0.403 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..+.-+...|+.++..+.|..|+.+|.++|.++|.. +..|.+.+.| ++++++++.+...+.+++++.|+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~-----~~Y~tnralc------hlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV-----ASYYTNRALC------HLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc-----chhhhhHHHH------HHHhhhhhhhhhhHHHHHhcChH
Confidence 344556788999999999999999999999999998 9999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
.+.+++.+|.++.....|++||..+.++.++.
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999997653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.8e-09 Score=85.31 Aligned_cols=141 Identities=15% Similarity=0.019 Sum_probs=115.8
Q ss_pred HHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc---------cCHHHHH
Q psy13014 20 IYFSCFILFIL--FSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL---------NQWSESL 88 (229)
Q Consensus 20 ~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~A~ 88 (229)
.+..|...... ......|...|.+++.. ...+|..+.++..++.+++.. ..-.+|.
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-------------~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~ 324 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNK-------------SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKAL 324 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhc-------------ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 36666655433 12345555666666521 246678888888888888764 3457888
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
+..+++++++|.+ +.++..+|.+ ....++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|+.
T Consensus 325 ~~A~rAveld~~D-----a~a~~~~g~~------~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 325 ELLDYVSDITTVD-----GKILAIMGLI------TGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHhcCCCC-----HHHHHHHHHH------HHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999 9999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHH
Q psy13014 169 DYQKILELDPNNRDAY 184 (229)
Q Consensus 169 ~~~~al~~~p~~~~~~ 184 (229)
.++++++++|.-..+-
T Consensus 394 ~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 394 CIDKSLQLEPRRRKAV 409 (458)
T ss_pred HHHHHhccCchhhHHH
Confidence 9999999999765543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.1e-09 Score=75.56 Aligned_cols=117 Identities=6% Similarity=-0.086 Sum_probs=102.3
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
+.+......+.++.....|..|.-++.. |++++|...|.-.. .-++.++..+..+|.++..++
T Consensus 23 G~tlk~l~gis~~~le~iY~~Ay~~y~~-Gk~~eA~~~F~~L~----------------~~d~~n~~Y~~GLaa~~Q~~k 85 (165)
T PRK15331 23 GATLKDVHGIPQDMMDGLYAHAYEFYNQ-GRLDEAETFFRFLC----------------IYDFYNPDYTMGLAAVCQLKK 85 (165)
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcCcHHHHHHHHHHHHHHH
Confidence 3455566778889999999999999999 99999999996544 355777889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
+|++|+..|-.+..+++++ +...+..|.| ++.+|+.+.|...|..++. .|.+..
T Consensus 86 ~y~~Ai~~Y~~A~~l~~~d-----p~p~f~agqC------~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 86 QFQKACDLYAVAFTLLKND-----YRPVFFTGQC------QLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHHHHHHHHHcccCC-----CCccchHHHH------HHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 9999999999999999988 8889999999 9999999999999999998 455433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=68.00 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=62.1
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL 156 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 156 (229)
++..|++++|+..|++++..+|++ ..++..+|.| ++..|++++|...+++++..+|+++..+..++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~------~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN-----PEARLLLAQC------YLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS-----HHHHHHHHHH------HHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 357899999999999999999999 9999999999 9999999999999999999999998888777653
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.1e-09 Score=85.53 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=96.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 111 (229)
++++.|...+++.. .. ++.....++.++...++-.+|+..+++++...|.+ ..++.
T Consensus 183 ~~~~~ai~lle~L~----------------~~---~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-----~~LL~ 238 (395)
T PF09295_consen 183 QRYDEAIELLEKLR----------------ER---DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD-----SELLN 238 (395)
T ss_pred ccHHHHHHHHHHHH----------------hc---CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-----HHHHH
Confidence 56666666666654 22 24456678888888888889999999999888888 88888
Q ss_pred hHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 112 ~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
..+.. +...++++.|+...+++++..|++..+|+.+|.+|..+|+++.|+..+..+--..+.+.......
T Consensus 239 ~Qa~f------Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~~~ 308 (395)
T PF09295_consen 239 LQAEF------LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLKRP 308 (395)
T ss_pred HHHHH------HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhhcC
Confidence 88888 88888889999999999999998888999999999999999988877765544433443343333
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-10 Score=71.76 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=68.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 111 (229)
|+++.|+..+++.+...+ ..+ +...++.+|.++++.|+|++|+..+++ ...+|.+ ...++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~-------------~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-----~~~~~ 62 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDP-------------TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-----PDIHY 62 (84)
T ss_dssp T-HHHHHHHHHHHHHHHC-------------GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-----HHHHH
T ss_pred ccHHHHHHHHHHHHHHCC-------------CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-----HHHHH
Confidence 789999999998883211 122 677888899999999999999999999 7788877 88888
Q ss_pred hHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 112 NRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 112 ~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
.+|.| ++.+|++++|+.+++++
T Consensus 63 l~a~~------~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARC------LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHH------HHHTT-HHHHHHHHHHH
T ss_pred HHHHH------HHHhCCHHHHHHHHhcC
Confidence 89999 99999999999999875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=91.04 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC--------ChHHHHHH
Q psy13014 67 TAISLKDEGNALFRLNQ---WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE--------KPDQSILA 135 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--------~~~~A~~~ 135 (229)
.+..++..|..+...+. ..+|+.+|+++++++|++ +.++..++.+ +.... +...+.+.
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~-----a~a~A~la~~------~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF-----TYAQAEKALA------DIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHHHhcCCccHHHHHHHHHH
Confidence 45566777877766544 889999999999999999 9999988887 54432 23455666
Q ss_pred HHHHHhc--CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 136 CSKAITL--NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 136 ~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
..+++.+ +|.++.++.-+|..+...|++++|...+++++.++|+ ..++..+|.++ ...|+..+|...+.+++ ++|
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~-~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY-ELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCC
Confidence 6676664 7788889999999999999999999999999999995 78999999999 89999999999999999 999
Q ss_pred CCc
Q psy13014 213 GQP 215 (229)
Q Consensus 213 ~~~ 215 (229)
.++
T Consensus 485 ~~p 487 (517)
T PRK10153 485 GEN 487 (517)
T ss_pred CCc
Confidence 654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-08 Score=73.51 Aligned_cols=134 Identities=19% Similarity=0.089 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+.....+.........++...+...++..+..+|+.. ....+.+.+|.+ ++..|++++|+..|++++...|+
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~--ya~~A~l~lA~~------~~~~g~~~~A~~~l~~~~~~~~d 80 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP--YAALAALQLAKA------AYEQGDYDEAKAALEKALANAPD 80 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhhCCC
Confidence 3344555556666679999999999999999988762 225678889999 99999999999999999998866
Q ss_pred c---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 146 Y---LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 146 ~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
. ..+.+++|.++...|++++|+..++. +.-.+-.+.++..+|.++ ...++..+|...|.+++
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~-~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY-LAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH-HHCCCHHHHHHHHHHhC
Confidence 5 45788999999999999999999966 444555667888999999 88999999998887653
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=87.51 Aligned_cols=168 Identities=17% Similarity=0.100 Sum_probs=111.8
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
.++......|.++... |++++|...+.+. .+.+.....-.++..+++++.|.+.++..
T Consensus 100 ~~~~~~~~~A~i~~~~-~~~~~AL~~l~~~---------------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 100 SNEIVQLLAATILFHE-GDYEEALKLLHKG---------------------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHHHHHHCCC-CHHHHHHCCCTTT---------------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHc-CCHHHHHHHHHcc---------------------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455566666666666 7777777655332 23344555667888899999999998888
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLE--KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
-+.+++. .......|.+ .+..| .+.+|...|++.....|.++..+..+|.++..+|+|++|.+.+.+
T Consensus 158 ~~~~eD~-----~l~qLa~awv------~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~ 226 (290)
T PF04733_consen 158 QQIDEDS-----ILTQLAEAWV------NLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEE 226 (290)
T ss_dssp HCCSCCH-----HHHHHHHHHH------HHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HhcCCcH-----HHHHHHHHHH------HHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7776665 3333333334 33333 688999999998887788888888899999999999999999999
Q ss_pred HHHhCCCcHHHHHHhccCchHHHhhhhh-ccccccccc-ccCCCcc
Q psy13014 173 ILELDPNNRDAYVATKVSPDLKLKEKNG-ATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 173 al~~~p~~~~~~~~l~~~~~~~~~~~~~-a~~~~~~~~-~~p~~~~ 216 (229)
++..+|.+++...++..+. ..+++-.+ +.+.+..+. .+|+++.
T Consensus 227 al~~~~~~~d~LaNliv~~-~~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 227 ALEKDPNDPDTLANLIVCS-LHLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HCCC-CCHHHHHHHHHHHH-HHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HHHhccCCHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHhCCCChH
Confidence 9999999999888888776 55555423 333333333 5565443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.8e-09 Score=67.13 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=64.9
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
..++.+.+++++|+.++++++.++|.+ +..+..+|.+ +..+|++++|++.++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~~a~~------~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD-----PELWLQRARC------LFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc-----chhhHHHHHH------HHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 567899999999999999999999999 9999999999 99999999999999999999999988766554
Q ss_pred H
Q psy13014 155 R 155 (229)
Q Consensus 155 ~ 155 (229)
.
T Consensus 71 ~ 71 (73)
T PF13371_consen 71 M 71 (73)
T ss_pred h
Confidence 3
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.8e-10 Score=90.81 Aligned_cols=111 Identities=30% Similarity=0.471 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
.+-..+...+..+.|+.|+..|.++++++|++ +.++.+++.+ +.+.+++..|+..+.+|++.+|...++
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnc-----a~~~anRa~a------~lK~e~~~~Al~Da~kaie~dP~~~K~ 74 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNC-----AIYFANRALA------HLKVESFGGALHDALKAIELDPTYIKA 74 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcc-----eeeechhhhh------heeechhhhHHHHHHhhhhcCchhhhe
Confidence 34567888889999999999999999999999 9999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|++.|.+...++++.+|...|++...+.|+++.+...+..|.
T Consensus 75 Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 75 YVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred eeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888775
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=88.02 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=62.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV---YQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
+..|+++|.+ ++.+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 75 a~a~~NLG~A------L~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 75 AEDAVNLGLS------LFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999 999999999999999999999999854 9999999999999999999999999983
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-08 Score=80.18 Aligned_cols=108 Identities=12% Similarity=0.032 Sum_probs=92.4
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH---HHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 17 LYTIYFSCFIL-FILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQ---TAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 17 ~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
....|..+..+ +.. |++++|+..|++++ ...|+ .+.+++.+|.+++..|++++|+..|.
T Consensus 142 e~~~Y~~A~~l~~~~-~~y~~Ai~af~~fl----------------~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~ 204 (263)
T PRK10803 142 ANTDYNAAIALVQDK-SRQDDAIVAFQNFV----------------KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFA 204 (263)
T ss_pred HHHHHHHHHHHHHhc-CCHHHHHHHHHHHH----------------HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 46677787776 445 89999999998888 34443 46899999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
+++...|++.. .+++++.+|.+ +..+|++++|+..|+++++..|++..+
T Consensus 205 ~vv~~yP~s~~--~~dAl~klg~~------~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 205 SVVKNYPKSPK--AADAMFKVGVI------MQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHCCCCcc--hhHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999987532 38889999999 999999999999999999999998653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=79.41 Aligned_cols=109 Identities=17% Similarity=0.132 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.+.+.+..++..|..|-..|-+.-|.-.|.+++.+.|+. +.+++.+|.. +...|+|+.|.+.|+.++++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m-----~~vfNyLG~Y------l~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIY------LTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc-----HHHHHHHHHH------HHhcccchHHHHHhhhHhcc
Confidence 456788899999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
+|...-++.+.|..+...|++.-|.+.+.+-.+-||+||-
T Consensus 129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999985
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-08 Score=76.17 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
.++..++..|..++..|+|.+|+..|++.+...|.+.- ...+.+.+|.+ ++..|+++.|+..+++.++..|+
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~--a~~A~l~la~a------~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY--APQAQLMLAYA------YYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT--HHHHHHHHHHH------HHHTT-HHHHHHHHHHHHHH-TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCCC
Confidence 45678999999999999999999999999999997632 37789999999 99999999999999999999998
Q ss_pred cH---HHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 146 YL---KVYQRRARLYQQSD-----------KLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 146 ~~---~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
++ .+++.+|.++.... ...+|+..|+..+...|+.+.+..
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~ 128 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE 128 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH
Confidence 74 58999999976653 356899999999999999876543
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=76.91 Aligned_cols=117 Identities=30% Similarity=0.386 Sum_probs=100.0
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCCc-----hhhHHHHHhHhhhhhhhHHhhccCC
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS--------CPRSCS-----VSRAVFYANRSAALEKLASYLSLEK 128 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~~ 128 (229)
........++...|+-++..|+|.+|...|..|+.. .|.... .....++.|.+.| ++..|+
T Consensus 172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC------~L~~~e 245 (329)
T KOG0545|consen 172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQC------LLKKEE 245 (329)
T ss_pred hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHH------HhhHHH
Confidence 344556678999999999999999999999998754 232210 1235678999999 999999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
|-++++++...+...|.+.++++..|.++...-+.++|...|.++++++|.-..+.
T Consensus 246 ~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 246 YYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 99999999999999999999999999999999999999999999999999876543
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-08 Score=67.36 Aligned_cols=106 Identities=22% Similarity=0.269 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+....+-..|......|+.+.|++.|.+++.+.|.. +.+|++++.+ +.-+|+.++|+..+++++++..+
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r-----aSayNNRAQa------~RLq~~~e~ALdDLn~AleLag~ 109 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPER-----ASAYNNRAQA------LRLQGDDEEALDDLNKALELAGD 109 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc-----hHhhccHHHH------HHHcCChHHHHHHHHHHHHhcCc
Confidence 344566778899999999999999999999999998 9999999999 99999999999999999999765
Q ss_pred cHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 146 YLK----VYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 146 ~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
... ++...|.+|...|+-+.|...|+.+-++...+..
T Consensus 110 ~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr 150 (175)
T KOG4555|consen 110 QTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAR 150 (175)
T ss_pred cchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHH
Confidence 543 6888999999999999999999999988765543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.9e-08 Score=76.59 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..+..++..|..++..|+|++|+..|++++...|.. .....+.+++|.+ +++.+++++|+..+++.++..|+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s--~~a~~a~l~la~a------yy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG--PYSQQVQLDLIYA------YYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhCcC
Confidence 456678899999999999999999999999999987 2234456899999 99999999999999999999988
Q ss_pred c---HHHHHHHHHHHHhcc------------------cHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 146 Y---LKVYQRRARLYQQSD------------------KLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 146 ~---~~~~~~la~~~~~~~------------------~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
+ +.+++.+|.++...+ ...+|+..|++.++..|+..-+-
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~ 161 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTT 161 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHH
Confidence 7 457999998875543 24578999999999999876543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-08 Score=79.93 Aligned_cols=142 Identities=11% Similarity=0.070 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc--CHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN--QWSESLAKYN 92 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~ 92 (229)
++.+.......++..+ ++.+.|...+++.. ....+..-+....+.+.+..| .+.+|...|+
T Consensus 129 ~~lE~~al~Vqi~L~~-~R~dlA~k~l~~~~----------------~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 129 GSLELLALAVQILLKM-NRPDLAEKELKNMQ----------------QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp TCHHHHHHHHHHHHHT-T-HHHHHHHHHHHH----------------CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CcccHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 5678888888899999 99999988886654 222233333344444444444 6999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH-HHHHHHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL-DEALADYQ 171 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~ 171 (229)
+.....+.+ +.+...++.| ++.+|+|++|...+.+++..+|+++.++.++..+...+|+. +.+.+.+.
T Consensus 192 El~~~~~~t-----~~~lng~A~~------~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 192 ELSDKFGST-----PKLLNGLAVC------HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp HHHCCS--S-----HHHHHHHHHH------HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHhccCCC-----HHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 988877777 8999999999 99999999999999999999999999999999999999998 66778888
Q ss_pred HHHHhCCCcHHHH
Q psy13014 172 KILELDPNNRDAY 184 (229)
Q Consensus 172 ~al~~~p~~~~~~ 184 (229)
+....+|+++-..
T Consensus 261 qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 261 QLKQSNPNHPLVK 273 (290)
T ss_dssp HCHHHTTTSHHHH
T ss_pred HHHHhCCCChHHH
Confidence 8888999988654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-08 Score=72.11 Aligned_cols=103 Identities=20% Similarity=0.227 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS----LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 159 (229)
|+.|.+.++.....+|.+ ++.+++-|.++..++.+.. ...+++|+.-|++||.++|+...+++.+|.+|..
T Consensus 7 FE~ark~aea~y~~nP~D-----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD-----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh-----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 678999999999999999 9999999999665554311 2357889999999999999999999999999987
Q ss_pred ccc-----------HHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 160 SDK-----------LDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 160 ~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+. |++|..+|++|+..+|++...+..|....
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 653 89999999999999999998888777553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-08 Score=77.24 Aligned_cols=174 Identities=14% Similarity=0.155 Sum_probs=117.3
Q ss_pred HHHH-HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 20 IYFS-CFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 20 ~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.|.. |..+... +++.+|...|.++...... ......-+..+...+.++.+. ++++|+.+|++++.+.
T Consensus 37 ~y~~Aa~~fk~~-~~~~~A~~ay~kAa~~~~~----------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y 104 (282)
T PF14938_consen 37 LYEKAANCFKLA-KDWEKAAEAYEKAADCYEK----------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIY 104 (282)
T ss_dssp HHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHH----------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hccchhHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH
Confidence 4444 5555555 8999999988887643221 123345556666666666555 9999999999999986
Q ss_pred CCCCch-hhHHHHHhHhhhhhhhHHhhcc-CChHHHHHHHHHHHhcCC--Cc----HHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 99 PRSCSV-SRAVFYANRSAALEKLASYLSL-EKPDQSILACSKAITLNP--SY----LKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 99 p~~~~~-~~~~~~~~lg~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
-..... .-+.++..+|.+ |... |++++|+++|.+|+.+.. +. ...+..+|.++..+|+|++|++.|
T Consensus 105 ~~~G~~~~aA~~~~~lA~~------ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 105 REAGRFSQAAKCLKELAEI------YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp HHCT-HHHHHHHHHHHHHH------HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHH------HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 443322 236678888888 8888 999999999999998732 12 346788999999999999999999
Q ss_pred HHHHHhCCCcH-------HHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 171 QKILELDPNNR-------DAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 171 ~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
++.....-+++ ..+...+.|+ ...++...|.+.+.+.. .+|
T Consensus 179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~-L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 179 EEVAKKCLENNLLKYSAKEYFLKAILCH-LAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHTCCCHCTTGHHHHHHHHHHHHHH-HHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCC
Confidence 99987543221 2223333343 66778888888777776 666
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.7e-08 Score=66.64 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+.++|.+|.++... |+.++|+..|++++... ...+....++..+|.++...|++++|+..+++++.
T Consensus 1 ~~~~~~~A~a~d~~-G~~~~Ai~~Y~~Al~~g-------------L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 1 PRALYELAWAHDSL-GREEEAIPLYRRALAAG-------------LSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred CchHHHHHHHHHhc-CCHHHHHHHHHHHHHcC-------------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35789999999999 99999999999987321 13456677999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
..|+... ...+...++.+ +...|++++|+..+-.++.
T Consensus 67 ~~p~~~~--~~~l~~f~Al~------L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 67 EFPDDEL--NAALRVFLALA------LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCccc--cHHHHHHHHHH------HHHCCCHHHHHHHHHHHHH
Confidence 9888210 16777888899 9999999999999988775
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.8e-07 Score=73.56 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=103.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRL-NQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
......-+..+..+|.++... |++++|+++|++|+.+...... .....++..+|.+ +..+|+|++|++.|++
T Consensus 107 ~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l------~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 107 AGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL------YARLGRYEEAIEIYEE 180 (282)
T ss_dssp CT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------HHHTT-HHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH------HHHhCCHHHHHHHHHH
Confidence 344556678999999999999 9999999999999998654322 3356778889999 9999999999999999
Q ss_pred HHhcCCC------cH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH--HHHhccC---ch-HHHhhhhhccccc
Q psy13014 139 AITLNPS------YL-KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA--YVATKVS---PD-LKLKEKNGATKLS 205 (229)
Q Consensus 139 al~~~p~------~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~l~~~---~~-~~~~~~~~a~~~~ 205 (229)
+....-+ +. ..++..+.|+...|++-.|...+++....+|..... ...+..+ +. .....+.+++.+|
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHH
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9875322 12 346678889999999999999999999999865432 1122222 21 2233377788888
Q ss_pred cccc-ccC
Q psy13014 206 PDVF-LHP 212 (229)
Q Consensus 206 ~~~~-~~p 212 (229)
..+. +||
T Consensus 261 d~~~~ld~ 268 (282)
T PF14938_consen 261 DSISRLDN 268 (282)
T ss_dssp TTSS---H
T ss_pred cccCccHH
Confidence 8877 665
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.1e-09 Score=65.66 Aligned_cols=65 Identities=25% Similarity=0.340 Sum_probs=57.0
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----CC---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN----PS---YLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
.+.++.++|.+ |..+|++++|+.+|++++++. ++ -+.++.++|.++...|++++|++++++++++
T Consensus 4 ~a~~~~~la~~------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARV------YRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 47889999999 999999999999999999762 22 2568999999999999999999999999876
|
... |
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.1e-08 Score=81.49 Aligned_cols=172 Identities=17% Similarity=0.161 Sum_probs=117.2
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSES 87 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 87 (229)
+.+...|++..+....-.++... ++|++|....++.. .........+..+.|+++.++.++|
T Consensus 37 Kil~~~pdd~~a~~cKvValIq~-~ky~~ALk~ikk~~-----------------~~~~~~~~~fEKAYc~Yrlnk~Dea 98 (652)
T KOG2376|consen 37 KILSIVPDDEDAIRCKVVALIQL-DKYEDALKLIKKNG-----------------ALLVINSFFFEKAYCEYRLNKLDEA 98 (652)
T ss_pred HHHhcCCCcHhhHhhhHhhhhhh-hHHHHHHHHHHhcc-----------------hhhhcchhhHHHHHHHHHcccHHHH
Confidence 45677889988888888888888 88888875443332 1112222236777888888888888
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC------------------------
Q psy13014 88 LAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------------------------ 143 (229)
Q Consensus 88 ~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------------------------ 143 (229)
+..++ ..++.+ ..+....|.+ ++++++|++|...|+..++.+
T Consensus 99 lk~~~---~~~~~~-----~~ll~L~AQv------lYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 99 LKTLK---GLDRLD-----DKLLELRAQV------LYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHHHh---cccccc-----hHHHHHHHHH------HHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 88877 334444 5566667777 777777888877777765432
Q ss_pred ------CC-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CCCcH-------HHHHHhccCchHHHhhhhhc
Q psy13014 144 ------PS-YLKVYQRRARLYQQSDKLDEALADYQKILEL--------DPNNR-------DAYVATKVSPDLKLKEKNGA 201 (229)
Q Consensus 144 ------p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~-------~~~~~l~~~~~~~~~~~~~a 201 (229)
|. +...+|+.|.++...|+|.+|++.+++++.+ +-+.. .+...++.++ ..+|+..+|
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl-Q~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL-QLQGQTAEA 243 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH-HHhcchHHH
Confidence 22 3456888899999999999999999998432 11111 2444555565 788888888
Q ss_pred cccccccc-ccC
Q psy13014 202 TKLSPDVF-LHP 212 (229)
Q Consensus 202 ~~~~~~~~-~~p 212 (229)
..-|...+ .+|
T Consensus 244 ~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 244 SSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHhcC
Confidence 88888777 666
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.9e-08 Score=81.19 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=108.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
-..+...++++.|+..+++..+.+|.. ...++.+ +...++..+|++.+.++++.+|.+...+...|
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~pev--------~~~LA~v------~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa 241 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERDPEV--------AVLLARV------YLLMNEEVEAIRLLNEALKENPQDSELLNLQA 241 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcCCcH--------HHHHHHH------HHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 344455788999999999999988753 4558888 88899999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccccccC
Q psy13014 155 RLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFLHP 212 (229)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~p 212 (229)
..+...++++.|+...++++++.|++...|+.|+.+| ..++++++|+-.++..=+.|
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y-i~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECY-IQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH-HhcCCHHHHHHHHhcCcCCC
Confidence 9999999999999999999999999999999999999 89999999987766543333
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.3e-09 Score=84.83 Aligned_cols=95 Identities=23% Similarity=0.251 Sum_probs=89.5
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
|+++|.|++||.+|.+++..+|.++..+.+.|.+|+++++|..|...+..++.++.....+|...+..- ..++...+|-
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR-~~Lg~~~EAK 185 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQAR-ESLGNNMEAK 185 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH-HHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998888776 8899999999
Q ss_pred ccccccc-ccCCCcccc
Q psy13014 203 KLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 203 ~~~~~~~-~~p~~~~~~ 218 (229)
++++.++ +.|++..+.
T Consensus 186 kD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 186 KDCETVLALEPKNIELK 202 (536)
T ss_pred HhHHHHHhhCcccHHHH
Confidence 9999999 999765544
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.5e-08 Score=77.72 Aligned_cols=170 Identities=12% Similarity=0.085 Sum_probs=95.5
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
+...+.+|.+.-++..+|.+|... .++..|..+|+... ...|+.....+..+..+++.+.+.+
T Consensus 34 ~s~~Er~p~~rAgLSlLgyCYY~~-Q~f~~AA~CYeQL~----------------ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 34 GSELERSPRSRAGLSLLGYCYYRL-QEFALAAECYEQLG----------------QLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHhcCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHH----------------hhChHHHHHHHHHHHHHHHhcccHH
Confidence 334567888888888889999888 88888888887766 4566777777777777777777777
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHhcccHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--SYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~ 164 (229)
|+......... |. .+..+...-+.+ .+..+++..+....++ -| +.+....+.|.+.++.|+++
T Consensus 97 ALrV~~~~~D~-~~----L~~~~lqLqaAI------kYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 97 ALRVAFLLLDN-PA----LHSRVLQLQAAI------KYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHHHHHhcCC-HH----HHHHHHHHHHHH------hcccccCcchHHHHHh----ccCCCccchhccchheeeccccHH
Confidence 77665433221 11 012222222333 3344444433322221 22 33444555555555555555
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.|++-|+.+++...-++-.-++++.+. .+.+++..|++...+++
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEII 205 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 555555555555555555555555444 44444455544444433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-08 Score=63.89 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC--chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC--SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
|..+.++..+|.++..+|+|++|+.+|++++.+..... ....+.++.++|.+ +..+|++++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~------~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGEC------YYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH------HHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhh
Confidence 56778999999999999999999999999998732111 12347889999999 99999999999999999876
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-08 Score=81.24 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=67.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHH---HHHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAV---FYANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
....|+++.+++++|.+++..|+|++|+..|++++.++|++ .. +|+++|.| |..+|++++|+++++
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~-----aeA~~A~yNLAca------ya~LGr~dEAla~Lr 136 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP-----DEAQAAYYNKACC------HAYREEGKKAADCLR 136 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHHHH------HHHcCCHHHHHHHHH
Confidence 34678899999999999999999999999999999999998 74 59999999 999999999999999
Q ss_pred HHHhcC
Q psy13014 138 KAITLN 143 (229)
Q Consensus 138 ~al~~~ 143 (229)
+|+++.
T Consensus 137 rALels 142 (453)
T PLN03098 137 TALRDY 142 (453)
T ss_pred HHHHhc
Confidence 999983
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.7e-07 Score=78.19 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
..++++.++..+...|++++|+++++++|...|.. ++.|...|.+ +.+.|++.+|.++.+.|..+++.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~-----~ely~~Kari------lKh~G~~~~Aa~~~~~Ar~LD~~D 261 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL-----VELYMTKARI------LKHAGDLKEAAEAMDEARELDLAD 261 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHhCChhh
Confidence 35778999999999999999999999999999999 9999999999 999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--c-----HHHHHH--hccCchHHHhhhhhccccccccc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPN--N-----RDAYVA--TKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~-----~~~~~~--l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
--.-...+..+.+.|+.++|...+..-..-+-+ . ...|+. .|.++ .+.+++..|++.|..+.
T Consensus 262 RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~-~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 262 RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY-LRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHH
Confidence 887778899999999999999998776555421 1 124443 34445 77888888888777665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-08 Score=80.62 Aligned_cols=196 Identities=13% Similarity=0.069 Sum_probs=129.4
Q ss_pred chhhcccCCchHH----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-------------------------
Q psy13014 6 YQQELSKNPSFLY----TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF------------------------- 56 (229)
Q Consensus 6 ~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------------------------- 56 (229)
|+.+++.-.++.. .+..+|-.++.+ ++|++|..+-..-+...+.+...++
T Consensus 40 f~aA~qvGTeDl~tLSAIYsQLGNAyfyL-~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc 118 (639)
T KOG1130|consen 40 FKAALQVGTEDLSTLSAIYSQLGNAYFYL-KDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCC 118 (639)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcchhhhH-hhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHH
Confidence 5667777776654 356678889888 9999998866433322222211111
Q ss_pred -----hhhhhhhHHHHHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHhCCCCCchh-hHHHH
Q psy13014 57 -----YLFCSQKLEQTAISLKDEGNALFRLNQ--------------------WSESLAKYNEALRSCPRSCSVS-RAVFY 110 (229)
Q Consensus 57 -----~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------------~~~A~~~~~~al~~~p~~~~~~-~~~~~ 110 (229)
.........-...+++++|++|...|+ ++.|+++|..-+++.....+.. ...++
T Consensus 119 ~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~ 198 (639)
T KOG1130|consen 119 FRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAY 198 (639)
T ss_pred HHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchh
Confidence 001122333566789999999988765 4566677776666654432211 24467
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCCc
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPS------YLKVYQRRARLYQQSDKLDEALADYQKILEL----DPNN 180 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~ 180 (229)
-++|.. |+-+|+|++||.+-+.-+.+... .-.++.++|.++..+|+++.|+++|+..+.+ ....
T Consensus 199 GnLGNT------yYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 199 GNLGNT------YYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred cccCce------eeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 777777 99999999999988877766422 2357889999999999999999999987644 3322
Q ss_pred H--HHHHHhccCchHHHhhhhhccccccccc
Q psy13014 181 R--DAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 181 ~--~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
. ..-+.++..+ .-++++++|+..+.+.+
T Consensus 273 vEAQscYSLgNty-tll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 273 VEAQSCYSLGNTY-TLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHHHHhhhHH-HHHHHHHHHHHHHHHHH
Confidence 2 3445666666 66777888877776655
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.2e-07 Score=72.74 Aligned_cols=186 Identities=15% Similarity=0.110 Sum_probs=147.6
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH--------HHHHHHHH------------------Hhhhh
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFY--------IQFIFHVL------------------FYLFC 60 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~------------------~~~~~ 60 (229)
.+++++.|.++.++-+...+|... |++.+......+.... .++-.... .|...
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~-g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRL-GAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHh-ccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 467889999999999999999999 9999888777544321 11111110 12233
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
+....+++......+.-+...|..++|.+....+++..-+ +.+...++.+ .-+++.+=++..++.+
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D------~~L~~~~~~l--------~~~d~~~l~k~~e~~l 321 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD------PRLCRLIPRL--------RPGDPEPLIKAAEKWL 321 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC------hhHHHHHhhc--------CCCCchHHHHHHHHHH
Confidence 4445566888888999999999999999999999998766 3455555544 7889999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 141 TLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 141 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+..|+++..+..+|..+.+.+.+.+|...|+.+++..|+.. .+..++.++ .+.++...|...+++++
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~-~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADAL-DQLGEPEEAEQVRREAL 388 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHH-HHcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998755 456888888 78888777777777665
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-08 Score=74.11 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=90.3
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL-----KVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
.-.-.-|.- ++..|+|++|..-|..||.+.|..+ ..|.+.|.++.+++.++.|+..+.++++++|.+..
T Consensus 96 d~lK~EGN~------~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 96 DSLKKEGNE------LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHH------hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 334445666 9999999999999999999998763 36888999999999999999999999999999999
Q ss_pred HHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 183 AYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
++...+.++ +++..+.+|+.+|.+++ .+|..-
T Consensus 170 Al~RRAeay-ek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 170 ALERRAEAY-EKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHHHHHHH-HhhhhHHHHHHHHHHHHHhCcchH
Confidence 999999999 89999999999999999 999554
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-07 Score=65.33 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+..++..|...+.. |++.+|+..|+......+ ..+-...+...+|.+++..+++++|+..+++-++
T Consensus 10 ~~~ly~~a~~~l~~-~~Y~~A~~~le~L~~ryP-------------~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 10 PQELYQEAQEALQK-GNYEEAIKQLEALDTRYP-------------FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCC-------------CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45788999999999 999999999987763322 3445667889999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCC---------------hHHHHHHHHHHHhcCCCcHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEK---------------PDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 149 (229)
++|.+.. ...+++.+|.+ ++.+.. ...|...|++++...|++..+
T Consensus 76 LhP~hp~--vdYa~Y~~gL~------~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 76 LHPTHPN--VDYAYYMRGLS------YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred hCCCCCC--ccHHHHHHHHH------HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9998843 36678888988 777665 889999999999999998654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.5e-07 Score=71.48 Aligned_cols=111 Identities=11% Similarity=0.115 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP 99 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 99 (229)
.|..+.-+... |++..|...|.+++... ...+..+.+++.+|++++.+|+|++|...|..+++-.|
T Consensus 144 ~Y~~A~~~~ks-gdy~~A~~~F~~fi~~Y-------------P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 144 LYNAALDLYKS-GDYAEAEQAFQAFIKKY-------------PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHcC-------------CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 78888888888 99999999999888332 25567788999999999999999999999999999998
Q ss_pred CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHH
Q psy13014 100 RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR 152 (229)
Q Consensus 100 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (229)
++.+ -++.++.+|.| ...+|+.++|-..++++++..|+...+-.-
T Consensus 210 ~s~K--ApdallKlg~~------~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 210 KSPK--APDALLKLGVS------LGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred CCCC--ChHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 7644 27899999999 999999999999999999999998776443
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.6e-07 Score=68.39 Aligned_cols=124 Identities=11% Similarity=0.124 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS-CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
..+..+.....+|.+..+.|+.+.|..+|+..-+....- .......+..+.+.+ +.-.+++..|...+.+.+.
T Consensus 207 ~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i------~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 207 YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL------HLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh------eecccchHHHHHHHhhccc
Confidence 346788889999999999999999999999554432110 001125677888888 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH---HHHHHhccCch
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR---DAYVATKVSPD 192 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~ 192 (229)
.+|.++.+..+.|.|+..+|+..+|++..+.++++.|... ....++..++.
T Consensus 281 ~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 281 MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE 334 (366)
T ss_pred cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999743 34455555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.7e-08 Score=72.08 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=96.8
Q ss_pred chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 103 SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 103 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
++.++..++.+|.. |-.+|-..-|.-.|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...+++||...-
T Consensus 61 ~eeRA~l~fERGvl------YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y 134 (297)
T COG4785 61 DEERAQLLFERGVL------YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 134 (297)
T ss_pred hHHHHHHHHHhcch------hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH
Confidence 34579999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 183 AYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
+..+.|... .-.+++.-|.+++...+ .||+++
T Consensus 135 a~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 135 AHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HHhccceee-eecCchHhhHHHHHHHHhcCCCCh
Confidence 999999887 67788888888888888 777553
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-06 Score=64.26 Aligned_cols=123 Identities=28% Similarity=0.334 Sum_probs=80.9
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC-CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC-cHHHHHHHH
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS-YLKVYQRRA 154 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la 154 (229)
++...++++.|...+.+++...|. .. ........+.. +...++++.|+..+.+++...+. ....+..++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNE---LAEALLALGAL------LEALGRYEEALELLEKALKLNPDDDAEALLNLG 209 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccc---hHHHHHHhhhH------HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhh
Confidence 677777777777777777665552 10 15555556666 66777777777777777777777 577777777
Q ss_pred HHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 155 RLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.++...+++++|+..+..++...|.....+..++..+. ..+....+...+.+.+
T Consensus 210 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 210 LLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL-ELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHH
Confidence 77777777777777777777777775555555555552 3333444444444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-06 Score=62.14 Aligned_cols=170 Identities=21% Similarity=0.259 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
.......+..+... +.+..+...+...... ...+.....+...|......+++..++..+.+++.
T Consensus 59 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (291)
T COG0457 59 AGLLLLLALALLKL-GRLEEALELLEKALEL--------------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALA 123 (291)
T ss_pred hHHHHHHHHHHHHc-ccHHHHHHHHHHHHhh--------------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444445555555 5555555555444311 14567777888999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhh-hhhhhHHhhccCChHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSA-ALEKLASYLSLEKPDQSILACSKAITLNP---SYLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~-~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
..+.. .......+. + +...|+++.|+..+.+++...| .....+...+..+...++++.++..+.+
T Consensus 124 ~~~~~-----~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 124 LDPDP-----DLAEALLALGA------LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred CCCCc-----chHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 88876 444455555 8 8999999999999999998777 4566777778888899999999999999
Q ss_pred HHHhCCC-cHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 173 ILELDPN-NRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 173 al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
++...+. ....+..++.++ ...++...+...+..++ ..|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 193 ALKLNPDDDAEALLNLGLLY-LKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHhhCcccchHHHHHhhHHH-HHcccHHHHHHHHHHHHhhCcc
Confidence 9999999 688888888887 66666777777777776 5543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.7e-07 Score=51.91 Aligned_cols=42 Identities=29% Similarity=0.400 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
.+++.+|.+|...|++++|+..|+++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356666666777777777777777777777777666666654
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-06 Score=66.17 Aligned_cols=147 Identities=10% Similarity=0.064 Sum_probs=73.0
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
.++...+...|.++..- +++++|........ +.++...--.++.++.+++-|....++
T Consensus 105 ~sn~i~~l~aa~i~~~~-~~~deAl~~~~~~~---------------------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 105 GSNLIDLLLAAIIYMHD-GDFDEALKALHLGE---------------------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred chhHHHHHHhhHHhhcC-CChHHHHHHHhccc---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777777 88888877664421 222222333444455555555555555
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
...++.+..-.-.+.+|..++.- -+....|.-+|++.-...|..+..+...+.|+..+|+|++|...++.+
T Consensus 163 mq~ided~tLtQLA~awv~la~g---------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 163 MQQIDEDATLTQLAQAWVKLATG---------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHccchHHHHHHHHHHHHHHhcc---------chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 55544332111112222222222 223455555555555544555555555555555555555555555555
Q ss_pred HHhCCCcHHHHHHhccCc
Q psy13014 174 LELDPNNRDAYVATKVSP 191 (229)
Q Consensus 174 l~~~p~~~~~~~~l~~~~ 191 (229)
+..++++++.+.|+-.+.
T Consensus 234 L~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLA 251 (299)
T ss_pred HhccCCCHHHHHHHHHHH
Confidence 555555555555554443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.6e-06 Score=78.04 Aligned_cols=129 Identities=12% Similarity=0.010 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--CC
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCP-RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--NP 144 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p 144 (229)
...+..+-..|.+.|++++|.+.|+...+... .+ ...|..+... |.+.|++++|+..|++..+. .|
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~-----~~tynsLI~a------y~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT-----PEVYTIAVNS------CSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-----hHHHHHHHHH------HHhcCCHHHHHHHHHHHHHcCCCC
Confidence 34566666677777777777777777766642 23 5667777777 77777778887777777665 34
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELD-PNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+..+|..+..++...|++++|.+.+....+.. +.+...+..+...+ -+.++..+|.+.|..+.
T Consensus 648 -D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay-~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 648 -DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC-SNAKNWKKALELYEDIK 711 (1060)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHH
Confidence 35667777777778888888888887777654 23455666666666 67777788877777664
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=74.45 Aligned_cols=101 Identities=26% Similarity=0.396 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.-....+...+..|.++.|++.|..++.++|.. +.+|..++.+ +++++....||..|+.+++++|+..
T Consensus 114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~-----a~l~~kr~sv------~lkl~kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPL-----AILYAKRASV------FLKLKKPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred HHHHHHHHHHHhcCcchhhhhcccccccccCCch-----hhhcccccce------eeeccCCchhhhhhhhhhccCcccc
Confidence 3344556677788999999999999999999999 9999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
..|-..|.+...+|++++|..++..+.+++-+
T Consensus 183 ~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 183 KGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred cccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999988754
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-07 Score=49.99 Aligned_cols=34 Identities=38% Similarity=0.584 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.7e-05 Score=61.00 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=120.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.+..+|..|...+.. |++.+|...|+.....- ...|-...+...++.++++.+++++|+...++-+
T Consensus 33 p~~~LY~~g~~~L~~-gn~~~A~~~fe~l~~~~-------------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi 98 (254)
T COG4105 33 PASELYNEGLTELQK-GNYEEAIKYFEALDSRH-------------PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFI 98 (254)
T ss_pred CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcC-------------CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 356789999999999 99999999998776221 2445667889999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHhHhhhhhhhHHhhccC--------ChHHHHHHHHHHHhcCCCcHH---------------H--H
Q psy13014 96 RSCPRSCSVSRAVFYANRSAALEKLASYLSLE--------KPDQSILACSKAITLNPSYLK---------------V--Y 150 (229)
Q Consensus 96 ~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~p~~~~---------------~--~ 150 (229)
++.|.+.+ ..-+++..|.+ ++..= --.+|+..++..+...|++.- + =
T Consensus 99 ~lyP~~~n--~dY~~YlkgLs------~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 99 RLYPTHPN--ADYAYYLKGLS------YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HhCCCCCC--hhHHHHHHHHH------HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 99998743 24556667777 54432 245788899999999998721 1 1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
...|..|.+.|.+.-|+.-++.+++..|+.+...-.+..+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ 211 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLE 211 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 23577788999999999999999999888776655555543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=59.02 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRS-CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
...-.+.+|+.....|++.+|..+|++++.- ...+ +.....++.+ .+..+++..|...+++..+.+|.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d-----~a~lLglA~A------qfa~~~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD-----AAMLLGLAQA------QFAIQEFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC-----HHHHHHHHHH------HHhhccHHHHHHHHHHHhhcCCc
Confidence 4456788999999999999999999999885 4455 8889999999 99999999999999999999875
Q ss_pred --cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccc
Q psy13014 146 --YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKL 204 (229)
Q Consensus 146 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 204 (229)
.+.....+|.++...|++++|...|+.+++..|+.. +....+..+ -+++...++...
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~L-a~qgr~~ea~aq 215 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEML-AKQGRLREANAQ 215 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHH-HHhcchhHHHHH
Confidence 477888999999999999999999999999999744 444444444 444444444333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.7e-07 Score=80.21 Aligned_cols=82 Identities=9% Similarity=0.087 Sum_probs=48.3
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCcHHHHHHhccCchHHHhhhhh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL--DPNNRDAYVATKVSPDLKLKEKNG 200 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~ 200 (229)
|.+.|+.++|...|++..+ .+..+|..+...|...|+.++|++.|++..+. .|+.. .+..+...+ .+.+..++
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~-~~~g~~~~ 444 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV-TFLAVLSAC-RYSGLSEQ 444 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHH-hcCCcHHH
Confidence 6666666666666665433 24556666777777777777777777766553 34333 333333344 45566666
Q ss_pred ccccccccc
Q psy13014 201 ATKLSPDVF 209 (229)
Q Consensus 201 a~~~~~~~~ 209 (229)
+.+.|..+.
T Consensus 445 a~~~f~~m~ 453 (697)
T PLN03081 445 GWEIFQSMS 453 (697)
T ss_pred HHHHHHHHH
Confidence 666666654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.7e-06 Score=76.28 Aligned_cols=127 Identities=10% Similarity=0.068 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-CCcH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCP-RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-PSYL 147 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 147 (229)
.+..+...+.+.|++++|...+....+... .+ ...|..+..+ |.+.|++++|+..|++..... ..+.
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd-----~~tynsLI~a------y~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLG-----TVSYSSLMGA------CSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 344444455555555555555555544321 11 4455555555 556666666666665554321 1234
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILEL--DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+|..+...|.+.|++++|++.|++.... .|+. ..+..+...+ .+.++..+|.+.+..+.
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~-~Ty~sLL~a~-~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNT-ITYSILLVAS-ERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH-HHCCCHHHHHHHHHHHH
Confidence 55556666666666666666666655433 2332 2333333344 44555555655555554
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.1e-06 Score=67.36 Aligned_cols=192 Identities=15% Similarity=0.120 Sum_probs=120.8
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-------------------------
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYL------------------------- 58 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------------------- 58 (229)
+.|++.++.||-|..+++-.-.+.-.. |+.+.-.+.|++++..++.......|.
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~-g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESV-GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhc-CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 568899999999999999988877777 999999999999886554332221110
Q ss_pred ---hhhhhHH----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHH
Q psy13014 59 ---FCSQKLE----QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131 (229)
Q Consensus 59 ---~~~~~~~----~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 131 (229)
.+...-| ..+.+|...|.....+.+...|...+-.|+-..|.+ .++-..-.+ -.++++++.
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~------KlFk~YIel------ElqL~efDR 455 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD------KLFKGYIEL------ELQLREFDR 455 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch------hHHHHHHHH------HHHHhhHHH
Confidence 1111111 233344445555555555555555555555555542 222222223 456777888
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH--HHHHhccCchHHHhhhhhccccccccc
Q psy13014 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD--AYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+...|++-|+-.|.+..+|...|..-..+|+.+.|...|+-|++...-+-. .|...-... -..+++++|...|++.+
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFE-i~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFE-IEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhh-hhcchHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888877766443322 222222222 44556777777777776
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.7e-06 Score=77.63 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
...+..+-..+...|..++|..+|+...+..+-..+ ...|..+..+ +.+.|+.++|.+.+++. ...| +.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~---~~~y~~li~~------l~r~G~~~eA~~~~~~~-~~~p-~~ 494 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR---AMHYACMIEL------LGREGLLDEAYAMIRRA-PFKP-TV 494 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC---ccchHhHHHH------HHhcCCHHHHHHHHHHC-CCCC-CH
Confidence 344555666677777777777777776653221100 4456667777 88888888888887763 2334 45
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+|..+..++...|+++.|...+++.+.++|++...+..+..++ .+.+++.+|.+.+..+.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y-~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY-NSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH-HhCCCHHHHHHHHHHHH
Confidence 67888888888999999999999999999999888888888887 77777777777766554
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=61.91 Aligned_cols=179 Identities=13% Similarity=0.139 Sum_probs=134.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh----hhhhH-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 23 SCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLF----CSQKL-EQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
-|.+.... |...++..-.......+........... ..... .......+.+..++...++|.-.+..+.+.+..
T Consensus 128 hAe~~~~l-gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~ 206 (366)
T KOG2796|consen 128 HAELQQYL-GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY 206 (366)
T ss_pred HHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 35555566 7777766655444332222222111111 11111 234456778889999999999999999999999
Q ss_pred CC-CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc----C--CCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 98 CP-RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL----N--PSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 98 ~p-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+| .. +.+...+|.+ -++.|+-+.|..+|+++-+. + .....++.+.+.++.-.+++..|...|
T Consensus 207 ~~e~~-----p~L~s~Lgr~------~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 207 YPEQE-----PQLLSGLGRI------SMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred CCccc-----HHHHHHHHHH------HHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 85 44 8899999999 99999999999999954432 2 334567788899999999999999999
Q ss_pred HHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 171 QKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 171 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
.+++..||.++.+..+.+.|. .-.++...|++..+.+. ..|..
T Consensus 276 ~~i~~~D~~~~~a~NnKALcl-lYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 276 TEILRMDPRNAVANNNKALCL-LYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhccccCCCchhhhchHHHHH-HHHHHHHHHHHHHHHHhccCCcc
Confidence 999999999999999999887 78899999999999988 88844
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.4e-07 Score=50.67 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=39.6
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
.++..+|.+ |..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~------~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARA------YRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 568889999 999999999999999999999999999999885
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.40 E-value=8.2e-07 Score=46.86 Aligned_cols=32 Identities=41% Similarity=0.624 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.9e-06 Score=60.56 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc-----cCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS-----LEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
+++|+.-|++++.++|+. ..++.++|.++.++|.+.. ..-|++|..+|++|...+|++......+.
T Consensus 51 iedAisK~eeAL~I~P~~-----hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNK-----HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHHHH-TT------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCch-----HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 478999999999999999 9999999999666665322 13488999999999999999876544433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.4e-05 Score=65.34 Aligned_cols=173 Identities=13% Similarity=0.064 Sum_probs=121.7
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFC---------SQKLEQTAISLKDEGNA 77 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~ 77 (229)
.+||+++|+...++..++.-.. .-+.++...+++++.+............. .....-...+-..+|++
T Consensus 192 ~eALei~pdCAdAYILLAEEeA---~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmC 268 (539)
T PF04184_consen 192 KEALEINPDCADAYILLAEEEA---STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMC 268 (539)
T ss_pred HHHHHhhhhhhHHHhhcccccc---cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHH
Confidence 4689999999999988875322 34567777887777654433322111100 00111234567789999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-CCCcHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-NPSYLKVYQRRARL 156 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~~ 156 (229)
..+.|+.++|++.+...++.+|... ...++.++-.+ +..++.|.++...+.+-=.+ -|+.+...|..|..
T Consensus 269 arklGr~~EAIk~~rdLlke~p~~~---~l~IrenLie~------LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 269 ARKLGRLREAIKMFRDLLKEFPNLD---NLNIRENLIEA------LLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred HHHhCChHHHHHHHHHHHhhCCccc---hhhHHHHHHHH------HHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 9999999999999999999888531 27789999999 99999999999888885433 26666666666554
Q ss_pred HHh-ccc---------------HHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 157 YQQ-SDK---------------LDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 157 ~~~-~~~---------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
-.+ .++ -..|++.+.+|++.+|..+.....+..+-
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~Li 390 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLI 390 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCC
Confidence 432 111 23578999999999999998776665543
|
The molecular function of this protein is uncertain. |
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-07 Score=69.04 Aligned_cols=92 Identities=23% Similarity=0.246 Sum_probs=85.1
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
..-|.. ++.-..|..|+.+|.++|.++|..+..|.+.+.|+.++++++.+.....++++++|+....++.+|.+
T Consensus 14 kE~gnk------~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 14 KEQGNK------CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred Hhcccc------ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 344666 88889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhhhhccccccccc
Q psy13014 191 PDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 191 ~~~~~~~~~~a~~~~~~~~ 209 (229)
. ...+.+.++++.+.+++
T Consensus 88 ~-l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 88 L-LQSKGYDEAIKVLQRAY 105 (284)
T ss_pred H-HhhccccHHHHHHHHHH
Confidence 8 77888999999888885
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-05 Score=56.87 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
-++.+|..+..+ |++.+|...|++.+.. ....++..+..+++..+..+++..|...+++..+.+
T Consensus 91 nr~rLa~al~el-Gr~~EA~~hy~qalsG---------------~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 91 NRYRLANALAEL-GRYHEAVPHYQQALSG---------------IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHHh-hhhhhhHHHHHHHhcc---------------ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 467788899999 9999999999887732 335778889999999999999999999999999998
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
|.... ++.+..+|.+ +-.+|.+.+|...|+.++...|+ +.+-...+..+..+|+.++|..-+....
T Consensus 155 pa~r~---pd~~Ll~aR~------laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 155 PAFRS---PDGHLLFART------LAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CccCC---CCchHHHHHH------HHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 86544 7778888999 99999999999999999999885 6667778899999998887766655443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.1e-06 Score=74.69 Aligned_cols=167 Identities=12% Similarity=0.020 Sum_probs=119.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
+.+..+|..+...+... |+.++|...|++.... ...| +...+..+-..+.+.|..++|..+|+.
T Consensus 551 ~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~--------------g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 551 EKDVVSWNILLTGYVAH-GKGSMAVELFNRMVES--------------GVNP-DEVTFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred CCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHc--------------CCCC-CcccHHHHHHHHhhcChHHHHHHHHHH
Confidence 34455566666666666 7777777777654411 1122 333455555678888999999999988
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
..+..+-..+ ...|..+..+ +.+.|++++|.+.+++. .+.|+ +.+|..+-.++...|+.+.+....+++
T Consensus 615 M~~~~gi~P~---~~~y~~lv~~------l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 615 MEEKYSITPN---LKHYACVVDL------LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHhCCCCc---hHHHHHHHHH------HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8754322211 6678888888 99999999999999874 45564 566777766778889999999999999
Q ss_pred HHhCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 174 LELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 174 l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
++++|++...+..++.++ ...+++.++.+....+
T Consensus 684 ~~l~p~~~~~y~ll~n~y-a~~g~~~~a~~vr~~M 717 (857)
T PLN03077 684 FELDPNSVGYYILLCNLY-ADAGKWDEVARVRKTM 717 (857)
T ss_pred HhhCCCCcchHHHHHHHH-HHCCChHHHHHHHHHH
Confidence 999999999999999888 6667766666555444
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-06 Score=45.19 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
.+++.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-05 Score=53.95 Aligned_cols=105 Identities=15% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.+-..|+.+... |+.+.|++.|.+++ ...|+.+.++.+.+.++.-+|+.++|+..+++++++.
T Consensus 45 ~LEl~~valaE~-g~Ld~AlE~F~qal----------------~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa 107 (175)
T KOG4555|consen 45 ELELKAIALAEA-GDLDGALELFGQAL----------------CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA 107 (175)
T ss_pred HHHHHHHHHHhc-cchHHHHHHHHHHH----------------HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 345567788888 99999999998888 5678999999999999999999999999999999996
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
... ......++..+|.+ |..+|+.+.|...|+.+-++....+
T Consensus 108 g~~-trtacqa~vQRg~l------yRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 108 GDQ-TRTACQAFVQRGLL------YRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred Ccc-chHHHHHHHHHHHH------HHHhCchHHHHHhHHHHHHhCCHHH
Confidence 544 22336789999999 9999999999999999988766543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-06 Score=45.82 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=30.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
+.+|+++|.+ +..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~------~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNA------YFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHH------HHHhCCchHHHHHHHHHHHHCcCC
Confidence 4679999999 999999999999999999999974
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-05 Score=72.18 Aligned_cols=191 Identities=13% Similarity=0.037 Sum_probs=148.3
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH---------HHHHhhhhh------hh----H--
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF---------HVLFYLFCS------QK----L-- 64 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~------~~----~-- 64 (229)
|.+.+.-+|+....|...=.....+ ++++.|...+++++..+.+.. ..+.+.... .. .
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~Lel-sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLEL-SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhh-hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 6777888999988777765566677 999999999998886552211 111111100 00 0
Q ss_pred -HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 65 -EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 65 -~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
-+-...+..+..+|...+++++|.+.++..++...+. ..+|...|.. ++..++-+.|...+.+|++.-
T Consensus 1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~-----~~vW~~y~~f------Ll~~ne~~aa~~lL~rAL~~l 1594 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT-----RKVWIMYADF------LLRQNEAEAARELLKRALKSL 1594 (1710)
T ss_pred hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch-----hhHHHHHHHH------HhcccHHHHHHHHHHHHHhhc
Confidence 0122356677888999999999999999999998866 8899999999 999999999999999999999
Q ss_pred CC--cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 144 PS--YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 144 p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
|. +....-..|.+-++.|+.+.+...|+..+.-+|.-.+.|.-+.... .+.++.......|++++
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e-ik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME-IKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH-HccCCHHHHHHHHHHHH
Confidence 98 7888888999999999999999999999999999999998877765 55555555555666665
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.4e-06 Score=68.10 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=100.3
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC- 102 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~- 102 (229)
|-.++-+ |+++.|+..-+..+...+-+ ......-.++.++|+++.-.|+++.|+++|.+.+.+.-.-.
T Consensus 202 GNTyYlL-Gdf~~ai~~H~~RL~ia~ef----------GDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~ 270 (639)
T KOG1130|consen 202 GNTYYLL-GDFDQAIHFHKLRLEIAQEF----------GDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGN 270 (639)
T ss_pred Cceeeee-ccHHHHHHHHHHHHHHHHHh----------hhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcc
Confidence 3344445 77777776555444332211 12234446888999999999999999999999877632111
Q ss_pred chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 103 SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 103 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
....+...+.+|.. |.-+.++++||.++.+-+.+. -....+++.+|.++..+|..++|+...++.+++
T Consensus 271 r~vEAQscYSLgNt------ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNT------YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 12247778889999 999999999999998877653 234678999999999999999999988888766
Q ss_pred C
Q psy13014 177 D 177 (229)
Q Consensus 177 ~ 177 (229)
.
T Consensus 345 s 345 (639)
T KOG1130|consen 345 S 345 (639)
T ss_pred H
Confidence 3
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-05 Score=63.25 Aligned_cols=154 Identities=18% Similarity=0.125 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
......|.+++.+ |++++|...|+-.. +...-.+..+.+++.+.+-.|.|.+|...-.++-+.
T Consensus 58 ~~~lWia~C~fhL-gdY~~Al~~Y~~~~----------------~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~ 120 (557)
T KOG3785|consen 58 SLQLWIAHCYFHL-GDYEEALNVYTFLM----------------NKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKT 120 (557)
T ss_pred HHHHHHHHHHHhh-ccHHHHHHHHHHHh----------------ccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 4566778889999 99999999886655 344455677888999999999999988776554211
Q ss_pred CCCC-----------Cch-hhHHHHHhHhhhhh---hhHH-hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 98 CPRS-----------CSV-SRAVFYANRSAALE---KLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 98 ~p~~-----------~~~-~~~~~~~~lg~~~~---~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
|-. .++ .....+..++...+ |++. .+..-.|++||+.|.+++.-+|+....-..+|.||.++.
T Consensus 121 -pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD 199 (557)
T KOG3785|consen 121 -PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD 199 (557)
T ss_pred -hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc
Confidence 100 000 01112222222211 1111 555567999999999999999999888899999999999
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
-|+-+.+.+.--++.-|+.+-+....+.
T Consensus 200 Yydvsqevl~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 200 YYDVSQEVLKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred hhhhHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9999999999999999999887765543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.2e-06 Score=44.42 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=30.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
+.+++.+|.+ ++.+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~------~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQA------YYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999 999999999999999999999985
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.6e-05 Score=57.48 Aligned_cols=111 Identities=19% Similarity=0.188 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+..++..|...++.|+|.+|+..|+......|.+.- ...+...++.+ +++.++++.|+...++-+.+.|.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~--~~qa~l~l~yA------~Yk~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY--SEQAQLDLAYA------YYKNGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc--cHHHHHHHHHH------HHhcccHHHHHHHHHHHHHhCCCC
Confidence 5678999999999999999999999999999886522 26778889999 999999999999999999999887
Q ss_pred H---HHHHHHHHHHHhc--------ccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 147 L---KVYQRRARLYQQS--------DKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 147 ~---~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
+ .+++..|.+++.. .-..+|+..|+..++..|+..-+-.
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d 154 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD 154 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh
Confidence 5 4688888887643 3356799999999999998764433
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.9e-05 Score=65.06 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=93.6
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchh
Q psy13014 26 ILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS 105 (229)
Q Consensus 26 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 105 (229)
.+... ++++++.....+.+ ...|++..++...-.+..+.++|++|+...++-....-.
T Consensus 21 ~~~~~-~e~e~a~k~~~Kil----------------~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~----- 78 (652)
T KOG2376|consen 21 RHGKN-GEYEEAVKTANKIL----------------SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI----- 78 (652)
T ss_pred Hhccc-hHHHHHHHHHHHHH----------------hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc-----
Confidence 34444 67777777666665 455888899999999999999999999554433322222
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
....+..+.| .++++..++|+..++ ..++.+..+....|.+++.+|+|++|+..|+..++-+
T Consensus 79 -~~~~fEKAYc------~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 79 -NSFFFEKAYC------EYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred -chhhHHHHHH------HHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 2223789999 999999999999998 5677778889999999999999999999999986554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00011 Score=59.66 Aligned_cols=128 Identities=15% Similarity=0.027 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
+..-...+.-+..+ |+.++|.+..+..+ ....++. ...-.-...-++...=++..++.++
T Consensus 263 p~l~~~~a~~li~l-~~~~~A~~~i~~~L-----------------k~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 263 PELVVAYAERLIRL-GDHDEAQEIIEDAL-----------------KRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred hhHHHHHHHHHHHc-CChHHHHHHHHHHH-----------------HhccChh--HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 44444555556666 88888887776665 2222222 2222334567889999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
..|++ +.++..+|.. +++.+.|.+|..+++.+++..| +...+..+|.++..+|+..+|.+.++.++..
T Consensus 323 ~h~~~-----p~L~~tLG~L------~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 323 QHPED-----PLLLSTLGRL------ALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hCCCC-----hhHHHHHHHH------HHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999 9999999999 9999999999999999999988 4666889999999999999999999998844
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00022 Score=56.92 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=110.1
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR-LNQWSESLAKYNEALRSC 98 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~ 98 (229)
|.......... +..+.+...|.++. ....-...+|...|...+. .++.+.|...|+.+++..
T Consensus 4 ~i~~m~~~~r~-~g~~~aR~vF~~a~----------------~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f 66 (280)
T PF05843_consen 4 WIQYMRFMRRT-EGIEAARKVFKRAR----------------KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF 66 (280)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHH----------------CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CChHHHHHHHHHHH----------------cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 34444455555 66888888888776 3444566788889999777 566666999999999999
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL---KVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
|.+ ..+|...... +...|+.+.|...|++++..-|... ..|......-...|+.+......+++.+
T Consensus 67 ~~~-----~~~~~~Y~~~------l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 67 PSD-----PDFWLEYLDF------LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT------HHHHHHHHHH------HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred CCC-----HHHHHHHHHH------HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998 8888888888 8899999999999999999877665 5777888888899999999999999999
Q ss_pred hCCCcHHHHHHhcc
Q psy13014 176 LDPNNRDAYVATKV 189 (229)
Q Consensus 176 ~~p~~~~~~~~l~~ 189 (229)
.-|++........+
T Consensus 136 ~~~~~~~~~~f~~r 149 (280)
T PF05843_consen 136 LFPEDNSLELFSDR 149 (280)
T ss_dssp HTTTS-HHHHHHCC
T ss_pred HhhhhhHHHHHHHH
Confidence 99997776655443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-06 Score=45.18 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=31.6
Q ss_pred HHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHH
Q psy13014 90 KYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134 (229)
Q Consensus 90 ~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~ 134 (229)
+|+++|+++|++ +.+|+++|.+ +...|++++|++
T Consensus 1 ~y~kAie~~P~n-----~~a~~nla~~------~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN-----AEAYNNLANL------YLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC-----HHHHHHHHHH------HHHCcCHHhhcC
Confidence 478999999999 9999999999 999999999863
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.8e-05 Score=59.77 Aligned_cols=143 Identities=11% Similarity=-0.013 Sum_probs=91.9
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
.||.+.-...|......+.-+..+... +.+..|........ ....-....+...+-+.++.++
T Consensus 65 ~CYeQL~ql~P~~~qYrlY~AQSLY~A-~i~ADALrV~~~~~----------------D~~~L~~~~lqLqaAIkYse~D 127 (459)
T KOG4340|consen 65 ECYEQLGQLHPELEQYRLYQAQSLYKA-CIYADALRVAFLLL----------------DNPALHSRVLQLQAAIKYSEGD 127 (459)
T ss_pred HHHHHHHhhChHHHHHHHHHHHHHHHh-cccHHHHHHHHHhc----------------CCHHHHHHHHHHHHHHhccccc
Confidence 467888888888888888888888888 88888877653322 1111122333444555556666
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 163 (229)
+..+....+ .-|... .+....+.|.+ .++.|+|+.|++-|+.+++...-++-.-+++|.+++..|++
T Consensus 128 l~g~rsLve----Qlp~en---~Ad~~in~gCl------lykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qy 194 (459)
T KOG4340|consen 128 LPGSRSLVE----QLPSEN---EADGQINLGCL------LYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQY 194 (459)
T ss_pred CcchHHHHH----hccCCC---ccchhccchhe------eeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhH
Confidence 665554433 233211 15666677777 77777777777777777777776777777777777777777
Q ss_pred HHHHHHHHHHHHh
Q psy13014 164 DEALADYQKILEL 176 (229)
Q Consensus 164 ~~A~~~~~~al~~ 176 (229)
+.|+++....++.
T Consensus 195 asALk~iSEIieR 207 (459)
T KOG4340|consen 195 ASALKHISEIIER 207 (459)
T ss_pred HHHHHHHHHHHHh
Confidence 7777766665544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0003 Score=50.35 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=74.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-----------------hhhHHHHHhHhhhhhhhHHhhccCChHHHH
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-----------------VSRAVFYANRSAALEKLASYLSLEKPDQSI 133 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~ 133 (229)
+...|......++...++..+.+++.+.....- .....+...++.. +...|++++|+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~------~~~~~~~~~a~ 82 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEA------LLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHH------HHHTT-HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH------HHhccCHHHHH
Confidence 344566667788899999999999998643311 1122334444445 88899999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
..+.+++..+|-+..++..+-.++...|+..+|+..|++...
T Consensus 83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00015 Score=67.07 Aligned_cols=173 Identities=12% Similarity=-0.030 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
......|.++... |+++.+...++.++.... .........+...+|.++...|++++|...+.+++..
T Consensus 453 ~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~~-----------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~ 520 (903)
T PRK04841 453 EFNALRAQVAIND-GDPEEAERLAELALAELP-----------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM 520 (903)
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHhcCC-----------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445567777777 999999988887763211 0111223456678999999999999999999999987
Q ss_pred CCCCCch-hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 98 CPRSCSV-SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--------SYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 98 ~p~~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
....... ....++.++|.+ +...|++++|...+++++.+.. .....+..+|.++...|++++|..
T Consensus 521 ~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 521 ARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred HhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5533221 134567788999 9999999999999999987621 123346678999999999999999
Q ss_pred HHHHHHHhCCC-----cHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 169 DYQKILELDPN-----NRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 169 ~~~~al~~~p~-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+.+++..... ....+..++.+. ...++..+|...+..+.
T Consensus 595 ~~~~al~~~~~~~~~~~~~~~~~la~~~-~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 595 CARKGLEVLSNYQPQQQLQCLAMLAKIS-LARGDLDNARRYLNRLE 639 (903)
T ss_pred HHHHhHHhhhccCchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 99999876332 233444456555 55666666666655554
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-06 Score=71.86 Aligned_cols=94 Identities=30% Similarity=0.301 Sum_probs=88.0
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
.+..+.++.|+..|.+||+++|+++..+-+.+.++.+.+++..|+..+.++++++|....+++..|..+ -.++++.+|+
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~-m~l~~~~~A~ 92 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV-MALGEFKKAL 92 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH-HhHHHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999999999999999888 8889999999
Q ss_pred ccccccc-ccCCCccc
Q psy13014 203 KLSPDVF-LHPGQPQI 217 (229)
Q Consensus 203 ~~~~~~~-~~p~~~~~ 217 (229)
..|+... +.|+++..
T Consensus 93 ~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHhhhcCcCcHHH
Confidence 9999998 88866543
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=65.06 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCCCCc---hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEA-LRSCPRSCS---VSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~~~~---~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
...+.+.+++..++.++-.|++.+|.+.+... +...|.... -.....|+++|.+ +++++.|.-++-+|.+
T Consensus 235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI------h~~~~~y~~~~~~F~k 308 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI------HYQLGCYQASSVLFLK 308 (696)
T ss_pred hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceE------eeehhhHHHHHHHHHH
Confidence 33467788899999999999999999987443 222232110 0135668999999 9999999999999999
Q ss_pred HHhc---------C---------CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 139 AITL---------N---------PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 139 al~~---------~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
|++. . ......+|+.|..+...|+.-.|.++|.+++...-.+|..|..++.|+-
T Consensus 309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9951 1 2335689999999999999999999999999999999999999999984
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=6e-05 Score=69.38 Aligned_cols=134 Identities=16% Similarity=0.113 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRS--CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN- 143 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~- 143 (229)
+...|..+...|.+.|+.++|+..|++.... .|+ ...+..+-.+ +.+.|..++|..+|+...+..
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd------~~T~~~ll~a------~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD------EVTFISLLCA------CSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------cccHHHHHHH------HhhcChHHHHHHHHHHHHHHhC
Confidence 3445666666666777777777777666553 233 2334444445 556677777777776665322
Q ss_pred -CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 144 -PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 144 -p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
..+...|..+..++.+.|++++|.+.+++. .+.|+ ...|..+-..+ ..-++.+.+.....+++ ++|++.
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac-~~~~~~e~~e~~a~~l~~l~p~~~ 691 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC-RIHRHVELGELAAQHIFELDPNSV 691 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH-HHcCChHHHHHHHHHHHhhCCCCc
Confidence 123456666677777777777777766654 24444 33444444444 33334444444444444 566543
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00018 Score=57.50 Aligned_cols=106 Identities=15% Similarity=0.037 Sum_probs=50.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-CCCc---HHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-NPSY---LKVY 150 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~ 150 (229)
+...+..|++.+|-..+++.++-.|.+ ..++..--.+ ++..|+...-...+++.+-. +|+- ..+.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtD-----lla~kfsh~a------~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTD-----LLAVKFSHDA------HFYNGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchh-----hhhhhhhhhH------HHhccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 334445556666666666666666655 3333333334 44444444444445544444 3333 2222
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
-.++..+...|-|++|.+..+++++++|.+.-+...++.+.
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 23344444455555555555555555555444444444444
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00047 Score=52.81 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF--YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.++...|.-++.. |++.+|...|..++..+..+...-. .....+........+.+...|+...|+|-+++++....+
T Consensus 179 ~~l~q~GN~lfk~-~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 179 PVLHQEGNRLFKL-GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred HHHHHhhhhhhhh-ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567778888888 9999999999888755443321100 111123344556678899999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHH
Q psy13014 96 RSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR 152 (229)
Q Consensus 96 ~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (229)
...|.+ ..+++.+|.+ +...=+..+|.+.+.++++++|.-..+..+
T Consensus 258 ~~~~~n-----vKA~frRakA------haa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 258 RHHPGN-----VKAYFRRAKA------HAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hcCCch-----HHHHHHHHHH------HHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 999999 9999999999 888889999999999999999987655433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00022 Score=65.99 Aligned_cols=177 Identities=8% Similarity=-0.067 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
......+.++... |++.++...+..+....... ................|.++...|++++|...+++++..
T Consensus 410 ~l~~~~a~~~~~~-g~~~~a~~~l~~a~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~ 481 (903)
T PRK04841 410 RLVLLQAWLAQSQ-HRYSEVNTLLARAEQELKDR-------NIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE 481 (903)
T ss_pred chHHHHHHHHHHC-CCHHHHHHHHHHHHHhcccc-------CcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3445556666666 77777777665543221100 000001123445556888999999999999999999986
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC----c--HHHHHHHHHHHHhcccHHHHHHHHH
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS----Y--LKVYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
.+.........+...+|.+ +...|++++|...+.+++..... . ..++..+|.++...|++++|...++
T Consensus 482 ~~~~~~~~~~~a~~~lg~~------~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 555 (903)
T PRK04841 482 LPLTWYYSRIVATSVLGEV------HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQE 555 (903)
T ss_pred CCCccHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5554222234567788999 99999999999999999876322 1 3467788999999999999999999
Q ss_pred HHHHhCCC--------cHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 172 KILELDPN--------NRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 172 ~al~~~p~--------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+++.+... ....+..++.+. ...++..+|...+.+++
T Consensus 556 ~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 556 KAFQLIEEQHLEQLPMHEFLLRIRAQLL-WEWARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHH-HHhcCHHHHHHHHHHhH
Confidence 99886321 122344556665 55677777777766665
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=2e-05 Score=63.39 Aligned_cols=134 Identities=13% Similarity=0.101 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchh-hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC---
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS-RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--- 144 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--- 144 (229)
.+...+|.++..++.|+++++.|++|++....+.+.. ...++..+|.. +..++++++|+-+..+|.++-.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl------f~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL------FAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH------HHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 5667799999999999999999999999865543322 35678888999 9999999999999988887632
Q ss_pred -Cc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CC----cHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 145 -SY------LKVYQRRARLYQQSDKLDEALADYQKILELD--PN----NRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 145 -~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++ ..+++.++.++..+|+.-.|.++.+++.++. -. ......-++.++ ...++.+.|...|+.++
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy-R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY-RSRGDLERAFRRYEQAM 273 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH-HhcccHhHHHHHHHHHH
Confidence 22 2367889999999999999999999987663 22 233445567777 66777777777776655
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00016 Score=60.19 Aligned_cols=180 Identities=14% Similarity=0.125 Sum_probs=100.8
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+..+..|--+...+...|..-... +++..|...|++++ ..+..+...|...+..-.+.++..
T Consensus 62 fEd~irrnR~~~~~WikYaqwEesq-~e~~RARSv~ERAL----------------dvd~r~itLWlkYae~Emknk~vN 124 (677)
T KOG1915|consen 62 FEDQIRRNRLNMQVWIKYAQWEESQ-KEIQRARSVFERAL----------------DVDYRNITLWLKYAEFEMKNKQVN 124 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH----------------hcccccchHHHHHHHHHHhhhhHh
Confidence 4445555555566666666666666 77777777777776 344555556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHH---------------------------hhccCChHHHHHHHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS---------------------------YLSLEKPDQSILACSK 138 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~---------------------------~~~~~~~~~A~~~~~~ 138 (229)
.|...+++|+.+-|.- ...|+..-...+++|+ -.+-+..+.|...|++
T Consensus 125 hARNv~dRAvt~lPRV-----dqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYer 199 (677)
T KOG1915|consen 125 HARNVWDRAVTILPRV-----DQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYER 199 (677)
T ss_pred HHHHHHHHHHHhcchH-----HHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666666666654 4555554444222221 2333445555555555
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH---HHHhccCchHHHhhhhhccccccccc
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA---YVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
-+-..| .+..|...|.--...|+..-|...|+.|+..-.++... ....+... +..++++.|.-.|.-++
T Consensus 200 fV~~HP-~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fE-e~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 200 FVLVHP-KVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFE-ERQKEYERARFIYKYAL 271 (677)
T ss_pred Hheecc-cHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 555554 35556666666666677777777777776655443322 22222222 44455555555555444
|
|
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0011 Score=51.35 Aligned_cols=144 Identities=10% Similarity=0.061 Sum_probs=102.3
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
-.+.++....-.++..+ .+.+-|....++.... +........+.+|..++. .-+++.+|.-+|+.
T Consensus 134 ~~~lE~~Al~VqI~lk~-~r~d~A~~~lk~mq~i-----------ded~tLtQLA~awv~la~---ggek~qdAfyifeE 198 (299)
T KOG3081|consen 134 GENLEAAALNVQILLKM-HRFDLAEKELKKMQQI-----------DEDATLTQLAQAWVKLAT---GGEKIQDAFYIFEE 198 (299)
T ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHHHHhc---cchhhhhHHHHHHH
Confidence 44555666666677776 6666666655444310 000011223344444432 23558899999999
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHH-HHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA-DYQK 172 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~-~~~~ 172 (229)
.-...|.. +......+.| ++.+++|++|...++.++..++++++++.++-.+-..+|...++.. .+.+
T Consensus 199 ~s~k~~~T-----~~llnG~Av~------~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 199 LSEKTPPT-----PLLLNGQAVC------HLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred HhcccCCC-----hHHHccHHHH------HHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 98877766 8999999999 9999999999999999999999999999999999999998766554 4555
Q ss_pred HHHhCCCcHHH
Q psy13014 173 ILELDPNNRDA 183 (229)
Q Consensus 173 al~~~p~~~~~ 183 (229)
....+|+++-.
T Consensus 268 Lk~~~p~h~~v 278 (299)
T KOG3081|consen 268 LKLSHPEHPFV 278 (299)
T ss_pred HHhcCCcchHH
Confidence 66677776644
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00046 Score=55.64 Aligned_cols=137 Identities=15% Similarity=0.084 Sum_probs=104.5
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH---HHHHHHHHHH-------hhhhhhhHHHHHHHHHHHHHHHHHc
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVF---YIQFIFHVLF-------YLFCSQKLEQTAISLKDEGNALFRL 81 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (229)
.+.-+.+....++.+++.+ |.+.+|....+++.. .++...+... +........+..+-...++.+++..
T Consensus 86 ~~~~~~el~vnLAcc~FyL-g~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR 164 (557)
T KOG3785|consen 86 KDDAPAELGVNLACCKFYL-GQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMR 164 (557)
T ss_pred cCCCCcccchhHHHHHHHH-HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHH
Confidence 3334456677888899999 999999887765431 1122221111 2222233344445667788899999
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS 160 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 160 (229)
-.|.+|++.|.+.+..+|.. ..+-.++|.| |.++.-|+-+.+.+.--++..|+++-+...++..++.+
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey-----~alNVy~ALC------yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEY-----IALNVYMALC------YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHHHHHHhcChhh-----hhhHHHHHHH------HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 99999999999999999998 8888899999 99999999999999999999999999998888887765
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=58.52 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
..+..+|..+..+ +.++.+.+.|++++.... ...+..-...++..+|..+.+.+++++|..+..+|..+
T Consensus 123 q~~l~~~~Ahlgl-s~fq~~Lesfe~A~~~A~----------~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 123 QVSLSMGNAHLGL-SVFQKALESFEKALRYAH----------NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred hhhhhHHHHhhhH-HHHHHHHHHHHHHHHHhh----------ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 4566678888888 889999999888874321 00111233467889999999999999999999999888
Q ss_pred CCCCC-----chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhcccHHHH
Q psy13014 98 CPRSC-----SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 98 ~p~~~-----~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A 166 (229)
..... ...+..+.+.++.. +..+|..-.|.++++++.++. |.......-+|.+|...|+.+.|
T Consensus 192 v~s~~l~d~~~kyr~~~lyhmaVa------lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 192 VNSYGLKDWSLKYRAMSLYHMAVA------LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred HHhcCcCchhHHHHHHHHHHHHHH------HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 54332 12356778889999 999999999999999997763 34466778899999999999999
Q ss_pred HHHHHHHHHhCC
Q psy13014 167 LADYQKILELDP 178 (229)
Q Consensus 167 ~~~~~~al~~~p 178 (229)
..-|+++.....
T Consensus 266 f~rYe~Am~~m~ 277 (518)
T KOG1941|consen 266 FRRYEQAMGTMA 277 (518)
T ss_pred HHHHHHHHHHHh
Confidence 999999886643
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.4e-05 Score=41.06 Aligned_cols=32 Identities=34% Similarity=0.676 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666777777777777777777777776663
|
... |
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0004 Score=59.85 Aligned_cols=180 Identities=11% Similarity=0.058 Sum_probs=141.2
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
+|..||++...+.....+ .. |+..+.+..|..++..++ ...........|...|..|...|+.+.|.
T Consensus 341 lLRQn~~nV~eW~kRV~l--~e-~~~~~~i~tyteAv~~vd----------P~ka~Gs~~~Lw~~faklYe~~~~l~~aR 407 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVKL--YE-GNAAEQINTYTEAVKTVD----------PKKAVGSPGTLWVEFAKLYENNGDLDDAR 407 (835)
T ss_pred HHhcCCccHHHHHhhhhh--hc-CChHHHHHHHHHHHHccC----------cccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence 467788888888776443 34 667777777776664322 01122344568999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC------------------cHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS------------------YLKVY 150 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~ 150 (229)
..|+++.+..-. .-++.+.+|..-|.. -+...+++.|....++|...--+ +...|
T Consensus 408 vifeka~~V~y~-~v~dLa~vw~~waem------Elrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 408 VIFEKATKVPYK-TVEDLAEVWCAWAEM------ELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred HHHHHhhcCCcc-chHHHHHHHHHHHHH------HHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 999999997432 233468889999988 88899999999999998765211 24467
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..++......|-++.....|.+.+.+.-..|....|.+..+ +.-+-++++.+.|++-+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfL-Eeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFL-EEHKYFEESFKAYERGI 538 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhhHHHHHHHHHHHcCC
Confidence 78888889999999999999999999999999999999888 77888999999999887
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=49.96 Aligned_cols=112 Identities=13% Similarity=0.077 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhcc-CChHHHHHHHHHHHhcC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSL-EKPDQSILACSKAITLN 143 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~-~~~~~A~~~~~~al~~~ 143 (229)
+++...+..+.-+++..+..+|+.++++++.+..+-.. ..-+..+..+|.+ |... .++++||.+|+.+-+-.
T Consensus 71 hDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEi------yEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 71 HDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEI------YESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred hhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHH------HhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444555666999999999999998765411 0113345567777 6544 89999999999997754
Q ss_pred CCc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 144 PSY------LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 144 p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
... -..+...|..-..+++|.+|+..|++.....-+++-.
T Consensus 145 k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 145 KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 332 2356667888889999999999999998777666543
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.2e-05 Score=65.59 Aligned_cols=101 Identities=19% Similarity=0.211 Sum_probs=82.2
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy13014 79 FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ 158 (229)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 158 (229)
...++|.+|+....+.++..|+. ..+...-|.. +.++|.+++|..+++..-...+++..++--+-.||.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-----~~a~vLkaLs------l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~ 88 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-----LYAKVLKALS------LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYR 88 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-----HHHHHHHHHH------HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHH
Confidence 45678888999999999999887 7777777888 888999999997777666667778888888889999
Q ss_pred hcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 159 QSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+|++++|+..|++++..+|+ .+....+=.++
T Consensus 89 d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmay 120 (932)
T KOG2053|consen 89 DLGKLDEAVHLYERANQKYPS-EELLYHLFMAY 120 (932)
T ss_pred HHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHH
Confidence 999999999999999999998 55555554444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0059 Score=45.31 Aligned_cols=105 Identities=18% Similarity=0.137 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
..+...++..++..+++++|+..++.++....+. ...+.+-.++|.+ ...+|.+++|+..++..-.. .-.+
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De--~lk~l~~lRLArv------q~q~~k~D~AL~~L~t~~~~-~w~~ 159 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDE--NLKALAALRLARV------QLQQKKADAALKTLDTIKEE-SWAA 159 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH--HHHHHHHHHHHHH------HHHhhhHHHHHHHHhccccc-cHHH
Confidence 3456788899999999999999999999754332 1236677889999 99999999999988753221 1123
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
......|.++...|+-++|...|+++++.+++..
T Consensus 160 ~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 160 IVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 3456789999999999999999999999985544
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0011 Score=61.67 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
+...+....|...|..++.+++-+.|...+.+|+..-|... .......-|.. .++.|+.+.+...|+..+.
T Consensus 1558 KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e---Hv~~IskfAqL------EFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1558 KKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE---HVEFISKFAQL------EFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred HHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh---hHHHHHHHHHH------HhhcCCchhhHHHHHHHHh
Confidence 34446788999999999999999999999999999999832 27778888899 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
-.|...+.|.-+...-.+.|+.+.+...|++++.+.-.-..+.......
T Consensus 1629 ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1629 AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 9999999999999999999999999999999999887666665544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.4e-05 Score=59.97 Aligned_cols=119 Identities=8% Similarity=0.048 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc-cCChHHHHHHHHHHHhcCCCcHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS-LEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
+|..+.....+.+..+.|...|.+|....+.. ..+|...|.. .+. .++.+.|...|+.+++..|.+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~-----~~vy~~~A~~------E~~~~~d~~~A~~Ife~glk~f~~~~~ 71 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCT-----YHVYVAYALM------EYYCNKDPKRARKIFERGLKKFPSDPD 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS------THHHHHHHHH------HHHTCS-HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCC-----HHHHHHHHHH------HHHhCCCHHHHHHHHHHHHHHCCCCHH
Confidence 45666677777777999999999998655555 7788888888 777 46666699999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH---HHHHHhccCchHHHhhhhh
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNR---DAYVATKVSPDLKLKEKNG 200 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~ 200 (229)
.|......+...++.+.|...|++++..-|... .+|....... .+.|+...
T Consensus 72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE-~~~Gdl~~ 125 (280)
T PF05843_consen 72 FWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE-SKYGDLES 125 (280)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH-HHHS-HHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHcCCHHH
Confidence 999999999999999999999999999877766 3444443333 34444333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00037 Score=59.63 Aligned_cols=109 Identities=12% Similarity=0.026 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|+.+..++..|..+...|+.++|++.|++++..... .......+++.+|.+ +..+.+|++|..++.+..+
T Consensus 261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~------~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWC------HMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHH------HHHHchHHHHHHHHHHHHh
Confidence 456888889999999999999999999999998854322 223346678889999 9999999999999999998
Q ss_pred cCCCc-HHHHHHHHHHHHhcccH-------HHHHHHHHHHHHhC
Q psy13014 142 LNPSY-LKVYQRRARLYQQSDKL-------DEALADYQKILELD 177 (229)
Q Consensus 142 ~~p~~-~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~ 177 (229)
.+.-+ ....|..|.|+...++. ++|.+.|.++-.+-
T Consensus 334 ~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 334 ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 76543 34556679999999999 88888888775543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.1e-05 Score=40.10 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=30.1
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+|+.+|.+ +..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~lg~~------y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKI------YEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHH------HHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999 999999999999999999999853
|
... |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0033 Score=51.97 Aligned_cols=171 Identities=17% Similarity=0.018 Sum_probs=127.4
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-----hhh--------hhhhHHHHHHH
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF-----YLF--------CSQKLEQTAIS 70 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~ 70 (229)
..+-..|..+|-+..++..++.++... |+...|.+..++++.......+... ... .......--.+
T Consensus 27 ~~l~~ll~~~PyHidtLlqls~v~~~~-gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffla 105 (360)
T PF04910_consen 27 NALINLLQKNPYHIDTLLQLSEVYRQQ-GDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLA 105 (360)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHH
Confidence 344556789999999999999999999 9999999999999987764444333 111 11223445567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC-----
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS----- 145 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----- 145 (229)
++.....+.+.|-+.-|.+..+-.+.++|.... ..+.+.+-.. ..+.++|+=-+..++........
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP---~g~ll~ID~~------ALrs~~y~~Li~~~~~~~~~~~~~~~~~ 176 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP---LGVLLFIDYY------ALRSRQYQWLIDFSESPLAKCYRNWLSL 176 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc---chhHHHHHHH------HHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence 788888999999999999999999999998311 3445555555 56778888778777765552221
Q ss_pred cHHHHHHHHHHHHhcccH---------------HHHHHHHHHHHHhCCCcHHHH
Q psy13014 146 YLKVYQRRARLYQQSDKL---------------DEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~---------------~~A~~~~~~al~~~p~~~~~~ 184 (229)
-+...+..+.++..+++- ++|...+.+|+..-|.-....
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~L 230 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPL 230 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHH
Confidence 234677788889989888 899999999999888655433
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00022 Score=60.08 Aligned_cols=111 Identities=24% Similarity=0.272 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc---cCChHHHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS---LEKPDQSILACSKA 139 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~A~~~~~~a 139 (229)
..++.++-+...|+--+..+....|+..|.+++...|.. ..++.+++.+ +++ .|+.-.|+..+-.|
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~-----~~~l~nraa~------lmkRkW~~d~~~AlrDch~A 437 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA-----IYLLENRAAA------LMKRKWRGDSYLALRDCHVA 437 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch-----hHHHHhHHHH------HHhhhccccHHHHHHhHHhh
Confidence 446677777888888888889999999999999999998 8999999988 654 36788899999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
++++|...++|+.++.++..++++.+|+++...+....|.+....
T Consensus 438 lrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 438 LRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 999999999999999999999999999999988888888665443
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00065 Score=54.40 Aligned_cols=107 Identities=8% Similarity=-0.045 Sum_probs=82.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 59 FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS-CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 59 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
...+..|.+..++..--.+++.+|+.......+++.+.. +|+-.- -.-+.-..+.+ +...|-|++|.+..+
T Consensus 128 klL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~--~sYv~GmyaFg------L~E~g~y~dAEk~A~ 199 (491)
T KOG2610|consen 128 KLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC--YSYVHGMYAFG------LEECGIYDDAEKQAD 199 (491)
T ss_pred HHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcH--HHHHHHHHHhh------HHHhccchhHHHHHH
Confidence 444566777777777778888899999988888888877 554300 02334445667 778899999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 138 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
++++++|.+..+...++.++...|++.++++...+.
T Consensus 200 ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 200 RALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999999999999998888888888776543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00069 Score=58.02 Aligned_cols=113 Identities=14% Similarity=0.175 Sum_probs=91.1
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSE 86 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (229)
+...+.-|+....++..|.++... |+.++|+..|++++.... .-..-....++.+|.++..+.+|++
T Consensus 257 ~~~~~~yP~s~lfl~~~gR~~~~~-g~~~~Ai~~~~~a~~~q~------------~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 257 EEMLKRYPNSALFLFFEGRLERLK-GNLEEAIESFERAIESQS------------EWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHh-cCHHHHHHHHHHhccchh------------hHHhHHHHHHHHHHHHHHHHchHHH
Confidence 456678899999999999999999 999999999998773222 1122334678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCCh-------HHHHHHHHHHHhc
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP-------DQSILACSKAITL 142 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~-------~~A~~~~~~al~~ 142 (229)
|..+|.+..+.+.-+ .+...+..|.| +..+++. ++|.+.+.++-..
T Consensus 324 A~~~f~~L~~~s~WS----ka~Y~Y~~a~c------~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWS----KAFYAYLAAAC------LLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccH----HHHHHHHHHHH------HHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999976543 36667777888 9999988 8888888887554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=42.04 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.++.+|..+.++|+|++|..+.+.+++++|++..+......+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 4677777778888888888888888888888777766555443
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=60.88 Aligned_cols=132 Identities=13% Similarity=0.078 Sum_probs=97.9
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHHHHccCHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQ--TAISLKDEGNALFRLNQWSESLA 89 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~ 89 (229)
+.-+.+.++++.+...+.. |++.+|...+...-.. .+ ......|+ ....|.++|.++++.|.|.-++.
T Consensus 235 ~a~~s~~~l~LKsq~eY~~-gn~~kA~KlL~~sni~----~~-----~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~ 304 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAH-GNHPKAMKLLLVSNIH----KE-----AGGTITPQLSSCIFNNNLGCIHYQLGCYQASSV 304 (696)
T ss_pred hcCCCcHHHHHHHHHHHHh-cchHHHHHHHHhcccc----cc-----cCccccchhhhheeecCcceEeeehhhHHHHHH
Confidence 3447788889999999999 9999888765321100 00 00001222 33467899999999999999999
Q ss_pred HHHHHHHh---------CCCCC----chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy13014 90 KYNEALRS---------CPRSC----SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL 156 (229)
Q Consensus 90 ~~~~al~~---------~p~~~----~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 156 (229)
+|.+|++- .|... ..-...+.++.|.. |...|++-.|.++|.+++.....++..|.++|.|
T Consensus 305 ~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~------~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 305 LFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLL------YLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred HHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHH------HHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999961 11110 01136789999999 9999999999999999999999999999999998
Q ss_pred HHh
Q psy13014 157 YQQ 159 (229)
Q Consensus 157 ~~~ 159 (229)
...
T Consensus 379 Cim 381 (696)
T KOG2471|consen 379 CIM 381 (696)
T ss_pred HHH
Confidence 764
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00041 Score=55.30 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=81.9
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS----YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
.+.-+-.-|.- |++.++|..|+..|.+.|...-. ++..|.+.|-|...+|+|..|+....+++.++|.+.
T Consensus 80 ~Aen~KeeGN~------~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 80 QAENYKEEGNE------YFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHHhHH------HHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 45666667888 99999999999999999988533 356799999999999999999999999999999999
Q ss_pred HHHHHhccCchHHHhhhhhccccccccc
Q psy13014 182 DAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+++.=+.|. ..++.+..|+.-.+..+
T Consensus 154 Ka~~R~Akc~-~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 154 KAYIRGAKCL-LELERFAEAVNWCEEGL 180 (390)
T ss_pred hhhhhhhHHH-HHHHHHHHHHHHHhhhh
Confidence 9998888777 77777777666555554
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0085 Score=45.80 Aligned_cols=137 Identities=15% Similarity=0.030 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCCchh-hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 67 TAISLKDEGNALFRL-NQWSESLAKYNEALRSCPRSCSVS-RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
-+..+..+|.+|-.. .++++|+.+|+++-.-........ -..++...+.. --.+++|.+||..|+++....-
T Consensus 112 aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y------aa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 112 AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY------AAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhc
Confidence 344566788888665 899999999999987654431110 12233333444 4578999999999999887765
Q ss_pred CcHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH--HHhccCch----HHHhhhhhccccccccc
Q psy13014 145 SYLK-------VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY--VATKVSPD----LKLKEKNGATKLSPDVF 209 (229)
Q Consensus 145 ~~~~-------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~----~~~~~~~~a~~~~~~~~ 209 (229)
++.- .++.-|.|+.-..+.-.+...+++-.+++|.....+ ..+..+.. .....+-+.++.|..+.
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsis 263 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSIS 263 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccc
Confidence 5532 355668888888888888889999999999876543 22222221 33334556666666554
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=57.70 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|+..-+....|..++++|+.++|..+++..-...+++ ......+-.| |..++++++|...|++++.
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D-----~~tLq~l~~~------y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD-----DLTLQFLQNV------YRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-----hHHHHHHHHH------HHHHhhhhHHHHHHHHHHh
Confidence 5778888889999999999999999998887777777776 7778888899 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
.+|+ ...++.+=++|.+.+.|.+-.+.--+..+.-|..+..
T Consensus 106 ~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yy 146 (932)
T KOG2053|consen 106 KYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYY 146 (932)
T ss_pred hCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccch
Confidence 9999 8888888889998888877655555555666776643
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00024 Score=36.72 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667777777777777777777777777765
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0015 Score=43.89 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=79.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC-----ChHHHHHHHHHHHhcCCCcHH
Q psy13014 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE-----KPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 74 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~ 148 (229)
.+..++..|++-+|++..+..+...+++.. .+..+..-|.+..+++.-...- -.-.+++.+.++..+.|..+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~--~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~ 79 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES--SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH 79 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc--hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH
Confidence 467789999999999999999999887622 1256666788844444321111 245789999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
.++.+|.-+....-|++++.-.++++.+.
T Consensus 80 ~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 80 SLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999998888888999999999888764
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=52.46 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=70.0
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
......++-.+ +.+.++++.|+.+.+..+.+.|+++.-+.-.|.+|.++|.+..|...++..++..|+++.+..
T Consensus 180 l~Rml~nLK~~------~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 180 IRKLLDTLKAA------LMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34456667777 999999999999999999999999999999999999999999999999999999999998875
Q ss_pred HhccC
Q psy13014 186 ATKVS 190 (229)
Q Consensus 186 ~l~~~ 190 (229)
....+
T Consensus 254 ik~ql 258 (269)
T PRK10941 254 IRAQI 258 (269)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00028 Score=37.55 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
++.++|.+|...|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666644
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.015 Score=39.60 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=71.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh----
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCS-------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT---- 141 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~---- 141 (229)
..|.-.++.|-|++|...+.+++.....-.. -..+.++..|+.+ +..+|+|++++...++++.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A------~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGA------LAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHH------HHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHH------HHhhccHHHHHHHHHHHHHHHhh
Confidence 3455567789999999999999988533211 1246677888888 9999999998887777764
Q ss_pred ---cCCCcHH----HHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 142 ---LNPSYLK----VYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 142 ---~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
++.+..+ +.+..|.++..+|+.++|+..|+++-+.
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4555544 5567899999999999999999988654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0029 Score=54.79 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=117.0
Q ss_pred Cccchhhcc-cCCchH-----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy13014 3 PLPYQQELS-KNPSFL-----YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGN 76 (229)
Q Consensus 3 ~~~~~~~l~-~~p~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 76 (229)
|++|.+|++ .||.-+ ..+...|..|-.. |+++.|...|++++..- -..-.+.+.+|..-|.
T Consensus 367 i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~-~~l~~aRvifeka~~V~------------y~~v~dLa~vw~~wae 433 (835)
T KOG2047|consen 367 INTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN-GDLDDARVIFEKATKVP------------YKTVEDLAEVWCAWAE 433 (835)
T ss_pred HHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc-CcHHHHHHHHHHhhcCC------------ccchHHHHHHHHHHHH
Confidence 677888775 677543 2455667778778 99999999999887211 1234567889999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCC--------c-----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSC--------S-----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~--------~-----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.-....+++.|..+.+.|...-.... . .....+|...+.. ....|-++.....|++.+.+.
T Consensus 434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHh
Confidence 99999999999999999987622210 0 0123456666666 556677788888888888877
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CCcHHHHH
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELD--PNNRDAYV 185 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 185 (229)
--.+....+.|..+....-+++|.+.|++.+.+- |.-.++|.
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 7777777788888877777777777777777664 33444544
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00061 Score=53.95 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=66.7
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
..+.|+.++|...|+.|+.+.|.++.++..+|......++.-+|-.+|.+|+.++|.+.+++.+.++...
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~p 195 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTP 195 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccch
Confidence 7789999999999999999999999999999999999999999999999999999999999999888763
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00036 Score=59.55 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=92.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHH
Q psy13014 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRR 153 (229)
Q Consensus 74 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 153 (229)
-|......|+...|+.++..|+...|... .....++|.+ ..+-|-.-.|-..+.+++.++...+-.++.+
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~----~v~~v~la~~------~~~~~~~~da~~~l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQ----DVPLVNLANL------LIHYGLHLDATKLLLQALAINSSEPLTFLSL 682 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhh----cccHHHHHHH------HHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence 34445668999999999999999998652 4567889999 8888889999999999999998889999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 154 ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 154 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
|.++..+.+.+.|++.|+.|+.++|+++.....+..
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 999999999999999999999999999887665543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00047 Score=35.57 Aligned_cols=33 Identities=15% Similarity=0.403 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (229)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367899999999999999999999999999974
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=1.2e-05 Score=63.96 Aligned_cols=89 Identities=22% Similarity=0.259 Sum_probs=80.8
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
.+..|.++.|+++|..+|.++|.....+-..+.++.++++...|+..+..+++++|+....+...+... ..++++.+|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~-rllg~~e~aa 202 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAE-RLLGNWEEAA 202 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHH-HHhhchHHHH
Confidence 667899999999999999999999999999999999999999999999999999999998888887776 7778888888
Q ss_pred ccccccc-ccC
Q psy13014 203 KLSPDVF-LHP 212 (229)
Q Consensus 203 ~~~~~~~-~~p 212 (229)
+++..++ ++-
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 8888887 543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0011 Score=38.54 Aligned_cols=44 Identities=7% Similarity=0.069 Sum_probs=35.6
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+..+.+|.. ++++|+|++|..+++.+++++|+|..+......+-
T Consensus 2 d~lY~lAig------~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 2 DCLYYLAIG------HYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHH------HHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred hhHHHHHHH------HHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 457788899 99999999999999999999999988766655443
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0018 Score=50.10 Aligned_cols=157 Identities=13% Similarity=0.102 Sum_probs=105.1
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH-H
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS-E 86 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~ 86 (229)
.++..||.+..++-.+-.++..+..+..+..++++..+ ...|.+-++|...-.+....|++. .
T Consensus 68 d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~----------------e~npKNYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 68 DAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEII----------------EDNPKNYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred HHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHH----------------HhCccchhHHHHHHHHHHHhcCcccc
Confidence 45677888887777777777776456677677666655 567777778877777777777777 7
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh------c
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ------S 160 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~ 160 (229)
-+++....+..+..+ ..+|..+-.| ...-+.++.-+.+..+.++.+--|-.+|...=-+... .
T Consensus 132 ELef~~~~l~~DaKN-----YHaWshRqW~------~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~ 200 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAKN-----YHAWSHRQWV------LRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISK 200 (318)
T ss_pred hHHHHHHHHhccccc-----hhhhHHHHHH------HHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccH
Confidence 777788888877777 7777777777 6666677777777777777665554444432111111 1
Q ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 161 DKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
-..+.-+.+..+.+.+.|++..+|..|.-++
T Consensus 201 ~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 201 AELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred HHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 1244455666667777777777776666555
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00057 Score=34.35 Aligned_cols=31 Identities=42% Similarity=0.579 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
+++.+|.++...|++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0022 Score=54.00 Aligned_cols=105 Identities=16% Similarity=0.086 Sum_probs=66.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----------
Q psy13014 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN---------- 143 (229)
Q Consensus 74 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------- 143 (229)
+-....+.++...-++.-.+|++++|+. +.+|..+|.- ......+|...++++++..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdC-----AdAYILLAEE--------eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~ 240 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDC-----ADAYILLAEE--------EASTIVEAEELLRQAVKAGEASLGKSQFL 240 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhh-----hHHHhhcccc--------cccCHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 3344456777888888888888888887 7777777653 2233344444444444321
Q ss_pred -------------CCc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--cHHHHHHhccCc
Q psy13014 144 -------------PSY--LKVYQRRARLYQQSDKLDEALADYQKILELDPN--NRDAYVATKVSP 191 (229)
Q Consensus 144 -------------p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~ 191 (229)
+.+ ..+-.++|+|..++|+.++|++.++..++..|. +..++.++..++
T Consensus 241 ~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~L 305 (539)
T PF04184_consen 241 QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEAL 305 (539)
T ss_pred hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHH
Confidence 000 223456788888888888888888888877664 344666666665
|
The molecular function of this protein is uncertain. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0071 Score=47.83 Aligned_cols=78 Identities=18% Similarity=0.095 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
...+.++-.++.+.++++.|+.+.+..+.+.|++ +.-+..+|.+ |.++|.+..|...++.-++..|+++
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-----p~e~RDRGll------~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPED-----PYEIRDRGLI------YAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCcHHHHHHHHHHHHhCCCch
Confidence 3456677788999999999999999999999999 9999999999 9999999999999999999999998
Q ss_pred HHHHHHHHH
Q psy13014 148 KVYQRRARL 156 (229)
Q Consensus 148 ~~~~~la~~ 156 (229)
.+-.-...+
T Consensus 250 ~a~~ik~ql 258 (269)
T PRK10941 250 ISEMIRAQI 258 (269)
T ss_pred hHHHHHHHH
Confidence 876555444
|
|
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0023 Score=50.74 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
....+......+.-....|+.++|...|+.|+.+.|.+ +++...+|.. ...-++.-+|-.+|-+|+.+.
T Consensus 112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~-----p~~L~e~G~f------~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTN-----PQILIEMGQF------REMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCC-----HHHHHHHhHH------HHhhhhhHhhhhhhheeeeeC
Confidence 33555666677778889999999999999999999999 9999999999 888899999999999999999
Q ss_pred CCcHHHHHHHHHH
Q psy13014 144 PSYLKVYQRRARL 156 (229)
Q Consensus 144 p~~~~~~~~la~~ 156 (229)
|.+.+++.+.+..
T Consensus 181 P~nseALvnR~RT 193 (472)
T KOG3824|consen 181 PGNSEALVNRART 193 (472)
T ss_pred CCchHHHhhhhcc
Confidence 9999998887654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0056 Score=43.68 Aligned_cols=66 Identities=17% Similarity=0.129 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
.....++..++..+...|++++|+..+++++..+|.+ ..+|..+-.+ +...|+...|+..|++...
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-----E~~~~~lm~~------~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD-----EEAYRLLMRA------LAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT------HHHHHHHHHH------HHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHH------HHHCcCHHHHHHHHHHHHH
Confidence 3455677888889999999999999999999999999 9999999999 9999999999999988754
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.014 Score=46.16 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH---------
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSK--------- 138 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~--------- 138 (229)
...-+..+......+++.+|...|..++...|.+ ..+...++.| +...|+.+.|...+..
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-----~~~~~~la~~------~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPEN-----SEAKLLLAEC------LLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCccc-----chHHHHHHHH------HHHcCChHHHHHHHHhCcccchhhH
Confidence 3445566777888899999999999999998888 8888888888 8888887666544432
Q ss_pred -------------------------HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 139 -------------------------AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 139 -------------------------al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
.+..+|++..+-+.+|..+...|+.+.|.+.+-..+..+-.
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 22335777777777777777777777777777777766543
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0069 Score=51.06 Aligned_cols=96 Identities=9% Similarity=0.069 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc-H
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK-L 163 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~ 163 (229)
..-+..|+.|....+.+ ..+|...... ..+.+.+.+-...|.+++..+|+++..|..-|.-.+..+. .
T Consensus 88 ~rIv~lyr~at~rf~~D-----~~lW~~yi~f------~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni 156 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGD-----VKLWLSYIAF------CKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNI 156 (568)
T ss_pred HHHHHHHHHHHHhcCCC-----HHHHHHHHHH------HHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccch
Confidence 44557789999999887 8888887666 5566668999999999999999999999999998888876 9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 164 DEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 164 ~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+.|...|.++++.+|+.+..|...-++.
T Consensus 157 ~saRalflrgLR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 157 ESARALFLRGLRFNPDSPKLWKEYFRME 184 (568)
T ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 9999999999999999999998766554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00072 Score=35.94 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=23.7
Q ss_pred HHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 109 ~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
++.++|.+ |..+|++++|+.+|++++.+
T Consensus 1 al~~Lg~~------~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRI------YRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHH------HHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHH------HHHcCCHHHHHHHHHHHHHh
Confidence 46789999 99999999999999996644
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.05 Score=42.03 Aligned_cols=122 Identities=16% Similarity=0.093 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.|+.+..-...+--.....+.++|+..|++++.+...... ......+...+.+ +.+++.+.+|-..+.+-...
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~------lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV------LVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH------hhhhHHhhHHHHHHHHhhhH
Confidence 3555555556666677788899999999999888654322 2235566667777 88999999998777664332
Q ss_pred ------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCCcHHHHHHhccCc
Q psy13014 143 ------NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL----DPNNRDAYVATKVSP 191 (229)
Q Consensus 143 ------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~ 191 (229)
.|...+.+...-.++....+|..|..+++..-++ .|++.....+|-..+
T Consensus 180 ~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 180 ADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 2445566666667777888999999999997765 345555555555555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=47.68 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=98.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
......+...+.+.... |.++.|...+.++..... ......+.+.+..+......|+..+|+..++.
T Consensus 143 ~~~~~~~l~~a~~aRk~-g~~~~A~~~l~~~~~~~~------------~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 143 EELAETWLKFAKLARKA-GNFQLALSALNRLFQLNP------------SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred hHHHHHHHHHHHHHHHC-CCcHHHHHHHHHHhccCC------------cccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445566666666666 777777666655431000 00112677888999999999999999999988
Q ss_pred HHHhCCC-C----------------------------CchhhHHHHHhHhhhhhhhHHhhcc------CChHHHHHHHHH
Q psy13014 94 ALRSCPR-S----------------------------CSVSRAVFYANRSAALEKLASYLSL------EKPDQSILACSK 138 (229)
Q Consensus 94 al~~~p~-~----------------------------~~~~~~~~~~~lg~~~~~~~~~~~~------~~~~~A~~~~~~ 138 (229)
.+..... . .....+.++..+|.- .... +..+.++..|.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w------~~~~~~~~~~~~~~~~~~~~~~ 283 (352)
T PF02259_consen 210 LLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKW------LDELYSKLSSESSDEILKYYKE 283 (352)
T ss_pred HHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHH------HHhhccccccccHHHHHHHHHH
Confidence 8882111 1 001223444444444 4444 788999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHhccc-----------------HHHHHHHHHHHHHhCCC
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDK-----------------LDEALADYQKILELDPN 179 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~p~ 179 (229)
+++.+|...++|+..|..+...=. ...|+..|-+++..++.
T Consensus 284 a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 284 ATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999998888765421 23488888888888887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.059 Score=41.67 Aligned_cols=172 Identities=21% Similarity=0.189 Sum_probs=104.3
Q ss_pred HHHHH-HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 20 IYFSC-FILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 20 ~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.|..+ ..+... .+++++...+.+++.... .....-+-+.++-..|...-.+..+.+++.+|+++..+.
T Consensus 33 ~yekAAvafRnA-k~feKakdcLlkA~~~yE----------nnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNA-KKFEKAKDCLLKASKGYE----------NNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhh-ccHHHHHHHHHHHHHHHH----------hcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34443 334444 677777776666652211 111223444566667777788899999999999999885
Q ss_pred CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 99 PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY------LKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 99 p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
-.+.+.+.+ +.+++|.|.....-+++.|++.|.+++.+-..+ ...+-..+.++....++.+|-..+.+
T Consensus 102 ~E~GspdtA------AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 102 VECGSPDTA------AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHhCCcchH------HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 444322212 233444455778899999999999998764333 23355568889999999998877776
Q ss_pred HH----HhCCCcHH--HHHHhccCchHHHhhhhhccccccccc
Q psy13014 173 IL----ELDPNNRD--AYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 173 al----~~~p~~~~--~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
-. +.+..... .+...-.++ .-..++..|.+.+....
T Consensus 176 e~~~~~~~~~y~~~~k~~va~ilv~-L~~~Dyv~aekc~r~~~ 217 (308)
T KOG1585|consen 176 EGVAADKCDAYNSQCKAYVAAILVY-LYAHDYVQAEKCYRDCS 217 (308)
T ss_pred hhhHHHHHhhcccHHHHHHHHHHHH-hhHHHHHHHHHHhcchh
Confidence 43 33333333 222222222 33446666666666543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0014 Score=49.78 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=57.1
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
....++.+.|.+.|.+++.+-|.....|+++|....+.|+++.|...|++.++++|.+...
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 5567899999999999999999999999999999999999999999999999999987653
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.071 Score=46.54 Aligned_cols=102 Identities=21% Similarity=0.197 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
..+.+.|.-+++..+|..+++.|...+.-.|.+.- ..-+....+++.| |..+.+.+.|.+++.+|-+.+|.++
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~C------YL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVC------YLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHhhccccH
Confidence 46778899999999999999999999998876532 2246678889999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
-.-...-.+...-|+-++|+.+..+....
T Consensus 429 l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 429 LCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 88888888888889999999988877655
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00088 Score=33.60 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=29.7
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.++..+|.+ +...++++.|+.++.++++++|.+
T Consensus 2 ~~~~~~a~~------~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNA------YLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHH------HHHHhhHHHHHHHHHHHHccCCCC
Confidence 467889999 999999999999999999998863
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0069 Score=54.09 Aligned_cols=154 Identities=11% Similarity=0.078 Sum_probs=96.8
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH----hhh-----hhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF----YLF-----CSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
.||++.++. .+.+-..+ |-+++|...|.+.- ..+..+.... |.. .....-..-..+++.+..+...+
T Consensus 797 q~~~e~eak--vAvLAieL-gMlEeA~~lYr~ck-R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 797 QNGEEDEAK--VAVLAIEL-GMLEEALILYRQCK-RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hCCcchhhH--HHHHHHHH-hhHHHHHHHHHHHH-HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 345444443 33444556 88888888886553 3333333222 111 11122244567889999999999
Q ss_pred CHHHHHHHHHHH----------HHhCCCCCc-----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-----
Q psy13014 83 QWSESLAKYNEA----------LRSCPRSCS-----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL----- 142 (229)
Q Consensus 83 ~~~~A~~~~~~a----------l~~~p~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 142 (229)
+.+.|+++|+++ +.-+|.... .....+|.+-|.. ....|+.+.|+.+|..|-..
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqY------lES~GemdaAl~~Y~~A~D~fs~Vr 946 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQY------LESVGEMDAALSFYSSAKDYFSMVR 946 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHH------HhcccchHHHHHHHHHhhhhhhhee
Confidence 999999999886 222333211 0125678888888 77788888888888776421
Q ss_pred ----------------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 143 ----------------NPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 143 ----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
...+-.+.|.+|..|...|++.+|+..|.+|-.
T Consensus 947 I~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred eEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 234455677778888888888888888777643
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.011 Score=45.18 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=71.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC--CCchhhHHHHHhHhhhhhhhHHhhccCCh-------HHHHHHHHHHHhcCC---
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPR--SCSVSRAVFYANRSAALEKLASYLSLEKP-------DQSILACSKAITLNP--- 144 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~lg~~~~~~~~~~~~~~~-------~~A~~~~~~al~~~p--- 144 (229)
-+.....+++|++.|.-|+-...- ......+.++..+|.+ |..+|+. .+|...|.++++...
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWl------yR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~ 159 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWL------YRDLGDEENEKRFLRKALEFYEEAYENEDFPI 159 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH------hhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 444567788999998888765221 1112357888899999 8888884 456666666665432
Q ss_pred ---CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 145 ---SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 145 ---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
+.....+.+|.+...+|++++|+.+|.+++.......
T Consensus 160 ~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 160 EGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred CCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 2256888999999999999999999999997755444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.031 Score=40.36 Aligned_cols=113 Identities=11% Similarity=-0.054 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
.-...+.....+-...++.+++...+...-.+.|.. +.+-..-|.. +...|++.+|+..++.+....|.
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~-----~e~~~~~~~l------~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF-----PELDLFDGWL------HIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc-----hHHHHHHHHH------HHHhCCHHHHHHHHHHHhccCCC
Confidence 444567778888888999999999999999999999 9999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+.+--.++.|+..+|+.+-=.. -..+++..+ ++.+......+.
T Consensus 77 ~p~~kALlA~CL~~~~D~~Wr~~-A~evle~~~-d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 77 FPYAKALLALCLYALGDPSWRRY-ADEVLESGA-DPDARALVRALL 120 (160)
T ss_pred ChHHHHHHHHHHHHcCChHHHHH-HHHHHhcCC-ChHHHHHHHHHH
Confidence 99999999999999999764322 334455544 555554444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.02 Score=47.24 Aligned_cols=143 Identities=8% Similarity=-0.023 Sum_probs=93.5
Q ss_pred CchHHHHHHHHHHHHH---hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH---------c
Q psy13014 14 PSFLYTIYFSCFILFI---LFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR---------L 81 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~ 81 (229)
++.+...+..|+++.. . |+.+.|...+...+. ......++.+...|.+|-. .
T Consensus 176 ~~~~~i~~~yafALnRrn~~-gdre~Al~il~~~l~---------------~~~~~~~d~~gL~GRIyKD~~~~s~~~d~ 239 (374)
T PF13281_consen 176 ANQHNIKFQYAFALNRRNKP-GDREKALQILLPVLE---------------SDENPDPDTLGLLGRIYKDLFLESNFTDR 239 (374)
T ss_pred hcchHHHHHHHHHHhhcccC-CCHHHHHHHHHHHHh---------------ccCCCChHHHHHHHHHHHHHHHHcCccch
Confidence 3456677888888888 7 889999888877542 2344556666666666533 3
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH-------H-hc----CCCcHHH
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA-------I-TL----NPSYLKV 149 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a-------l-~~----~p~~~~~ 149 (229)
...++|+..|.+++.++|+. ..-.|++.+ +...|.-.....-..+. + +. .-.+-+.
T Consensus 240 ~~ldkAi~~Y~kgFe~~~~~------Y~GIN~AtL------L~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd 307 (374)
T PF13281_consen 240 ESLDKAIEWYRKGFEIEPDY------YSGINAATL------LMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWD 307 (374)
T ss_pred HHHHHHHHHHHHHHcCCccc------cchHHHHHH------HHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 34899999999999999764 334445555 44444322222111111 1 11 2234455
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
+-.++.+..-.|++++|++.+++++.+.|......
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 66677888889999999999999999987655433
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.19 Score=41.61 Aligned_cols=110 Identities=10% Similarity=0.064 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc---cCChHHHHHHHHH-HHhc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS---LEKPDQSILACSK-AITL 142 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~A~~~~~~-al~~ 142 (229)
.+.+...+=..|....+|+.-+...+..-.+ |.........+.+..|.+ +-+ .|+.++|+..+.. +...
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-p~~~~~~~~~i~~~yafA------LnRrn~~gdre~Al~il~~~l~~~ 212 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTCDVANQHNIKFQYAFA------LNRRNKPGDREKALQILLPVLESD 212 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-CccchhcchHHHHHHHHH------HhhcccCCCHHHHHHHHHHHHhcc
Confidence 4456667777888899999988888777666 211111227777888888 777 8999999999999 5556
Q ss_pred CCCcHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 143 NPSYLKVYQRRARLYQQS---------DKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
.+.+++++...|.+|... ...++|+.+|.++.+++|+.-..
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G 262 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG 262 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence 678899999999998643 35889999999999999865444
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.019 Score=40.07 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 70 SLKDEGNALFRLN---QWSESLAKYNEALR-SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 70 ~~~~~g~~~~~~~---~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..++++.++.... +..+.+.+++..++ -.|.. +-+..+.++.. +.++++|+.++.+++..++..|+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~----rRe~lyYLAvg------~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER----RRECLYYLAVG------HYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc----chhhhhhhHHH------HHHHhhHHHHHHHHHHHHhhCCC
Confidence 3444444444432 23445555555554 22221 24455555555 55566666666666666666665
Q ss_pred cHHHHHH
Q psy13014 146 YLKVYQR 152 (229)
Q Consensus 146 ~~~~~~~ 152 (229)
|..+.-.
T Consensus 104 n~Qa~~L 110 (149)
T KOG3364|consen 104 NRQALEL 110 (149)
T ss_pred cHHHHHH
Confidence 5554333
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.04 Score=38.49 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=65.0
Q ss_pred HHHHHhHhhhhhhhHHhhccCC---hHHHHHHHHHHHh-cCCCc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 107 AVFYANRSAALEKLASYLSLEK---PDQSILACSKAIT-LNPSY-LKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~---~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
....++++.+ +....+ ..+.|..++..++ -.|.. -...|.+|..+.++|+|++++.+....++.+|++.
T Consensus 32 ~~s~f~lAwa------LV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWA------LVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHH------HHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 6778888888 776654 5678899999986 44443 46789999999999999999999999999999999
Q ss_pred HHHHHhccCc
Q psy13014 182 DAYVATKVSP 191 (229)
Q Consensus 182 ~~~~~l~~~~ 191 (229)
++......+.
T Consensus 106 Qa~~Lk~~ie 115 (149)
T KOG3364|consen 106 QALELKETIE 115 (149)
T ss_pred HHHHHHHHHH
Confidence 9987666555
|
|
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0027 Score=51.16 Aligned_cols=117 Identities=26% Similarity=0.288 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CC-----------CchhhHHHHHhHhhhhhhhHHhhccCChHHHHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCP---RS-----------CSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~-----------~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~ 134 (229)
......|...++.++++.|..-|.++.+.-. .. ....+...+.+++.+ -+..+.+..|+.
T Consensus 223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~------~lk~~~~~~a~~ 296 (372)
T KOG0546|consen 223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAV------GLKVKGRGGARF 296 (372)
T ss_pred hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHh------cccccCCCccee
Confidence 4455677888999999999999888876422 11 012235567778888 899999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
....++..++....+++..+..+..+.++++|.++++.+....|++......+..+-
T Consensus 297 ~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 297 RTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred ccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998887776665
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.087 Score=43.16 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.......+...+....+.|.++-|...+.++...++.... ..+.+.+..+.. ....|+..+|+..++..+...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~-~~~~v~~e~akl------lw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES-LLPRVFLEYAKL------LWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC-CCcchHHHHHHH------HHHcCCHHHHHHHHHHHHHHH
Confidence 5577788999999999999999999999999987633210 026677777888 889999999999998888711
Q ss_pred ---C-------------------------------CcHHHHHHHHHHHHhc------ccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 144 ---P-------------------------------SYLKVYQRRARLYQQS------DKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 144 ---p-------------------------------~~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
+ ..++++..+|...... +..++++..|.++++++|+...+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~ 294 (352)
T PF02259_consen 215 LSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKA 294 (352)
T ss_pred hhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHH
Confidence 1 0134566677777777 88899999999999999999999
Q ss_pred HHHhccCch
Q psy13014 184 YVATKVSPD 192 (229)
Q Consensus 184 ~~~l~~~~~ 192 (229)
+..++..+.
T Consensus 295 ~~~~a~~~~ 303 (352)
T PF02259_consen 295 WHSWALFND 303 (352)
T ss_pred HHHHHHHHH
Confidence 999998874
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.042 Score=49.38 Aligned_cols=117 Identities=13% Similarity=0.031 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-Hhhh---hhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVL-FYLF---CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
..++..+.-+-.. ++++.|.++|++.-.-..-+.+.+ .+.. ..-....+...|..-|...-..|+.+.|+.+|..
T Consensus 859 ~Tyy~yA~~Lear-~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 859 NTYYNYAKYLEAR-RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhHHHHHHHHHhh-ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3567777777777 899999999987643222122111 1111 1112334557788889999999999999999988
Q ss_pred HHHhCCC--------CCc--------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 94 ALRSCPR--------SCS--------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 94 al~~~p~--------~~~--------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
|-.-..- ..+ .....+.+.+|.. |...|+..+|+.+|.+|-.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~------YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARM------YENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHH------hhhhHHHHHHHHHHHHHHH
Confidence 7443211 000 0114567778888 9999999999999988754
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.082 Score=40.43 Aligned_cols=86 Identities=15% Similarity=-0.015 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHccC-------HHHHHHHHHHHHHhCCCC-CchhhHHHHHhHhhhhhhhHHhhccCChHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQ-------WSESLAKYNEALRSCPRS-CSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p~~-~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~ 134 (229)
.....+..+..+|..|...++ ..+|+..|.+++...... ...+...+.+.+|.+ ..++|++++|+.
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL------~rrlg~~~eA~~ 186 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGEL------NRRLGNYDEAKR 186 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHH------HHHhCCHHHHHH
Confidence 344677788888888888888 456666666666654331 122346788889999 999999999999
Q ss_pred HHHHHHhcCCCcH-HHHHHHH
Q psy13014 135 ACSKAITLNPSYL-KVYQRRA 154 (229)
Q Consensus 135 ~~~~al~~~p~~~-~~~~~la 154 (229)
+|.+++.....+. ..+..+|
T Consensus 187 ~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 187 WFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHcCCCCCCcHHHHHHH
Confidence 9999998754333 3444444
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0079 Score=39.23 Aligned_cols=61 Identities=20% Similarity=0.126 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc--HHHHHHhccCc
Q psy13014 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN--RDAYVATKVSP 191 (229)
Q Consensus 131 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~ 191 (229)
..+..+++.+..+|++..+.+.+|..+...|++++|++.+-.++..++++ ..+...+-.++
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f 68 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF 68 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999876 44544444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.17 Score=37.54 Aligned_cols=107 Identities=14% Similarity=0.076 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
....-..++..+|..|.+.|+.++|++.|.++....... ....+.++++-.+ .+..+++.....+..++-..
T Consensus 31 ~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~--~~~id~~l~~irv------~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 31 GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP--GHKIDMCLNVIRV------AIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH--HHHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHH
Confidence 334556789999999999999999999999977754332 2346777777778 88899999999999888665
Q ss_pred C--CCcHH----HHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 143 N--PSYLK----VYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 143 ~--p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
- +.+.. .-...|..+...++|.+|.+.|-.+....
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 3 22332 23445777888999999999987665443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.037 Score=36.08 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhcccHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY--LKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~ 164 (229)
.+..+++.+..+|++ ..+.+.+|.. +...|++++|++.+-.++..+++. ..+--.+-.++..+|.-+
T Consensus 7 ~~~al~~~~a~~P~D-----~~ar~~lA~~------~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPDD-----LDARYALADA------LLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT------HHHHHHHHHH------HHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 466788999999999 9999999999 999999999999999999998765 444455555555555544
Q ss_pred HHHHHHH
Q psy13014 165 EALADYQ 171 (229)
Q Consensus 165 ~A~~~~~ 171 (229)
.-+..++
T Consensus 76 plv~~~R 82 (90)
T PF14561_consen 76 PLVSEYR 82 (90)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.07 Score=39.77 Aligned_cols=101 Identities=10% Similarity=0.020 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy13014 21 YFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR 100 (229)
Q Consensus 21 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 100 (229)
+.++..+... ++++.|...++..+.. ..+.--.+-+-.+++.+.+++|++++|+..++..... .
T Consensus 93 L~lAk~~ve~-~~~d~A~aqL~~~l~~-------------t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--~ 156 (207)
T COG2976 93 LELAKAEVEA-NNLDKAEAQLKQALAQ-------------TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--S 156 (207)
T ss_pred HHHHHHHHhh-ccHHHHHHHHHHHHcc-------------chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--c
Confidence 3345566666 7777777766655411 1122234456778999999999999999987544332 1
Q ss_pred CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 101 SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 101 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
. .+.....+|.+ +...|+-++|...|.++++..+..+
T Consensus 157 w----~~~~~elrGDi------ll~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 157 W----AAIVAELRGDI------LLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred H----HHHHHHHhhhH------HHHcCchHHHHHHHHHHHHccCChH
Confidence 1 14446668999 9999999999999999999975543
|
|
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.14 Score=45.07 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=101.0
Q ss_pred CchHHHHHHHHHHHHHh-h---hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc-----CH
Q psy13014 14 PSFLYTIYFSCFILFIL-F---SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN-----QW 84 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~-~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~ 84 (229)
-.+..+.+.+|.++... . .+.+.|..+++.+..... .......+.+.+.+|.+|.+.. ++
T Consensus 241 ~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~-----------~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~ 309 (552)
T KOG1550|consen 241 LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFK-----------KAATKGLPPAQYGLGRLYLQGLGVEKIDY 309 (552)
T ss_pred hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHH-----------HHHhhcCCccccHHHHHHhcCCCCccccH
Confidence 34566677777776643 1 356777777766653200 0111225567888999998843 78
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC---ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc-
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE---KPDQSILACSKAITLNPSYLKVYQRRARLYQQS- 160 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~- 160 (229)
..|..+|.++-.... +.+.+.+|.+ +..-. +...|..+|..|... .+..+.+++|.|+..-
T Consensus 310 ~~A~~~~~~aA~~g~-------~~a~~~lg~~------~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 310 EKALKLYTKAAELGN-------PDAQYLLGVL------YETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGL 374 (552)
T ss_pred HHHHHHHHHHHhcCC-------chHHHHHHHH------HHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCC
Confidence 889999999998754 6678889999 76554 678999999998774 5788899999998754
Q ss_pred ---ccHHHHHHHHHHHHHhC
Q psy13014 161 ---DKLDEALADYQKILELD 177 (229)
Q Consensus 161 ---~~~~~A~~~~~~al~~~ 177 (229)
-+...|+.++.++.+.+
T Consensus 375 gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc
Confidence 47899999999999998
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.1 Score=43.48 Aligned_cols=62 Identities=24% Similarity=0.411 Sum_probs=55.0
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
..+-..+..| |+.+++.+-|+.+.-+.|.++|....-+...|.|+..+.+|.+|-..+.-+.
T Consensus 228 SfIetklv~C------YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 228 SFIETKLVTC------YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHHHHh------hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668889 9999999999999999999999999999999999999999999887766554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.061 Score=38.85 Aligned_cols=84 Identities=17% Similarity=0.089 Sum_probs=72.3
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
......+..+ -...++.+.+...+.-.--+.|..+..-..-|.++...|++.+|+..++.+....|..+.....
T Consensus 10 v~gLie~~~~------al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 10 VGGLIEVLSV------ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHH------HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 4455555666 6778899999999998889999999999999999999999999999999999999999988888
Q ss_pred hccCchHHHhh
Q psy13014 187 TKVSPDLKLKE 197 (229)
Q Consensus 187 l~~~~~~~~~~ 197 (229)
++.|+ ..+++
T Consensus 84 lA~CL-~~~~D 93 (160)
T PF09613_consen 84 LALCL-YALGD 93 (160)
T ss_pred HHHHH-HHcCC
Confidence 88887 44443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.29 Score=38.92 Aligned_cols=128 Identities=7% Similarity=-0.018 Sum_probs=81.4
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|..++..+|++..+...++.++... |+.+.+...+...-...+ ........+...+..-....++.
T Consensus 157 ~~~al~~~~~~~~~~~~la~~~l~~-g~~e~A~~iL~~lP~~~~------------~~~~~~l~a~i~ll~qaa~~~~~- 222 (304)
T COG3118 157 LKQALQAAPENSEAKLLLAECLLAA-GDVEAAQAILAALPLQAQ------------DKAAHGLQAQIELLEQAAATPEI- 222 (304)
T ss_pred HHHHHHhCcccchHHHHHHHHHHHc-CChHHHHHHHHhCcccch------------hhHHHHHHHHHHHHHHHhcCCCH-
Confidence 6778888999999999999999999 988888776644321000 00011111122222222222222
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhcc
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS--YLKVYQRRARLYQQSD 161 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~ 161 (229)
..+++.+..+|++ ..+.+.+|.. +...|+++.|.+.+-..++.+-. +..+--.+-.++...|
T Consensus 223 ---~~l~~~~aadPdd-----~~aa~~lA~~------~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 ---QDLQRRLAADPDD-----VEAALALADQ------LHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred ---HHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 2355567778988 9999999999 99999999999999888877543 3344444444444444
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.39 Score=39.22 Aligned_cols=154 Identities=14% Similarity=0.066 Sum_probs=101.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhh------------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSE------------IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLK 72 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (229)
-|++.+..+|++..++.-+...--.. -. .+..+..+++++ ...|.+...+.
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~-~~~~~~~~~~~~a~~E~klsilerAL----------------~~np~~~~L~l 69 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDEL-FRLQSSSKAERRALAERKLSILERAL----------------KHNPDSERLLL 69 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHh-ccccccchhhHHHHHHHHHHHHHHHH----------------HhCCCCHHHHH
Confidence 47788999999999998876544433 21 112222233333 44566666676
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-----C---
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-----P--- 144 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p--- 144 (229)
.+=.+..+....++....+++++..+|.+ ..+|...-.. .++ .+..-.+......|.+++..- .
T Consensus 70 ~~l~~~~~~~~~~~l~~~we~~l~~~~~~-----~~LW~~yL~~--~q~-~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~ 141 (321)
T PF08424_consen 70 GYLEEGEKVWDSEKLAKKWEELLFKNPGS-----PELWREYLDF--RQS-NFASFTVSDVRDVYEKCLRALSRRRSGRMT 141 (321)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCC-----hHHHHHHHHH--HHH-HhccCcHHHHHHHHHHHHHHHHHhhccccc
Confidence 66667777788888899999999999988 6666554333 000 112234666666666666431 0
Q ss_pred ----------CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 145 ----------SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 145 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
.-...+.++.......|-.+.|+..++-.++++--.|..
T Consensus 142 ~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 142 SHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES 190 (321)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence 012356677888889999999999999999997544433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=31.43 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
.++.++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677888888888888888888887765
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.51 Score=39.19 Aligned_cols=158 Identities=14% Similarity=0.069 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH-----HHHHHHHHH------------h-hhhhhhHHHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFY-----IQFIFHVLF------------Y-LFCSQKLEQTAISLKDEGNAL 78 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~g~~~ 78 (229)
+..+.+-+..-... |+++.+...|+..+.. .......+. + .......|..++++...=...
T Consensus 120 pLIhlLeAQaal~e-G~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLE-GDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhc-CchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 45666777777777 9999998888644310 000000000 0 011223344445555555556
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy13014 79 FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ 158 (229)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 158 (229)
...|+++.|++..+......--.. ..+-...+..+--.+.-.-.-+...|..+...++++.|+-..+-..-+..++
T Consensus 199 ~~~gdWd~AlkLvd~~~~~~vie~----~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf 274 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAAKVIEK----DVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALF 274 (531)
T ss_pred HhcCChHHHHHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHH
Confidence 667777777777655544321110 1111112222100000122235667777777777788877777777788888
Q ss_pred hcccHHHHHHHHHHHHHhCCC
Q psy13014 159 QSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~~p~ 179 (229)
..|+..++-..++.+-+.+|.
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred hccchhhhhhHHHHHHhcCCC
Confidence 888888888888888777774
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.51 Score=37.71 Aligned_cols=115 Identities=19% Similarity=0.129 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC-------ChHH
Q psy13014 63 KLEQTAISLKDEGNALFR----LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE-------KPDQ 131 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-------~~~~ 131 (229)
.....+.+.+.+|..+.. ..+..+|...|.++....-... ......+|.+ |..-. +...
T Consensus 104 a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a----~~~~~~l~~~------~~~g~~~~~~~~~~~~ 173 (292)
T COG0790 104 AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA----ALAMYRLGLA------YLSGLQALAVAYDDKK 173 (292)
T ss_pred hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH----HHHHHHHHHH------HHcChhhhcccHHHHh
Confidence 344566678889998887 5699999999999999843320 2336777777 65431 3347
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 132 SILACSKAITLNPSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|+..|.++-... ++.+.+.+|.+|.. ..++++|+.+|.++-+... ..+.+.++.++
T Consensus 174 A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~~ 233 (292)
T COG0790 174 ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMY 233 (292)
T ss_pred HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHH
Confidence 999999988776 78889999988865 3489999999999999887 77777777443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.025 Score=38.09 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=66.0
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHhccc-----------HHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYL---KVYQRRARLYQQSDK-----------LDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
++..|++-+|++..+..+...+++. ..+..-|.++..+.. .--|+++|.++..+.|......+.++
T Consensus 6 ~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la 85 (111)
T PF04781_consen 6 YFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELA 85 (111)
T ss_pred HHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHH
Confidence 8899999999999999999988776 445566888865542 34589999999999999988888887
Q ss_pred cCchHHHhhhhhccccccccc
Q psy13014 189 VSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 189 ~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.=+ .-...+.++++.-.+.+
T Consensus 86 ~~l-~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 86 SQL-GSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHh-hhHHHHHHHHHHHHHHh
Confidence 654 33455666666655554
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.011 Score=45.00 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=54.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
...+.++.+.|.+.|.+++.+-|.. ..-|+.+|.. ..+.|+.+.|.+.|++.++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w-----~~gwfR~g~~------~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW-----AAGWFRLGEY------TEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh-----hhhhhhcchh------hhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456788999999999999999998 9999999999 9999999999999999999998763
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.12 Score=42.27 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHh------hccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASY------LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
.-+++.++.+|.+ ..+|..+...-.++-.. ....-.+.-+..+++|++.+|++...+..+-.+..+..+
T Consensus 6 ~el~~~v~~~P~d-----i~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~ 80 (321)
T PF08424_consen 6 AELNRRVRENPHD-----IEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD 80 (321)
T ss_pred HHHHHHHHhCccc-----HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 4578889999998 88888887661111000 001124667889999999999999999998888899999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.++...-+++++..+|++...|..+-...
T Consensus 81 ~~~l~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 81 SEKLAKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999887665443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.038 Score=46.76 Aligned_cols=123 Identities=16% Similarity=0.115 Sum_probs=102.4
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
....|+...|......+++..|.. +......+.+ ...+|.|+++.+.+..+-.+-..-..+..-+-...
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~-----p~~i~l~~~i------~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQD-----PVLIQLRSVI------FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCC-----chhhHHHHHH------HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 356788889999999999999998 8888889999 99999999999988776665555556666677788
Q ss_pred HhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 158 QQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
..+|++++|.......+.-.-++++...--+... ..++-+.++...+.+.+ ++|
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa-~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEVLTVAAGSA-DALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhheeeecccH-HHHhHHHHHHHHHHHHhccCC
Confidence 8999999999999999988888888765555444 78888999999999998 777
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0072 Score=51.97 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=88.9
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhc
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYL-KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGA 201 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a 201 (229)
+...|+...|++++..|+...|... ....++|.+....|-.-.|-..+.+++.+.-+.+-..+.+|.++ .-+++..+|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~-l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAY-LALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhH-HHHhhhHHH
Confidence 6678999999999999999999764 46889999999999999999999999999988888999999999 889999999
Q ss_pred cccccccc-ccCCCcccccCC
Q psy13014 202 TKLSPDVF-LHPGQPQIQHNP 221 (229)
Q Consensus 202 ~~~~~~~~-~~p~~~~~~~~~ 221 (229)
++.+..++ ++|+++.++...
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHH
Confidence 99999999 999998877653
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.74 Score=38.33 Aligned_cols=148 Identities=14% Similarity=0.014 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q psy13014 21 YFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR 100 (229)
Q Consensus 21 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 100 (229)
++++.+++.-+++++++...-+..+..+.... ....+--.+..|+.+..++-..++...-...+...++...-
T Consensus 129 ~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~n-------rRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtL 201 (493)
T KOG2581|consen 129 YLLVLLFLIDQKEYKEADKISDALLASISIQN-------RRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATL 201 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhh
Confidence 33444444433677777776655553322111 11123345567888888888888877766666666554321
Q ss_pred C-CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--CC--CcHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 101 S-CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--NP--SYLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 101 ~-~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
- .....+.+.+.+-.+ |..-+.|++|-....++.-- .. ..+..++.+|.+..-.++|..|.+++-+|+.
T Consensus 202 rhd~e~qavLiN~LLr~------yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 202 RHDEEGQAVLINLLLRN------YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred cCcchhHHHHHHHHHHH------HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 1 111236666667777 88999999998888876522 12 2355678889999999999999999999999
Q ss_pred hCCCcH
Q psy13014 176 LDPNNR 181 (229)
Q Consensus 176 ~~p~~~ 181 (229)
..|.+.
T Consensus 276 kapq~~ 281 (493)
T KOG2581|consen 276 KAPQHA 281 (493)
T ss_pred hCcchh
Confidence 999743
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.29 Score=42.46 Aligned_cols=113 Identities=14% Similarity=0.018 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHH-HHHHhcC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILAC-SKAITLN 143 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~-~~al~~~ 143 (229)
++.....+ +.......+....+......++..+|.+ ..++.++|.+ ....|....++..+ ..+....
T Consensus 65 ~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~L~~a------le~~~~~~~~~~~~~~~a~~~~ 132 (620)
T COG3914 65 PELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPEN-----CPAVQNLAAA------LELDGLQFLALADISEIAEWLS 132 (620)
T ss_pred HHHHHHHH-HHhhccccccchhHHHHHhhhHhcCccc-----chHHHHHHHH------HHHhhhHHHHHHHHHHHHHhcC
Confidence 33333344 6777788889989999999999999999 8999999999 66666655555544 4588889
Q ss_pred CCcHHHHHHH------HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 144 PSYLKVYQRR------ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 144 p~~~~~~~~l------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
|++......+ +.....+|+..++....++++.+.|.++.....+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~ 184 (620)
T COG3914 133 PDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMT 184 (620)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHH
Confidence 9987765555 888889999999999999999999998766554443
|
|
| >KOG0530|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.32 Score=38.12 Aligned_cols=118 Identities=13% Similarity=0.152 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChH-HHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFR-LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD-QSILACSKA 139 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~-~A~~~~~~a 139 (229)
...|.+-.+|.-.-.++.. ..+..+-++++...+.-+|.+ ..+|..+-.+ ....|++. .-+++.+.+
T Consensus 71 ~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKN-----YQvWHHRr~i------ve~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 71 RLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKN-----YQVWHHRRVI------VELLGDPSFRELEFTKLM 139 (318)
T ss_pred HhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccc-----hhHHHHHHHH------HHHhcCcccchHHHHHHH
Confidence 3445555555555555544 344677788889999999999 8899988888 77788887 788999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
+..+..+--+|...-.+...-+.++.-+.+....++.|-.+..+|...-.+
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv 190 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFV 190 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence 999999999999999999999999999999999999998888888765444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.99 Score=38.21 Aligned_cols=105 Identities=16% Similarity=0.064 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCCch--------------------------------------
Q psy13014 64 LEQTAISLKDEGNALFRLNQ-WSESLAKYNEALRSCPRSCSV-------------------------------------- 104 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~-------------------------------------- 104 (229)
....+..+...|.-+...|. -++|+..++.+++..+.+...
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 34556667777888888888 788888888888877665220
Q ss_pred ---hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 105 ---SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 105 ---~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
...+.-+.++.+.. ++..|+|.++.-+..-..++.| ++.++..+|.|+...++|++|..++.+.
T Consensus 455 i~i~e~eian~LaDAEy----Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEY----LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHH----HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 00111111111100 6788999999999999999999 8999999999999999999999988654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.38 Score=41.26 Aligned_cols=143 Identities=13% Similarity=0.044 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL- 142 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~- 142 (229)
-.++-.+++.++.+|.+. ..++-...+++.++.+-++ ...-..++.. |.+ ++-+++..+|.+++..
T Consensus 95 ~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnD-----vv~~ReLa~~------yEk-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 95 YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFND-----VVIGRELADK------YEK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchh-----HHHHHHHHHH------HHH-hchhhHHHHHHHHHHHh
Confidence 346667888999999888 6677788888888887766 6666667766 444 6666666666666532
Q ss_pred -------------------CCCcHHHHHH------------HH--------HHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 143 -------------------NPSYLKVYQR------------RA--------RLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 143 -------------------~p~~~~~~~~------------la--------~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
-|++.+..+. +| .-|....++.+|+..+...++.+..+..+
T Consensus 162 I~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred cchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence 2333322221 11 22445678999999999999999988888
Q ss_pred HHHhccCchH-------------------HHhhhhhccccccccc-ccCCCccccc
Q psy13014 184 YVATKVSPDL-------------------KLKEKNGATKLSPDVF-LHPGQPQIQH 219 (229)
Q Consensus 184 ~~~l~~~~~~-------------------~~~~~~~a~~~~~~~~-~~p~~~~~~~ 219 (229)
..++-.-++. .-+++..++.+|+..+ ++.+||-..+
T Consensus 242 r~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfHq 297 (711)
T COG1747 242 RKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFHQ 297 (711)
T ss_pred HHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEec
Confidence 7776555421 1234677788888887 7878876554
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.75 Score=36.73 Aligned_cols=140 Identities=13% Similarity=-0.007 Sum_probs=96.0
Q ss_pred cCCchHHHHHHHHHHHHHhh---hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc------
Q psy13014 12 KNPSFLYTIYFSCFILFILF---SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN------ 82 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------ 82 (229)
.+..++.+.+.+|..+..-. .+..+|..+|+++... ..+.-......+|..+..-.
T Consensus 104 a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~---------------g~~~a~~~~~~l~~~~~~g~~~~~~~ 168 (292)
T COG0790 104 AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL---------------GNVEAALAMYRLGLAYLSGLQALAVA 168 (292)
T ss_pred hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc---------------CChhHHHHHHHHHHHHHcChhhhccc
Confidence 34566777788887777631 3677777777766521 01111334566666665531
Q ss_pred -CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 83 -QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS----LEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 83 -~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+...|...|.++-... + +.+...+|.+ |.. ..++.+|+.+|.++-+... ..+.+.++ ++
T Consensus 169 ~~~~~A~~~~~~aa~~~--~-----~~a~~~lg~~------y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~ 232 (292)
T COG0790 169 YDDKKALYLYRKAAELG--N-----PDAQLLLGRM------YEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LM 232 (292)
T ss_pred HHHHhHHHHHHHHHHhc--C-----HHHHHHHHHH------HHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HH
Confidence 2347888888888875 4 7888999988 644 4589999999999999877 88889999 66
Q ss_pred Hhcc---------------cHHHHHHHHHHHHHhCCCcHH
Q psy13014 158 QQSD---------------KLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 158 ~~~~---------------~~~~A~~~~~~al~~~p~~~~ 182 (229)
...| +...|..++.++....+....
T Consensus 233 ~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 272 (292)
T COG0790 233 YLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNAC 272 (292)
T ss_pred HhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHH
Confidence 6555 777788888777766655443
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.014 Score=46.50 Aligned_cols=91 Identities=8% Similarity=0.049 Sum_probs=75.1
Q ss_pred HHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHhcccHHHHHH
Q psy13014 90 KYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR-RARLYQQSDKLDEALA 168 (229)
Q Consensus 90 ~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~ 168 (229)
.|.++-...|++ +..|...+.. ..+.+.|.+--..|..+++.+|.+++.|.. -+.-+...++++.+..
T Consensus 95 ~~~R~tnkff~D-----~k~w~~y~~Y------~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra 163 (435)
T COG5191 95 ELYRSTNKFFND-----PKIWSQYAAY------VIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRA 163 (435)
T ss_pred eeehhhhcCCCC-----cHHHHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHH
Confidence 345555556777 8888887777 666778888889999999999999999887 4566778899999999
Q ss_pred HHHHHHHhCCCcHHHHHHhccCc
Q psy13014 169 DYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 169 ~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.|.+++..+|++|..|...-++.
T Consensus 164 ~f~~glR~N~~~p~iw~eyfr~E 186 (435)
T COG5191 164 MFLKGLRMNSRSPRIWIEYFRME 186 (435)
T ss_pred HHHhhhccCCCCchHHHHHHHHH
Confidence 99999999999999998766554
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.57 Score=38.97 Aligned_cols=171 Identities=17% Similarity=0.169 Sum_probs=111.0
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHccC--H
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF-YLFCSQKLEQTAISLKDEGNALFRLNQ--W 84 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~--~ 84 (229)
+.++.||+...++-..-.++....-.. ..+..++. ..+...+. ...+....|+.-.+|+....++.+.+. +
T Consensus 54 ~ll~~npe~~t~wN~Rr~~~~~r~~~~--~~~~~ek~----~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~ 127 (421)
T KOG0529|consen 54 ELLEKNPEFYTVWNYRRLIIEERLTRA--QLEPLEKQ----ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDW 127 (421)
T ss_pred HHHhhCchhhhhhhhHHHHHHHhhhhh--cCCHHHHH----HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchH
Confidence 456788888887766544444331210 01111110 01111111 112336778888999999998887654 6
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh-----
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ----- 159 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----- 159 (229)
..-+...+++++.+|.+ -.+|..+=.+++.+ -...+...+-+++..++|.-++.|-.+|.....++..
T Consensus 128 ~~EL~lcek~L~~D~RN-----fh~W~YRRfV~~~~--~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~ 200 (421)
T KOG0529|consen 128 NTELQLCEKALKQDPRN-----FHAWHYRRFVVEQA--ERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKE 200 (421)
T ss_pred HHHHHHHHHHHhcCccc-----ccchHHHHHHHHHH--hcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcccc
Confidence 88889999999999998 66666655441100 1111235677899999999999999999999888772
Q ss_pred -cc------cHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 160 -SD------KLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 160 -~~------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.| -...-++....|+-.+|+|..+|...-++.
T Consensus 201 ~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl 239 (421)
T KOG0529|consen 201 ADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLL 239 (421)
T ss_pred ccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhh
Confidence 23 245667788889999999999887655554
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.87 Score=37.06 Aligned_cols=172 Identities=12% Similarity=0.030 Sum_probs=100.6
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-hh---h----hh-hhHHHHHHHHHHHHHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF-YL---F----CS-QKLEQTAISLKDEGNA 77 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~---~----~~-~~~~~~~~~~~~~g~~ 77 (229)
.++|++||+...++.+++.--. .-+.+|...+++++........... .+ . .. .+..-..-+-..+++|
T Consensus 208 ~~ALeIN~eCA~AyvLLAEEEa---~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMC 284 (556)
T KOG3807|consen 208 YQALEINNECATAYVLLAEEEA---TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMC 284 (556)
T ss_pred HHHHhcCchhhhHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHHHH
Confidence 3588999999999888875433 2355666677666655432222111 00 0 00 0111122345689999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-PSYLKVYQRRARL 156 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 156 (229)
..++|+..+|++.+....+-.|-.. ...++-++-.+ +..++-|......+.+-=.+. |.++...+.-|..
T Consensus 285 ARklGrlrEA~K~~RDL~ke~pl~t---~lniheNLiEa------lLE~QAYADvqavLakYDdislPkSA~icYTaALL 355 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMKEFPLLT---MLNIHENLLEA------LLELQAYADVQAVLAKYDDISLPKSAAICYTAALL 355 (556)
T ss_pred HHHhhhHHHHHHHHHHHhhhccHHH---HHHHHHHHHHH------HHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHH
Confidence 9999999999999999988877431 24456666666 555555544433333322221 4444333322211
Q ss_pred H-------------Hhcc---cHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 157 Y-------------QQSD---KLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 157 ~-------------~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
- .+.| --..|++.+.++++.+|..+.....+..+
T Consensus 356 K~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ksl 405 (556)
T KOG3807|consen 356 KTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSL 405 (556)
T ss_pred HHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHhc
Confidence 1 1111 12358999999999999998877766544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.47 Score=33.85 Aligned_cols=86 Identities=7% Similarity=-0.158 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
..+...........+.+++...+...--+.|+. +.+-..-|.+ +...|++.+|+..++.+.+-.+..+.
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~-----~e~d~~dg~l------~i~rg~w~eA~rvlr~l~~~~~~~p~ 79 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNL-----KELDMFDGWL------LIARGNYDEAARILRELLSSAGAPPY 79 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----cccchhHHHH------HHHcCCHHHHHHHHHhhhccCCCchH
Confidence 344455555566899999999999888899998 8888999999 99999999999999999998888888
Q ss_pred HHHHHHHHHHhcccHHH
Q psy13014 149 VYQRRARLYQQSDKLDE 165 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~ 165 (229)
.--.++.|+..+|+.+-
T Consensus 80 ~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 80 GKALLALCLNAKGDAEW 96 (153)
T ss_pred HHHHHHHHHHhcCChHH
Confidence 88889999999998764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.11 Score=48.22 Aligned_cols=117 Identities=14% Similarity=0.018 Sum_probs=87.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHH-hhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-YLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
.....++...+.|++|+..|++.-...|.- .+-.++.+..|..+..++. ......+++|+.-|++. .-.|.-+--|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 555 (932)
T PRK13184 479 LAVPDAFLAEKLYDQALIFYRRIRESFPGR--KEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEY 555 (932)
T ss_pred ccCcHHHHhhHHHHHHHHHHHHHhhcCCCc--ccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHH
Confidence 345567778899999999999999998864 1125677888877332222 11123588888888864 4457777789
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
...|.+|..+|+|++-++++.-|++..|.+|..-...-.+.
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLV 596 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 99999999999999999999999999999987655444443
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.77 Score=39.15 Aligned_cols=144 Identities=6% Similarity=-0.028 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.+..++.+|...... +.++.|...|..++.... ...-.+.+-.++|..|...++-++ .|+-.-
T Consensus 366 ~~~ih~LlGlys~sv-~~~enAe~hf~~a~k~t~-------------~~dl~a~~nlnlAi~YL~~~~~ed---~y~~ld 428 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSV-NCYENAEFHFIEATKLTE-------------SIDLQAFCNLNLAISYLRIGDAED---LYKALD 428 (629)
T ss_pred HHHHHHHHhhHhhhc-chHHHHHHHHHHHHHhhh-------------HHHHHHHHHHhHHHHHHHhccHHH---HHHHHH
Confidence 345666777666666 777777777766653211 112244556678888988776555 444444
Q ss_pred HhCCCCCc-----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhcccHH
Q psy13014 96 RSCPRSCS-----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY------LKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 96 ~~~p~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~ 164 (229)
.+.|.+.. .....+++..|.. .+..+++.+|.....+.++..... .-.+..+|.+..-.|+..
T Consensus 429 ~i~p~nt~s~ssq~l~a~~~~v~glf------af~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~ 502 (629)
T KOG2300|consen 429 LIGPLNTNSLSSQRLEASILYVYGLF------AFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTV 502 (629)
T ss_pred hcCCCCCCcchHHHHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 45555322 2356778888888 899999999999999999875211 224666788888999999
Q ss_pred HHHHHHHHHHHhC---CCcHH
Q psy13014 165 EALADYQKILELD---PNNRD 182 (229)
Q Consensus 165 ~A~~~~~~al~~~---p~~~~ 182 (229)
++....+-++++. |+.+.
T Consensus 503 es~nmvrpamqlAkKi~Di~v 523 (629)
T KOG2300|consen 503 ESRNMVRPAMQLAKKIPDIPV 523 (629)
T ss_pred HHHhccchHHHHHhcCCCchH
Confidence 9988888887664 45443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.04 Score=29.67 Aligned_cols=31 Identities=29% Similarity=0.295 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
+.++..+|.++...|++++|..++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4578899999999999999999999999874
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.96 Score=36.09 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=94.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC----CCCC----
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN-QWSESLAKYNEALRSC----PRSC---- 102 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~----p~~~---- 102 (229)
|+.+.|...+.|+-.... ..........+..+++.|......+ +++.|+..+++++++- +...
T Consensus 7 ~~~~~A~~~~~K~~~~~~--------~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLN--------SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred CCHHHHHHHHHHhhhHHh--------cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 778888888877653321 1112334577789999999999999 9999999999999883 2111
Q ss_pred -chhhHHHHHhHhhhhhhhHHhhccCChH---HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy13014 103 -SVSRAVFYANRSAALEKLASYLSLEKPD---QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178 (229)
Q Consensus 103 -~~~~~~~~~~lg~~~~~~~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 178 (229)
.+.+..++..++.+ +...+.++ +|....+.+-...|+.+..+...=.++...++.+++.+.+.+.+.--+
T Consensus 79 ~~elr~~iL~~La~~------~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 79 GSELRLSILRLLANA------YLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHHH------HHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 13466778888888 88877655 455566666666788888776655556568888888888888776543
|
It is also involved in sporulation []. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.11 Score=34.06 Aligned_cols=61 Identities=18% Similarity=0.166 Sum_probs=47.3
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCCc----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSCS----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.....++|..|++.+.+.+........ .....+..++|.+ +...|++++|+..+++++.+-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~------~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAEL------HRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHH
Confidence 346789999999999888887543321 1234567788888 999999999999999998874
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.49 Score=35.06 Aligned_cols=106 Identities=8% Similarity=-0.018 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.++.-+|..+... |+.+.|...|.+....- .........++.+-.+.+..+++.....+..++-..
T Consensus 37 ~~~~~l~~~~~~~-Gd~~~A~k~y~~~~~~~-------------~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKI-GDLEEALKAYSRARDYC-------------TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHhhhc-------------CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4677889999999 99999999998765221 244567788889999999999999999999999877
Q ss_pred CCCCCchh-hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 98 CPRSCSVS-RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 98 ~p~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
-....+.. +..+...-|.. ++..++|..|...|-.++.-.
T Consensus 103 ~~~~~d~~~~nrlk~~~gL~------~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 103 IEKGGDWERRNRLKVYEGLA------NLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HhccchHHHHHHHHHHHHHH------HHHhchHHHHHHHHHccCcCC
Confidence 54432211 23344555666 778999999999887776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.69 Score=36.42 Aligned_cols=75 Identities=21% Similarity=0.159 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
...++=..+...++++.|..+.++.+.++|.+ +.-+..+|.+ |.++|-+..|++.+...++.-|+.+.+
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~d-----p~eirDrGli------Y~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPED-----PYEIRDRGLI------YAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCC-----hhhccCcHHH------HHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34445556777888888888888888888888 7778888888 888888888888888888888888776
Q ss_pred HHHHHH
Q psy13014 150 YQRRAR 155 (229)
Q Consensus 150 ~~~la~ 155 (229)
-...+.
T Consensus 252 ~~ir~~ 257 (269)
T COG2912 252 EMIRAQ 257 (269)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.3 Score=38.53 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=94.4
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH----HHHHHHHHhhh---------------hhhhHHHHH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYI----QFIFHVLFYLF---------------CSQKLEQTA 68 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~---------------~~~~~~~~~ 68 (229)
-+--.++.....|......-... |+++.....|++++... .++...+.|+. +.--.+..+
T Consensus 288 hvkpl~~aql~nw~~yLdf~i~~-g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~ 366 (577)
T KOG1258|consen 288 HVKPLDQAQLKNWRYYLDFEITL-GDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP 366 (577)
T ss_pred ccCcccHHHHHHHHHHhhhhhhc-ccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc
Confidence 33334445555555554545555 77777777776665321 12222222221 111223444
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHH---HHHHHHhcCCC
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL---ACSKAITLNPS 145 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~---~~~~al~~~p~ 145 (229)
.+....+...-..|++..|..++++.....|+. ..+-...... ....|+.+.+-. .+.....-..+
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~-----v~~~l~~~~~------e~r~~~~~~~~~~~~l~s~~~~~~~~ 435 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRIESEYPGL-----VEVVLRKINW------ERRKGNLEDANYKNELYSSIYEGKEN 435 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhCCch-----hhhHHHHHhH------HHHhcchhhhhHHHHHHHHhcccccC
Confidence 555566666667778888888888777777665 5444444445 556666666653 22222211111
Q ss_pred ---cHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 146 ---YLKVYQRRARLYQQ-SDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 146 ---~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
....+...+..... .++.+.|...+.+++...|.+...+..+..+.
T Consensus 436 ~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 436 NGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred cchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 12334444444333 35677788888888888888887776666554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.5 Score=36.56 Aligned_cols=85 Identities=16% Similarity=0.087 Sum_probs=54.7
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH-HHHHHHHHHHhCCCcHHHHHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE-ALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~ 186 (229)
..-..-+.. ++..|+..++-..++.+.+..|+- ..+ +..++...|+... -.+-.++..++.|++.+....
T Consensus 264 Paav~AAra------lf~d~~~rKg~~ilE~aWK~ePHP-~ia--~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~ 334 (531)
T COG3898 264 PAAVVAARA------LFRDGNLRKGSKILETAWKAEPHP-DIA--LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLA 334 (531)
T ss_pred hHHHHHHHH------HHhccchhhhhhHHHHHHhcCCCh-HHH--HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 344445566 999999999999999999999853 321 1223334555322 234445566889999998887
Q ss_pred hccCchHHHhhhhhcc
Q psy13014 187 TKVSPDLKLKEKNGAT 202 (229)
Q Consensus 187 l~~~~~~~~~~~~~a~ 202 (229)
++... ...+++-.|.
T Consensus 335 va~aA-lda~e~~~AR 349 (531)
T COG3898 335 VAEAA-LDAGEFSAAR 349 (531)
T ss_pred HHHHH-HhccchHHHH
Confidence 77665 4444444443
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.042 Score=29.46 Aligned_cols=29 Identities=28% Similarity=0.611 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
.++..+|.+-...++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35677788888888888888888888765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.11 Score=27.54 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHH--HHHHHHhCCC
Q psy13014 148 KVYQRRARLYQQSDKLDEALAD--YQKILELDPN 179 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~--~~~al~~~p~ 179 (229)
+.++.+|..+...|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456666777777777777777 3356565554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=95.08 E-value=1.9 Score=36.88 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
....+.+...+|..+..-+.++.|...|..+.+....- +..+.+-.++|.. |...++-+.--+..+ .+.
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~--dl~a~~nlnlAi~------YL~~~~~ed~y~~ld---~i~ 431 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI--DLQAFCNLNLAIS------YLRIGDAEDLYKALD---LIG 431 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH--HHHHHHHHhHHHH------HHHhccHHHHHHHHH---hcC
Confidence 34677889999999999999999999999999985432 2235667788999 988776555333333 244
Q ss_pred CCc----------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 144 PSY----------LKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 144 p~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
|.+ ..+++..|...+.++++.||...+.+.++..
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 443 3457778888899999999999999999887
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.031 Score=47.66 Aligned_cols=96 Identities=20% Similarity=0.098 Sum_probs=81.3
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS---DKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKN 199 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 199 (229)
.+..+....|+.+|.+++...|.....+.+.+.++.+. |+.-.|+.....+++++|....+++.+++++ ..++...
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL-~el~r~~ 462 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL-NELTRYL 462 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH-HHHhhHH
Confidence 45566678999999999999999999999999998865 4667799999999999999999999999999 8899999
Q ss_pred hccccccccc-ccCCCccccc
Q psy13014 200 GATKLSPDVF-LHPGQPQIQH 219 (229)
Q Consensus 200 ~a~~~~~~~~-~~p~~~~~~~ 219 (229)
+|+.....+. ..|.++..+.
T Consensus 463 eal~~~~alq~~~Ptd~a~~~ 483 (758)
T KOG1310|consen 463 EALSCHWALQMSFPTDVARQN 483 (758)
T ss_pred HhhhhHHHHhhcCchhhhhhh
Confidence 9988887777 6665554443
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.13 Score=40.46 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=62.4
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
+...++++.|..+.++.+.++|.++.-+.-.|.+|.++|.+.-|++.+...++.-|+++.+-.....+
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999876554444
|
|
| >KOG2396|consensus | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.28 Score=41.80 Aligned_cols=80 Identities=8% Similarity=0.096 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCC-hHHHHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEK-PDQSILACSKAI 140 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~-~~~A~~~~~~al 140 (229)
...+.+...|......+.+.+.+.+--..|.+++...|++ +++|..-|.- .+..+. .+.|.+.+.+++
T Consensus 99 ~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~-----~dLWI~aA~w------efe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 99 NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNN-----PDLWIYAAKW------EFEINLNIESARALFLRGL 167 (568)
T ss_pred HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC-----chhHHhhhhh------HHhhccchHHHHHHHHHHh
Confidence 3445577888888888888888999999999999999999 9999998888 777665 899999999999
Q ss_pred hcCCCcHHHHHH
Q psy13014 141 TLNPSYLKVYQR 152 (229)
Q Consensus 141 ~~~p~~~~~~~~ 152 (229)
..+|+++..|..
T Consensus 168 R~npdsp~Lw~e 179 (568)
T KOG2396|consen 168 RFNPDSPKLWKE 179 (568)
T ss_pred hcCCCChHHHHH
Confidence 999999987654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.2 Score=39.91 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=82.9
Q ss_pred HHHccCHHHHHHHHHHHHHhCC-CC--CchhhHHHHHhHhhhhhhhHHhhccC-ChHHHHHHHHHHHhc----CC---Cc
Q psy13014 78 LFRLNQWSESLAKYNEALRSCP-RS--CSVSRAVFYANRSAALEKLASYLSLE-KPDQSILACSKAITL----NP---SY 146 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p-~~--~~~~~~~~~~~lg~~~~~~~~~~~~~-~~~~A~~~~~~al~~----~p---~~ 146 (229)
...+|+++.|..++.++-...+ .+ .....+..+++.|.. ....+ +++.|+.+++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~------l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~ 76 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS------LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLS 76 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH------HHHcCCChHHHHHHHHHHHHHHHhhhhccccC
Confidence 3578999999999999977652 22 123356677777777 88888 999999999999887 21 11
Q ss_pred -------HHHHHHHHHHHHhcccHH---HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 147 -------LKVYQRRARLYQQSDKLD---EALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 147 -------~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..++..++.++...+.++ +|...++.+-.-.|+.+..+...-.+. .+..+..+..+.+.+++
T Consensus 77 ~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il-~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 77 PDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEIL-LKSFDEEEYEEILMRMI 148 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH-hccCChhHHHHHHHHHH
Confidence 346777899998887654 566666666667788777663332233 22333444444444444
|
It is also involved in sporulation []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.5 Score=37.12 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQ--TAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
....+...|+++... +++.+|...|.+...... ..|. .-+.+-..-.-.+-.++.+.-......
T Consensus 5 ~~~llc~Qgf~Lqkq-~~~~esEkifskI~~e~~-------------~~~f~lkeEvl~grilnAffl~nld~Me~~l~~ 70 (549)
T PF07079_consen 5 RQYLLCFQGFILQKQ-KKFQESEKIFSKIYDEKE-------------SSPFLLKEEVLGGRILNAFFLNNLDLMEKQLME 70 (549)
T ss_pred HHHHHHHhhHHHHHH-hhhhHHHHHHHHHHHHhh-------------cchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 345567778999888 999999999987763221 1110 001222222223445666666666666
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----CCc---------HH--HHHHHHHHHH
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN----PSY---------LK--VYQRRARLYQ 158 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~---------~~--~~~~la~~~~ 158 (229)
.-+..|.. +.+....|.. .++.+.|.+|++.+..--+.- |.. +. .-.-.|.++.
T Consensus 71 l~~~~~~s-----~~l~LF~~L~------~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLI 139 (549)
T PF07079_consen 71 LRQQFGKS-----AYLPLFKALV------AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLI 139 (549)
T ss_pred HHHhcCCc-----hHHHHHHHHH------HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHH
Confidence 66777877 8888889999 999999999998876544331 111 11 1223588899
Q ss_pred hcccHHHHHHHHHHHHHh
Q psy13014 159 QSDKLDEALADYQKILEL 176 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~ 176 (229)
.+|++.++...+.+.+..
T Consensus 140 e~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 140 ETGRFSEGRAILNRIIER 157 (549)
T ss_pred hcCCcchHHHHHHHHHHH
Confidence 999999999999887744
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.062 Score=42.55 Aligned_cols=60 Identities=22% Similarity=0.037 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|+.+|.+|+.+.|.+...|+.+|.+....|+.=.|+-+|-+++......+.+..++..+.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf 60 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF 60 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999988777788999999887
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.62 Score=41.06 Aligned_cols=130 Identities=11% Similarity=-0.020 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHH-------hCCCCCchhhHHHHHhHhhhhhhhHHhhccC---
Q psy13014 63 KLEQTAISLKDEGNALFR-----LNQWSESLAKYNEALR-------SCPRSCSVSRAVFYANRSAALEKLASYLSLE--- 127 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~~~~al~-------~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--- 127 (229)
....+..+...+|.++.. .++.+.|+.++..+.. .. . +.+.+.+|.+ |.+..
T Consensus 239 a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~-----~~a~~~lg~~------Y~~g~~~~ 305 (552)
T KOG1550|consen 239 AKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--L-----PPAQYGLGRL------YLQGLGVE 305 (552)
T ss_pred HhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--C-----CccccHHHHH------HhcCCCCc
Confidence 334566667777777765 4789999999999977 22 2 5567788888 76643
Q ss_pred --ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCCcHHHHHHhccCchH---HHhhhh
Q psy13014 128 --KPDQSILACSKAITLNPSYLKVYQRRARLYQQSD---KLDEALADYQKILELDPNNRDAYVATKVSPDL---KLKEKN 199 (229)
Q Consensus 128 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~~~~~~ 199 (229)
+++.|+.+|.++-... ++.+.+.+|.++..-. ++..|.++|..|... .+..+.+.++.|+.. -..+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 7788999999998864 5667788899988766 678999999988765 467788888888741 112355
Q ss_pred hccccccccc
Q psy13014 200 GATKLSPDVF 209 (229)
Q Consensus 200 ~a~~~~~~~~ 209 (229)
.|...+.++.
T Consensus 382 ~A~~~~k~aA 391 (552)
T KOG1550|consen 382 LAFAYYKKAA 391 (552)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.23 Score=32.53 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=44.8
Q ss_pred hhccCChHHHHHHHHHHHhcC----CC-----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy13014 123 YLSLEKPDQSILACSKAITLN----PS-----YLKVYQRRARLYQQSDKLDEALADYQKILELDP 178 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~----p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 178 (229)
....|+|..|++.+.+..... .. ...++.++|.++...|++++|+..+++++++-.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 457899999988777776543 21 145788899999999999999999999998754
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.6 Score=37.80 Aligned_cols=86 Identities=9% Similarity=0.097 Sum_probs=63.6
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCcH-HHHHHhccCchHHHhhhh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL--DPNNR-DAYVATKVSPDLKLKEKN 199 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~-~~~~~l~~~~~~~~~~~~ 199 (229)
|.-.++..-|...|+-.++..++.+..-.....-+..+++-..|...|++++.. .|+.. +.|..+-.-. .+.|++.
T Consensus 411 y~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE-S~vGdL~ 489 (656)
T KOG1914|consen 411 YYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE-SNVGDLN 489 (656)
T ss_pred HHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH-HhcccHH
Confidence 667889999999999999999999998888888899999999999999999887 44322 3444333222 5566666
Q ss_pred hccccccccc
Q psy13014 200 GATKLSPDVF 209 (229)
Q Consensus 200 ~a~~~~~~~~ 209 (229)
..++.-.+..
T Consensus 490 si~~lekR~~ 499 (656)
T KOG1914|consen 490 SILKLEKRRF 499 (656)
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
|
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.14 Score=45.63 Aligned_cols=115 Identities=29% Similarity=0.462 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..+......|+.+++.+++..|...|..++.+-|.+ ....+....+.+.|++ ...++++..++..++-++...|.
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~-~~~~a~~~~~~~s~~m----~~~l~~~~~~~~E~~la~~~~p~ 125 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD-HHVVATLRSNQASCYM----QLGLGEYPKAIPECELALESQPR 125 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc-chhhhhHHHHHHHHHh----hcCccchhhhcCchhhhhhccch
Confidence 344456678899999999999999999999998843 2334666777777722 34567999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
...++...+.+|..+++++-|++.+.-....+|.+..+.-
T Consensus 126 i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 126 ISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 9999999999999999999999998888899999865543
|
|
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=94.52 E-value=3 Score=36.45 Aligned_cols=166 Identities=15% Similarity=0.113 Sum_probs=108.5
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh--------hhhHHHHHHHHHHH
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFC--------SQKLEQTAISLKDE 74 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 74 (229)
|.-..-.|.-.|-+...+..++.+.... |+.+.+.+..++++..++...+....+.. .........+++..
T Consensus 270 ~n~v~~lL~ssPYHvdsLLqva~~~r~q-gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~ 348 (665)
T KOG2422|consen 270 PNNVLILLISSPYHVDSLLQVADIFRFQ-GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRY 348 (665)
T ss_pred CcceeeeeccCCcchhHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHH
Confidence 3334445667799999999999999988 99999999999999887766654442211 11223333455556
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH-----HhcCCCcHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA-----ITLNPSYLK 148 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a-----l~~~p~~~~ 148 (229)
-..+.+.|.+.-|.+...-.++++|. + +.....+-..+ .++.++|+=-|..++.. +..-|+.+.
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eD-----Pl~~l~~ID~~-----ALrareYqwiI~~~~~~e~~n~l~~~PN~~y 418 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSED-----PLGILYLIDIY-----ALRAREYQWIIELSNEPENMNKLSQLPNFGY 418 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCC-----chhHHHHHHHH-----HHHHHhHHHHHHHHHHHHhhccHhhcCCchH
Confidence 66677899999999999999999998 4 44433333330 34556666666666554 333354322
Q ss_pred HHHHHHHHHHhccc---HHHHHHHHHHHHHhCCCc
Q psy13014 149 VYQRRARLYQQSDK---LDEALADYQKILELDPNN 180 (229)
Q Consensus 149 ~~~~la~~~~~~~~---~~~A~~~~~~al~~~p~~ 180 (229)
-..+|..|..... -+.|...+.+|+...|..
T Consensus 419 -S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~v 452 (665)
T KOG2422|consen 419 -SLALARFFLRKNEEDDRQSALNALLQALKHHPLV 452 (665)
T ss_pred -HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHH
Confidence 2223444443333 567888999999988843
|
|
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.4 Score=38.96 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.....+.....++.||....+.++|++++++|-+.+|.+ +-.-..+-.+ ....+..++|+....+....
T Consensus 389 ~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~-----~l~q~~~~~~------~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 389 YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS-----PLCQLLMLQS------FLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc-----HHHHHHHHHH------HHHhcchHHHHHHHHHHHhh
Confidence 444557788899999999999999999999999999998 7776667677 77889999999888766544
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.06 Score=43.06 Aligned_cols=82 Identities=10% Similarity=0.139 Sum_probs=70.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhH-hhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANR-SAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~l-g~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
....+.++..|...+......+.|.+--..|.++++..|.+ .++|..- +.- +...++.+.+...+.++
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~n-----vdlWI~~c~~e------~~~~ani~s~Ra~f~~g 168 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLN-----VDLWIYCCAFE------LFEIANIESSRAMFLKG 168 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----ceeeeeeccch------hhhhccHHHHHHHHHhh
Confidence 34556788889888888888999999999999999999999 8888874 444 77889999999999999
Q ss_pred HhcCCCcHHHHHHH
Q psy13014 140 ITLNPSYLKVYQRR 153 (229)
Q Consensus 140 l~~~p~~~~~~~~l 153 (229)
+..+|.++..|+..
T Consensus 169 lR~N~~~p~iw~ey 182 (435)
T COG5191 169 LRMNSRSPRIWIEY 182 (435)
T ss_pred hccCCCCchHHHHH
Confidence 99999999877654
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.21 Score=26.38 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHHHhCCC
Q psy13014 69 ISLKDEGNALFRLNQWSESLAK--YNEALRSCPR 100 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~ 100 (229)
+.++.+|..+.++|++++|+.. |.-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4678899999999999999999 4488777765
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.19 Score=39.72 Aligned_cols=62 Identities=10% Similarity=0.167 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 159 (229)
|..+|.+|+.+.|.+ ...|+.+|.+ ....|+.-.|+-+|-+++-.....+.+.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~-----G~p~nQLAvl------~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN-----GNPYNQLAVL------ASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB-----SHHHHHHHHH------HHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC-----CCcccchhhh------hccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678999999999999 9999999999 9999999999999999998776668888888888877
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.62 Score=29.33 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
......|.-++..++..+|+..+.++++..++. ..+..+.-.+..+ |...|+|.+.+++.-.=+.
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~--~~rf~~lG~l~qA------~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDR--EDRFRVLGYLIQA------HMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh--HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence 345567888889999999999999999998876 1234444555566 7888999988887655443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.18 Score=42.85 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|..+......+.+....|.|+.+...+.-+-..-... .....-+-.. .+.+++++.|.....-.+.
T Consensus 317 r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-----~~~~~~~~r~------~~~l~r~~~a~s~a~~~l~ 385 (831)
T PRK15180 317 RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-----DSTLRCRLRS------LHGLARWREALSTAEMMLS 385 (831)
T ss_pred HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-----chHHHHHHHh------hhchhhHHHHHHHHHHHhc
Confidence 4556666667778888999999999998876655543332 2223333344 7788999999998888887
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
..-.+++...--|.....+|-+++|...+++.+.++|.....|.+.
T Consensus 386 ~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 386 NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred cccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 7777777777677777888899999999999999988766555443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.43 Score=34.07 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=64.4
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
-...++.+.+...++..--+.|+.+..-..-|.++...|++.+|+..++...+-.+..+.....++.|+ .-+++
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL-~al~D 93 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL-NAKGD 93 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH-HhcCC
Confidence 455889999999999888899999999999999999999999999999999999988888887788776 44443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.8 Score=31.46 Aligned_cols=88 Identities=13% Similarity=-0.001 Sum_probs=58.6
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
+|-..+...+--+...+..++-.+..+ |+++++....++++.......... .......+.+.+..|..+...|+
T Consensus 42 iP~eEaFDh~GFDA~chA~Ls~A~~~L-gry~e~L~sA~~aL~YFNRRGEL~-----qdeGklWIaaVfsra~Al~~~Gr 115 (144)
T PF12968_consen 42 IPAEEAFDHDGFDAFCHAGLSGALAGL-GRYDECLQSADRALRYFNRRGELH-----QDEGKLWIAAVFSRAVALEGLGR 115 (144)
T ss_dssp S-TTS---HHHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHH--TT-----STHHHHHHHHHHHHHHHHHHTT-
T ss_pred CChHhhcccccHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHhhccccc-----cccchhHHHHHHHHHHHHHhcCC
Confidence 344555555555677788888889999 999999887776664443332222 12233556678899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy13014 84 WSESLAKYNEALRS 97 (229)
Q Consensus 84 ~~~A~~~~~~al~~ 97 (229)
.++|+..|+.+.++
T Consensus 116 ~~eA~~~fr~agEM 129 (144)
T PF12968_consen 116 KEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998765
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.13 Score=27.60 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.++..+|.+....++|++|+.-|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.46 Score=41.24 Aligned_cols=120 Identities=17% Similarity=0.050 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHh--HhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYAN--RSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~--lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
.-++..+...+.++|.+ +.++.. +... +...+....+......++..+|++..++.++|.+....|.
T Consensus 48 ~~~~~a~~~~~~~~~~~-----~~llla~~lsi~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~ 116 (620)
T COG3914 48 ALAIYALLLGIAINDVN-----PELLLAAFLSIL------LAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGL 116 (620)
T ss_pred hHHHHHHHccCccCCCC-----HHHHHHHHHHhh------ccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh
Confidence 33666666677777776 444222 5777 7888999899999999999999999999999999998888
Q ss_pred HHHHHHHHHH-HHHhCCCcHHHHHHhccCch-----HHHhhhhhccccccccc-ccCCCc
Q psy13014 163 LDEALADYQK-ILELDPNNRDAYVATKVSPD-----LKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 163 ~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~-----~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
.-.+...+.. +....|.+......+-.++. .-++.-.++.....++. +.|++.
T Consensus 117 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 117 QFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhh
Confidence 7777766666 89999999988887755541 22333333444444444 555543
|
|
| >KOG0529|consensus | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.62 Score=38.74 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=82.7
Q ss_pred HccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 80 RLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE--KPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+....+.-+.+...+++.+|++ ..+|+.+..+ +.+.+ ++..-++.++++++.+|.+-.+|...=.+.
T Consensus 87 k~~~ld~eL~~~~~~L~~npks-----Y~aW~hR~w~------L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~ 155 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKS-----YGAWHHRKWV------LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVV 155 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchh-----HHHHHHHHHH------HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHH
Confidence 3345777888899999999999 9999999999 66554 467889999999999999988777665555
Q ss_pred Hhccc----HHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 158 QQSDK----LDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 158 ~~~~~----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
..... ..+-++..++++..++++-.+|.....+..
T Consensus 156 ~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 156 EQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 44433 466788888999999999999998887774
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.098 Score=25.28 Aligned_cols=23 Identities=22% Similarity=0.021 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566666666666666666553
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.64 Score=37.00 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=56.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
..++..++.. +...++++.++..+++.+..+|-+...|..+-.+|...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~------~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEA------LIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHH------HHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4445555666 888999999999999999999999999999999999999999999999988764
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=93.28 E-value=1.5 Score=39.28 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.+...-.++.++|..+..+..|++|.++|.+.-. .-+...| ++.+.+|++ ++.....
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------------~e~~~ec------ly~le~f~~----LE~la~~ 847 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------------TENQIEC------LYRLELFGE----LEVLART 847 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------hHhHHHH------HHHHHhhhh----HHHHHHh
Confidence 3455667899999999999999999999865422 2234455 556555555 3333333
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
-|++...+-.+|.++...|--++|++.|
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 4555555555666666666656555554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=93.16 E-value=1 Score=37.37 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=68.3
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--------------C------------CCc-
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--------------N------------PSY- 146 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--------------~------------p~~- 146 (229)
.++.+|-+ .+.+..++.+ +..+|+...|.+.+++|+-. + +.|
T Consensus 32 ll~~~PyH-----idtLlqls~v------~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR 100 (360)
T PF04910_consen 32 LLQKNPYH-----IDTLLQLSEV------YRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENR 100 (360)
T ss_pred HHHHCCCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccch
Confidence 36778988 9999999999 99999999999998888621 1 111
Q ss_pred --HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-cHHHHHHhccC
Q psy13014 147 --LKVYQRRARLYQQSDKLDEALADYQKILELDPN-NRDAYVATKVS 190 (229)
Q Consensus 147 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 190 (229)
-.++++....+.+.|-+.-|.++.+-.+++||. |+-.....-..
T Consensus 101 ~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~ 147 (360)
T PF04910_consen 101 QFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDY 147 (360)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 236777888899999999999999999999999 77654443333
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG1258|consensus | Back alignment and domain information |
|---|
Probab=93.14 E-value=2.6 Score=36.83 Aligned_cols=130 Identities=12% Similarity=0.043 Sum_probs=101.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
....+.....|......-...|+++...-.|++++--.... ...|...+.- ....|+.+-|-..+..+.
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y-----~efWiky~~~------m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALY-----DEFWIKYARW------MESSGDVSLANNVLARAC 358 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhh-----HHHHHHHHHH------HHHcCchhHHHHHHHhhh
Confidence 34455666778888888889999999999999999888777 8889998888 777788888888888777
Q ss_pred hcC-CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc
Q psy13014 141 TLN-PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 141 ~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
++. |..+..+..-+..-...|++..|...+++..+--|+...+-.....+. .+.++.+.+.
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e-~r~~~~~~~~ 420 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWE-RRKGNLEDAN 420 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHH-HHhcchhhhh
Confidence 765 666777777888888899999999999999888888877665555554 4444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.88 E-value=1 Score=35.87 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.....++..++..+...++++.++..+++.+..+|.+ -..|..+-.. |...|+...|+..|++.-+.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~-----E~~~~~lm~~------y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYD-----EPAYLRLMEA------YLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc-----hHHHHHHHHH------HHHcCCchHHHHHHHHHHHH
Confidence 3456788889999999999999999999999999998 8889999899 99999999999999887653
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.86 E-value=3.9 Score=37.52 Aligned_cols=132 Identities=11% Similarity=0.023 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
|......++..... .++.++.....+....++. .+........+...-..|.+....+++++|....+.++.
T Consensus 415 P~Lvll~aW~~~s~-~r~~ea~~li~~l~~~l~~-------~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~ 486 (894)
T COG2909 415 PRLVLLQAWLLASQ-HRLAEAETLIARLEHFLKA-------PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV 486 (894)
T ss_pred chHHHHHHHHHHHc-cChHHHHHHHHHHHHHhCc-------CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44445556666666 6777776666554432221 011112234445566678889999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----CCc--HHHHHHHHHHHHhccc
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN----PSY--LKVYQRRARLYQQSDK 162 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~--~~~~~~la~~~~~~~~ 162 (229)
.-|......+..+...+|.+ ..-.|++++|..+...+.+.. .-. ..+.+..+.++...|+
T Consensus 487 ~L~~~~~~~r~~~~sv~~~a------~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 487 QLPEAAYRSRIVALSVLGEA------AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hcccccchhhhhhhhhhhHH------HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 98887666678889999999 999999999999988887762 222 3345556778888883
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=92.83 E-value=2 Score=40.17 Aligned_cols=113 Identities=8% Similarity=0.059 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-chhhHHHHHhHhhh--------------hhhhHH-hhccCCh
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC-SVSRAVFYANRSAA--------------LEKLAS-YLSLEKP 129 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~lg~~--------------~~~~~~-~~~~~~~ 129 (229)
+++..+...-....+.|.|++-+.++..+-+...... +.....++...+.+ ....|. .+..+.|
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhh
Confidence 4555666677777778888888887777765533221 11111111111111 111121 5566677
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 130 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+.|.-.|.. ..-|-.+|..+..+|+|+.|+..-++|- +...|...+..|
T Consensus 1211 ~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1211 EAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKAN-----STKTWKEVCFAC 1259 (1666)
T ss_pred HHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHH
Confidence 777666653 4457789999999999999999988773 344555554444
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.5 Score=27.70 Aligned_cols=53 Identities=17% Similarity=0.072 Sum_probs=41.8
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHH---HHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQ---RRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
++..++.++|+..+.++++..++.+.-+. .+..+|...|+|.+++.+.-.=+.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999887766444 456678899999998877554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.70 E-value=1 Score=37.80 Aligned_cols=105 Identities=9% Similarity=-0.032 Sum_probs=72.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCS--QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (229)
|...+.. ++|..|+.-|..+++........-..+... ....-...+--.+..||..+++.+-|+.+..+.|.++|.+
T Consensus 183 as~~yrq-k~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 183 ASSCYRQ-KKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHhh-HHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 4445566 777777777766654332111111101111 1122233456678899999999999999999999999998
Q ss_pred CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 102 CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 102 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
..-+...|.| +..+.+|.+|...+--+.
T Consensus 262 -----frnHLrqAav------fR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 262 -----FRNHLRQAAV------FRRLERYSEAARSAMIAD 289 (569)
T ss_pred -----hhHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 8889999999 999999999987766554
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.5 Score=41.62 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS---CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
..+..+..+..++..+...+++++|+..-.++.-+.... ........+.+++.. .+..++...|...+.++
T Consensus 968 ~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~------~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 968 LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALY------EFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHH------HHhccCccchhhhHHHH
Confidence 557888999999999999999999999988887664321 112247788899988 88889999999999888
Q ss_pred Hhc--------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 140 ITL--------NPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 140 l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
..+ .|.-.....+++.++...++++.|+.+.+.|++.+
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 765 35555667889999999999999999999999864
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=92.18 E-value=3.7 Score=32.13 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
..........+|..|+..|++++|+.+|+.+...... ........+...+..| ...+|+.+..+...-+.+
T Consensus 174 ~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~C------a~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 174 NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLEC------AKRLGDVEDYLTTSLELL 245 (247)
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH------HHHhCCHHHHHHHHHHHh
Confidence 4445556678888888888888888888888665432 2222335556666777 778888777777665544
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.6 Score=41.46 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=109.0
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
.+.|+....+..++.++... ++.++|+..-.++..... .......++....+-+++...+..++...|...
T Consensus 967 ~~h~~~~~~~~~La~l~~~~-~d~~~Ai~~~~ka~ii~e--------R~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~ 1037 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRL-GDNQEAIAQQRKACIISE--------RVLGKDSPNTKLAYGNLALYEFAVKNLSGALKS 1037 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhh-cchHHHHHhcccceeeec--------hhccCCCHHHHHHhhHHHHHHHhccCccchhhh
Confidence 35667777788888888888 888888887665542111 011245678888999999999999999999999
Q ss_pred HHHHHHhCCCCCc---hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-----CC---cHHHHHHHHHHHHh
Q psy13014 91 YNEALRSCPRSCS---VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-----PS---YLKVYQRRARLYQQ 159 (229)
Q Consensus 91 ~~~al~~~p~~~~---~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~---~~~~~~~la~~~~~ 159 (229)
+.++..+.--... .....+..+++.+ +...++++.|+.+.+.|+..+ |. ....+..++.....
T Consensus 1038 ~~ra~~l~~Ls~ge~hP~~a~~~~nle~l------~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s 1111 (1236)
T KOG1839|consen 1038 LNRALKLKLLSSGEDHPPTALSFINLELL------LLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFES 1111 (1236)
T ss_pred HHHHHHhhccccCCCCCchhhhhhHHHHH------HhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhh
Confidence 9888776311110 1126667888988 889999999999999998864 22 23456677888888
Q ss_pred cccHHHHHHHHHHHHHh
Q psy13014 160 SDKLDEALADYQKILEL 176 (229)
Q Consensus 160 ~~~~~~A~~~~~~al~~ 176 (229)
++++..|+...+....+
T Consensus 1112 ~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1112 MKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hHHHHHHHHHHhhHHHH
Confidence 88888877777666544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.10 E-value=2.6 Score=31.77 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC----cHHHHHHHHHHHH
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS----YLKVYQRRARLYQ 158 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~ 158 (229)
.-++|...|-++-.. |.-. .+.+.+.+|.. | ...+.++|+..+.+++++.+. +++.+..++.++.
T Consensus 121 ~d~~A~~~fL~~E~~-~~l~---t~elq~aLAty------Y-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 121 GDQEALRRFLQLEGT-PELE---TAELQYALATY------Y-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ 189 (203)
T ss_pred CcHHHHHHHHHHcCC-CCCC---CHHHHHHHHHH------H-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 345566665444332 2111 27777777765 5 467888888888888887533 4778888888888
Q ss_pred hcccHHHHHH
Q psy13014 159 QSDKLDEALA 168 (229)
Q Consensus 159 ~~~~~~~A~~ 168 (229)
..|+++.|--
T Consensus 190 ~~~~~e~AYi 199 (203)
T PF11207_consen 190 KLKNYEQAYI 199 (203)
T ss_pred Hhcchhhhhh
Confidence 8888888753
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.25 Score=23.81 Aligned_cols=24 Identities=13% Similarity=-0.072 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467889999999999999998875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.38 E-value=4.2 Score=30.10 Aligned_cols=99 Identities=9% Similarity=0.027 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH-hcCCCcHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI-TLNPSYLK 148 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~ 148 (229)
+....|.+..+.|+...|+..|..+-...|.. -..+..+...-+.+ +...|.|+.-..-.+..- ..+|-...
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~ARlraa~l------LvD~gsy~dV~srvepLa~d~n~mR~s 168 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLARLRAAYL------LVDNGSYDDVSSRVEPLAGDGNPMRHS 168 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHHHHHHHH------HhccccHHHHHHHhhhccCCCChhHHH
Confidence 44444555555555555555555544433321 00111222222333 444455554333332211 11222233
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
+---+|.+-.+.|++.+|.++|.....
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344455555666666666666655554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.35 E-value=10 Score=33.93 Aligned_cols=142 Identities=11% Similarity=0.002 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
..+++.+|.+++....+++.|..++++++..... ..-..-....-+.++.++.+.+... |....++.++
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~----------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~ 127 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCER----------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE 127 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence 4578888999887668999999999988743321 0111223344556688888888887 9999999999
Q ss_pred hCCCCCchhhHHHHHhH-hhhhhhhHHhhccCChHHHHHHHHHHHhcC--CCcHHH----HHHHHHHHHhcccHHHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANR-SAALEKLASYLSLEKPDQSILACSKAITLN--PSYLKV----YQRRARLYQQSDKLDEALAD 169 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~l-g~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~~~~~~A~~~ 169 (229)
............++..+ ... ....+++..|++.++...... +.++.+ ....+.++...+..+++++.
T Consensus 128 ~~~~~~~~~w~~~frll~~~l------~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~ 201 (608)
T PF10345_consen 128 DSETYGHSAWYYAFRLLKIQL------ALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLEL 201 (608)
T ss_pred HHhccCchhHHHHHHHHHHHH------HHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence 86653111112222222 222 333479999999999988765 344432 33346777777878888888
Q ss_pred HHHHHH
Q psy13014 170 YQKILE 175 (229)
Q Consensus 170 ~~~al~ 175 (229)
+.++..
T Consensus 202 l~~~~~ 207 (608)
T PF10345_consen 202 LQRAIA 207 (608)
T ss_pred HHHHHH
Confidence 887743
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0546|consensus | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.15 Score=41.47 Aligned_cols=126 Identities=14% Similarity=0.063 Sum_probs=88.4
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc
Q psy13014 27 LFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFC---SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS 103 (229)
Q Consensus 27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~ 103 (229)
.+.. +++..|...+.+.............+... ............+.+.+-+..+.+..|+..-..++..++..
T Consensus 232 ~~kk-~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~-- 308 (372)
T KOG0546|consen 232 EFKK-QRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK-- 308 (372)
T ss_pred hhhh-ccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh--
Confidence 4555 77888887777666544321111111110 01112233455668888889999999998888888877777
Q ss_pred hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 104 VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 104 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
..+++.++.. +..+.++++|++++..+....|++....-.+..+-....++.
T Consensus 309 ---tka~~Rr~~~------~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~ 360 (372)
T KOG0546|consen 309 ---TKAHYRRGQA------YKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYN 360 (372)
T ss_pred ---CcHHHHHHhH------HHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHH
Confidence 8889999999 999999999999999999999999887666665555554443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.66 E-value=14 Score=34.19 Aligned_cols=157 Identities=12% Similarity=-0.033 Sum_probs=108.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHH------HHHHHHHH----------HHHHhhhhh--hhHHHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQ------VFYIQFIF----------HVLFYLFCS--QKLEQTAISLKDEG 75 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~~~~~----------~~~~~~~~~--~~~~~~~~~~~~~g 75 (229)
|+-...+..-+..+... |...+|+++.-.+ ...+.... .+..+.+.. ....+++......+
T Consensus 344 ~~~~~lH~~Aa~w~~~~-g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~a 422 (894)
T COG2909 344 ARLKELHRAAAEWFAEH-GLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQA 422 (894)
T ss_pred CchhHHHHHHHHHHHhC-CChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHH
Confidence 44466777777777777 8888777755221 11111110 011111211 12236677788889
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCc----hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-----
Q psy13014 76 NALFRLNQWSESLAKYNEALRSCPRSCS----VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY----- 146 (229)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----- 146 (229)
.......++.+|..+..++-..-+.... +..+..-...|.+ ....|+.++|++..+.++..-|.+
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~v------al~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQV------ALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 9999999999999999888776443211 1234555566777 888999999999999999987765
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
..++...|.+..-.|++++|..+...+.+..
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 3467788999999999999999999998873
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=90.58 E-value=2.4 Score=36.78 Aligned_cols=138 Identities=9% Similarity=0.022 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
+..|.+...|+.+-..+-.+ .+++..+.|++.+...|.. +.+|..-... .+..++|+.-...|.+++.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s-----~r~W~~yi~~------El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSS-----PRAWKLYIER------ELASKDFESVEKLFSRCLV 81 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCC-----cHHHHHHHHH------HHHhhhHHHHHHHHHHHHH
Confidence 57889999999888777666 9999999999999999999 8888888888 8889999999999999886
Q ss_pred cCCCcHHHHHH-HHHHHHhcccHHHHH----HHHHHHH---HhCCCcHHHHHHhccCch--------HHHhhhhhccccc
Q psy13014 142 LNPSYLKVYQR-RARLYQQSDKLDEAL----ADYQKIL---ELDPNNRDAYVATKVSPD--------LKLKEKNGATKLS 205 (229)
Q Consensus 142 ~~p~~~~~~~~-la~~~~~~~~~~~A~----~~~~~al---~~~p~~~~~~~~l~~~~~--------~~~~~~~~a~~~~ 205 (229)
.--+ .+.|.. +..+-...++...+. +.|+-++ -.++.....|......++ +..++...-.+-|
T Consensus 82 kvLn-lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriY 160 (656)
T KOG1914|consen 82 KVLN-LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIY 160 (656)
T ss_pred HHhh-HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHH
Confidence 5332 333332 344444444433322 2333332 235555556665554432 2333455556667
Q ss_pred ccccccC
Q psy13014 206 PDVFLHP 212 (229)
Q Consensus 206 ~~~~~~p 212 (229)
.+++.-|
T Consensus 161 qral~tP 167 (656)
T KOG1914|consen 161 QRALVTP 167 (656)
T ss_pred HHHhcCc
Confidence 7777666
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=90.53 E-value=11 Score=32.80 Aligned_cols=37 Identities=11% Similarity=-0.039 Sum_probs=28.3
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVF 46 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 46 (229)
..+..|+++...+..+..+... |+.+.|...++..+.
T Consensus 259 ~~~~~p~ga~wll~~ar~l~~~-g~~eaa~~~~~~~v~ 295 (546)
T KOG3783|consen 259 YRKRYPKGALWLLMEARILSIK-GNSEAAIDMESLSIP 295 (546)
T ss_pred HHHhCCCCccHHHHHHHHHHHc-ccHHHHHHHHHhccc
Confidence 3456788888888888888888 887777777766554
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=90.24 E-value=0.68 Score=38.88 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=42.9
Q ss_pred hhccCChHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLN---------PSYLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
+.-+|+|..|++.++. ++++ +-+..++|..|-+|..+++|.+|+..|..++.
T Consensus 132 h~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 132 HCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999998864 3333 33466899999999999999999999998873
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.78 E-value=0.89 Score=25.20 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=18.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
+.+|.+|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567777777777777777777774
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.7 Score=36.56 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH-------HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEA-------LRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~a-------l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.+..+..++.-.|+|..|++..+.. +...|.. ....++..|.+ |+.+++|..|+..|...+..
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~----~is~~YyvGFa------ylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPAC----HISTYYYVGFA------YLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcch----heehHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 4456667888899999999987543 1111221 26789999999 99999999999999987643
Q ss_pred CCCcHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCC--cHHHHHHhccCchHHHhhhhh-ccccccccc
Q psy13014 143 NPSYLKVYQRRARLYQ-QSDKLDEALADYQKILELDPN--NRDAYVATKVSPDLKLKEKNG-ATKLSPDVF 209 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~-a~~~~~~~~ 209 (229)
-...-..+.....-+- -.+..++....+--++.+.|. +..+...+..-+.+++.++.. .+..|...+
T Consensus 194 i~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF 264 (404)
T PF10255_consen 194 IQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELF 264 (404)
T ss_pred HHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 1111001111111111 124456666666667777775 344444444334344433222 344444444
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=89.76 E-value=6.9 Score=29.27 Aligned_cols=142 Identities=12% Similarity=-0.020 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-----ccCHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR-----LNQWSESLAK 90 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~A~~~ 90 (229)
.|++-..+|..+--...+++.|...|.+-- ..-..+...+.+|..++. .++...|++.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nC-----------------den~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~ 95 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNC-----------------DENSYPKSCYKYGMYMLAGKGGDDASLSKAIRP 95 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cccCCcHHHHHhhhhhhcccCCCccCHHHHHHH
Confidence 455666666655554466777777665443 233455566777776654 5678999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc-----C--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc---
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL-----E--KPDQSILACSKAITLNPSYLKVYQRRARLYQQS--- 160 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 160 (229)
|..+...+ . +.+..++|.+ +..- + +.++|.+++.++..++ +..+.+++...+...
T Consensus 96 ~~~aC~~n--~-----~~aC~~~gLl------~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k 160 (248)
T KOG4014|consen 96 MKIACDAN--I-----PQACRYLGLL------HWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEK 160 (248)
T ss_pred HHHHhccC--C-----HHHHhhhhhh------hccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchh
Confidence 99998853 3 7777778877 5432 2 3779999999987764 455555555555433
Q ss_pred ---------------------ccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 161 ---------------------DKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 161 ---------------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
++.++|.+.--+|-+++ ++.+-.++.+++
T Consensus 161 ~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMy 210 (248)
T KOG4014|consen 161 FKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMY 210 (248)
T ss_pred hcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHH
Confidence 56677777777776664 344444555554
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=89.69 E-value=9.8 Score=31.25 Aligned_cols=145 Identities=14% Similarity=-0.003 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCchh-hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC-PRSCSVS-RAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
...............+|+..++..+|...+..|-... .-++.+- .+.+=..-|.. +....+|.-|-.+|=+|
T Consensus 162 DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIl------ha~ekDykTafSYFyEA 235 (411)
T KOG1463|consen 162 DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGIL------HAAEKDYKTAFSYFYEA 235 (411)
T ss_pred ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccce------eecccccchHHHHHHHH
Confidence 3445556677778888888999999988887775542 2222211 23333334666 77779999999999999
Q ss_pred HhcCC---CcHHH---HHHHHHHHHhcccHHH--HHHHHHHHHHhCCCcHHHHHHhccCch-HHHhhhhhccccccccc-
Q psy13014 140 ITLNP---SYLKV---YQRRARLYQQSDKLDE--ALADYQKILELDPNNRDAYVATKVSPD-LKLKEKNGATKLSPDVF- 209 (229)
Q Consensus 140 l~~~p---~~~~~---~~~la~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~a~~~~~~~~- 209 (229)
++-.. ++..+ +-.+-.|-..++..++ ++-.-+.+++.+..+.++...++.... +.++++..|+.+|..-+
T Consensus 236 fEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 236 FEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred HccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 87532 22333 3333344444555554 555556677888888888888888764 66788999999998887
Q ss_pred ccC
Q psy13014 210 LHP 212 (229)
Q Consensus 210 ~~p 212 (229)
.||
T Consensus 316 ~D~ 318 (411)
T KOG1463|consen 316 EDP 318 (411)
T ss_pred cCh
Confidence 666
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.56 E-value=6.9 Score=29.02 Aligned_cols=128 Identities=12% Similarity=0.027 Sum_probs=95.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc----HH
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY----LK 148 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~ 148 (229)
.-+.-+.+.+..++|+..|...-+..-.+.. ..+.+..|.+ ....|+...|+..|+++-.-.|-. ..
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lektg~g~Yp---vLA~mr~at~------~a~kgdta~AV~aFdeia~dt~~P~~~rd~ 133 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKTGYGSYP---VLARMRAATL------LAQKGDTAAAVAAFDEIAADTSIPQIGRDL 133 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhcCCCcch---HHHHHHHHHH------HhhcccHHHHHHHHHHHhccCCCcchhhHH
Confidence 3445556789999999999888777654432 5667888999 999999999999999887765432 23
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHH-HHhCCCcHHHHHHhccCchHHHhhhhhcccccccccc
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKI-LELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVFL 210 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~ 210 (229)
+..+-+.++...|.|++-..-.+-. -.-+|--..+.-.|+... .+.+++.+|.+.|..+.-
T Consensus 134 ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa-~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 134 ARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA-YKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH-HhccchHHHHHHHHHHHc
Confidence 4566688899999999987776653 234555566777888776 788899999888876653
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.6 Score=34.96 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=41.7
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.+++.|++.
T Consensus 289 yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 777888888888888888888888888888888888888877777776654
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=89.41 E-value=1.2 Score=21.92 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=14.4
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 128 KPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 128 ~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
+.+.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 345555555555555555555555444
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.24 E-value=1.7 Score=34.74 Aligned_cols=60 Identities=17% Similarity=0.041 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
..+...+..|...|.+.+|+...++++.++|-+ ...+..+-.+ +..+|+--.|+.+|++.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~-----e~~nk~lm~~------la~~gD~is~~khyery 339 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLS-----EQDNKGLMAS------LATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhh-----hHHHHHHHHH------HHHhccchhhhhHHHHH
Confidence 345566778899999999999999999999998 8888888888 88999988888887764
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.5 Score=33.03 Aligned_cols=60 Identities=12% Similarity=0.002 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHH
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~ 133 (229)
+++...+.+|..|. ..+.++|+..+.+++++.+.+ +...++++..|+.+ +.++|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~------~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD-DNFNPEILKSLASI------YQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHH------HHHhcchhhhh
Confidence 56777788886665 889999999999999996543 11238999999999 99999999874
|
|
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=88.91 E-value=13 Score=31.30 Aligned_cols=115 Identities=15% Similarity=0.053 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC----
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN---- 143 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~---- 143 (229)
-.++..+|.-|...|+.+.|+++|.++-...... ......+.++-.+ -..+|+|..-..+..+|..--
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--khvInm~ln~i~V------SI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--KHVINMCLNLILV------SIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--HHHHHHHHHHHHH------HHhhcchhhhhhHHHHHHhCchhhh
Confidence 4678899999999999999999999954433322 2235667777777 777899888877777776541
Q ss_pred ----CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHH--------hCCCcHHHHHHhccC
Q psy13014 144 ----PSYLKVYQRRARLYQQSDKLDEALADYQKILE--------LDPNNRDAYVATKVS 190 (229)
Q Consensus 144 ----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~ 190 (229)
.-.+.....-|.+...+++|..|..+|-.+.. +.|.+..++..+..+
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcAL 280 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCAL 280 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhh
Confidence 11233556667888888899999999876642 246666666655544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.55 E-value=18 Score=32.46 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALF-RLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
.....+.+.+.+|.+++ ...+++.|..++++++.+...+.- +....+.+.++.+ +.+.+... |...++++|
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i------~~~~~~~~-a~~~l~~~I 126 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARI------YFKTNPKA-ALKNLDKAI 126 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH------HHhcCHHH-HHHHHHHHH
Confidence 44578889999999998 689999999999999998754322 2245556667778 77777766 999999998
Q ss_pred hcCCC----cHHHHHHHH--HHHHhcccHHHHHHHHHHHHHhC--CCcHHHHH
Q psy13014 141 TLNPS----YLKVYQRRA--RLYQQSDKLDEALADYQKILELD--PNNRDAYV 185 (229)
Q Consensus 141 ~~~p~----~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 185 (229)
+.-.+ .....+++- ......+++..|++.++.+.... +.++.+..
T Consensus 127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 87544 233333332 22323379999999999998876 45665443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=88.47 E-value=12 Score=38.36 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
.........|...|.+....|+++.|....-+|.+..+ +.++...|.. +...|+...|+..+++.++
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~-------~~i~~E~AK~------lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL-------PEIVLERAKL------LWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc-------chHHHHHHHH------HHhhccHHHHHHHHHHHHH
Confidence 34567888999999999999999999999999888763 7789999999 9999999999999999996
Q ss_pred cC-CC----------c------HHHHHHHHHHHHhcccH--HHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 142 LN-PS----------Y------LKVYQRRARLYQQSDKL--DEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 142 ~~-p~----------~------~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+ |+ . ..+.+..+.-....+++ ++-+..|+.+.++.|.....++.+|.-+
T Consensus 1731 ~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1731 KNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 64 32 1 12344444455555654 3577889999999998888777777433
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=87.69 E-value=6.9 Score=30.61 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhCCCCC-chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC------cHHHHHHHHH
Q psy13014 83 QWSESLAKYNEALRSCPRSC-SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS------YLKVYQRRAR 155 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~ 155 (229)
.....++.+.+|+....... ......+...+|.- |+..|++++|+..++.+....-. ...++..+..
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~e------y~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~ 226 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEE------YFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLE 226 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 34455667777776654321 22345667778888 99999999999999999655322 2446777889
Q ss_pred HHHhcccHHHHHHHHHHHH
Q psy13014 156 LYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al 174 (229)
|...+|+.+..+...-+.+
T Consensus 227 Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 227 CAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHhCCHHHHHHHHHHHh
Confidence 9999999988877655443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.54 E-value=9.4 Score=30.45 Aligned_cols=126 Identities=12% Similarity=0.093 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 62 QKLEQTAISLKDEGNALFR--LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
...|.+-++|...-.++-. ..++..-...-++.+..++.+ ...|..+-.++.-....+.-..+....++-..+
T Consensus 102 k~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrN-----yH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~ 176 (328)
T COG5536 102 KDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRN-----YHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSL 176 (328)
T ss_pred hcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccc-----cceeeeEeeeeecchhhccchhHHHHHHhHHHH
Confidence 4566666666655555443 366778888889999999988 777777766621111123445566667788888
Q ss_pred HhcCCCcHHHHHHHHH---HHHhccc------HHHHHHHHHHHHHhCCCcHHHHHHhccCch
Q psy13014 140 ITLNPSYLKVYQRRAR---LYQQSDK------LDEALADYQKILELDPNNRDAYVATKVSPD 192 (229)
Q Consensus 140 l~~~p~~~~~~~~la~---~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 192 (229)
|..++.|..+|...-. ..+..|+ +++-+++...++..+|++...|.-+..+..
T Consensus 177 I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~ 238 (328)
T COG5536 177 IETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSS 238 (328)
T ss_pred HhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhc
Confidence 9999999998887732 2233333 677788888899999999999987776653
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=87.11 E-value=2 Score=22.10 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
+..+|..+-..+.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 566788888888888898888888764
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=86.55 E-value=23 Score=32.53 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=30.2
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
..|-.++.- |...|+|+.|.+.|.++=.. .---..|.+.|++++|...-+++
T Consensus 766 ~yy~~iadh------yan~~dfe~ae~lf~e~~~~--------~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 766 GYYGEIADH------YANKGDFEIAEELFTEADLF--------KDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred ccchHHHHH------hccchhHHHHHHHHHhcchh--------HHHHHHHhccccHHHHHHHHHHh
Confidence 345556666 77777888777777654221 11233455667777666555444
|
|
| >KOG3807|consensus | Back alignment and domain information |
|---|
Probab=86.52 E-value=9.5 Score=31.31 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=61.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc----------
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL---------- 142 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~---------- 142 (229)
.+-....+.++..+-+..-..+++++|.. +.++..++.- ..--..+|...++++++.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eC-----A~AyvLLAEE--------Ea~Ti~~AE~l~k~ALka~e~~yr~sqq 255 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNEC-----ATAYVLLAEE--------EATTIVDAERLFKQALKAGETIYRQSQQ 255 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchh-----hhHHHhhhhh--------hhhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455566777888888888999999988 7777776644 112223333333333321
Q ss_pred -------------CCCcHH--HHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy13014 143 -------------NPSYLK--VYQRRARLYQQSDKLDEALADYQKILELDP 178 (229)
Q Consensus 143 -------------~p~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~p 178 (229)
...+.. .-.++|+|..++|+..+|++.++...+--|
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 111222 334689999999999999999998877666
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=86.52 E-value=1.5 Score=21.53 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 161 DKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
|+.+.|...|++++...|.++..|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567899999999999999999998876543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=86.11 E-value=9.6 Score=35.90 Aligned_cols=130 Identities=11% Similarity=0.034 Sum_probs=83.0
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc-------cCHHHHHHHHHHHHHh
Q psy13014 25 FILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL-------NQWSESLAKYNEALRS 97 (229)
Q Consensus 25 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~A~~~~~~al~~ 97 (229)
.++... ..|+.|...|.+.....+ ...+--++.+..|.+...+ ..+.+|+..|++.-.
T Consensus 483 ~~~~~~-~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 547 (932)
T PRK13184 483 DAFLAE-KLYDQALIFYRRIRESFP-------------GRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG- 547 (932)
T ss_pred HHHHhh-HHHHHHHHHHHHHhhcCC-------------CcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-
Confidence 445555 677778777766653222 2234445667777766543 246777777766543
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHH-------HHHHHHhcccHHHHHHHH
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR-------RARLYQQSDKLDEALADY 170 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~ 170 (229)
.|.- +-=|...|.+ |..+|+|++-++++.-|++..|+++..-.. +-.+... .-..|....
T Consensus 548 ~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 614 (932)
T PRK13184 548 GVGA-----PLEYLGKALV------YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFM 614 (932)
T ss_pred CCCC-----chHHHhHHHH------HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 3443 6668888889 999999999999999999999998764333 2222222 223455555
Q ss_pred HHHHHhCCCcHH
Q psy13014 171 QKILELDPNNRD 182 (229)
Q Consensus 171 ~~al~~~p~~~~ 182 (229)
--++..-|....
T Consensus 615 ~~~~~~~~~~~~ 626 (932)
T PRK13184 615 LLALWIAPEKIS 626 (932)
T ss_pred HHHHHhCccccc
Confidence 556666676543
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=85.84 E-value=24 Score=32.34 Aligned_cols=149 Identities=11% Similarity=0.114 Sum_probs=81.6
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH---hh------hhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLF---YL------FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
|.-+... |+++.|+..|-.+-..+..+...++ |. ...+........+-.++.-|...|+|+.|.+.|.++
T Consensus 713 g~hl~~~-~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 713 GDHLEQI-GQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hHHHHHH-HhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 3444445 7888888777554444433333332 11 111111122233445666666777777777666443
Q ss_pred ------HHhCCCCCc--------------hhhHHHHHhHhhhhhhhHH-------hhccCChHHHHHHHHHHH------h
Q psy13014 95 ------LRSCPRSCS--------------VSRAVFYANRSAALEKLAS-------YLSLEKPDQSILACSKAI------T 141 (229)
Q Consensus 95 ------l~~~p~~~~--------------~~~~~~~~~lg~~~~~~~~-------~~~~~~~~~A~~~~~~al------~ 141 (229)
+.+...... +....+|...+.-+.+.|. |...|.+++||+.|++.- .
T Consensus 792 ~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmir 871 (1636)
T KOG3616|consen 792 DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIR 871 (1636)
T ss_pred chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHH
Confidence 332222111 1123334444444555553 566788899999887642 1
Q ss_pred ----cCCCc-HHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 142 ----LNPSY-LKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 142 ----~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
..|++ ..++..+|.-+...|+...|...|-++
T Consensus 872 lv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 872 LVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 12333 456778888888888888888877665
|
|
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=84.96 E-value=9.9 Score=27.02 Aligned_cols=53 Identities=17% Similarity=0.041 Sum_probs=38.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
.+.....+.. .+..|++.-|.+..+.++..+|++..+...++.++..+|.-.+
T Consensus 70 ~d~vl~~A~~------~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 70 ADKVLERAQA------ALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHH------HHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 4445555566 7888999999999999999999999888888888888776443
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=84.67 E-value=12 Score=38.32 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHH
Q psy13014 22 FSCFILFILFSEIRTDCHQFERQ 44 (229)
Q Consensus 22 ~~~~~~~~~~~~~~~a~~~~~~~ 44 (229)
.++.+-+.. +.+..|..++++.
T Consensus 1388 tLa~aSfrc-~~y~RalmylEs~ 1409 (2382)
T KOG0890|consen 1388 TLARASFRC-KAYARALMYLESH 1409 (2382)
T ss_pred HHHHHHHhh-HHHHHHHHHHHHh
Confidence 345556666 7888888888773
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=84.40 E-value=7.8 Score=24.23 Aligned_cols=31 Identities=10% Similarity=0.099 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.+..+...|..+-+.|++.+|+.+|++++..
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445556666677777777777777666543
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG2422|consensus | Back alignment and domain information |
|---|
Probab=83.75 E-value=18 Score=31.90 Aligned_cols=117 Identities=12% Similarity=0.027 Sum_probs=80.8
Q ss_pred HccCHHHHHHHHHHHHHhCCCCC-------chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc----------
Q psy13014 80 RLNQWSESLAKYNEALRSCPRSC-------SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL---------- 142 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~---------- 142 (229)
....|++|...|.-++...+.+. .....+....++.+ +..+|+.+-|.....++|-.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~------~r~qgD~e~aadLieR~Ly~~d~a~hp~F~ 323 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADI------FRFQGDREMAADLIERGLYVFDRALHPNFI 323 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHH------HHHhcchhhHHHHHHHHHHHHHHHhccccc
Confidence 35668899999988877644331 12247788899999 88899988777666666521
Q ss_pred -----------CCCcH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-cHHHHHHhccCchHHHhhhhhcc
Q psy13014 143 -----------NPSYL---KVYQRRARLYQQSDKLDEALADYQKILELDPN-NRDAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 143 -----------~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~ 202 (229)
.|.|- .+++..-..+...|-+.-|.++++-.++++|. ||-+...+-.++..+.+++.-.+
T Consensus 324 ~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI 398 (665)
T KOG2422|consen 324 PFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWII 398 (665)
T ss_pred cccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHH
Confidence 12222 23445556667789999999999999999998 88776666666655555544433
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=83.71 E-value=8.7 Score=28.66 Aligned_cols=51 Identities=22% Similarity=0.159 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc
Q psy13014 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
.+..++..++.++..| ++..+.+++.++...|+.++|.....++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4455677778888888 68889999999999999999999999999999943
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=83.28 E-value=4.3 Score=28.82 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
........+......|++..|.+....++..+|++..+....+.++ +.++.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al-~~lg~ 119 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADAL-EQLGY 119 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH-HHHHH
Confidence 3456677888889999999999999999999999999999999888 55554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.11 E-value=2.4 Score=23.46 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=23.4
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
+.+|.+ |..+|+.+.|...+++++..
T Consensus 3 LdLA~a------yie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARA------YIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHH------HHHcCChHHHHHHHHHHHHc
Confidence 568888 99999999999999999964
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=83.07 E-value=27 Score=29.50 Aligned_cols=73 Identities=7% Similarity=-0.056 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+.....+=..|...+.|++|.....++.--...+ ....+...+.+|.+ ..-+.+|..|.+++-.|+...|.+
T Consensus 208 qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~s-nne~ARY~yY~GrI------kaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 208 QAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAAS-NNEWARYLYYLGRI------KAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccc-cHHHHHHHHHHhhH------HHhhcchhHHHHHHHHHHHhCcch
Confidence 33444455556666666777666655543211111 11235566667777 777777777777777777766654
|
|
| >PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=82.80 E-value=23 Score=31.41 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=62.2
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+.+.+..+.+....+.-+.-.... +...+..+.. +-..++.++|-++|++.+..+|+ ..++..|.-+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 84 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALT-----SLAMLKKAEF------LHDVNETERAYALYETLIAQNND--EARYEYARRL 84 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchh-----HHHHHHHhhh------hhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHH
Confidence 344555666666665555444433 5556666777 77888899999999999998887 6677888888
Q ss_pred HhcccHHHHHHHHHHHHHhCCCc
Q psy13014 158 QQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
.+.|-...|...++ ++.|.-
T Consensus 85 ~~~~~~~~~~~~~~---~~~~~~ 104 (578)
T PRK15490 85 YNTGLAKDAQLILK---KVSNGV 104 (578)
T ss_pred HhhhhhhHHHHHHH---HhCccH
Confidence 88888888887776 455543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.77 E-value=5.7 Score=30.58 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=55.4
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
+.+.++..+|+.....-++-+|.+...-..+=..+.-.|++++|...++-+-+++|++..
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 667889999999999999999999998888889999999999999999999999998764
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=82.39 E-value=17 Score=28.27 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHh-----cCCCcHH---HHHHHHHHH-HhcccHHHHHHHHHHHHH
Q psy13014 130 DQSILACSKAIT-----LNPSYLK---VYQRRARLY-QQSDKLDEALADYQKILE 175 (229)
Q Consensus 130 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~-~~~~~~~~A~~~~~~al~ 175 (229)
++|...|++|+. +.|.+|. ...+.+..+ .-+|+.++|+...++++.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 567777777765 4566654 344555555 458899998888888764
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=82.33 E-value=23 Score=28.03 Aligned_cols=80 Identities=10% Similarity=0.057 Sum_probs=48.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH----------------HHhCCCCCchhhHHHHHhHhhh
Q psy13014 53 HVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA----------------LRSCPRSCSVSRAVFYANRSAA 116 (229)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~~~~~~lg~~ 116 (229)
..+.|-........++..+..+|..+++.+++.+|..+|-.. ....|.. .+.+..+|..
T Consensus 75 ~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e-----~dlfi~RaVL 149 (260)
T PF04190_consen 75 AAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE-----ADLFIARAVL 149 (260)
T ss_dssp HHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS-------HHHHHHHHHH
T ss_pred HHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc-----hhHHHHHHHH
Confidence 334344222334478899999999999999999999887221 1112333 5666666655
Q ss_pred hhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 117 LEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 117 ~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.|..+++...|...++.-++.
T Consensus 150 -----~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 -----QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp -----HHHHTTBHHHHHHHHHHHHHH
T ss_pred -----HHHHhcCHHHHHHHHHHHHHH
Confidence 267789988888766655544
|
; PDB: 3LKU_E 2WPV_G. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=81.65 E-value=11 Score=26.09 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=51.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc------h----hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH-
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCS------V----SRAVFYANRSAALEKLASYLSLEKPDQSILACSKA- 139 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~----~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a- 139 (229)
+..+|...++.+++-.++-+|++|+.+..+-.. . .......|+|.. +...|+.+-.+++++-|
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~F------WR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADF------WRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHH------HHHcCChHHHHHHHHHHH
Confidence 456888999999999999999999887433210 1 124457788889 99999999998888654
Q ss_pred ---HhcCCCc
Q psy13014 140 ---ITLNPSY 146 (229)
Q Consensus 140 ---l~~~p~~ 146 (229)
+.+-|..
T Consensus 78 E~VltLiPQC 87 (140)
T PF10952_consen 78 EKVLTLIPQC 87 (140)
T ss_pred HHHHHhccCC
Confidence 4445543
|
|
| >PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking | Back alignment and domain information |
|---|
Probab=81.46 E-value=6.1 Score=23.98 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
+..+...|..+-+.|++++|+.+|.+++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334556677777788888888888777664
|
; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.42 E-value=13 Score=31.89 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=21.0
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 126 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
+|+.+.|.+..++ .+++..|..+|......|+++-|.++|+++
T Consensus 331 lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 331 LGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp CT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4555555443322 224445555555555555555555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.38 E-value=34 Score=29.44 Aligned_cols=45 Identities=11% Similarity=-0.001 Sum_probs=26.0
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 79 FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
.+.|+.+.|.+... ..++ +..|..+|.. .+..|+++-|..+|.++
T Consensus 329 l~lg~L~~A~~~a~-----~~~~-----~~~W~~Lg~~------AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 329 LQLGNLDIALEIAK-----ELDD-----PEKWKQLGDE------ALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHCT-HHHHHHHCC-----CCST-----HHHHHHHHHH------HHHTTBHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHH-----hcCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHhh
Confidence 45566666555431 1123 5667777777 77777777777666654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=80.48 E-value=12 Score=23.47 Aligned_cols=10 Identities=10% Similarity=0.069 Sum_probs=4.5
Q ss_pred HHhcCCCcHH
Q psy13014 139 AITLNPSYLK 148 (229)
Q Consensus 139 al~~~p~~~~ 148 (229)
++...|+++.
T Consensus 39 ~~~~~pD~~~ 48 (75)
T cd02682 39 IVKNYPDSPT 48 (75)
T ss_pred HHHhCCChHH
Confidence 3334455544
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 229 | ||||
| 2vyi_A | 131 | Crystal Structure Of The Tpr Domain Of Human Sgt Le | 1e-10 | ||
| 2dba_A | 148 | The Solution Structure Of The Tetratrico Peptide Re | 2e-08 | ||
| 1wao_1 | 477 | Pp5 Structure Length = 477 | 6e-08 | ||
| 2lni_A | 133 | Solution Nmr Structure Of Stress-Induced-Phosphopro | 9e-08 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 3e-07 | ||
| 1ihg_A | 370 | Bovine Cyclophilin 40, Monoclinic Form Length = 370 | 3e-07 | ||
| 1a17_A | 166 | Tetratricopeptide Repeats Of Protein Phosphatase 5 | 4e-07 | ||
| 2bug_A | 140 | Solution Structure Of The Tpr Domain From Protein P | 5e-07 | ||
| 2gw1_A | 514 | Crystal Structure Of The Yeast Tom70 Length = 514 | 1e-06 | ||
| 4gco_A | 126 | Central Domain Of Stress-Induced Protein-1 (Sti-1) | 2e-06 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 3e-06 | ||
| 1p5q_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Lengt | 3e-06 | ||
| 1kt1_A | 457 | Structure Of The Large Fkbp-Like Protein, Fkbp51, I | 3e-06 | ||
| 1kt0_A | 457 | Structure Of The Large Fkbp-like Protein, Fkbp51, I | 4e-06 | ||
| 2c2l_A | 281 | Crystal Structure Of The Chip U-Box E3 Ubiquitin Li | 6e-06 | ||
| 1qz2_A | 336 | Crystal Structure Of Fkbp52 C-Terminal Domain Compl | 7e-06 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 9e-06 | ||
| 3q47_B | 137 | Crystal Structure Of Tpr Domain Of Chip Complexed W | 1e-05 | ||
| 3pe3_A | 723 | Structure Of Human O-Glcnac Transferase And Its Com | 1e-05 | ||
| 3uq3_A | 258 | Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = | 3e-05 | ||
| 3upv_A | 126 | Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = | 5e-05 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 9e-05 | ||
| 1elw_A | 118 | Crystal Structure Of The Tpr1 Domain Of Hop In Comp | 3e-04 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-04 |
| >pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131 | Back alignment and structure |
|
| >pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148 | Back alignment and structure |
|
| >pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477 | Back alignment and structure |
|
| >pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370 | Back alignment and structure |
|
| >pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166 | Back alignment and structure |
|
| >pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514 | Back alignment and structure |
|
| >pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336 | Back alignment and structure |
|
| >pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 | Back alignment and structure |
|
| >pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457 | Back alignment and structure |
|
| >pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281 | Back alignment and structure |
|
| >pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137 | Back alignment and structure |
|
| >pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With A Peptide Substrate Length = 723 | Back alignment and structure |
|
| >pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258 | Back alignment and structure |
|
| >pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-37
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
+ + L+ EGN LF+ + +LA Y +AL +AV + NR+A
Sbjct: 21 ATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP--QDQAVLHRNRAAC---- 74
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
+L LE D++ SKAI + +K RR++ ++ +LD+A+ D Q+ + L+P N
Sbjct: 75 --HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132
Query: 181 RDA 183
+
Sbjct: 133 KVF 135
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 5e-34
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
A+ +K++GN F+ + +++ Y EA++ P A Y+NR+A Y
Sbjct: 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-----KDAKLYSNRAAC------YT 61
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
L + ++ C + I L P+++K Y R+A + +A+ YQK L+LD + ++A
Sbjct: 62 KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAA 121
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 1e-33
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
S++ A LK EGN ++ + ++ Y +A+ P + AV++ NR+AA
Sbjct: 5 SEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-----ANAVYFCNRAAA---- 55
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
Y L ++ C +AI ++P+Y K Y R +K EA+A Y+K LELDP+N
Sbjct: 56 --YSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113
Query: 181 RDAY 184
Sbjct: 114 ETYK 117
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-33
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 11/133 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
A + EG F + W ++ Y E ++ P A Y+NR+AA
Sbjct: 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAA------LAK 50
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
L ++I C+KAI +P++++ Y R+A + AL D +
Sbjct: 51 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110
Query: 186 ATKVSPDLKLKEK 198
A ++ +
Sbjct: 111 AREIDQLYYKASQ 123
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 5e-33
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A K++GN F+ + ++ YNEA++ P A+ Y+NR+A L
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-----ENAILYSNRAAC------LTKLM 61
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ +++ C I L+ ++K Y R+A + +A Y+ L++DP+N +A
Sbjct: 62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 6e-33
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
+ + A LK + N F+ + ++ Y++A+ P S A++Y NRS A
Sbjct: 6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLA---- 56
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
YL E ++ ++AI L+ Y+K Y RRA K AL DY+ ++++ P++
Sbjct: 57 --YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114
Query: 181 RDA 183
+DA
Sbjct: 115 KDA 117
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 1e-32
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
+A LK++GN LF ++ E+ A Y A+ P AV+Y NR+ YL
Sbjct: 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YL 54
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+++P+Q++ C +A+ L+ +K + + + + DEA+A+ Q+ L R +
Sbjct: 55 KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114
Query: 185 VATKVSPDLKLKEK 198
S K+K
Sbjct: 115 GDDIPSALRIAKKK 128
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-32
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 12/144 (8%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
+ LK EGNA ++S+++ Y +AL P + ++ +NR+AA Y
Sbjct: 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-----PIYLSNRAAA------YS 56
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +++ A ++P Y K + R A Y+K +E + N
Sbjct: 57 ASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA 116
Query: 185 VATKVSP-DLKLKEKNGATKLSPD 207
+ + K++E N + D
Sbjct: 117 MKRGLETTKRKIEEANRGAEPPAD 140
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 5e-31
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ LK++GN + ++L Y+EA++ P V Y+NRSAA Y
Sbjct: 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-----HNHVLYSNRSAA------YAK 50
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
++ K + L P + K Y R+A + ++ +EA Y++ L+ + NN
Sbjct: 51 KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 5e-28
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 20/155 (12%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS-------------RAV 108
KL+ +L+ +GN LF + E++ Y +AL
Sbjct: 6 DKLKS-VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64
Query: 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168
YAN S YL++ ++ S+ + + K RRA+ + KLDEA
Sbjct: 65 LYANMSQC------YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118
Query: 169 DYQKILELDPNNRDAYVATKVSPDLKLKEKNGATK 203
D + +L P + EK ++
Sbjct: 119 DLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR 153
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 9e-28
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+A LK++GN LF ++ E+ A Y A+ P AV+Y NR+ YL
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YLK 50
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+++P+Q++ C +A+ L+ +K + + + + DEA+A+ Q+ L R +
Sbjct: 51 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Query: 186 ATKVSPDLKLKEK 198
S K+K
Sbjct: 111 DDIPSALRIAKKK 123
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 2e-26
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 18/133 (13%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS-----------RAVFY 110
+K++ A +K+EGN F+ N+ +E++ KY EAL +
Sbjct: 33 EKVQS-AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91
Query: 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
N + Y + ++I SK + ++ + +K + L+EA +
Sbjct: 92 LNLATC------YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENL 145
Query: 171 QKILELDPNNRDA 183
K L+PNN D
Sbjct: 146 YKAASLNPNNLDI 158
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 7e-26
Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 18/127 (14%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
S + AI+ KD GNA ++ + ++ Y++A+ P + FY N++A
Sbjct: 1 SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-----ITFYNNKAAV---- 51
Query: 121 ASYLSLEKPDQSILACSKAITLNPS-------YLKVYQRRARLYQQSDKLDEALADYQKI 173
Y +K + + C KA+ + K R +Q+ + L A+ + +
Sbjct: 52 --YFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109
Query: 174 LELDPNN 180
L +
Sbjct: 110 LSEFRDP 116
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS----------RAVFYA 111
+KLEQ + +K+ G F+ ++ ++L +Y + + S S R +
Sbjct: 142 EKLEQ-STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 200
Query: 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171
N + +L L+ +I +C+KA+ L+ + K RR + + + A AD+Q
Sbjct: 201 NLAMC------HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254
Query: 172 KILELDPNNRDA 183
K+L+L PNN+ A
Sbjct: 255 KVLQLYPNNKAA 266
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-25
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS 122
K + L + L R +++++ +KY +++ P S + K
Sbjct: 229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKD-- 285
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
EKP ++I CS+ + + P + + RA Y + DEA+ DY+ E + N++
Sbjct: 286 ----EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341
Query: 183 AY 184
Sbjct: 342 IR 343
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-24
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129
+ G L Q +++L++++ A+ P + + Y R+ +L++ K
Sbjct: 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATV------FLAMGKS 53
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
++ +K I L + +R L + KLDEA D++K+L+ +P+ ++ A
Sbjct: 54 KAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 5e-20
Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 11/135 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
L+ + F ++ ++ ++ L C A R+ K
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD-----AELRELRAECFIKE----- 167
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+P ++I A L + + + + LY Q + +L++ ++ L+LD +++ +
Sbjct: 168 -GEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226
Query: 186 ATKVSPDLKLKEKNG 200
K L ++
Sbjct: 227 HYKQVKKLNKLIESA 241
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 8e-13
Identities = 9/123 (7%), Positives = 40/123 (32%), Gaps = 23/123 (18%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ + ++++ A + + + S +L + S+
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEA-----FYKISTLYYQL------GDHELSLS 209
Query: 135 ACSKAITLNPSYLKVYQRRARL------------YQQSDKLDEALADYQKILELDPNNRD 182
+ + L+ + + + ++ + + +A + Y+ +++ +P+ +
Sbjct: 210 EVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269
Query: 183 AYV 185
V
Sbjct: 270 YTV 272
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 2e-11
Identities = 17/74 (22%), Positives = 29/74 (39%)
Query: 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
A+ LE L+ + ++ A+ +P Y RRA ++ K AL D
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 60
Query: 171 QKILELDPNNRDAY 184
K++ L + A
Sbjct: 61 TKVIALKMDFTAAR 74
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ + + E++ +E L+ P + +R+ A YL E D++I
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDN-----VNALKDRAEA------YLIEEMYDEAIQ 327
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQ 159
A N + ++ + + +
Sbjct: 328 DYEAAQEHNENDQQIREGLEKAQRL 352
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 5e-25
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 18/122 (14%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ A+ K+ GN ++ + +L Y++A P + + N++A Y
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-----MTYITNQAAV------YFE 50
Query: 126 LEKPDQSILACSKAITLNP-------SYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
++ C KAI + K Y R Y + +K +A+ Y K L
Sbjct: 51 KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
Query: 179 NN 180
Sbjct: 111 TP 112
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 8e-25
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 11/117 (9%)
Query: 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129
+ G L Q +++L++++ A+ P + + Y R+ +L++ K
Sbjct: 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATV------FLAMGKS 76
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
++ +K I L + +R L + KLDEA D++K+L+ +P+ + A
Sbjct: 77 KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 2e-23
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS 122
K + L + L R +++++ +KY +++ P S + K
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SIAEYTVRSKERICHCFSKD-- 308
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
EKP ++I CS+ + + P + + RA Y + DEA+ DY+ E + N++
Sbjct: 309 ----EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQ 364
Query: 183 AY 184
Sbjct: 365 IR 366
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 9e-20
Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
L+ + F ++ ++A ++ L C A R+ K
Sbjct: 141 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD-----AELRELRAECFIKE----- 190
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+P ++I A L + + + + LY Q + +L++ ++ L+LD +++ +
Sbjct: 191 -GEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249
Query: 186 ATKVSPDLKLKEKNG 200
K L ++
Sbjct: 250 HYKQVKKLNKLIESA 264
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 9e-16
Identities = 16/116 (13%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANR-SAALEKLASYLSLEKPDQSI 133
++L SL++ E L+ + + +E + + +
Sbjct: 218 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277
Query: 134 LACSKAITLNPSY----LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+ PS ++ +R + + +K EA+ ++L+++P+N +A
Sbjct: 278 SKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-10
Identities = 12/112 (10%), Positives = 37/112 (33%), Gaps = 11/112 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ + + E++ +E L+ P + +R+ A E D++I
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDN-----VNALKDRAEAYLIE------EMYDEAIQ 350
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
A N + ++ + + + + + ++ + ++ A
Sbjct: 351 DYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-24
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A + EG F + W ++ Y E ++ P A Y+NR+AAL KL S+
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAALAKLMSF---- 189
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++I C+KAI +P++++ Y R+A + AL D +
Sbjct: 190 --PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGS 244
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-18
Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 12/117 (10%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A K EGN ++ Q+ E++ YN+A + NR+AA + Y
Sbjct: 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD------ITYLNNRAAAEYEKGEY---- 54
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ +I + A+ Y+ ++ + + L D +K +E + +
Sbjct: 55 --ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 3e-16
Identities = 15/125 (12%), Positives = 37/125 (29%), Gaps = 20/125 (16%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ E + R+ L + + +S + + L K
Sbjct: 64 AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT------EHRTADILTK 117
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
L + ++ + +NP + + + Y A+ Y ++++ P
Sbjct: 118 LRNA------EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171
Query: 180 NRDAY 184
+ Y
Sbjct: 172 DARGY 176
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 9e-24
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
K++GN+LF+ + E++ Y++ + + P V Y+N++ AL KL Y
Sbjct: 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-----QNPVGYSNKAMALIKLGEY-- 54
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK-ILELDPNNRDA 183
Q+I C + + + V R Y+ + A+ Q ++E+D
Sbjct: 55 ----TQAIQMCQQGLRYTSTAEHVAIRSKLQYRL-ELAQGAVGSVQIPVVEVDELPEGY 108
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 4e-22
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
++ A++LKD+GN FR ++ +++ YN AL VFY+N SA Y+
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED------PVFYSNLSAC------YV 50
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI-LELDPNNRDA 183
S+ + + +KA+ L P Y KV RRA + K +A+ D + L D N+
Sbjct: 51 SVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110
Query: 184 Y 184
Sbjct: 111 E 111
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 2e-19
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
E+ AISL+ G F N + +A+ PR Y +
Sbjct: 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR------VNSYIYMALI------MA 281
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ KA+ L+ + VY R ++ D+A D+ K ELDP N Y
Sbjct: 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341
Query: 185 V 185
+
Sbjct: 342 I 342
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 6e-19
Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK---LASYLSLEKPDQ 131
L N + ++L +Y+ A+ + Y + + K L ++E +
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKL-----DGIYVGIAPLVGKATLLTRNPTVENFIE 433
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ KA L+P + A++ Q + +DEA+ +++ +L +
Sbjct: 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 8e-17
Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 19/126 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ L G F L + ++ +++A P + Y + +
Sbjct: 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN-----IFPYIQLACLAYR 350
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+ D S+A P +V A + + D+AL Y +EL+
Sbjct: 351 ENKF------DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404
Query: 180 NRDAYV 185
YV
Sbjct: 405 LDGIYV 410
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 1e-15
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 18/124 (14%)
Query: 68 AISLKDE-------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
AI L + N +E +++AL+ + + Y +R
Sbjct: 263 AIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-----SSVYYHRGQMNFI- 316
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
L+ DQ+ KA L+P + Y + A L + +K D+ + + P
Sbjct: 317 -----LQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371
Query: 181 RDAY 184
+
Sbjct: 372 PEVP 375
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-10
Identities = 15/125 (12%), Positives = 45/125 (36%), Gaps = 2/125 (1%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
+K +Q + + F + + + A Y+E+ + + ++ + + +
Sbjct: 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADE 210
Query: 122 SYL-SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
S+ + ++ + ++ L + + A D +K +EL P
Sbjct: 211 SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV 270
Query: 181 RDAYV 185
++Y+
Sbjct: 271 -NSYI 274
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-05
Identities = 11/106 (10%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+ + + E+ +A + PRS + + E
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRS-----EQAKIGLAQMKLQQ------E 463
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173
D++I ++ L + + Q + ++ K+ + + +
Sbjct: 464 DIDEAITLFEESADLARTMEEKLQAIT--FAEAAKVQQRIRSDPVL 507
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 8e-22
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ A LK + N F+ + ++ Y++A+ P S A++Y NRS A YL
Sbjct: 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNP-----SNAIYYGNRSLA------YLR 52
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E ++ ++AI L+ Y+K Y RRA K AL DY+ ++++ P+++DA
Sbjct: 53 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 2e-20
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 12/133 (9%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
+ A+ LK+ GN F ++E++ Y A+ P VFY+N SA
Sbjct: 22 QAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNE-----PVFYSNISACYIST---- 72
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++ I +KA+ + P + K RRA + +A+ D + L+ + A
Sbjct: 73 --GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL-SLNGDFDGAS 129
Query: 185 VATKVSPDLKLKE 197
+ + +L +
Sbjct: 130 IEPMLERNLNKQA 142
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 3e-18
Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 12/120 (10%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
E A++L G F N ++ E++ P Y + L
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADK---- 289
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E + KA+ LNP Y Y R ++Y A D+QK L+P N Y
Sbjct: 290 --ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 6e-17
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 15/120 (12%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA----------SYL 124
L + ++ +Y+ A R + + K + L
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQ-----EKIHVGIGPLIGKATILARQSSQDPTQL 439
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
EK + +I +KA L+P + A+L Q +K+DEA+ ++ L +
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 1e-16
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS 122
L T S L E + +A+ P Y +R
Sbjct: 271 NLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-----PPTYYHRGQM------ 319
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
Y L+ + KA +LNP + Y + A L + K E+ A + + P +
Sbjct: 320 YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE 379
Query: 183 AY 184
Sbjct: 380 VP 381
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 3e-16
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
Q A+ L E G F L + + + +A P + Y + L
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN-----VYPYIQLACLL 354
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
K + +S ++ P+ +V A + D A+ Y L+
Sbjct: 355 YKQGKF------TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Query: 178 PNNRDAYV 185
+V
Sbjct: 409 EVQEKIHV 416
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 5e-12
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145
+ P S + AV NR + +++I AI L+P+
Sbjct: 5 NGEPDIAQLKGLSP-SQRQAYAVQLKNRGNHFFTA------KNFNEAIKYYQYAIELDPN 57
Query: 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
Y + Y + L++ + K LE+ P++ A
Sbjct: 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKAL 96
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 5e-10
Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 14/134 (10%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
E + L + ++ L + S + YA S AL++L S
Sbjct: 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207
Query: 125 -------------SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171
S + + A + L + + + L +A Q
Sbjct: 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267
Query: 172 KILELDPNNRDAYV 185
+ + L P ++Y+
Sbjct: 268 ESINLHPTP-NSYI 280
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-08
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 13/110 (11%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+++ ++ +A PRS + ++ EK D++I
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPRS-----EQAKIGLAQLKLQM------EKIDEAIE 483
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ L + + Q A + ++ K+ + L I Y
Sbjct: 484 LFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKMELTLARY 531
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 128 KPDQSILACSKAITLNPS----YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
++ L+PS Y + R + + +EA+ YQ +ELDPN
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 184 Y 184
Y
Sbjct: 62 Y 62
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 86.6 bits (214), Expect = 2e-20
Identities = 24/150 (16%), Positives = 56/150 (37%), Gaps = 18/150 (12%)
Query: 46 FYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS 105
+ + ++ A K +GN+LF+ + E++ +Y A+
Sbjct: 157 GFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQ 216
Query: 106 ------------RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRR 153
+ + N +A + L++ D++I C+ +T K RR
Sbjct: 217 LYGKYQDMALAVKNPCHLNIAAC------LIKLKRYDEAIGHCNIVLTEEEKNPKALFRR 270
Query: 154 ARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ + ++D A D++K + P+++
Sbjct: 271 GKAKAELGQMDSARDDFRKAQKYAPDDKAI 300
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 6e-19
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
NAL +E+ YN ALR CP A N + + ++++
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTH-----ADSLNNLANIKREQ------GNIEEAVR 326
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ + P + + A + QQ KL EAL Y++ + + P DAY
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 2e-18
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GN L + ++A Y AL P AV + N + + D +I
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNH-----AVVHGNLACVYYEQ------GLIDLAID 258
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+AI L P + Y A ++ + EA Y L L P + D+
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 1e-17
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GN Q E++ Y ALR P Y N +AAL + ++
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDF-----IDGYINLAAALVAA------GDMEGAVQ 122
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A A+ NP V L + +L+EA A Y K +E PN A+
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 1e-17
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GN L L + E+ A Y +A+ + P AV ++N + +I
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNF-----AVAWSNLGCVFNAQ------GEIWLAIH 190
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+TL+P++L Y + +++ D A+A Y + L L PN+ +
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 3e-16
Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ ++ + + + R P + S+ + + D+S
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDN-----TGVLLLLSSIHFQC------RRLDRSAH 54
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ AI NP + Y +Y++ +L EA+ Y+ L L P+ D Y
Sbjct: 55 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-10
Identities = 10/68 (14%), Positives = 23/68 (33%)
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+E + + C + P V + ++ Q +LD + ++
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 177 DPNNRDAY 184
+P +AY
Sbjct: 63 NPLLAEAY 70
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-07
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 19/102 (18%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
TA+ L N E++ Y +AL P + ++N ++ L
Sbjct: 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA-----HSNLASVL 349
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159
++ K ++++ +AI ++P++ Y ++
Sbjct: 350 QQQ------GKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 8e-05
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A Q+ + A ++ +P+N
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVL 36
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 7e-18
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 19/125 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ L GN + E+ + +ALR+ + + L K
Sbjct: 83 ALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN-----GDLFYMLGTVLVK 137
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
L E+P ++ +A+ LN + + + LDEAL+ + + E DP
Sbjct: 138 L------EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Query: 180 NRDAY 184
+ DA+
Sbjct: 192 HADAF 196
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 4e-16
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 19/125 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ E G L +L Q +L A+ L
Sbjct: 117 ALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND-----TEARFQFGMCLAN 171
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
D+++ + +P + + Y + ++AL K +++ P+
Sbjct: 172 E------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Query: 180 NRDAY 184
+ A
Sbjct: 226 HMLAL 230
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 1e-15
Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ ++ + +A+ A+ Y N + L + + ++++
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKED-----AIPYINFANLLSSV------NELERALA 78
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ L+ S Y +Y + EA ++K L N D +
Sbjct: 79 FYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 1e-14
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145
S ++ + PR + + + +++ A +KAI N
Sbjct: 3 SSHHHHHHSSGLVPRG-----SHMASMTGGQQ--MGRGSEFGDYEKAAEAFTKAIEENKE 55
Query: 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
Y A L ++L+ ALA Y K LELD + AY
Sbjct: 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAY 94
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 6e-07
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 19/102 (18%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
Q A+ L + G L E+L+++ P A + N
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH-----ADAFYNAGVTY 203
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159
E ++++ KAI + P ++ + L
Sbjct: 204 AYK------ENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 7e-06
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 4/59 (6%)
Query: 130 DQSILACSKAITLNPSYLKVY----QRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
S + L P + ++ + ++A + K +E + + Y
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 2e-17
Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 11/128 (8%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS--- 122
Q+ + + +A Q ++++ + + + + ++ N E +
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDR---TEMYYWTNVDKNSEISSKLAT 58
Query: 123 -----YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
Y D++ L + + P+ + + A + + +AL Y+KIL+L+
Sbjct: 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE 118
Query: 178 PNNRDAYV 185
+N A +
Sbjct: 119 ADNLAANI 126
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 3e-13
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 10/106 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
Q ++L Y + L+ + + YL+ E+ + +
Sbjct: 95 AEMQVCRGQEKDALRMYEKILQLEADNLAA-----NIFLGNYY-----YLTAEQEKKKLE 144
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
K ++ R + + ++A QK++ P+
Sbjct: 145 TDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 4e-13
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 14/133 (10%)
Query: 54 VLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANR 113
+ ++ + E ++ + A + + ++ Y E L+ P N
Sbjct: 40 MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP------------NN 87
Query: 114 SAALEKLA-SYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR-LYQQSDKLDEALADYQ 171
LE A + + ++ K + L L Y +++ + L
Sbjct: 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147
Query: 172 KILELDPNNRDAY 184
K L + A
Sbjct: 148 KKLSSPTKMQYAR 160
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 79.3 bits (195), Expect = 2e-17
Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 49 QFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS--- 105
F + +++ + A +K++G F+ ++ +++ +Y + + +S
Sbjct: 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKE 308
Query: 106 RAVFYANRSAALEKLA-SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164
+ AA LA YL L + +++ C KA+ L+ + K RR ++ +
Sbjct: 309 SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFE 368
Query: 165 EALADYQKILELDPNNRDA 183
A D++K+LE++P N+ A
Sbjct: 369 SAKGDFEKVLEVNPQNKAA 387
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 4e-17
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G + + ++S+++ + + + A K D+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFD-----VDVALHLGIAYVKT------GAVDRGTE 63
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+++ P +KV Y Q K D A+ K+ E +P N +
Sbjct: 64 LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR 113
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 1e-16
Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 19/127 (14%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
+ G A + +L P +
Sbjct: 32 EQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN-----VKVATVLGLTY 86
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
++ +K D ++ K NP V R + DEA+ ++ L L
Sbjct: 87 VQV------QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140
Query: 178 PNNRDAY 184
PN +
Sbjct: 141 PNEGKVH 147
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 70.9 bits (175), Expect = 2e-15
Identities = 22/125 (17%), Positives = 49/125 (39%), Gaps = 19/125 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
+++ + G ++ ++ ++ + + P + AL+
Sbjct: 68 SLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN-----FNVRFRLGVALDN 122
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
L + D++I + A+ L P+ KV++ A Y+Q + +EAL ++K ELD
Sbjct: 123 L------GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
Query: 180 NRDAY 184
Sbjct: 177 ASVEL 181
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 4e-05
Identities = 4/45 (8%), Positives = 19/45 (42%)
Query: 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + Y+ + + ++ + +A+ +++ + D + D
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVA 45
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 7e-17
Identities = 25/110 (22%), Positives = 38/110 (34%), Gaps = 7/110 (6%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L Q LA+ + L S + RA R Y SL +
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDD-ERAQLLYERGVL------YDSLGLRALARN 64
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
S+A+ + P +V+ Q+ D A + +LELDP A+
Sbjct: 65 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH 114
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-15
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L + + +++AL P + L + D +
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIYLTQA------GNFDAAYE 98
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A + L+P+Y + R + A D + DPN+
Sbjct: 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS 148
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 8e-11
Identities = 12/140 (8%), Positives = 29/140 (20%), Gaps = 35/140 (25%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL------EKLASYLS--- 125
G AL+ + + + P A +
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPND-----PFRSLWLYLAEQKLDEKQAKEVLKQHFE 172
Query: 126 ---------------------LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164
++ + +L + + Y LD
Sbjct: 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD 232
Query: 165 EALADYQKILELDPNNRDAY 184
A A ++ + + +N +
Sbjct: 233 SATALFKLAVANNVHNFVEH 252
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 5e-10
Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 12/111 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L + + + ++ L P + NR AL + +
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTY-----NYAHLNRGIALYYG------GRDKLAQD 132
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+P+ Q+ D+ +A ++ E + +
Sbjct: 133 DLLAFYQDDPNDPFRSLWLYLAEQKLDE-KQAKEVLKQHFEKSDKEQWGWN 182
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 7/96 (7%), Positives = 17/96 (17%), Gaps = 11/96 (11%)
Query: 77 ALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILAC 136
+ A + L D +
Sbjct: 190 NISEQTLMERLKADATDNTSLAEHLSET-----NFYLGKYYLSL------GDLDSATALF 238
Query: 137 SKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172
A+ N ++ + + LA+ +
Sbjct: 239 KLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 8e-17
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L + Q S ++ +Y A+ +R Y + +I
Sbjct: 81 GKILMKKGQDSLAIQQYQAAVDRDT-----TRLDMYGQIGSYFYNK------GNFPLAIQ 129
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
K I + KV+ + Y + + +A + + K+LEL PN Y
Sbjct: 130 YMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY 179
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-16
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ LF+ N ++E++ +N+ S Y R+ +LA Y + + I
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNS-----PYIYNRRAVCYYELAKY---DLAQKDIE 61
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + ++ ++ + + A+ YQ ++ D D Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 8e-14
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G A + ++ ++ + + + L P + Y R+ A K +
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNI-----YIGYLWRARANAAQDPD---TKQGLAKP 200
Query: 135 ACSKAITL--------NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
K I + ++ + A Y + +A A ++ IL LDP N+ A
Sbjct: 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 8e-05
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+N V R A +++ EA+ + K+ N+ Y
Sbjct: 1 MND---DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY 40
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 1e-16
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 4/111 (3%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-YLSLEKPDQSI 133
G F+ +W + + +AL + + L L L+K +++
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE---PLLNNLGHVCRKLKKYAEAL 256
Query: 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A+ L P Y ++ + A+ + L L ++ +
Sbjct: 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 12/124 (9%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA 121
L++ + + + + + P A L +L
Sbjct: 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-----FHASCLPVHIGTLVEL- 69
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ-QSDKLDEALADYQKILELDPNN 180
K ++ K + L PS + Y K + A K L+
Sbjct: 70 -----NKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124
Query: 181 RDAY 184
A+
Sbjct: 125 GPAW 128
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 5e-10
Identities = 12/109 (11%), Positives = 31/109 (28%), Gaps = 11/109 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G++ ++ +++A Y A + + +
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGC-----HLPMLYIGLEYGLT------NNSKLAER 180
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
S+A+++ P V + Q+ + A + LE +
Sbjct: 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 5e-10
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G+ +L +++E+L + +AL P++ S Y+ + + ++
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNAST-----YSAIGYIHSLM------GNFENAVD 291
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
A+ L + EA
Sbjct: 292 YFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGA 327
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 8e-09
Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 34/139 (24%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA------------- 121
L LN+ +E ++ + P + V + +
Sbjct: 63 IGTLVELNKANELFYLSHKLVDLYPSN-----PVSWFAVGCYYLMVGHKNEHARRYLSKA 117
Query: 122 ----------------SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165
S+ + DQ++ A A L Y ++
Sbjct: 118 TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177
Query: 166 ALADYQKILELDPNNRDAY 184
A + + L + P +
Sbjct: 178 AERFFSQALSIAPEDPFVM 196
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 11/102 (10%)
Query: 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144
S E++ + V + + + S + +P
Sbjct: 5 KPSETVIPESVDGLQENLDV-----VVSLAERHYYNCDF------KMCYKLTSVVMEKDP 53
Query: 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
+ + +K +E K+++L P+N ++ A
Sbjct: 54 FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 72.4 bits (179), Expect = 2e-16
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GNA ++ + E++ Y +AL PRS A + N A K D++I
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRS-----AEAWYNLGNAYYKQ------GDYDEAIE 56
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ L+P + + Y + DEA+ YQK LELDP + +A+
Sbjct: 57 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 69.0 bits (170), Expect = 3e-15
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 19/121 (15%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A+ L GNA ++ + E++ Y +AL PRS A + N A K
Sbjct: 27 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-----AEAWYNLGNAYYK 81
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
D++I KA+ L+P + + Y + DEA+ YQK LELDP
Sbjct: 82 Q------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Query: 180 N 180
+
Sbjct: 136 S 136
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 3e-16
Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 23/160 (14%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR---SCPRSCSVS--------RAVF 109
K+ + LK+ GN F+ W ++ KY + LR + +
Sbjct: 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSC 275
Query: 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
N A L + ++ +C +A+ ++PS K RRA+ +Q + D+ALAD
Sbjct: 276 VLNIGAC------KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 329
Query: 170 YQKILELDPNNRD-----AYVATKVSPDLKLKEKNGATKL 204
+K E+ P ++ V K+ K KEK K+
Sbjct: 330 LKKAQEIAPEDKAIQAELLKVKQKIK-AQKDKEKAAYAKM 368
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 70.1 bits (173), Expect = 7e-16
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
GNA ++ + E++ Y +AL P + A + N A K D++I
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNN-----AEAWYNLGNAYYKQ------GDYDEAIE 64
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ L+P+ + + Y + DEA+ YQK LELDPNN +A
Sbjct: 65 YYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK 114
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 8e-05
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 142 LNPS-YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++P + + Y + DEA+ YQK LELDPNN +A+
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 46
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 8e-16
Identities = 11/111 (9%), Positives = 29/111 (26%), Gaps = 11/111 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+A + + L P A + ++ ++ +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGH-----PEAVARLGRV------RWTQQRHAEAAV 78
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+A P + + + + + + A A Y + +L P
Sbjct: 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 5e-08
Identities = 9/56 (16%), Positives = 16/56 (28%)
Query: 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ +L A+ P + A Q+ L L P + +A
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-15
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 16/129 (12%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVS--RAVFYANRSA 115
Q++ +L G F + ++ + AL ++ S A +AN
Sbjct: 465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524
Query: 116 ALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175
A KL + D +I A ++ + L+ + V+ A +Y A+ + L
Sbjct: 525 AYRKL------KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578
Query: 176 LDPNNRDAY 184
+ PN A
Sbjct: 579 ISPNEIMAS 587
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-13
Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 33/156 (21%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
YL LE+++ L + + LF +++ + LA + L P Y A+
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-----YNLDVYPLHLAS 348
Query: 117 LEKL----------------------------ASYLSLEKPDQSILACSKAITLNPSYLK 148
L + YL + K ++ SK+ T++P +
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408
Query: 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ A + + D+A++ Y L Y
Sbjct: 409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPY 444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-10
Identities = 10/106 (9%), Positives = 27/106 (25%), Gaps = 11/106 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
++ + ++++ Y A R + + Y +L +
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGT-----HLPYLFLGMQHMQL------GNILLANE 462
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
+ L + + + A+ +Q L L
Sbjct: 463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-10
Identities = 24/136 (17%), Positives = 37/136 (27%), Gaps = 26/136 (19%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQS-- 132
G L+ + + Y EAL + + + A E+ L L S
Sbjct: 207 GQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266
Query: 133 ------------------------ILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168
+I + +A + + LA
Sbjct: 267 DAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA 326
Query: 169 DYQKILELDPNNRDAY 184
KILE+DP N D Y
Sbjct: 327 ITTKILEIDPYNLDVY 342
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 6e-10
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G +N+ SE+ ++++ P+ + + + + + DQ+I
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQF-----GPAWIGFAHS------FAIEGEHDQAIS 428
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A + A L Y + Q + A Q L +
Sbjct: 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 5e-09
Identities = 12/115 (10%), Positives = 33/115 (28%), Gaps = 11/115 (9%)
Query: 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129
SL Y ++ +S + ++ L + +
Sbjct: 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDL-----LLCKADTLFVRSRF------ 321
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ +K + ++P L VY +S + ++ +++ P +
Sbjct: 322 IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTW 376
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 7e-07
Identities = 12/86 (13%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G+A +L + ++ N+ L +V + + YL + P +I
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANV-----HTAIALV------YLHKKIPGLAIT 571
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQS 160
+++ ++P+ + R +++
Sbjct: 572 HLHESLAISPNEIMASDLLKRALEEN 597
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-05
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 17/139 (12%)
Query: 58 LFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSR-AVFYANRSAA 116
F +K + + N F L Q Y A + +R + +
Sbjct: 104 AFVGEK----VLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFC 159
Query: 117 LEKLASY-----------LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165
L KL + + + + + + R ++Y D
Sbjct: 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEA-SMCYLRGQVYTNLSNFDR 218
Query: 166 ALADYQKILELDPNNRDAY 184
A Y++ L +D +A+
Sbjct: 219 AKECYKEALMVDAKCYEAF 237
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 2e-15
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 11/115 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS-----LEKP 129
+L + +L + PR Y S A L
Sbjct: 46 ARTQLKLGLVNPALENGKTLVARTPRY-----LGGYMVLSEAYVALYRQAEDRERGKGYL 100
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+Q++ A +NP Y ++ +R +Y + D+A A ++ L L+ +
Sbjct: 101 EQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTP-EIR 154
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-15
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L+ L ++ +L + AL+ P+ + K L + ++
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQD-----PEALYWLARTQLK------LGLVNPALE 60
Query: 135 ACSKAITLNPSYLKVY-----------QRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ P YL Y ++ + L++AL+ + ++P
Sbjct: 61 NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120
Query: 184 Y 184
+
Sbjct: 121 H 121
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-12
Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 20/120 (16%)
Query: 68 AISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK 119
A + G L + ++ A +AL + +
Sbjct: 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT------PEIRSALAELYLS 163
Query: 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+ + D+++ +KA+ P L + R A K +EA +
Sbjct: 164 M------GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 3e-12
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 12/113 (10%)
Query: 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131
+ + ++L+ +A R PR A + R L + D+
Sbjct: 88 RQAEDRERGKGYLEQALSVLKDAERVNPRY-----APLHLQRGLVYALL------GERDK 136
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A+ L ++ A LY +LDEALA Y K LE P + D
Sbjct: 137 AEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLR 188
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-15
Identities = 22/128 (17%), Positives = 45/128 (35%), Gaps = 11/128 (8%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
Y F + + +EG ++ +L +E+ + ++ P R + +
Sbjct: 10 YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-----EREEAWRSLGLT 64
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ EK +I+A + A L+P + V+ A + + ALA + L
Sbjct: 65 QAEN------EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS 118
Query: 177 DPNNRDAY 184
P
Sbjct: 119 QPQYEQLG 126
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-15
Identities = 18/133 (13%), Positives = 45/133 (33%), Gaps = 11/133 (8%)
Query: 52 FHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111
+ L + ++ ++++ E N++ E + AL P + +A
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQL-----HA 176
Query: 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171
+ D + +A+ L P +++ + ++ EAL Y
Sbjct: 177 SLGVLYNLS------NNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYN 230
Query: 172 KILELDPNNRDAY 184
+ L+++P
Sbjct: 231 RALDINPGYVRVM 243
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-14
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G N + + A A+ P A + A L +P +++
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDD-----AQLWNKLGATLANG------NRPQEALD 227
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A ++A+ +NP Y++V A Y + D A + + +
Sbjct: 228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-10
Identities = 12/127 (9%), Positives = 35/127 (27%), Gaps = 26/127 (20%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G + ++ N A P+ +A + + + ++
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKD-----IAVHAALAVSHTNE------HNANAALA 110
Query: 135 ACSKAITLNPSYLKVYQRRAR---------------LYQQSDKLDEALADYQKILELDPN 179
+ + P Y ++ + + ++ E LE++PN
Sbjct: 111 SLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN 170
Query: 180 NRDAYVA 186
+ + +
Sbjct: 171 DAQLHAS 177
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-06
Identities = 22/131 (16%), Positives = 40/131 (30%), Gaps = 31/131 (23%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
+ A+ L+ + G L N+ E+L YN AL P R N + +
Sbjct: 196 RRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGY---VRV--MYNMAVSY 250
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA------------RLYQQSDKLDE 165
++ Y D + +AI + + L ++ D
Sbjct: 251 SNMSQY------DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304
Query: 166 ALADYQKILEL 176
Y + +E
Sbjct: 305 VELTYAQNVEP 315
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 3e-15
Identities = 24/128 (18%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
+ A++ G L+ ++ E+ + EA + Y RS
Sbjct: 95 RKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD----------TLYPERSRVF 144
Query: 118 EKLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
E L L ++KP Q+ K++ LN + V A L + + A Y +
Sbjct: 145 ENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQG 204
Query: 177 DPNNRDAY 184
N +
Sbjct: 205 GGQNARSL 212
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 6e-11
Identities = 15/64 (23%), Positives = 27/64 (42%)
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
YL +Q+ + KA+ ++PS + A ++Q + A +Y+K L D N
Sbjct: 45 LGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104
Query: 181 RDAY 184
Sbjct: 105 ARVL 108
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 15/112 (13%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G + ++ +AL P S A +A + + +P +
Sbjct: 44 GLGYLQRGNTEQAKVPLRKALEIDPSS-----ADAHAALAVVFQTE------MEPKLADE 92
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE--LDPNNRDAY 184
KA+ + +V + + +EA + + L P +
Sbjct: 93 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF 144
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 3e-09
Identities = 11/109 (10%), Positives = 32/109 (29%), Gaps = 11/109 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G ++ + +++ + ++LR + + L K + +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRN-----QPSVALEMADLLYKE------REYVPARQ 196
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ RL + + D A + ++ L P + +
Sbjct: 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-07
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALA 168
+ + S+ L S++ + P K Y + Y Q ++A
Sbjct: 6 HHHHHSSGLVPRGSHMGDQNP-------LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKV 58
Query: 169 DYQKILELDPNNRDAY 184
+K LE+DP++ DA+
Sbjct: 59 PLRKALEIDPSSADAH 74
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 3e-15
Identities = 18/110 (16%), Positives = 29/110 (26%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A P+ V A+ S + L E + +
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQ-----VVAIASNSGGKQAL------ETVQRLLP 297
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 298 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 347
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 4e-15
Identities = 17/110 (15%), Positives = 28/110 (25%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A P+ V A+ + L E + +
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQ-----VVAIASNGGGKQAL------ETVQRLLP 229
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 230 VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 279
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 5e-15
Identities = 15/110 (13%), Positives = 26/110 (23%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P V A+ + L + + +
Sbjct: 351 DGGKQALETVQRLLPVLCQAHGLTPEQ-----VVAIASNGGGKQALETV------QRLLP 399
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 400 VLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 8e-15
Identities = 17/119 (14%), Positives = 29/119 (24%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
Q +++ L L +A P V A+ + L
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-----VVAIASHDGGKQAL----- 153
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E + +A L P + Q + + L + L P A
Sbjct: 154 -ETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 211
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-14
Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P+ V A+ + L E + +
Sbjct: 283 SGGKQALETVQRLLPVLCQAHGLTPQQ-----VVAIASNGGGKQAL------ETVQRLLP 331
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 332 VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAI 381
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-14
Identities = 15/112 (13%), Positives = 28/112 (25%), Gaps = 11/112 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A P V A+ + L + + +
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQ-----VVAIASHDGGKQALETV------QRLLP 433
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
+A L P + + + L+ L N+ +A
Sbjct: 434 VLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALA 485
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 3e-12
Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 9/127 (7%)
Query: 61 SQKLEQTAISLK---DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
+ +L + L A E++ + AL P + + + V A+
Sbjct: 23 AGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGK 82
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
+ L + + + +A L P + Q + + L + L
Sbjct: 83 QALETV------QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136
Query: 178 PNNRDAY 184
P A
Sbjct: 137 PEQVVAI 143
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 72.9 bits (178), Expect = 4e-15
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ L + + E+L Y EA+R P A Y+N L+++ + ++
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTF-----ADAYSNMGNTLKEM------QDVQGALQ 98
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
++AI +NP++ + A +++ S + EA+A Y+ L+L P+ DAY
Sbjct: 99 CYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 3e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
++++ KA+ + P + + A + QQ KL EAL Y++ + + P D
Sbjct: 19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78
Query: 183 AY 184
AY
Sbjct: 79 AY 80
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-14
Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 11/128 (8%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
Y F + + +EG + ++ + A++ P+ +
Sbjct: 53 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-----MEAWQYLGTT 107
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ E+ +I A + + L P A + +A + L
Sbjct: 108 QAEN------EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161
Query: 177 DPNNRDAY 184
P
Sbjct: 162 TPAYAHLV 169
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 6e-14
Identities = 17/111 (15%), Positives = 41/111 (36%), Gaps = 9/111 (8%)
Query: 74 EGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133
+L + + E + A+R P S + D+++
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDPTS---IDPDVQCGLGVLFNLS------GEYDKAV 237
Query: 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ A+++ P+ ++ + ++ +EA+A Y++ LEL P +
Sbjct: 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 288
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-13
Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G ++ +++ + AL P + + A L + ++++
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPND-----YLLWNKLGATLANG------NQSEEAVA 272
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A +A+ L P Y++ EA+ + + L + +R
Sbjct: 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 322
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 4e-13
Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 72 KDEGNALFRLNQWSE-SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
K + A L+ + + + A Y++ + + + E+ L
Sbjct: 29 KRDAEAHPWLSDYDDLTSATYDKGYQFEEEN-------PLRDHPQPFEEGLRRLQEGDLP 81
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++L A+ +P +++ +Q ++++ A++ ++ LEL P+N+ A
Sbjct: 82 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTAL 135
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 26/126 (20%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G Q +++ L P + + + Q+
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDN-----QTALMALAVSFTNE------SLQRQACE 153
Query: 135 ACSKAITLNPSYLKVYQRRARLY---------------QQSDKLDEALADYQKILELDPN 179
+ P+Y + E + + LDP
Sbjct: 154 ILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT 213
Query: 180 NRDAYV 185
+ D V
Sbjct: 214 SIDPDV 219
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-07
Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 30/133 (22%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
A+S++ G L NQ E++A Y AL P R+ N +
Sbjct: 241 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY---IRS--RYNLGISC 295
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY-----------QQSDKLDEA 166
L +++ +A+ + + + D
Sbjct: 296 INL------GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349
Query: 167 LADYQKILELDPN 179
A + L
Sbjct: 350 GAADARDLSTLLT 362
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-14
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 15/118 (12%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
AISL +EG W +L ++ R N Y L+
Sbjct: 6 AISLWNEGVLAADKKDWKGALDAFSAVQDPHSR--------ICFNIGCM------YTILK 51
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK-ILELDPNNRDAY 184
++ A +++I + Y +R LY Q++K D A+ D ++ +++L N Y
Sbjct: 52 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-09
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 27/126 (21%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L +E+ + ++ AV Y R Y EK D +I
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHL-----AVAYFQRGML------YYQTEKYDLAIK 92
Query: 135 ACSKAIT-LNPSYLKVYQR---------------RARLYQQSDKLDEALADYQKILELDP 178
+A+ L + L Y+ A +Y + ++ +A +
Sbjct: 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152
Query: 179 NNRDAY 184
R +
Sbjct: 153 EPRHSK 158
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 25/113 (22%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLA---------SYLS 125
G ++ ++ ++ EAL + + + Y + A Y
Sbjct: 78 GMLYYQTEKYDLAIKDLKEALIQLRGN----QLIDYKILGLQFKLFACEVLYNIAFMYAK 133
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDP 178
E+ ++ + A ++ + K+D+A+ K +P
Sbjct: 134 KEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 5e-14
Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 11/128 (8%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
Y F ++ + +EG + ++ A+ P A +
Sbjct: 54 YYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-----GDAEAWQFLGIT 108
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ E +I+A + + L P+ LK A Y + +A + ++
Sbjct: 109 QAEN------ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162
Query: 177 DPNNRDAY 184
+P +
Sbjct: 163 NPKYKYLV 170
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 6e-14
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 7/113 (6%)
Query: 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131
+ + + Q +++ + + + A E+ L
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYYFHT-------ENPFKDWPGAFEEGLKRLKEGDLPV 83
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+IL AI +P + +Q +++ A+ Q+ LEL PNN A
Sbjct: 84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKAL 136
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 8e-14
Identities = 15/110 (13%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G +++ ++ +N AL P + A L ++ ++++
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPED-----YSLWNRLGATLANG------DRSEEAVE 268
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
A ++A+ + P +++ EA++++ L L +R+
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ 318
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 9e-14
Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 9/114 (7%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
+ + + Y EA + + +
Sbjct: 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNG---DMIDPDLQTGLGVLFHLS------GEFN 230
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++I A + A+T+ P ++ R D+ +EA+ Y + LE+ P +
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-08
Identities = 12/121 (9%), Positives = 26/121 (21%), Gaps = 21/121 (17%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G ++ L P + + + +
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNN-----LKALMALAVSYTNT------SHQQDACE 154
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQ----------SDKLDEALADYQKILELDPNNRDAY 184
A I NP Y + + + S L+ Y + + + D
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214
Query: 185 V 185
+
Sbjct: 215 L 215
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 38/140 (27%)
Query: 66 QTAISLKDE--------GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
A++++ E G L ++ E++ Y AL P R+ N +
Sbjct: 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF---IRS--RYNLGISC 291
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSY--------------LKVYQRRARLYQQSDKL 163
L +Y +++ A++L + R A +L
Sbjct: 292 INLGAY------REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345
Query: 164 DEA-----LADYQKILELDP 178
+A L + LDP
Sbjct: 346 FQAANLGDLDVLLRAFNLDP 365
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 6/74 (8%), Positives = 16/74 (21%)
Query: 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
R + + + S + L +
Sbjct: 29 MARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFM 88
Query: 171 QKILELDPNNRDAY 184
+ + DP + +A+
Sbjct: 89 EAAILQDPGDAEAW 102
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 8e-14
Identities = 12/108 (11%), Positives = 41/108 (37%), Gaps = 13/108 (12%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G + ++ES+ + +A++ P + ++ + AL L E+ ++++
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEE-----SKYWLMKGKALYNL------ERYEEAVD 61
Query: 135 ACSKAITLNPSYLKV--YQRRARLYQQSDKLDEALADYQKILELDPNN 180
+ I + + +A + + + + +L+ ++
Sbjct: 62 CYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 1e-10
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
Y +SI KAI L+P K + + + ++ +EA+
Sbjct: 9 YYLEGVLQYDA------GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 170 YQKILELDPNNRDA 183
Y ++ + + +
Sbjct: 63 YNYVINVIEDEYNK 76
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + Y L + E++ ++K ++LDP +
Sbjct: 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW 43
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 2e-13
Identities = 17/122 (13%), Positives = 37/122 (30%), Gaps = 11/122 (9%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL 124
E T L G ++ +W ++ + A ++ A + L Y
Sbjct: 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGACRQSLGLY- 68
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+Q++ + S ++ + + A + Q LD A + + L
Sbjct: 69 -----EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123
Query: 185 VA 186
Sbjct: 124 AL 125
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 1e-06
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
L+ L+ Q+ K D+A +Q + LD + +
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYF 55
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-13
Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 11/117 (9%)
Query: 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144
+ L + + Y E+ D ++ A+ +P
Sbjct: 2 QAITERLEAMLAQGTDN-----MLLRFTLGKT------YAEHEQFDAALPHLRAALDFDP 50
Query: 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGA 201
+Y ++ + Q A ++ L + D V ++ L+ + A
Sbjct: 51 TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDA 107
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 7e-13
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 75 GNALFRLNQW---SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ 131
A +RL+ W ++ +A+R P + + L K+ E+ +
Sbjct: 179 AIASYRLDNWPPSQNAIDPLRQAIRLNPDN-----QYLKVLLALKLHKM--REEGEEEGE 231
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A+ P V + A+ Y++ D+ D+A+ +K LE PNN +
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 5e-10
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSV--SRAVFYANRSAALEKLASYLS------L 126
R ++ +++ +AL P + + Y + + L L
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLL 313
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
E ++ KA N + +V A L+ +D+ +EA +QK +
Sbjct: 314 ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 1e-08
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSR---AVFYANRSAALEKLASYLSLEKPDQ 131
+ + + S+ ++ C + S R K + ++
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKC----GGNQNER 156
Query: 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKL---DEALADYQKILELDPNNRDAYV 185
+ + KA+ P + A + D A+ ++ + L+P+N+ V
Sbjct: 157 AKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 6e-08
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 21/107 (19%)
Query: 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACS 137
L+++ +++ + E ++ +S L+K+A
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQKS------REKEKMKDKLQKIAK--------------- 420
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++ N + + A L + ++K+ +A D ++ LE A
Sbjct: 421 MRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 6e-07
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRS----CSVSRAVFYANRSAALEKLASYL----SL 126
Q +L +A + + V + N + + +
Sbjct: 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYV 117
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+K S + L + RL ++ + A ++K LE P N +
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 36/135 (26%)
Query: 75 GNALFRL----NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-YLSLEKP 129
L ++ + E EAL P + L A Y ++P
Sbjct: 216 ALKLHKMREEGEEEGEGEKLVEEALEKAP------------GVTDVLRSAAKFYRRKDEP 263
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQ-------------------SDKLDEALADY 170
D++I KA+ P+ ++ + Y+ + + A+A
Sbjct: 264 DKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHL 323
Query: 171 QKILELDPNNRDAYV 185
+K E + N
Sbjct: 324 KKADEANDNLFRVCS 338
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 1e-12
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 11/117 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+++ L L +A P V A+ + L E
Sbjct: 260 VVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ-----VVAIASHGGGKQAL------E 308
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A L P + Q + + L + L P+ A
Sbjct: 309 TVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 365
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 2e-12
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 11/117 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+++ L L +A P + V A+ + L +
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPP-----DQVVAIASNIGGKQALETV---- 276
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A L P + Q + + L + L P+ A
Sbjct: 277 --QRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAI 331
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 2e-12
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P ++ V A+ + L + + +
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTP-----AQVVAIASHDGGKQALETV------QRLLP 654
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L A
Sbjct: 655 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAI 704
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 5e-12
Identities = 16/110 (14%), Positives = 28/110 (25%), Gaps = 12/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A P ++ A+ +LE + +
Sbjct: 369 GGGKQALETVQRLLPVLCQAHGLTP------------DQVVAIASNGGKQALETVQRLLP 416
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 417 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAI 466
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 5e-12
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 16/145 (11%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+++ G L L +A P V A+ + L E
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ-----VVAIASHDGGKQAL------E 342
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187
+ + +A L P + Q + + L + L P+ A +
Sbjct: 343 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 402
Query: 188 KVSPDLKLKEK-----NGATKLSPD 207
L+ ++ A L+PD
Sbjct: 403 GGKQALETVQRLLPVLCQAHGLTPD 427
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 2e-11
Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+++ L L +A P V A+ + L
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ-----VVAIASHDGGKQAL----- 239
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E + + +A L P + Q + + L + L P+ A
Sbjct: 240 -ETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAI 297
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 2e-10
Identities = 14/110 (12%), Positives = 25/110 (22%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P V A+ + L + + +
Sbjct: 504 IGGKQALATVQRLLPVLCQAHGLTPDQ-----VVAIASNGGGKQALETV------QRLLP 552
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L A
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAI 602
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 2e-10
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L +A P + V A+ + L + + +
Sbjct: 640 DGGKQALETVQRLLPVLCQAHGLTP-----DQVVAIASNGGGKQALETV------QRLLP 688
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L + Q + + L + L P+ A
Sbjct: 689 VLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAI 738
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 4e-10
Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145
E++ AL P + + ++ V A+ + +LE + + +A L P+
Sbjct: 171 EAVHASRNALTGAPLNLTPAQVVAIASNNGG------KQALETVQRLLPVLCQAHGLTPA 224
Query: 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ Q + + L + L P+ A
Sbjct: 225 QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAI 263
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 5e-09
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G L L +A + V A+ + + L + + +
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQ-----EQVVAIASNNGGKQALETV------QRLLP 722
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + + L + L P A
Sbjct: 723 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAI 772
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-08
Identities = 15/119 (12%), Positives = 29/119 (24%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+++ G L L +A P V A+ + L +
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ-----VVAIASNGGGKQALETV-- 581
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A L + Q + + L + L P A
Sbjct: 582 ----QRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAI 636
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-08
Identities = 15/110 (13%), Positives = 25/110 (22%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L L + P V A+ + L + Q +
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQ-----VVAIASHDGGKQALETV------QQLLP 484
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+A L P + Q + L + L P+ A
Sbjct: 485 VLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 2e-07
Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 5/121 (4%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQS 132
D+ A+ ++L L + ++ ++ A+ +LE +
Sbjct: 869 DQVVAIASNIGGKQALETVQRLLPVLCQDHGLT-----LDQVVAIASNGGKQALETVQRL 923
Query: 133 ILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD 192
+ + L P + + Q + + L + L PN A +
Sbjct: 924 LPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIASNGGKQA 983
Query: 193 L 193
L
Sbjct: 984 L 984
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-06
Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 68 AISLK-DEGNALFRLNQWSESLAKYNEALRSCPRSCSVS--RAVFYANRSAALEKLASYL 124
A L ++ A+ N ++L L ++ ++ + V A+ + L +
Sbjct: 693 AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV- 751
Query: 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + +A L P+ + Q + + L + L A
Sbjct: 752 -----QRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAI 806
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 8e-06
Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 9/150 (6%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVS--RAVFYANRSAALEKLASYLSLEKPD 130
+ A+ ++L L ++ ++ + V A+ + L +
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETV------Q 854
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190
+ + + L P + Q + + L + L + A +
Sbjct: 855 RLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGK 914
Query: 191 PDLKLKEKNGATKLSPDVFLHPGQPQIQHN 220
L+ ++ L D L P Q +
Sbjct: 915 QALETVQRLLPV-LCQDHGLTPDQVVAIAS 943
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 5/118 (4%)
Query: 68 AISLK-DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL 126
A L + A+ ++L L + ++ A A + +L
Sbjct: 761 AHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT----LAQVVAIASNIGGKQAL 816
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E + + +A L + Q + + L + L P+ A
Sbjct: 817 ETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAI 874
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-12
Identities = 11/62 (17%), Positives = 29/62 (46%)
Query: 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
+L + +++ + + +P Y+ Y +LY++ D+ D+A+ Y + +E+
Sbjct: 17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76
Query: 183 AY 184
Sbjct: 77 QK 78
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-05
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+P A+ + + D ALA +++++E DP+ Y
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTY 44
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 6e-12
Identities = 14/77 (18%), Positives = 27/77 (35%)
Query: 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
Y +E+ S L L ++ LA P + ++ +++K A+
Sbjct: 14 YMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73
Query: 170 YQKILELDPNNRDAYVA 186
LDP + + A
Sbjct: 74 LNHARMLDPKDIAVHAA 90
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 3e-10
Identities = 24/124 (19%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 57 YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
Y F + + +EG ++ +L +E+ + + P R A
Sbjct: 6 YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEP------------EREEA 53
Query: 117 LEKL-ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175
L + EK +I+A + A L+P + V+ A + + ALA + L
Sbjct: 54 WRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113
Query: 176 LDPN 179
P
Sbjct: 114 SQPQ 117
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 58.6 bits (143), Expect = 8e-12
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
+ N A K D++I KA+ L+P+ + + Y + DEA+
Sbjct: 12 WYNLGNAYYKQ------GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 170 YQKILELDPNNRDAY 184
YQK LELDPNN +A
Sbjct: 66 YQKALELDPNNAEAK 80
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 142 LNPS-YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++P + + Y + DEA+ YQK LELDPNN +A+
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW 46
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 9e-12
Identities = 21/129 (16%), Positives = 45/129 (34%), Gaps = 20/129 (15%)
Query: 66 QTAISLKDE--------GNALF-RLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116
+ A+S+K + G L RLN+ +ES+A +++AL Y A
Sbjct: 66 RQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD----------PTYPTPYIA 115
Query: 117 LEKLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175
+ + +++ P + ++ AR + +L +A ++K
Sbjct: 116 NLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175
Query: 176 LDPNNRDAY 184
+
Sbjct: 176 RVEVLQADD 184
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-10
Identities = 12/64 (18%), Positives = 28/64 (43%)
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
Y+ + Q+ + A+ +P + RA +YQ D+A +++ L + P++
Sbjct: 16 MEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS 75
Query: 181 RDAY 184
+
Sbjct: 76 AEIN 79
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
++K Q + R + ++ A +AL+S P++ + + R+ +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN-----ELAWLVRAEIYQY- 54
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR-LYQQSDKLDEALADYQKILE--LD 177
L+ D++ + +A+++ P ++ L + ++ E++A + K L
Sbjct: 55 -----LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109
Query: 178 PNNRDAY 184
P A
Sbjct: 110 PTPYIAN 116
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 4e-11
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 10/103 (9%)
Query: 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141
+ ++L + E L S A + AL Y ++ + SKA+
Sbjct: 82 EEMEKTLQQMEEVLGSAQVE-----AQALMLKGKALNVTPDYS-----PEAEVLLSKAVK 131
Query: 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
L P ++ + + +Y + + A + L N
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ 174
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 1e-09
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP---DQ 131
G ++ + + ++ AL C V N S L +L + E
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKN------KVSLQNLSMVLRQLQTDSGDEHSRHVMD 197
Query: 132 SILACSKAITLNPSYLKVYQRRARLY--------QQSDKLDEALADYQKILELD---PNN 180
S+ A+ ++ + + Y Q +AL+ Y + ++D +N
Sbjct: 198 SVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257
Query: 181 RDAY 184
D +
Sbjct: 258 PDLH 261
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 3e-08
Identities = 14/119 (11%), Positives = 37/119 (31%), Gaps = 20/119 (16%)
Query: 75 GNALFRL-NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133
G AL + E+ ++A++ P + K +
Sbjct: 109 GKALNVTPDYSPEAEVLLSKAVKLEP-----ELVEAWNQLGEVYWKKGDV------TSAH 157
Query: 134 LACSKAITLNPSYLKVYQRRARLYQQ--------SDKLDEALADYQKILELDPNNRDAY 184
S A+T + + + L Q S + +++ + +++D + ++
Sbjct: 158 TCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW 216
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 4e-08
Identities = 11/120 (9%), Positives = 32/120 (26%), Gaps = 5/120 (4%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ + L K + R ++ S
Sbjct: 25 TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCF----RDSYFETHSVEDAGRKQQDV 80
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD-EALADYQKILELDPNNRDAY 184
E+ ++++ + + + + + + EA K ++L+P +A+
Sbjct: 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 27/168 (16%)
Query: 75 GNALFR--------LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL 126
GNA ++L+ Y +A + ++ S + NR+ +
Sbjct: 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA--SSNPDLHLNRATLHKYE------ 271
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
E +++ S+A L+P++ + QR +L + +L L K + +
Sbjct: 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLR 331
Query: 187 TKVSPDL------KLKEKNGATKLSPDVFLHPGQPQIQHNPETIHGGK 228
+ +L P L PG N T+ GK
Sbjct: 332 PAHLGPCGDGRYQSASGQKMTLELKPLSTLQPG-----VNSGTVVLGK 374
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 2e-10
Identities = 7/116 (6%), Positives = 30/116 (25%), Gaps = 11/116 (9%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
+ + + E+ + + + +A + +
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAIYQIKEQF------Q 87
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
Q+ + A L + + + +A ++ +++ + + A
Sbjct: 88 QAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA 143
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 4e-04
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + A + +++EA ++ + D N D
Sbjct: 27 DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 55.7 bits (133), Expect = 5e-10
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 12/128 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVS-------RAVFYANRSAALEKL 120
A + ++ E+ A A+ A +A + AL L
Sbjct: 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 70
Query: 121 ASY-LSLEKPDQSILACSKAITLNPS----YLKVYQRRARLYQQSDKLDEALADYQKILE 175
S+ +L D+++ ++ LN ++ RA + EA+ +++K++E
Sbjct: 71 RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130
Query: 176 LDPNNRDA 183
+ +
Sbjct: 131 MIEERKGE 138
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-09
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 6/110 (5%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ W L ++ L+ R+ SV + R + Y ++ +
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSV-----WNQRYFVISNTTGYNDRAVLEREVQ 261
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ I L P + + Q L + ++L+L P++ Y
Sbjct: 262 YTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPY 310
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 6e-09
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 12/111 (10%)
Query: 75 GNALFRLNQ-WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133
L L + E + + P++ V + +R +E L P Q +
Sbjct: 138 RVLLKSLQKDLHEEMNYITAIIEEQPKNYQV-----WHHRRVLVEWL------RDPSQEL 186
Query: 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ + + +Q R + Q+ D L ++L+ D N +
Sbjct: 187 EFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 7e-08
Identities = 14/116 (12%), Positives = 40/116 (34%), Gaps = 17/116 (14%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ L S+ L + L ++ + +R +++ + D +
Sbjct: 173 RVLVEWLRDPSQELEFIADILNQDAKN-----YHAWQHRQWVIQEF------KLWDNELQ 221
Query: 135 ACSKAITLNPSYLKVYQRRARL------YQQSDKLDEALADYQKILELDPNNRDAY 184
+ + + V+ +R + Y L+ + ++++L P+N A+
Sbjct: 222 YVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW 277
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 119 KLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK-LDEALADYQKILELD 177
A E+ +++ AI LN + V+ R L + K L E + I+E
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162
Query: 178 PNNRDAY 184
P N +
Sbjct: 163 PKNYQVW 169
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 2e-09
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
S L K D+S A + I L S+L Y ++Y+ EA Y L P
Sbjct: 286 SALVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344
Query: 182 DAYVA 186
Y
Sbjct: 345 TLYWI 349
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 1e-04
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILA--CSKA 139
+ + E ++S P A ++ S L++ + L
Sbjct: 213 KSLNRASELLGEIVQSSPEF-----TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267
Query: 140 ITLNPSYL--KVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+TL +YQ +A K DE+ ++L+ +
Sbjct: 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 2e-09
Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 11/114 (9%)
Query: 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129
L ++ + ++ + + F+ A + + +
Sbjct: 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRFFLGLGACRQAM------GQY 71
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
D +I + S ++ + A Q +L EA + EL N +
Sbjct: 72 DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-06
Identities = 6/63 (9%), Positives = 15/63 (23%)
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+ + + L+ + + Q + D A+ Y +D
Sbjct: 30 NQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89
Query: 182 DAY 184
Sbjct: 90 RFP 92
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 1e-04
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++ L+ A QS ++A +Q + LD + +
Sbjct: 12 MLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFF 58
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-09
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNP-SYLKVYQRRARLYQQSDKLDEALADYQKILE 175
L+ + ++ + ++ A + + P + Y Y++ +AL +YQ +E
Sbjct: 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63
Query: 176 LDPNNRDAY 184
L+P++
Sbjct: 64 LNPDSPALQ 72
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-06
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 18/100 (18%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQS 132
L +L E L++ P Y A K L ++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGK----DEAYYLMGNAYRK------LGDWQKA 54
Query: 133 ILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172
+ AI LNP + R+ + + L Y K
Sbjct: 55 LNNYQSAIELNPDSPALQARK--------MVMDILNFYNK 86
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-08
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
G N +S SL Y +AL+ + + YA + L AS Q+
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAEL-----YAALATVLYYQASQ---HMTAQTRA 102
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ L+ + + A +A+ +QK+++L+ +
Sbjct: 103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-08
Identities = 16/76 (21%), Positives = 29/76 (38%)
Query: 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170
A + L + S + P+ + A I NP + + Y + +L Y
Sbjct: 8 AEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAY 67
Query: 171 QKILELDPNNRDAYVA 186
++ L+L N + Y A
Sbjct: 68 RQALQLRGENAELYAA 83
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 1e-06
Identities = 26/215 (12%), Positives = 61/215 (28%), Gaps = 59/215 (27%)
Query: 40 QFERQVFYI---------------QFIFHVLFYLFC-----SQKLEQTAISLKDEGNALF 79
+ + ++F++ Q + + + + S ++ S++ E L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 80 RLNQWSESL-----AKYNEALR----SCP-----RSCSVSRAVFYANRS----------- 114
+ + L + +A SC R V+ + A +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 115 ---AALEKLASYLSLEKPDQSILACS---KAITLNPSYLKVYQRRARLYQQ--SDKLDEA 166
L YL D + + +++ ++ ++ DKL
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 167 LADYQKILE-LDPNN-RDAYVATKVSP-DLKLKEK 198
+ + L L+P R + V P +
Sbjct: 359 I---ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-05
Identities = 39/216 (18%), Positives = 64/216 (29%), Gaps = 56/216 (25%)
Query: 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQF-ERQVFYIQFIFHVLFYLFCSQK 63
P + E + PS + +Y + D F + V +Q K
Sbjct: 97 PIKTE-QRQPSMMTRMYIEQ------RDRLYNDNQVFAKYNVSRLQPY----------LK 139
Query: 64 LEQTAISLKDEGNALFRLN-------QWSESLAKYNEALRSCPRSCSVSRAVFYAN---- 112
L Q + L+ N L ++ W +A + S C + +F+ N
Sbjct: 140 LRQALLELRPAKNVL--IDGVLGSGKTW---VA--LDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 113 --RSAALEKLAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRR---ARLYQQS-DKLD- 164
LE L ++ S S I L ++ RR ++ Y+ L
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 165 -------EALADYQ-KILELDPNNRDAYVATKVSPD 192
A + KIL R V +S
Sbjct: 253 VQNAKAWNAF-NLSCKILLT---TRFKQVTDFLSAA 284
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-06
Identities = 10/102 (9%), Positives = 38/102 (37%), Gaps = 8/102 (7%)
Query: 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140
L ++++ Y +A+ S + ++ Y + + +L + ++ + +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAEC--YLGLGST------FRTLGEYRKAEAVLANGV 54
Query: 141 TLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
P++ + A + + ++ + KI+ ++
Sbjct: 55 KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-05
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 126 LEKPDQSILACSKAITLN---PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
L Q++ KAI + Y ++ + +A A ++ PN++
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 183 AYV 185
V
Sbjct: 63 LRV 65
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-06
Identities = 13/112 (11%), Positives = 35/112 (31%), Gaps = 9/112 (8%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
L +L++ + + + + A + + +A EKL +
Sbjct: 137 VQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKL---------QDAYY 187
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186
+ L + +A + + + A Q+ L+ D + + +
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 3e-04
Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASY 123
L++ S E A+ ++ S ++ + + R +SR+V N + L + Y
Sbjct: 54 LDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDRE--MSRSVDVTNTTFLLMAASIY 111
Query: 124 LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183
+ PD ++ + +L + V + + D+LD A + +K+ + D +
Sbjct: 112 FYDQNPDAALRTLHQGDSLECMAMTVQ-----ILLKLDRLDLARKELKKMQDQDEDATLT 166
Query: 184 YVA 186
+A
Sbjct: 167 QLA 169
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 39.0 bits (90), Expect = 7e-04
Identities = 9/106 (8%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 76 NALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILA 135
+ + ++ + E C + + ++A +++ + + +
Sbjct: 174 SLAAGGEKLQDAYYIFQEMADKCSPT-----LLLLNGQAAC------HMAQGRWEAAEGV 222
Query: 136 CSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY-QKILELDPNN 180
+A+ + + + L Q K E Y ++ + ++
Sbjct: 223 LQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 8e-06
Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 12/121 (9%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
A + + G L L + E++ +A + + A + AL++ +
Sbjct: 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA------AMALDRAGKLMEPL 129
Query: 128 KPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+++ +A + ++ + +RL + K DEA A QK +
Sbjct: 130 DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189
Query: 182 D 182
+
Sbjct: 190 N 190
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 3e-04
Identities = 15/126 (11%), Positives = 39/126 (30%), Gaps = 11/126 (8%)
Query: 58 LFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAAL 117
++ TA D L S+++ Y +A + +A +++ L
Sbjct: 105 MYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL 164
Query: 118 EKLASYLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALADYQ 171
+ +K D++ + K ++ P+ K + + A +
Sbjct: 165 -----LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219
Query: 172 KILELD 177
+ +
Sbjct: 220 ESYSIP 225
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 4e-05
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 20/123 (16%)
Query: 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL----SLEK 128
D R+ + + +S P A L +L+ + + +
Sbjct: 7 DTETEFDRILLFEQIRQDAENTYKSNPLD-----ADNLTRWGGVLLELSQFHSISDAKQM 61
Query: 129 PDQSILACSKAITLNPSYLK-------VYQRRARLYQQSDK----LDEALADYQKILELD 177
++I +A+ ++P + Y A L + D A +Q+ ++
Sbjct: 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
Query: 178 PNN 180
P+N
Sbjct: 122 PDN 124
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 2e-04
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 15/119 (12%)
Query: 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-Y 123
E + + L EG L + ++ + A++ SA +L + Y
Sbjct: 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTED--------LKTLSAIYSQLGNAY 57
Query: 124 LSLEKPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L +++ +TL K + DEA+ Q+ L++
Sbjct: 58 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.94 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.93 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.93 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.93 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.91 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.91 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.91 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.91 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.9 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.9 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.89 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.89 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.89 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.88 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.88 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.87 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.86 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.86 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.86 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.85 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.85 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.85 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.85 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.85 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.83 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.83 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.83 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.83 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.83 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.82 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.82 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.82 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.82 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.82 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.81 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.81 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.81 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.81 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.81 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.81 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.81 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.81 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.8 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.8 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.79 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.78 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.78 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.77 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.77 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.77 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.77 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.76 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.76 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.76 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.76 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.76 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.76 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.75 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.75 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.74 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.74 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.73 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.73 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.72 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.72 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.72 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.71 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.71 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.71 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.71 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.71 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.7 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.7 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.7 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.7 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.7 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.69 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.69 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.68 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.68 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.68 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.68 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.68 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.67 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.66 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.66 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.66 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.66 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.66 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.66 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.66 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.66 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.65 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.65 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.64 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.64 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.63 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.62 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.62 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.62 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.61 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.6 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.59 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.58 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.58 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.57 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.55 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.54 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.53 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.52 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.52 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.49 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.48 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.47 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.47 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.46 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.46 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.46 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.44 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.41 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.41 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.4 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.36 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.34 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.34 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.23 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.18 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 99.12 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.08 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.08 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.06 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.06 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 99.04 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.04 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.04 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.03 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.01 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.0 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.98 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.88 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.83 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.8 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.79 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.69 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.55 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.47 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.38 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.35 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.22 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 98.02 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.01 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.97 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.91 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.85 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.85 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.69 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.61 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 97.01 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.01 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.89 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.82 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.77 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.65 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.62 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 96.53 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 96.46 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 95.43 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 95.38 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.95 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.87 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 94.73 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.65 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 94.54 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 94.43 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.87 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.6 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 93.58 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 93.18 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 92.66 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 91.82 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.78 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.58 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 90.02 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.41 | |
| 3ax2_A | 73 | Mitochondrial import receptor subunit TOM20 homol; | 86.78 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 84.91 | |
| 3t5x_A | 203 | PCI domain-containing protein 2; PCI, mRNA nuclear | 82.03 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.21 | |
| 2w2u_A | 83 | Hypothetical P60 katanin; hydrolase transport comp | 80.12 |
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=174.37 Aligned_cols=175 Identities=22% Similarity=0.233 Sum_probs=155.1
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc---
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL--- 81 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--- 81 (229)
.|+++++.+|+++.+++.+|.++... |++++|...+++++ ...|.++.++..+|.++...
T Consensus 27 ~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al----------------~~~P~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 27 LFERALKENPQDPEALYWLARTQLKL-GLVNPALENGKTLV----------------ARTPRYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCcHHHHHHHHHHHHHhhhh
Confidence 57889999999999999999999999 99999999999998 57788999999999999999
Q ss_pred --------cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHH
Q psy13014 82 --------NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRR 153 (229)
Q Consensus 82 --------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 153 (229)
|++++|+..|+++++++|++ +.++.++|.+ +..+|++++|+..|+++++++ +++.+++++
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~al~~~P~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 90 AEDRERGKGYLEQALSVLKDAERVNPRY-----APLHLQRGLV------YALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred hhhhcccccCHHHHHHHHHHHHHhCccc-----HHHHHHHHHH------HHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 99999999999999999999 9999999999 999999999999999999999 999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 154 ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 154 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
|.++..+|++++|+..|+++++++|+++.++.+++.++ ...++..+|+..+.++-
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL-LLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998 88899999998887654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-26 Score=172.09 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=166.4
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|+++.+++.+|.++... |++++|...|++++ ...|.++.+++.+|.++...|++++|+..|++
T Consensus 2 p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 64 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYAL-GRYDAALTLFERAL----------------KENPQDPEALYWLARTQLKLGLVNPALENGKT 64 (217)
T ss_dssp --CCHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78889999999999999 99999999999988 67899999999999999999999999999999
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc-----------CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSL-----------EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
+++++|++ +.++.++|.+ +... |++++|+..++++++++|+++.+++.+|.++...|+
T Consensus 65 al~~~P~~-----~~a~~~lg~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 65 LVARTPRY-----LGGYMVLSEA------YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHCTTC-----HHHHHHHHHH------HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhCCCc-----HHHHHHHHHH------HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 99999999 9999999999 9999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
+++|+..|+++++++ +++.++.++|.++ ...+++.+|+..+.+++ ++|++....
T Consensus 134 ~~~A~~~~~~al~~~-~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~P~~~~~~ 188 (217)
T 2pl2_A 134 RDKAEASLKQALALE-DTPEIRSALAELY-LSMGRLDEALAQYAKALEQAPKDLDLR 188 (217)
T ss_dssp HHHHHHHHHHHHHHC-CCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHHhcc-cchHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999 9999999999999 89999999999999999 999876543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=165.20 Aligned_cols=173 Identities=14% Similarity=0.145 Sum_probs=165.5
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
++..+++.+|.++... |++++|+..|++++ ...|+++.++..+|.++...|++++|+..+.++
T Consensus 3 e~~~iy~~lG~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTK-GDFDGAIRAYKKVL----------------KADPNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp -CHHHHHHHHHHHHHH-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5677899999999999 99999999999998 677899999999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
+...|.+ +.++..+|.+ +...++++.|+..+.+++.++|++..++..+|.++..+|++++|+..|++++
T Consensus 66 ~~~~~~~-----~~~~~~~~~~------~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 66 VVLDTTS-----AEAYYILGSA------NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp HHHCCCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCchh-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 9999999 9999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 175 ELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 175 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+++|+++.++.++|.++ .+++++.+|++.|.+++ ++|++..
T Consensus 135 ~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 135 SIKPGFIRAYQSIGLAY-EGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HhcchhhhHHHHHHHHH-HHCCCHHHHHHHHHHHHhCCccCHH
Confidence 99999999999999999 89999999999999999 9997644
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-25 Score=196.36 Aligned_cols=175 Identities=18% Similarity=0.256 Sum_probs=166.3
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
..|+++.++..+|.++... |++++|+..|++++ ...|+++.++.++|.++..+|++++|+..|
T Consensus 4 s~P~~a~al~nLG~~~~~~-G~~~eAi~~~~kAl----------------~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~ 66 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQ-GNIEEAVRLYRKAL----------------EVFPEFAAAHSNLASVLQQQGKLQEALMHY 66 (723)
T ss_dssp --CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4799999999999999999 99999999999998 677889999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q psy13014 92 NEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 92 ~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
+++++++|++ +.++.++|.+ +..+|++++|++.|+++++++|+++.+++++|.++..+|++++|+..|+
T Consensus 67 ~~Al~l~P~~-----~~a~~nLg~~------l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 67 KEAIRISPTF-----ADAYSNMGNT------LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp HHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999 9999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 172 KILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 172 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
++++++|++..++.+++.++ ..++++.+|.+.+.+++ +.|+..
T Consensus 136 ~Al~l~P~~~~a~~~L~~~l-~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 136 TALKLKPDFPDAYCNLAHCL-QIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp HHHHHCSCCHHHHHHHHHHH-HHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHhhhhhHH-HhcccHHHHHHHHHHHHHhChhHH
Confidence 99999999999999999999 89999999999999888 777443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-25 Score=181.39 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=169.2
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC-HHH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ-WSE 86 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~ 86 (229)
.++..+|++..++..+|.++... |++++|+..+++++ ...|.+..+|+.+|.++..+|+ +++
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~-g~~~~Al~~~~~al----------------~l~P~~~~a~~~~g~~l~~~g~d~~e 150 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRD-ERSERAFKLTRDAI----------------ELNAANYTVWHFRRVLLKSLQKDLHE 150 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred hhhhCChhhHHHHHHHHHHHHHC-CChHHHHHHHHHHH----------------HhCccCHHHHHHHHHHHHHcccCHHH
Confidence 47899999999999999999999 99999999999998 6789999999999999999997 999
Q ss_pred HHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 87 SLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 87 A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
|+..|++++.++|++ ..+|+++|.+ +..+|++++|+.+|++++.++|++..+|+++|.++..+|++++|
T Consensus 151 Al~~~~~al~l~P~~-----~~a~~~~g~~------~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 151 EMNYITAIIEEQPKN-----YQVWHHRRVL------VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence 999999999999999 9999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHhccCchHH-Hhhhhhc-----cccccccc-ccCCCcccc
Q psy13014 167 LADYQKILELDPNNRDAYVATKVSPDLK-LKEKNGA-----TKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 167 ~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~~a-----~~~~~~~~-~~p~~~~~~ 218 (229)
+.+|+++++++|++..+|.+++.++ .. .+...+| +..+.+++ ++|++....
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l-~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~ 277 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVI-SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAW 277 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999998 56 3433666 58899999 999876543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-24 Score=156.36 Aligned_cols=157 Identities=19% Similarity=0.233 Sum_probs=147.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++++|+++.+++.+|.++... |+++++...+.+++ ...+..+.++..+|.++...+++
T Consensus 27 ~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~a~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 89 (184)
T 3vtx_A 27 AYKKVLKADPNNVETLLKLGKTYMDI-GLPNDAIESLKKFV----------------VLDTTSAEAYYILGSANFMIDEK 89 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------hcCchhHHHHHHHHHHHHHcCCH
Confidence 58899999999999999999999999 99999999998887 56677888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
+.|+..+.+++..+|.+ ..++..+|.+ +..+|++++|+..|+++++++|+++.+++++|.++..+|+++
T Consensus 90 ~~a~~~~~~a~~~~~~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 90 QAAIDALQRAIALNTVY-----ADAYYKLGLV------YDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccc-----hHHHHHHHHH------HHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+|+..|+++++++|+++ .++++.+.
T Consensus 159 ~A~~~~~~al~~~p~~a--~~~lali~ 183 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA--KYELALVP 183 (184)
T ss_dssp HHHHHHHHHHHTTHHHH--HHCSCCSC
T ss_pred HHHHHHHHHHhCCccCH--HHHHHhhC
Confidence 99999999999999764 56777654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-24 Score=163.25 Aligned_cols=177 Identities=14% Similarity=0.200 Sum_probs=161.2
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLE-QTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
.|.++..++..|.+++.. |++++|...|++++ ...| .+..+++.+|.++...|++++|+..|
T Consensus 3 ~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al----------------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 65 (228)
T 4i17_A 3 QTTDPNQLKNEGNDALNA-KNYAVAFEKYSEYL----------------KLTNNQDSVTAYNCGVCADNIKKYKEAADYF 65 (228)
T ss_dssp -CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHc-cCHHHHHHHHHHHH----------------hccCCCCcHHHHHHHHHHHHhhcHHHHHHHH
Confidence 456779999999999999 99999999999988 3444 66678888999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHhcccHH
Q psy13014 92 NEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL-------KVYQRRARLYQQSDKLD 164 (229)
Q Consensus 92 ~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~ 164 (229)
++++..+|.+ ..++..+|.+ +..+|++++|+..++++++++|+++ .+++.+|.++...|+++
T Consensus 66 ~~al~~~p~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 134 (228)
T 4i17_A 66 DIAIKKNYNL-----ANAYIGKSAA------YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIE 134 (228)
T ss_dssp HHHHHTTCSH-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCcch-----HHHHHHHHHH------HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHH
Confidence 9999999998 9999999999 9999999999999999999999998 67999999999999999
Q ss_pred HHHHHHHHHHHhCCC--cHHHHHHhccCchHHHhhh---------------------------hhccccccccc-ccCCC
Q psy13014 165 EALADYQKILELDPN--NRDAYVATKVSPDLKLKEK---------------------------NGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 165 ~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~---------------------------~~a~~~~~~~~-~~p~~ 214 (229)
+|+..|+++++++|+ +..++.++|.++ ...++. .+|+..+.+++ ++|++
T Consensus 135 ~A~~~~~~al~~~p~~~~~~~~~~l~~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 135 KAEENYKHATDVTSKKWKTDALYSLGVLF-YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999 999999999998 555555 88999999999 99987
Q ss_pred cccc
Q psy13014 215 PQIQ 218 (229)
Q Consensus 215 ~~~~ 218 (229)
..+.
T Consensus 214 ~~~~ 217 (228)
T 4i17_A 214 TEIK 217 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-24 Score=177.44 Aligned_cols=181 Identities=11% Similarity=0.051 Sum_probs=162.1
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSE-IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
.|+++++++|++..+++.+|.++..+ |+ +++|+..|++++ ...|+++.+|+.+|.++..+|+
T Consensus 119 ~~~~al~l~P~~~~a~~~~g~~l~~~-g~d~~eAl~~~~~al----------------~l~P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 119 LTRDAIELNAANYTVWHFRRVLLKSL-QKDLHEEMNYITAII----------------EEQPKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCccCHHHHHHHHHHHHHc-ccCHHHHHHHHHHHH----------------HHCCCCHHHHHHHHHHHHHccC
Confidence 47889999999999999999999999 97 999999999998 6788999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh-ccc
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ-SDK 162 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~ 162 (229)
+++|+.+|++++.++|.+ ..+|.++|.+ +..+|++++|+.+|+++++++|++..+|+++|.++.. .|.
T Consensus 182 ~~eAl~~~~kal~ldP~~-----~~a~~~lg~~------~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 182 PSQELEFIADILNQDAKN-----YHAWQHRQWV------IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp CTTHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhCccC-----HHHHHHHHHH------HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999 9999999999 9999999999999999999999999999999999999 555
Q ss_pred HHHH-----HHHHHHHHHhCCCcHHHHHHhccCchHHHh--hhhhcccccccccccCCC
Q psy13014 163 LDEA-----LADYQKILELDPNNRDAYVATKVSPDLKLK--EKNGATKLSPDVFLHPGQ 214 (229)
Q Consensus 163 ~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~~a~~~~~~~~~~p~~ 214 (229)
+++| +.+|++++.++|++..+|.+++.++ ...+ ++.+++..+.++-.+|++
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll-~~~g~~~~~~a~~~~~~~~~~p~~ 308 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSS 308 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTCCC
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HccCccchHHHHHHHHHhccCCCC
Confidence 5777 5999999999999999999999887 4443 466666655544244433
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-23 Score=144.04 Aligned_cols=118 Identities=25% Similarity=0.456 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.+|+.+..+..+|..+++.|+|++|+..|+++++++|.+ +.+|.++|.+ +..+|++++|+..|++++++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~------~~~~~~~~~A~~~~~~al~~ 76 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN-----AILYSNRAAC------LTKLMEFQRALDDCDTCIRL 76 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHhhH------HHhhccHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+|+++.+|+++|.++..+|++++|+..|+++++++|+++.++..++.++
T Consensus 77 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=151.51 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=128.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Q psy13014 23 SCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC 102 (229)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 102 (229)
+|.++... |+++.|+..+.+++ ...|+.+..++.+|.+|+..|+|++|+.+|+++++++|++
T Consensus 3 LG~~~~~~-~~~e~ai~~~~~a~----------------~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~- 64 (150)
T 4ga2_A 3 LGSMRRSK-ADVERYIASVQGST----------------PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD- 64 (150)
T ss_dssp ----CCCH-HHHHHHHHHHHHHS----------------CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred hHHHHHHc-ChHHHHHHHHHHhc----------------ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Confidence 56666777 89999999888877 6789999999999999999999999999999999999999
Q ss_pred chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHH-HHHHHHhCCCcH
Q psy13014 103 SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD-YQKILELDPNNR 181 (229)
Q Consensus 103 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~-~~~al~~~p~~~ 181 (229)
+.+|.++|.+ +..+|++++|+.+|+++++++|+++.+++++|.++...|++++|... ++++++++|+++
T Consensus 65 ----~~a~~~lg~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 65 ----PKAHRFLGLL------YELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp ----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred ----HHHHHHHHHH------HHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 9999999999 99999999999999999999999999999999999999999887766 599999999999
Q ss_pred HHHHHhccCc
Q psy13014 182 DAYVATKVSP 191 (229)
Q Consensus 182 ~~~~~l~~~~ 191 (229)
.++..++.++
T Consensus 135 ~~~~l~~~ll 144 (150)
T 4ga2_A 135 AVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888776
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=157.85 Aligned_cols=186 Identities=16% Similarity=0.221 Sum_probs=175.1
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
-.|+++++.+|++..+++.+|.++... |++++|...+++++ ...|..+.++..+|.++...|+
T Consensus 44 ~~~~~~l~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 44 EAFTKAIEENKEDAIPYINFANLLSSV-NELERALAFYDKAL----------------ELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp TTHHHHHTTCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HcCCcchHHHHHHHHHHHHhcc
Confidence 457889999999999999999999999 99999999999887 4556778899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 163 (229)
+++|+..+++++...|.+ ..++..+|.+ +...|++++|+..++++++..|+++.++..+|.++...|++
T Consensus 107 ~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 107 YKEAKDMFEKALRAGMEN-----GDLFYMLGTV------LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHHHHHHHHHTCCS-----HHHHHHHHHH------HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 999999999999999998 9999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 164 DEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 164 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
++|+..++++++.+|++..++..++.++ ...++..+|++.+.+++ ++|++....
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTY-AYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHH-HHccCHHHHHHHHHHHHccCcchHHHH
Confidence 9999999999999999999999999999 88999999999999999 999776544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=169.09 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=156.9
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-------HH-----------hhhhhhhHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHV-------LF-----------YLFCSQKLEQ 66 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~-----------~~~~~~~~~~ 66 (229)
.|+++++.+|++..++..+|.++... |++++|...|++++...+..... .. +.......|.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 157 CYLKAIETQPNFAVAWSNLGCVFNAQ-GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 36778888888888888888888888 88888888887776431110000 00 1112234566
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
++.++..+|.++...|++++|+..|++++..+|.+ +.++.++|.+ +...|++++|+..|+++++++|++
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-----PDAYCNLANA------LKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC-----HHHHHHHHHH------HHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCccc
Confidence 67788888888888888888888888888888888 8888888888 888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
+.++..+|.++...|++++|+..|+++++++|++..++..++.++ .+.+++.+|+..+.+++ ++|++...
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH-HTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 888888888888888888888888888888888888888888888 77888888888888888 88866543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.7e-23 Score=167.63 Aligned_cols=197 Identities=17% Similarity=0.205 Sum_probs=123.9
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-------HHH----------HHH-hhhhhhhHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQF-------IFH----------VLF-YLFCSQKLEQ 66 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~----------~~~-~~~~~~~~~~ 66 (229)
.|+++++.+|++..++..+|.++... |++++|...|++.+...+. ... ... +.......|.
T Consensus 89 ~~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 167 (388)
T 1w3b_A 89 HYRHALRLKPDFIDGYINLAAALVAA-GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 36677777777777777777777777 7777777777665532110 000 000 1112233455
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+.++..+|.++...|++++|+..|++++.++|++ ..++..+|.+ +...|++++|+..+++++.++|++
T Consensus 168 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF-----LDAYINLGNV------LKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCcCC
Confidence 56677777777777777777777777777777776 6666666666 666666666666666666666666
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+.++..+|.++...|++++|+..|+++++++|+++.++..++.++ .+.+++.+|+..+.+++ ++|.+
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-KEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCccc
Confidence 666666666666666666666666666666666666666666665 55566666666666665 55544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=157.03 Aligned_cols=189 Identities=17% Similarity=0.179 Sum_probs=163.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+ +++.+++.+|.++... |++++|...+++++...+.. ....+..+.++..+|.++...|++
T Consensus 27 ~~~~a~~~~-~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 27 HYNKAWELH-KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREM---------RADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp HHHHHHHHS-CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhh-ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCccc---------ccchHHHHHHHHHHHHHHHHcccH
Confidence 367788888 8889999999999999 99999999998887322100 011223378999999999999999
Q ss_pred HHHHHHHHHHHHhCCCC---------------------CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 85 SESLAKYNEALRSCPRS---------------------CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~---------------------~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
++|+..|++++.+.|.. .....+.++..+|.+ +...|++++|+..+++++..+
T Consensus 96 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a~~~~ 169 (258)
T 3uq3_A 96 KKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKE------YFTKSDWPNAVKAYTEMIKRA 169 (258)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHH------HHHhcCHHHHHHHHHHHHhcC
Confidence 99999999999954431 011237889999999 999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-cc
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LH 211 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~ 211 (229)
|.++.++..+|.++...|++++|+..++++++.+|+++.++..++.++ ...++..+|+..+.+++ ++
T Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 170 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ-IAVKEYASALETLDAARTKD 237 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999 89999999999999999 88
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=160.89 Aligned_cols=183 Identities=11% Similarity=0.028 Sum_probs=152.3
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++++.+|+++.+++.+|.++... |++++|...+++++ ...|.....+..+|.++...|+++
T Consensus 114 ~~~a~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~----------------~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 114 LSKATTLEKTYGPAWIAYGHSFAVE-SEHDQAMAAYFTAA----------------QLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHH-TCHHHHHHHHHHHH----------------HHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHc-cCHHHHHHHHHHHH----------------HhccccHHHHHHHHHHHHHHhhHH
Confidence 3444444444444444444444444 44444444444443 344566678888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC---------CCcHHHHHHHHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN---------PSYLKVYQRRARL 156 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~ 156 (229)
+|+..+++++..+|.+ +.++..+|.+ +...|++++|+..+++++... |..+.++..+|.+
T Consensus 177 ~A~~~~~~al~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 177 LAERFFSQALSIAPED-----PFVMHEVGVV------AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHHHHHHTTCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC-----hHHHHHHHHH------HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 9999999999999999 9999999999 999999999999999999986 7778899999999
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 157 YQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 157 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
+...|++++|+..++++++++|++..++..++.++ ...+++.+|++.+.+++ ++|++...
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIH-SLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHH-HHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHH-HHhccHHHHHHHHHHHHccCCCchHH
Confidence 99999999999999999999999999999999999 89999999999999999 99976543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-23 Score=166.45 Aligned_cols=199 Identities=12% Similarity=0.062 Sum_probs=157.1
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-------HH-----------hhhhhhhHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHV-------LF-----------YLFCSQKLEQ 66 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~-----------~~~~~~~~~~ 66 (229)
.|+++++.+|++..+++.+|.++... |++++|...|++++...+..... .. +.......|.
T Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 165 (365)
T 4eqf_A 87 FMEAAILQDPGDAEAWQFLGITQAEN-ENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHhCcCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCcc
Confidence 36677777888888888888888777 88888888777766431110000 00 0011233444
Q ss_pred HHHHHH----------HHHHHHHHccCHHHHHHHHHHHHHhCCC--CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHH
Q psy13014 67 TAISLK----------DEGNALFRLNQWSESLAKYNEALRSCPR--SCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134 (229)
Q Consensus 67 ~~~~~~----------~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~ 134 (229)
....+. .+|.++...|++++|+..|++++..+|. + +.++..+|.+ +...|++++|+.
T Consensus 166 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~~l~~~------~~~~g~~~~A~~ 234 (365)
T 4eqf_A 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID-----PDLQTGLGVL------FHLSGEFNRAID 234 (365)
T ss_dssp HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC-----HHHHHHHHHH------HHHHTCHHHHHH
T ss_pred chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-----HHHHHHHHHH------HHHCCCHHHHHH
Confidence 444444 4499999999999999999999999999 7 9999999999 999999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 135 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
.|+++++++|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++ ...+++.+|+..+.+++ +.|+
T Consensus 235 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 235 AFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC-INLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999999999999 89999999999999999 8886
Q ss_pred Ccc
Q psy13014 214 QPQ 216 (229)
Q Consensus 214 ~~~ 216 (229)
...
T Consensus 314 ~~~ 316 (365)
T 4eqf_A 314 SRN 316 (365)
T ss_dssp C--
T ss_pred cCC
Confidence 543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=171.81 Aligned_cols=175 Identities=15% Similarity=0.132 Sum_probs=162.3
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc---
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL--- 81 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--- 81 (229)
.|+++++.+|+++.+++.+|.++... |++++|...|++++ ...|+ +.++..+|.++...
T Consensus 125 ~~~~al~~~p~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al----------------~~~p~-~~~~~~lg~~~~~~~~~ 186 (474)
T 4abn_A 125 LLSKAVKLEPELVEAWNQLGEVYWKK-GDVTSAHTCFSGAL----------------THCKN-KVSLQNLSMVLRQLQTD 186 (474)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHH----------------TTCCC-HHHHHHHHHHHTTCCCS
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hhCCC-HHHHHHHHHHHHHhccC
Confidence 47888999999999999999999999 99999999998887 44455 58999999999999
Q ss_pred ------cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc--------CChHHHHHHHHHHHhcCC---
Q psy13014 82 ------NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL--------EKPDQSILACSKAITLNP--- 144 (229)
Q Consensus 82 ------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~--------~~~~~A~~~~~~al~~~p--- 144 (229)
|++++|+..|++++.++|++ +.+|.++|.+ +..+ |++++|+.+|+++++++|
T Consensus 187 ~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 187 SGDEHSRHVMDSVRQAKLAVQMDVLD-----GRSWYILGNA------YLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ChhhhhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999 9999999999 9888 999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+++.+++++|.++...|++++|+..|+++++++|++..++..++.++ ..+++..+|++.++++.
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~-~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL-EFLSRLTSLLESKGKTK 319 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHHHHHHHHHHTTTCC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999998 88888888887776653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.5e-22 Score=150.79 Aligned_cols=159 Identities=13% Similarity=0.145 Sum_probs=148.8
Q ss_pred cchhhcccCC-chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 5 PYQQELSKNP-SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 5 ~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
.|+++++.+| .+..+++.+|.++... |++++|...|++++ ...|..+.++..+|.++..+|+
T Consensus 29 ~~~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al----------------~~~p~~~~~~~~l~~~~~~~~~ 91 (228)
T 4i17_A 29 KYSEYLKLTNNQDSVTAYNCGVCADNI-KKYKEAADYFDIAI----------------KKNYNLANAYIGKSAAYRDMKN 91 (228)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HTTCSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHh-hcHHHHHHHHHHHH----------------HhCcchHHHHHHHHHHHHHccc
Confidence 4788999999 8899999999999999 99999999999988 5778899999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhH-------HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC--cHHHHHHHH
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRA-------VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS--YLKVYQRRA 154 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~-------~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la 154 (229)
+++|+..|++++.++|++ + .++..+|.+ +...|++++|+..|+++++++|+ ++.+++++|
T Consensus 92 ~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~g~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 92 NQEYIATLTEGIKAVPGN-----ATIEKLYAIYYLKEGQK------FQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHHhHH------HHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 999999999999999998 6 669999999 99999999999999999999999 999999999
Q ss_pred HHHHhcccH---------------------------HHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 155 RLYQQSDKL---------------------------DEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 155 ~~~~~~~~~---------------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.++...|+. ++|+.+|+++++++|+++.+...++.+.
T Consensus 161 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999998 9999999999999999999888776553
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-23 Score=166.47 Aligned_cols=190 Identities=8% Similarity=0.032 Sum_probs=148.8
Q ss_pred cchhhcccCCchHH----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLY----TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR 80 (229)
Q Consensus 5 ~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (229)
.+.+.+...|+++. .++.+|..+... |++++|...|++++ ...|.++.++..+|.++..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~lg~~~~~ 111 (365)
T 4eqf_A 49 ASEKGYYFHTENPFKDWPGAFEEGLKRLKE-GDLPVTILFMEAAI----------------LQDPGDAEAWQFLGITQAE 111 (365)
T ss_dssp ----CCCCCSSCTTTTCTTHHHHHHHHHHH-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCcccchhHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCcCCHHHHHHHHHHHHH
Confidence 45566666666654 499999999999 99999999999887 3344555566666666666
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHH--------------------------------------
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS-------------------------------------- 122 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~-------------------------------------- 122 (229)
.|++++|+..|++++.++|.+ +.++..+|.++.++|.
T Consensus 112 ~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 112 NENEQAAIVALQRCLELQPNN-----LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred CCCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence 666666666666666666655 5555555555333321
Q ss_pred hhccCChHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhh
Q psy13014 123 YLSLEKPDQSILACSKAITLNPS--YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNG 200 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 200 (229)
+...|++++|+..+++++.++|+ ++.++..+|.++...|++++|+..|+++++++|++..++..++.++ ...+++.+
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~ 265 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATL-ANGDRSEE 265 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHH
T ss_pred HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHH
Confidence 66788999999999999999999 8999999999999999999999999999999999999999999999 88999999
Q ss_pred ccccccccc-ccCCCccc
Q psy13014 201 ATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 201 a~~~~~~~~-~~p~~~~~ 217 (229)
|+..+.+++ ++|++...
T Consensus 266 A~~~~~~al~~~p~~~~~ 283 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRS 283 (365)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhcCCCchHH
Confidence 999999999 88876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=170.90 Aligned_cols=181 Identities=13% Similarity=0.112 Sum_probs=170.8
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEI-RTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
+++.....|++..+++.+|.++... |++ ++|...|++++ ...|.++.++..+|.++...|++
T Consensus 91 l~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~~A~~~~~~al----------------~~~p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 91 MEEVLGSAQVEAQALMLKGKALNVT-PDYSPEAEVLLSKAV----------------KLEPELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHTSS-SSCCHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhccCchhHHHHHHHHHHHHhc-cccHHHHHHHHHHHH----------------hhCCCCHHHHHHHHHHHHHcCCH
Confidence 4456677899999999999999999 999 99999999988 56788899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc---------CChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL---------EKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
++|+.+|++++.++|+ ..++.++|.+ +..+ |++++|+..|+++++++|+++.+|+++|.
T Consensus 154 ~~A~~~~~~al~~~p~------~~~~~~lg~~------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 221 (474)
T 4abn_A 154 TSAHTCFSGALTHCKN------KVSLQNLSMV------LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGN 221 (474)
T ss_dssp HHHHHHHHHHHTTCCC------HHHHHHHHHH------HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCC------HHHHHHHHHH------HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999987 6889999999 9999 99999999999999999999999999999
Q ss_pred HHHhc--------ccHHHHHHHHHHHHHhCC---CcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 156 LYQQS--------DKLDEALADYQKILELDP---NNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 156 ~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
++... |++++|+..|+++++++| +++.++.++|.++ ...+++.+|+..|.+++ ++|++..
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLH-KYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999 999999999999999999 9999999999999 89999999999999999 9998764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=153.67 Aligned_cols=182 Identities=16% Similarity=0.180 Sum_probs=124.0
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++++.+|++..+++.+|.++... |++++|...+++++ ...|..+.++..+|.++...|+++
T Consensus 60 ~~~al~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~----------------~~~~~~~~~~~~la~~~~~~g~~~ 122 (252)
T 2ho1_A 60 LRKALEIDPSSADAHAALAVVFQTE-MEPKLADEEYRKAL----------------ASDSRNARVLNNYGGFLYEQKRYE 122 (252)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HHCcCcHHHHHHHHHHHHHHhHHH
Confidence 3444555555555555555555555 55555555555544 334455666777777777777777
Q ss_pred HHHHHHHHHHH--hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH
Q psy13014 86 ESLAKYNEALR--SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 86 ~A~~~~~~al~--~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 163 (229)
+|+..+++++. ..|.+ ..++..+|.+ +...|++++|+.+++++++..|.+..++..+|.++...|++
T Consensus 123 ~A~~~~~~~~~~~~~~~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 123 EAYQRLLEASQDTLYPER-----SRVFENLGLV------SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHHHHHTTCTTCTTH-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCccCccc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 77777777777 55555 6777777777 77777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 164 DEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 164 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
++|+..++++++.+|.+...+..++.++ ...++..+|.+.+.+++ ..|++..
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLA-KVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHCCCCHH
Confidence 7777777777777777777777777776 66677777777777776 6666544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=159.82 Aligned_cols=185 Identities=11% Similarity=0.134 Sum_probs=152.8
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++++.+|+++.+++.+|.++... |++++|...|++++ ...|.++.++..+|.++...|+++
T Consensus 87 ~~~al~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al----------------~~~~~~~~~~~~l~~~~~~~g~~~ 149 (368)
T 1fch_A 87 FEAAVQQDPKHMEAWQYLGTTQAEN-EQELLAISALRRCL----------------ELKPDNQTALMALAVSFTNESLQR 149 (368)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHC-cCHHHHHHHHHHHH----------------hcCCCCHHHHHHHHHHHHHcCCHH
Confidence 5566677777777777777777777 77777777776665 344566677777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCchh----------------------------------------------hHHHHHhHhhhhhh
Q psy13014 86 ESLAKYNEALRSCPRSCSVS----------------------------------------------RAVFYANRSAALEK 119 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~----------------------------------------------~~~~~~~lg~~~~~ 119 (229)
+|+..+++++...|.+.... .+.++..+|.+
T Consensus 150 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~--- 226 (368)
T 1fch_A 150 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL--- 226 (368)
T ss_dssp HHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHH---
Confidence 77777777776665432111 27788899999
Q ss_pred hHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhh
Q psy13014 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKN 199 (229)
Q Consensus 120 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 199 (229)
+...|++++|+..+++++.++|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++ .+.+++.
T Consensus 227 ---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~-~~~g~~~ 302 (368)
T 1fch_A 227 ---FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC-INLGAHR 302 (368)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCHH
T ss_pred ---HHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred hccccccccc-ccCCC
Q psy13014 200 GATKLSPDVF-LHPGQ 214 (229)
Q Consensus 200 ~a~~~~~~~~-~~p~~ 214 (229)
+|+..+.+++ +.|++
T Consensus 303 ~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 303 EAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999 88866
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=155.26 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=160.1
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH---HHHHHHHHHHHHHccCHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQT---AISLKDEGNALFRLNQWS 85 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~ 85 (229)
..+.+|+++..++.+|..++.. |++++|+..|++++ ...|.+ +.+++.+|.+++..|+++
T Consensus 7 ~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l----------------~~~p~~~~~~~a~~~lg~~~~~~~~~~ 69 (261)
T 3qky_A 7 SGRLRHSSPQEAFERAMEFYNQ-GKYDRAIEYFKAVF----------------TYGRTHEWAADAQFYLARAYYQNKEYL 69 (261)
T ss_dssp ----CCSSHHHHHHHHHHHHHT-TCHHHHHHHHHHHG----------------GGCSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHH----------------HhCCCCcchHHHHHHHHHHHHHhCcHH
Confidence 3467899999999999999999 99999999999887 444544 889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc--------cCChHHHHHHHHHHHhcCCCcHHHH-------
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS--------LEKPDQSILACSKAITLNPSYLKVY------- 150 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~------- 150 (229)
+|+..|++++..+|++.. .+.+++.+|.+ ++. .|++++|+..|+++++.+|++..+.
T Consensus 70 ~A~~~~~~~l~~~p~~~~--~~~a~~~lg~~------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 70 LAASEYERFIQIYQIDPR--VPQAEYERAMC------YYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR 141 (261)
T ss_dssp HHHHHHHHHHHHCTTCTT--HHHHHHHHHHH------HHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCch--hHHHHHHHHHH------HHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH
Confidence 999999999999986521 36789999999 999 9999999999999999999986655
Q ss_pred ----------HHHHHHHHhcccHHHHHHHHHHHHHhCCC---cHHHHHHhccCchHHH----------hhhhhccccccc
Q psy13014 151 ----------QRRARLYQQSDKLDEALADYQKILELDPN---NRDAYVATKVSPDLKL----------KEKNGATKLSPD 207 (229)
Q Consensus 151 ----------~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~----------~~~~~a~~~~~~ 207 (229)
+.+|.++...|++++|+..|+++++.+|+ .+.++..++.++ ..+ +++.+|+..+.+
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~-~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY-IAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH-HHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH-HHhcccchhhcccchHHHHHHHHHH
Confidence 88999999999999999999999999998 567999999998 555 888999999999
Q ss_pred cc-ccCCCcc
Q psy13014 208 VF-LHPGQPQ 216 (229)
Q Consensus 208 ~~-~~p~~~~ 216 (229)
++ ..|++..
T Consensus 221 ~~~~~p~~~~ 230 (261)
T 3qky_A 221 LLQIFPDSPL 230 (261)
T ss_dssp HHHHCTTCTH
T ss_pred HHHHCCCChH
Confidence 99 8887653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=146.01 Aligned_cols=172 Identities=12% Similarity=0.044 Sum_probs=107.8
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
.+|+++.+++.+|.++... |++++|...+++++ ...|..+.++..+|.++...|++++|+..|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 65 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRG-QDYRQATASIEDAL----------------KSDPKNELAWLVRAEIYQYLKVNDKAQESF 65 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH-hhHHHHHHHHHHHH----------------HhCccchHHHHHHHHHHHHcCChHHHHHHH
Confidence 4566666677777766666 77777776666655 233444556666666666666666666666
Q ss_pred HHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc-CChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 92 NEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL-EKPDQSILACSKAIT--LNPSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 92 ~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
++++..+|.+ ..++..+|.+ +... |++++|+..++++++ ..|.+..+++.+|.++...|++++|+.
T Consensus 66 ~~a~~~~~~~-----~~~~~~l~~~------~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 66 RQALSIKPDS-----AEINNNYGWF------LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp HHHHHHCTTC-----HHHHHHHHHH------HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCC-----hHHHHHHHHH------HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666665 6666666666 6666 666666666666666 445555666666666666666666666
Q ss_pred HHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 169 DYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 169 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
.++++++.+|++..++..++.++ ...+++.+|...+.+++ ..|
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 135 YLKRSLAAQPQFPPAFKELARTK-MLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCchHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCC
Confidence 66666666666666666666665 55566666666666655 555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.6e-22 Score=157.59 Aligned_cols=181 Identities=12% Similarity=0.027 Sum_probs=132.5
Q ss_pred hhhcccCCchHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 7 QQELSKNPSFLYTIYFSCFILFILFS-EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 7 ~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
+++++.+|+++.+++.+|.++... | ++++|...|++++ ...|..+.++..+|.++...|+++
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~A~~~~~~a~----------------~~~~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 80 HKLVDLYPSNPVSWFAVGCYYLMV-GHKNEHARRYLSKAT----------------TLEKTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHHHCTTSTHHHHHHHHHHHHS-CSCHHHHHHHHHHHH----------------TTCTTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCcCCHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH----------------HhCCccHHHHHHHHHHHHHccCHH
Confidence 444555555555555555555555 5 5555555555544 345566677778888888888888
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
+|+..|++++...|.+ ...+..+|.+ +...|++++|+..++++++.+|+++.++..+|.++...|++++
T Consensus 143 ~A~~~~~~a~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~ 211 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGC-----HLPMLYIGLE------YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKT 211 (330)
T ss_dssp HHHHHHHHHHHHTTTC-----SHHHHHHHHH------HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcccc-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHH
Confidence 8888888888888777 6777778888 8888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhC---------CCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 166 ALADYQKILELD---------PNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 166 A~~~~~~al~~~---------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
|+..++++++.. |....++..++.++ ...+++.+|+..+.+++ ++|++..
T Consensus 212 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~ 271 (330)
T 3hym_B 212 AEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC-RKLKKYAEALDYHRQALVLIPQNAS 271 (330)
T ss_dssp HHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhCccchH
Confidence 888888888775 66667788888877 77778888888888887 7776543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=156.77 Aligned_cols=183 Identities=10% Similarity=0.167 Sum_probs=170.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|+++.+++.+|.++... |++++|...+++++ ...|..+.++..+|.++...|++
T Consensus 25 ~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 25 QFHAAVDGDPDNYIAYYRRATVFLAM-GKSKAALPDLTKVI----------------ALKMDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHc-cCHHHHHHHHHHHH----------------HhCCCcchHHHHHHHHHHHcCCh
Confidence 47788999999999999999999999 99999999999887 45677788999999999999999
Q ss_pred HHHHHHHHHHHHhCC---CCCchhhHHHHHhH------------hhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 85 SESLAKYNEALRSCP---RSCSVSRAVFYANR------------SAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 85 ~~A~~~~~~al~~~p---~~~~~~~~~~~~~l------------g~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
++|+..|++++..+| .+ ..++..+ |.+ +...|++++|+..++++++.+|+++.+
T Consensus 88 ~~A~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~ 156 (359)
T 3ieg_A 88 DEAEDDFKKVLKSNPSEQEE-----KEAESQLVKADEMQRLRSQALD------AFDGADYTAAITFLDKILEVCVWDAEL 156 (359)
T ss_dssp HHHHHHHHHHHTSCCCHHHH-----HHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhcCCcccCh-----HHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 999999999999999 76 7777776 678 999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+..+|.++...|++++|+..++++++.+|.++.++..++.++ ...+++.+|+..+.+++ .+|++..
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~a~~~~~~~~~ 223 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY-YQLGDHELSLSEVRECLKLDQDHKR 223 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCccchH
Confidence 999999999999999999999999999999999999999999 88999999999999999 8887654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=147.25 Aligned_cols=184 Identities=14% Similarity=0.110 Sum_probs=166.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc-cC
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL-NQ 83 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~ 83 (229)
.|+++++.+|++..+++.+|.++... |++++|...+++++ ...|.++.++..+|.++... |+
T Consensus 30 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~----------------~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 30 SIEDALKSDPKNELAWLVRAEIYQYL-KVNDKAQESFRQAL----------------SIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHc-CChHHHHHHHHHHH----------------HhCCCChHHHHHHHHHHHHhcCc
Confidence 36788899999999999999999999 99999999999887 45566788999999999999 99
Q ss_pred HHHHHHHHHHHHH--hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 84 WSESLAKYNEALR--SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 84 ~~~A~~~~~~al~--~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
+++|+..+++++. ..|.. ..++..+|.+ +...|++++|+..++++++..|.++.++..+|.++...|
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTP-----YIANLNKGIC------SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCH-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCcCCcch-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 9999999999999 55655 8899999999 999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCC-CcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 162 KLDEALADYQKILELDP-NNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
++++|+..++++++.+| .+...+..++.++ ...++..++...+..+. .+|++...
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIA-KALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999 9999988888777 77788888888888777 88877554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.9e-22 Score=173.71 Aligned_cols=144 Identities=18% Similarity=0.227 Sum_probs=137.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..|+++.++.++|.++..+|++++|+.+|+++++++|++ +.++.++|.+ +..+|++++|+.+|++++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~-----~~a~~nLg~~------l~~~g~~~eA~~~~~~Al~l 72 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASV------LQQQGKLQEALMHYKEAIRI 72 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh
Confidence 568899999999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
+|+++.+++++|.++..+|++++|++.|+++++++|++..++.++|.++ .+.+++.+|+..|.+++ ++|++....
T Consensus 73 ~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~-~~~g~~~eAi~~~~~Al~l~P~~~~a~ 148 (723)
T 4gyw_A 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH-KDSGNIPEAIASYRTALKLKPDFPDAY 148 (723)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999 89999999999999999 999876543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=154.57 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=168.9
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|+++.++..+|.++... |++++|...+++++ ...|.++.++..+|.++...|++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 142 FLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAAS----------------KLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------TTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCH
Confidence 46788899999999999999999999 99999999999887 56677889999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHH------------hHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH----
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYA------------NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK---- 148 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~------------~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---- 148 (229)
++|+..|++++..+|.+ ..++. .+|.+ +...|++++|+..++++++..|+++.
T Consensus 205 ~~A~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 273 (359)
T 3ieg_A 205 ELSLSEVRECLKLDQDH-----KRCFAHYKQVKKLNKLIESAEE------LIRDGRYTDATSKYESVMKTEPSVAEYTVR 273 (359)
T ss_dssp HHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHHHHHhhCccc-----hHHHHHHHHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 99999999999999998 55543 44888 99999999999999999999999874
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
++..+|.++...|++++|+..++++++.+|+++.++..+|.++ ...+++.+|...+.+++ ++|++..+.
T Consensus 274 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~a~~~~p~~~~~~ 343 (359)
T 3ieg_A 274 SKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY-LIEEMYDEAIQDYEAAQEHNENDQQIR 343 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCChHHH
Confidence 4667999999999999999999999999999999999999999 89999999999999999 999876543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=154.49 Aligned_cols=192 Identities=11% Similarity=0.154 Sum_probs=166.8
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH--------------------------------HHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ--------------------------------FIF 52 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~ 52 (229)
.|+++++.+|+++.+++.+|.++... |++++|...+++++...+ ...
T Consensus 120 ~~~~al~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (368)
T 1fch_A 120 ALRRCLELKPDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHH
Confidence 46788999999999999999999999 999999999987663211 001
Q ss_pred HHHH-hhhhhhhHHH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCCh
Q psy13014 53 HVLF-YLFCSQKLEQ--TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129 (229)
Q Consensus 53 ~~~~-~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 129 (229)
..+. +.......|. .+.++..+|.++...|++++|+..|++++..+|.+ +.++..+|.+ +...|++
T Consensus 199 ~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~------~~~~g~~ 267 (368)
T 1fch_A 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-----YLLWNKLGAT------LANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCH
T ss_pred HHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHH------HHHcCCH
Confidence 1111 1122234455 67899999999999999999999999999999999 9999999999 9999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc-----------HHHHHHhccCchHHHhhh
Q psy13014 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN-----------RDAYVATKVSPDLKLKEK 198 (229)
Q Consensus 130 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~~~~~~ 198 (229)
++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++++++|++ ..++..++.++ ..+++.
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 346 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL-SMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH-HHHTCG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH-HHhCCh
Confidence 999999999999999999999999999999999999999999999999998 89999999999 888998
Q ss_pred hhccccccccc
Q psy13014 199 NGATKLSPDVF 209 (229)
Q Consensus 199 ~~a~~~~~~~~ 209 (229)
.+|...+.+.+
T Consensus 347 ~~A~~~~~~~l 357 (368)
T 1fch_A 347 DAYGAADARDL 357 (368)
T ss_dssp GGHHHHHTTCH
T ss_pred HhHHHhHHHHH
Confidence 88888777766
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-21 Score=137.60 Aligned_cols=109 Identities=7% Similarity=-0.025 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|+++.+++.+|.++++.|++++|+..|++++.++|.+ +.+|.++|.+ +..+|++++|+.+|+++++
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~-----~~~~~~lg~~------~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN-----VDYIMGLAAI------YQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHHccHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
++|+++.+++++|.++..+|++++|+..|++++++.|+.+
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999876
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=146.10 Aligned_cols=177 Identities=13% Similarity=-0.000 Sum_probs=163.9
Q ss_pred cccCCch-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 10 LSKNPSF-LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 10 l~~~p~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
-+.+|++ +.+++.+|.++... |++++|...+++++ ...|..+.++..+|.++...|++++|+
T Consensus 29 ~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al----------------~~~~~~~~~~~~la~~~~~~~~~~~A~ 91 (252)
T 2ho1_A 29 TDKGRDEARDAYIQLGLGYLQR-GNTEQAKVPLRKAL----------------EIDPSSADAHAALAVVFQTEMEPKLAD 91 (252)
T ss_dssp --CCHHHHHHHHHHHHHHHHHT-TCTGGGHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHc-CChHHHHHHHHHHH----------------hcCCChHHHHHHHHHHHHHcCCHHHHH
Confidence 3567877 88999999999999 99999999999887 455677889999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT--LNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
..|++++..+|.+ ..++..+|.+ +...|++++|+.++++++. ..|.+..++..+|.++...|++++|
T Consensus 92 ~~~~~a~~~~~~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 92 EEYRKALASDSRN-----ARVLNNYGGF------LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHCcCc-----HHHHHHHHHH------HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999998 9999999999 9999999999999999999 8899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 167 LADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 167 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
+..++++++.+|.+..++..++.++ ...+++.+|+..+.+++ ..|.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252)
T 2ho1_A 161 KEYFEKSLRLNRNQPSVALEMADLL-YKEREYVPARQYYDLFAQGGGQNA 209 (252)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCcCcH
Confidence 9999999999999999999999999 88999999999999988 777554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-21 Score=158.59 Aligned_cols=184 Identities=13% Similarity=0.085 Sum_probs=169.6
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|++..+++.+|.++... |++++|...|++++ ...|.++.++..+|.++...|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~ 227 (450)
T 2y4t_A 165 FLDKILEVCVWDAELRELRAECFIKE-GEPRKAISDLKAAS----------------KLKNDNTEAFYKISTLYYQLGDH 227 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCGGGGHHHHHHHH----------------HHHCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCH
Confidence 46788899999999999999999999 99999999999887 45567788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhH------------hhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH----
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANR------------SAALEKLASYLSLEKPDQSILACSKAITLNPSYLK---- 148 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~l------------g~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---- 148 (229)
++|+..|++++..+|++ ...+..+ |.+ +...|++++|+..|++++.+.|+++.
T Consensus 228 ~~A~~~~~~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 296 (450)
T 2y4t_A 228 ELSLSEVRECLKLDQDH-----KRCFAHYKQVKKLNKLIESAEE------LIRDGRYTDATSKYESVMKTEPSIAEYTVR 296 (450)
T ss_dssp HHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence 99999999999999998 7776655 888 99999999999999999999999854
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
++..+|.++...|++++|+..++++++++|++..++..++.++ ...+++.+|+..+.+++ ++|++...
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY-LIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 7899999999999999999999999999999999999999999 89999999999999999 99977554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5e-21 Score=140.23 Aligned_cols=173 Identities=14% Similarity=0.067 Sum_probs=159.3
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
....+++.+|.++... |++++|...+++.+ ...|.++.++..+|.++...|++++|+..++++
T Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 6 IRQVYYRDKGISHAKA-GRYSQAVMLLEQVY----------------DADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TCHHHHHHHHTTTC----------------CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHh-cCHHHHHHHHHHHH----------------HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788899999999 99999999998876 455667889999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
+...|.+ ..++..+|.+ +...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++
T Consensus 69 ~~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 69 LADAPDN-----VKVATVLGLT------YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp HHHCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCC-----HHHHHHHHHH------HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 9999998 9999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 175 ELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 175 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+.+|.++.++..++.++ ...++..+|...+.+++ ++|++..
T Consensus 138 ~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 138 GLRPNEGKVHRAIAFSY-EQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred hcCccchHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCchh
Confidence 99999999999999999 88899999999999998 8876543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-20 Score=140.82 Aligned_cols=169 Identities=11% Similarity=0.050 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH----------------HHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKD----------------EGNALF 79 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~ 79 (229)
++..++..|..++.. |++++|...|++++ ...|.++.+++. +|.++.
T Consensus 3 ~~~~~~~~g~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 3 SVDEMLQKVSAAIEA-GQNGQAVSYFRQTI----------------ALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65 (208)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH
Confidence 467788999999999 99999999999988 566777778877 999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy13014 80 RLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 159 (229)
..|++++|+..|+++++++|++ +.++.++|.+ +...|++++|+.+|+++++++|+++.+++++|.++..
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNN-----VDCLEACAEM------QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999 9999999999999999999999999999999999987
Q ss_pred ccc--HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 160 SDK--LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 160 ~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
.|+ .+.+...+.+++...|. ..+++.+|.+. ...+++.+|+..|.+++ ++|+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g~~~-~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKM-QYARYRDGLSK-LFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHH-HHHHHHHHHHH-HHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHhCCCch-hHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCH
Confidence 764 45677778777654332 23567778777 77888999999999999 88853
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=172.43 Aligned_cols=170 Identities=9% Similarity=0.002 Sum_probs=155.4
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
+.+|++..+++.+|.++... |++++|...|++++ ...|.++.+++.+|.++...|++++|+..
T Consensus 427 ~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 489 (681)
T 2pzi_A 427 VDFSESVELPLMEVRALLDL-GDVAKATRKLDDLA----------------ERVGWRWRLVWYRAVAELLTGDYDSATKH 489 (681)
T ss_dssp -CCTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHH----------------HHHCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHh----------------ccCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 89999999999999999999 99999999999988 57788899999999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
|+++++++|++ +.++.++|.+ +..+|++++ +.+|+++++++|+++.+++++|.++..+|++++|+..|
T Consensus 490 ~~~al~l~P~~-----~~~~~~lg~~------~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 490 FTEVLDTFPGE-----LAPKLALAAT------AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHHHSTTC-----SHHHHHHHHH------HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCC-----hHHHHHHHHH------HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999 9999999999 999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHhccCchH-H------Hhhhhhccccccccc
Q psy13014 171 QKILELDPNNRDAYVATKVSPDL-K------LKEKNGATKLSPDVF 209 (229)
Q Consensus 171 ~~al~~~p~~~~~~~~l~~~~~~-~------~~~~~~a~~~~~~~~ 209 (229)
+++++++|++..++.+++.++.. . .+++.+|.+.+....
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99999999999999999988621 1 244666666655544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=149.65 Aligned_cols=200 Identities=11% Similarity=0.054 Sum_probs=161.4
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH--------------------------------HHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ--------------------------------FIFH 53 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~~ 53 (229)
|+++++.+|++..+++.+|.++... |++++|...+++.+...+ ....
T Consensus 78 ~~~a~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 78 LNHARMLDPKDIAVHAALAVSHTNE-HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHH
T ss_pred HHHHHhcCcCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHH
Confidence 4556666777777777777777666 777777766665542100 0001
Q ss_pred HHH-hhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHH
Q psy13014 54 VLF-YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQS 132 (229)
Q Consensus 54 ~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A 132 (229)
... +.......|.++.++..+|.++...|++++|+..+++++..+|.+ +.++..+|.+ +...|++++|
T Consensus 157 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A 225 (327)
T 3cv0_A 157 CRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD-----AQLWNKLGAT------LANGNRPQEA 225 (327)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHH
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHcCCHHHH
Confidence 111 111223345567889999999999999999999999999999998 9999999999 9999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC------------cHHHHHHhccCchHHHhhhhh
Q psy13014 133 ILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN------------NRDAYVATKVSPDLKLKEKNG 200 (229)
Q Consensus 133 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~~ 200 (229)
+..++++++.+|+++.++..+|.++...|++++|+..+++++.++|+ +..++..++.++ ..+++..+
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL-NVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH-HhcCCHHH
Confidence 99999999999999999999999999999999999999999999999 899999999998 88999999
Q ss_pred ccccccccc-ccCCCcccc
Q psy13014 201 ATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 201 a~~~~~~~~-~~p~~~~~~ 218 (229)
|...+.+++ ..|+.+.+.
T Consensus 305 A~~~~~~~l~~~~~~~~~~ 323 (327)
T 3cv0_A 305 VELTYAQNVEPFAKEFGLQ 323 (327)
T ss_dssp HHHHTTCCSHHHHHHTTSS
T ss_pred HHHHHHHHHHhcchhhhHH
Confidence 999999888 777665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-21 Score=151.19 Aligned_cols=181 Identities=14% Similarity=0.126 Sum_probs=159.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|+++.+++.+|.++... |++++|...+++++. .. ......+.++..+|.++...|++
T Consensus 25 ~~~~~l~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~-~~------------~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 25 VFNKLEAKKYNSPYIYNRRAVCYYEL-AKYDLAQKDIETYFS-KV------------NATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHHHHHTTCCCSTTHHHHHHHHHHT-TCHHHHHHHHHHHHT-TS------------CTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHH-hhHHHHHHHHHHHHh-cc------------CchhHHHHHHHHHHHHHHHcccH
Confidence 47789999999999999999999999 999999999998872 00 11112355689999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
++|+.+|++++..+|.+ +.++..+|.+ +...|++++|+.+++++++++|.++.+++.+|......++++
T Consensus 91 ~~A~~~~~~a~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 91 SLAIQQYQAAVDRDTTR-----LDMYGQIGSY------FYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHHHHHHHHSTTC-----THHHHHHHHH------HHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCccc-----HHHHHHHHHH------HHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999 999999999999999999999999999999994444556999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh---hhhccccccccc-cc
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPDLKLKE---KNGATKLSPDVF-LH 211 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~---~~~a~~~~~~~~-~~ 211 (229)
+|+..|+++++++|++..++..++.++ ..+++ ..+|+..+.+++ +.
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARAN-AAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHH-HHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHH-HHcCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 66777 777888888887 44
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-22 Score=146.20 Aligned_cols=134 Identities=17% Similarity=0.159 Sum_probs=121.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHH
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQR 152 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 152 (229)
.+|.++...|++++|+..+++++..+|.+ +..++.+|.+ |+..|++++|+.+|+++++++|+++.+|+.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~-----~~~~~~la~~------y~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 70 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK-----SIKGFYFAKL------YYEAKEYDLAKKYICTYINVQERDPKAHRF 70 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH-----HTTHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 37888889999999999999999999987 8999999999 999999999999999999999999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccc-cccc-ccCCCcccc
Q psy13014 153 RARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLS-PDVF-LHPGQPQIQ 218 (229)
Q Consensus 153 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~-~~~~-~~p~~~~~~ 218 (229)
+|.++...|++++|+..|+++++++|+++.++.++|.++ .+.++..++.+.+ .+++ ++|+++.+.
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~~~~aa~~~~~~al~l~P~~~~~~ 137 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELL-CKNDVTDGRAKYWVERAAKLFPGSPAVY 137 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHCSSSSHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhCcCCHHHH
Confidence 999999999999999999999999999999999999999 8888888888775 7888 999887653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-20 Score=144.60 Aligned_cols=177 Identities=11% Similarity=0.130 Sum_probs=148.8
Q ss_pred cchhhcccCCch---HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-
Q psy13014 5 PYQQELSKNPSF---LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR- 80 (229)
Q Consensus 5 ~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 80 (229)
.|+++++.+|++ +.+++.+|.++... |++++|...|++++... ...+..+.+++.+|.+++.
T Consensus 37 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~-------------p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 37 YFKAVFTYGRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIY-------------QIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHHHGGGCSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-------------TTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHC-------------CCCchhHHHHHHHHHHHHHh
Confidence 478899999999 89999999999999 99999999999988321 1234667899999999999
Q ss_pred -------ccCHHHHHHHHHHHHHhCCCCCchhhHHH--------------HHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 81 -------LNQWSESLAKYNEALRSCPRSCSVSRAVF--------------YANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 81 -------~~~~~~A~~~~~~al~~~p~~~~~~~~~~--------------~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
.|++++|+..|++++..+|++... ..+ ++.+|.+ +...|++++|+..|+++
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--~~a~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRYPNHELV--DDATQKIRELRAKLARKQYEAARL------YERRELYEAAAVTYEAV 174 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHCTTCTTH--HHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHHCcCchhH--HHHHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHHHHHHHHH
Confidence 999999999999999999987221 112 2888999 99999999999999999
Q ss_pred HhcCCC---cHHHHHHHHHHHHhc----------ccHHHHHHHHHHHHHhCCCcHH---HHHHhccCchHHHhhhhhccc
Q psy13014 140 ITLNPS---YLKVYQRRARLYQQS----------DKLDEALADYQKILELDPNNRD---AYVATKVSPDLKLKEKNGATK 203 (229)
Q Consensus 140 l~~~p~---~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~~a~~ 203 (229)
++..|+ .+.+++.+|.++..+ |++++|+..|+++++.+|+++. +...++.+. ..++++.++..
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~-~~~~~~~~~~~ 253 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRAR-QRLTELEGDAS 253 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHH-HHHHHHHTCTT
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHH-HHHHHhhhhhH
Confidence 999998 567999999999987 9999999999999999999964 455555555 66666655543
Q ss_pred c
Q psy13014 204 L 204 (229)
Q Consensus 204 ~ 204 (229)
.
T Consensus 254 ~ 254 (261)
T 3qky_A 254 L 254 (261)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-20 Score=156.87 Aligned_cols=184 Identities=15% Similarity=0.026 Sum_probs=135.4
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
+..+.+++..+|+++.+++.+|..+... |++++|...|++++ ...|.++.+++.+|.++...|
T Consensus 12 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l----------------~~~p~~~~~~~~l~~~~~~~g 74 (450)
T 2y4t_A 12 DLGTENLYFQSMADVEKHLELGKKLLAA-GQLADALSQFHAAV----------------DGDPDNYIAYYRRATVFLAMG 74 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTT
T ss_pred cccccccccccHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCCccHHHHHHHHHHHHHCC
Confidence 3467788899999999999999999999 99999999998887 345666777888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH---HHHHHH------
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL---KVYQRR------ 153 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------ 153 (229)
++++|+..|++++..+|.+ ..++..+|.+ +..+|++++|+..|++++..+|++. .++..+
T Consensus 75 ~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 75 KSKAALPDLTKVIQLKMDF-----TAARLQRGHL------LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 8888888888888888877 7788888888 7778888888888888877777776 554444
Q ss_pred ------HHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 154 ------ARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 154 ------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
|.++...|++++|+..|+++++.+|.+..++..++.++ .+.+++.+|+..+.+++ .+|++.
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~ 211 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECF-IKEGEPRKAISDLKAASKLKNDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCGGGGHHHHHHHHHHHCSCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCH
Confidence 55577777777777777777777777777777777777 66777777777777776 666543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-20 Score=141.64 Aligned_cols=175 Identities=17% Similarity=0.224 Sum_probs=152.1
Q ss_pred cchhhcccCCch-------HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH---------HHHHHHHH-hhhhhhhHHHH
Q psy13014 5 PYQQELSKNPSF-------LYTIYFSCFILFILFSEIRTDCHQFERQVFYI---------QFIFHVLF-YLFCSQKLEQT 67 (229)
Q Consensus 5 ~~~~~l~~~p~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~-~~~~~~~~~~~ 67 (229)
.|+++++.+|++ +.+++.+|.++... |++++|...+++++... ......+. +.......|..
T Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 138 (258)
T 3uq3_A 60 TLNDAVEQGREMRADYKVISKSFARIGNAYHKL-GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEK 138 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHhCcccccchHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcch
Confidence 367788888877 78999999999999 99999999999887521 11111111 11223467888
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+.++..+|.++...|++++|+..|++++..+|.+ +.++..+|.+ +...|++++|+.+++++++.+|+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~~~~~~ 207 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAA------LAKLMSFPEAIADCNKAIEKDPNFV 207 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc-----HHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999999999999999999999999 9999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhC------CCcHHHHHHhccCc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELD------PNNRDAYVATKVSP 191 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~ 191 (229)
.++..+|.++...|++++|+..|+++++++ |++..++..++.+.
T Consensus 208 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 208 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 999999999999999999999999999999 99999888877653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-20 Score=140.07 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=149.1
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|++..+++.+|.++... |++++|...+++++ ...+.++.++..+|.++...|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 79 FYDKALELDSSAATAYYGAGNVYVVK-EMYKEAKDMFEKAL----------------RAGMENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHTCCSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHh-ccHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHhccH
Confidence 36788899999999999999999999 99999999999887 45566678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
++|+..+++++...|.+ ..++..+|.+ +...|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 142 ~~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 210 (243)
T 2q7f_A 142 KLALPYLQRAVELNEND-----TEARFQFGMC------LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210 (243)
T ss_dssp HHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCCcc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHH
Confidence 99999999999999998 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+|+..++++++++|+++.++..++.+.
T Consensus 211 ~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 211 KALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 999999999999999999999999876
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-20 Score=148.44 Aligned_cols=179 Identities=11% Similarity=0.100 Sum_probs=150.7
Q ss_pred chhhccc--CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 6 YQQELSK--NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 6 ~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
+++.+.. +|+++.+++.+|.++... |++++|...+++ +.++.++..+|.++..+|+
T Consensus 88 l~~ll~~~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~---------------------~~~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 88 LDREMSRSVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ---------------------GDSLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHHHHSCCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT---------------------CCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHCCC
Confidence 3445543 688888888889888888 888888887743 4566789999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHh--hhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRS--AALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg--~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
+++|+..|++++..+|++ .......+ .+ +...|++++|+..|+++++.+|+++.+++.+|.++..+|
T Consensus 146 ~~~A~~~l~~~~~~~p~~-----~~~~l~~a~~~l------~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g 214 (291)
T 3mkr_A 146 LDLARKELKKMQDQDEDA-----TLTQLATAWVSL------AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQG 214 (291)
T ss_dssp HHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHH------HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhCcCc-----HHHHHHHHHHHH------HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 999999999999999987 54433333 33 445689999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhh-ccccccccc-ccCCCcccc
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNG-ATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~-a~~~~~~~~-~~p~~~~~~ 218 (229)
++++|+..|+++++++|+++.++.+++.++ ...++..+ +.+.+.+++ ++|+++.+.
T Consensus 215 ~~~eA~~~l~~al~~~p~~~~~l~~l~~~~-~~~g~~~eaa~~~~~~~~~~~P~~~~~~ 272 (291)
T 3mkr_A 215 RWEAAEGVLQEALDKDSGHPETLINLVVLS-QHLGKPPEVTNRYLSQLKDAHRSHPFIK 272 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999999999888 77787765 457778888 999887653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-20 Score=160.38 Aligned_cols=200 Identities=11% Similarity=0.067 Sum_probs=160.4
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----HHHH-------------HHHhh-hhhhhHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ----FIFH-------------VLFYL-FCSQKLEQT 67 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~-------------~~~~~-~~~~~~~~~ 67 (229)
|+++++.+|++..++..+|.++... |++++|...|++.+...+ .... .+..+ ......|.+
T Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 440 (597)
T 2xpi_A 362 SNDLVDRHPEKAVTWLAVGIYYLCV-NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440 (597)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhhCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 4555666777777777777777777 777777777766543110 0000 00000 112345567
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-----
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL----- 142 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~----- 142 (229)
+.++..+|.++...|++++|+..|++++...|.+ +.++..+|.+ +...|++++|+..|+++++.
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 509 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD-----PLLLNELGVV------AFNKSDMQTAINHFQNALLLVKKTQ 509 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhhhccc
Confidence 7889999999999999999999999999999998 9999999999 99999999999999999988
Q ss_pred -CCCc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 143 -NPSY-LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 143 -~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
+|++ ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++ ...+++.+|.+.+.+++ ++|++....
T Consensus 510 ~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 510 SNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY-LHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp CCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 6665 789999999999999999999999999999999999999999999 88999999999999999 999876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-21 Score=151.42 Aligned_cols=186 Identities=13% Similarity=0.077 Sum_probs=154.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|++..+++.+|.++... |++++|...+++++ ...|..+.++..+|.++...|++
T Consensus 43 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~----------------~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 43 AFEAVCQAAPEREEAWRSLGLTQAEN-EKDGLAIIALNHAR----------------MLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hcCcCCHHHHHHHHHHHHHcCCH
Confidence 36778888999999999999999988 99999999888887 45567788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCch--------------------------------------------hhHHHHHhHhhhhhhh
Q psy13014 85 SESLAKYNEALRSCPRSCSV--------------------------------------------SRAVFYANRSAALEKL 120 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~--------------------------------------------~~~~~~~~lg~~~~~~ 120 (229)
++|+..+++++...|.+... ..+.++..+|.+
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~---- 181 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL---- 181 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH----
Confidence 99999999999998875211 123455666666
Q ss_pred HHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhh
Q psy13014 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNG 200 (229)
Q Consensus 121 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 200 (229)
+...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.++ ...+++.+
T Consensus 182 --~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~g~~~~ 258 (327)
T 3cv0_A 182 --YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY-SNMSQYDL 258 (327)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHH
T ss_pred --HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhccHHH
Confidence 788888888888888888888888888888888888888888888888888888888888888888888 77888888
Q ss_pred ccccccccc-ccCCC
Q psy13014 201 ATKLSPDVF-LHPGQ 214 (229)
Q Consensus 201 a~~~~~~~~-~~p~~ 214 (229)
|.+.+.+++ ++|++
T Consensus 259 A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCcc
Confidence 888888887 77653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=128.71 Aligned_cols=122 Identities=14% Similarity=0.162 Sum_probs=114.6
Q ss_pred hhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHH
Q psy13014 8 QELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSES 87 (229)
Q Consensus 8 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 87 (229)
+...+||+...++..+|..++.. |++++|+..|++++ ...|.++.+++.+|.++..+|++++|
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~~~~~~~~~~~~~~A 66 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKK-GDYPTAMRHYNEAV----------------KRDPENAILYSNRAACLTKLMEFQRA 66 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHhhHHHhhccHHHH
Confidence 45678999999999999999999 99999999999998 67788999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 88 LAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 88 ~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+..|+++++++|++ +.+|+++|.+ +..+|++++|+.+|+++++++|++..++..++.|+
T Consensus 67 ~~~~~~al~~~p~~-----~~a~~~lg~~------~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 67 LDDCDTCIRLDSKF-----IKGYIRKAAC------LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhh-----hHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999 9999999999 99999999999999999999999999999998764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-20 Score=132.33 Aligned_cols=117 Identities=13% Similarity=0.045 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|.++.+++.+|.+++..|++++|+..|++++..+|.+ +.+|+++|.+ +..+|++++|+.+|++++.
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD-----SRFFLGLGAC------RQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
++|+++.+++++|.++..+|++++|+..|+++++++|+++........
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 131 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR 131 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence 999999999999999999999999999999999999998776544333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-20 Score=140.76 Aligned_cols=187 Identities=13% Similarity=0.017 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.+..++.+|..++.. |++++|+..|++++... ...+....+++.+|.+++..|++++|+..|++++
T Consensus 3 ~~~~~~~~a~~~~~~-g~~~~A~~~~~~~~~~~-------------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 68 (225)
T 2yhc_A 3 PPNEIYATAQQKLQD-GNWRQAITQLEALDNRY-------------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 68 (225)
T ss_dssp CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-------------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-------------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 467889999999999 99999999999887211 1223446799999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHhHhhhhhhhH------------HhhccCChHHHHHHHHHHHhcCCCcHHHH-------------
Q psy13014 96 RSCPRSCSVSRAVFYANRSAALEKLA------------SYLSLEKPDQSILACSKAITLNPSYLKVY------------- 150 (229)
Q Consensus 96 ~~~p~~~~~~~~~~~~~lg~~~~~~~------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~------------- 150 (229)
+.+|++.. .+.+++.+|.++.++| .+...|++++|+..|+++++..|+++.++
T Consensus 69 ~~~P~~~~--~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 69 RLNPTHPN--IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHCTTCTT--HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHCcCCCc--HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 99998722 1357889999822211 01236799999999999999999987554
Q ss_pred ----HHHHHHHHhcccHHHHHHHHHHHHHhCCCcH---HHHHHhccCchHHHhhhhhccccccccc-ccCCCccccc
Q psy13014 151 ----QRRARLYQQSDKLDEALADYQKILELDPNNR---DAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQH 219 (229)
Q Consensus 151 ----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~ 219 (229)
+.+|.++...|++++|+..|+++++..|+++ .++..++.++ .++++..+|++.+.++. ..|++....+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~-~~~g~~~~A~~~~~~l~~~~~~~~~~~~ 222 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAY-RQMQMNAQAEKVAKIIAANSSNTLEHHH 222 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHCCSCCCCCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHH-HHcCCcHHHHHHHHHHHhhCCCchhhcc
Confidence 6789999999999999999999999999986 6799999999 89999999999999888 7777665543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-21 Score=168.86 Aligned_cols=182 Identities=13% Similarity=0.006 Sum_probs=162.3
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
..+|+++.+.+..+ ... |++++|...+++++...- .......|.++.+++.+|.++...|++++|+..
T Consensus 388 ~~~p~~~~a~~~~a---~~~-~~~~~A~~~~~~al~~~~--------~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~ 455 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVL-SQPVQTLDSLRAARHGAL--------DADGVDFSESVELPLMEVRALLDLGDVAKATRK 455 (681)
T ss_dssp CCCTTSTTHHHHHH---TTT-CCHHHHHHHHHHHHTC---------------CCTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCCCCcchHHhhc---ccc-cCHHHHHHHHHHhhhhcc--------cccccccccchhHHHHHHHHHHhcCCHHHHHHH
Confidence 57899999888877 566 999999999987761000 000124577888999999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
|+++++.+|++ +.+|+++|.+ +..+|++++|+..|+++++++|+++.+++++|.++..+|++++ +..|
T Consensus 456 ~~~al~~~p~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~ 523 (681)
T 2pzi_A 456 LDDLAERVGWR-----WRLVWYRAVA------ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFY 523 (681)
T ss_dssp HHHHHHHHCCC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHH
T ss_pred HHHHhccCcch-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHH
Confidence 99999999999 9999999999 9999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 171 QKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 171 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
+++++++|++..++.++|.++ .+++++.+|+..|.+++ ++|++...
T Consensus 524 ~~al~~~P~~~~a~~~lg~~~-~~~g~~~~A~~~~~~al~l~P~~~~a 570 (681)
T 2pzi_A 524 QTVWSTNDGVISAAFGLARAR-SAEGDRVGAVRTLDEVPPTSRHFTTA 570 (681)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHH-HHcCCHHHHHHHHHhhcccCcccHHH
Confidence 999999999999999999999 89999999999999999 99976544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=142.91 Aligned_cols=180 Identities=12% Similarity=-0.023 Sum_probs=149.7
Q ss_pred chhhccc----CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc
Q psy13014 6 YQQELSK----NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL 81 (229)
Q Consensus 6 ~~~~l~~----~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (229)
|+++++. +|+++.+++.+|.++... |++++|...|++++ ...|.++.++..+|.++...
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al----------------~~~~~~~~~~~~la~~~~~~ 90 (275)
T 1xnf_A 28 MEQILASRALTDDERAQLLYERGVLYDSL-GLRALARNDFSQAL----------------AIRPDMPEVFNYLGIYLTQA 90 (275)
T ss_dssp HHHHHTSSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHHc-ccHHHHHHHHHHHH----------------HcCCCcHHHHHHHHHHHHHc
Confidence 5566665 467888999999999999 99999999998887 45667788899999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
|++++|+.+|++++..+|.+ ..++..+|.+ +...|++++|+..++++++++|++.......+.+ ...|
T Consensus 91 ~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 158 (275)
T 1xnf_A 91 GNFDAAYEAFDSVLELDPTY-----NYAHLNRGIA------LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKL 158 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-----THHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHH
T ss_pred cCHHHHHHHHHHHHhcCccc-----cHHHHHHHHH------HHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhc
Confidence 99999999999999999998 8999999999 9999999999999999999999988766655544 5568
Q ss_pred cHHHHHHHHHHHHHhCCCc-------------------------------------HHHHHHhccCchHHHhhhhhcccc
Q psy13014 162 KLDEALADYQKILELDPNN-------------------------------------RDAYVATKVSPDLKLKEKNGATKL 204 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~-------------------------------------~~~~~~l~~~~~~~~~~~~~a~~~ 204 (229)
++++|+..+.+++...|.+ ..++..+|.++ ...+++.+|...
T Consensus 159 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~ 237 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY-LSLGDLDSATAL 237 (275)
T ss_dssp CHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH-HHcCCHHHHHHH
Confidence 8888888887777766654 46667777777 777888888888
Q ss_pred ccccc-ccCCCc
Q psy13014 205 SPDVF-LHPGQP 215 (229)
Q Consensus 205 ~~~~~-~~p~~~ 215 (229)
+.+++ ++|+++
T Consensus 238 ~~~al~~~p~~~ 249 (275)
T 1xnf_A 238 FKLAVANNVHNF 249 (275)
T ss_dssp HHHHHTTCCTTC
T ss_pred HHHHHhCCchhH
Confidence 88888 777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-19 Score=131.52 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=142.3
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|++..+++.+|.++... |++++|...+++.+ ...|..+.++..+|.++...|++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 30 LLEQVYDADAFDVDVALHLGIAYVKT-GAVDRGTELLERSL----------------ADAPDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHTTTCCTTSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCccChHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hcCCCCHHHHHHHHHHHHHhcCH
Confidence 36788899999999999999999999 99999999999887 45567788999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
++|+..+++++...|.+ +.++..+|.+ +...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus 93 ~~A~~~~~~~~~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 93 DLAVPLLIKVAEANPIN-----FNVRFRLGVA------LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCcHh-----HHHHHHHHHH------HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHH
Confidence 99999999999999998 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHH
Q psy13014 165 EALADYQKILELDPNNRDAY 184 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~ 184 (229)
+|+..++++++.+|++....
T Consensus 162 ~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 162 EALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHHcCCCchhhH
Confidence 99999999999999876543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=125.34 Aligned_cols=115 Identities=24% Similarity=0.387 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..+..+..+|..++..|++++|+..|++++.++|.+ +.++.++|.+ +..+|++++|+.+++++++++|+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~al~~~p~ 70 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED-----ARGYSNRAAA------LAKLMSFPEAIADCNKAIEKDPN 70 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHH------HHHhcCHHHHHHHHHHHHHhCCC
Confidence 467789999999999999999999999999999999 9999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC------CCcHHHHHHhccCc
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELD------PNNRDAYVATKVSP 191 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~ 191 (229)
++.+++.+|.++..+|++++|+..|+++++++ |++..++..++.+.
T Consensus 71 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999988887665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-21 Score=155.13 Aligned_cols=175 Identities=21% Similarity=0.293 Sum_probs=145.6
Q ss_pred hcccCCchHHHHHHHHHHHH------------HhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILF------------ILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGN 76 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 76 (229)
++.++|++ ++...|.... .+ +++++|...+++.+ ...+..+.++..+|.
T Consensus 95 ~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L-~~~~~A~~~~~~a~----------------~~~p~~a~~~~~~g~ 155 (336)
T 1p5q_A 95 IVYLKPSY--AFGSVGKEKFQIPPNAELKYELHL-KSFEKAKESWEMNS----------------EEKLEQSTIVKERGT 155 (336)
T ss_dssp EEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEE-EEEECCCCGGGCCH----------------HHHHHHHHHHHHHHH
T ss_pred EEEECCcc--ccCcCCCCccCCCCCCeEEEEEEE-eecccccchhcCCH----------------HHHHHHHHHHHHHHH
Confidence 67778876 3333332221 33 56677777776655 467889999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCC----------chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSC----------SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~----------~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
+++..|++++|+..|++++.++|.+. ......++.++|.+ +..+|++++|+.+|+++++++|++
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~------~~~~g~~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC------HLKLQAFSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999872 11125899999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhc-cccccccc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGA-TKLSPDVF 209 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a-~~~~~~~~ 209 (229)
+.+++++|.++..+|++++|+.+|+++++++|++..++..++.++ ..+++..++ .+.|.+++
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~-~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ-QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998 777777766 33444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-20 Score=157.15 Aligned_cols=184 Identities=17% Similarity=0.091 Sum_probs=165.4
Q ss_pred cchhhcccCCchHH-------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLY-------TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNA 77 (229)
Q Consensus 5 ~~~~~l~~~p~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 77 (229)
.|+++++.+|+++. +++.+|.++... |++++|...+++++ ...|. +.++..+|.+
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~~~----------------~~~~~-~~~~~~l~~~ 285 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLK-NNLLDAQVLLQESI----------------NLHPT-PNSYIFLALT 285 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCCC-HHHHHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHH----------------hcCCC-chHHHHHHHH
Confidence 46778899999866 466677777777 88899999998887 34455 7889999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
+...|++++|+..|++++..+|.+ +.++..+|.+ +...|++++|+..+++++..+|+++.++..+|.++
T Consensus 286 ~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 286 LADKENSQEFFKFFQKAVDLNPEY-----PPTYYHRGQM------YFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354 (537)
T ss_dssp TCCSSCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHhccCCCC-----HHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999 99999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 158 QQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
...|++++|+..++++++.+|+++.++..++.++ ...+++.+|++.+.+++ +.|++....
T Consensus 355 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL-TDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 9999999999999999999999999999999999 88999999999999999 888665443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=158.99 Aligned_cols=183 Identities=16% Similarity=0.169 Sum_probs=154.0
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++++.+|++..++..+|.++... |++++|...+++++ ...|.++.++..+|.++...|+++
T Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 293 FDKALKLDSNNSSVYYHRGQMNFIL-QNYDQAGKDFDKAK----------------ELDPENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp HHHHHTTCTTCTHHHHHHHHHHHHT-TCTTHHHHHHHHHH----------------HTCSSCSHHHHHHHHHTTTTTCHH
T ss_pred HHHHhhcCcCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHH----------------HhChhhHHHHHHHHHHHHHcCCHH
Confidence 5556666777777777777777666 77777777666665 445666778889999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHh
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK------VYQRRARLYQQ 159 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~ 159 (229)
+|+..+++++...|.+ +.++..+|.+ +...|++++|+..+++++...|++.. +++.+|.++..
T Consensus 356 ~A~~~~~~~~~~~~~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 356 DCETLFSEAKRKFPEA-----PEVPNFFAEI------LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHHHHHHHHHHHSTTC-----SHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999988 8889999999 99999999999999999999888754 89999999999
Q ss_pred ---cccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 160 ---SDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 160 ---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
.|++++|+..|++++..+|++..++..++.++ ...+++.+|...+.+++ ++|++...
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~~~~~~ 485 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK-LQQEDIDEAITLFEESADLARTMEEK 485 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSSHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999999999998 88899999999999998 88866543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=135.34 Aligned_cols=168 Identities=21% Similarity=0.165 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
..+-..+.....+ |+++.+...++... ...+..+..+..+|..++..|+|++|+..|++++.+
T Consensus 5 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 67 (198)
T 2fbn_A 5 HHHHHHSSGRENL-YFQGAKKSIYDYTD----------------EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF 67 (198)
T ss_dssp ------------------CCCSGGGCCH----------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhh-hhccccCchhhCCH----------------HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3334445555556 77777777665443 466778889999999999999999999999999999
Q ss_pred CCCCCchh-----------hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 98 CPRSCSVS-----------RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 98 ~p~~~~~~-----------~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
.|.+.... ...++.++|.+ +..+|++++|+.++++++.++|+++.+++++|.++..+|++++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 141 (198)
T 2fbn_A 68 FIHTEEWDDQILLDKKKNIEISCNLNLATC------YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141 (198)
T ss_dssp TTTCTTCCCHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHH
Confidence 98872100 12899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcc-ccccccc
Q psy13014 167 LADYQKILELDPNNRDAYVATKVSPDLKLKEKNGAT-KLSPDVF 209 (229)
Q Consensus 167 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~-~~~~~~~ 209 (229)
+..|+++++++|++..++..++.+. ..+++..++. ..+..++
T Consensus 142 ~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 142 KENLYKAASLNPNNLDIRNSYELCV-NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH-HHHHHHHC----------
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998 7777777766 4444444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-21 Score=149.04 Aligned_cols=184 Identities=14% Similarity=0.118 Sum_probs=161.9
Q ss_pred chhhcccCCch----HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc
Q psy13014 6 YQQELSKNPSF----LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL 81 (229)
Q Consensus 6 ~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (229)
|+++++ .|++ ..+++.+|.++... |++++|...|++++ ...|..+.++..+|.++...
T Consensus 60 ~~~a~~-~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a~----------------~~~~~~~~~~~~l~~~~~~~ 121 (272)
T 3u4t_A 60 IETYFS-KVNATKAKSADFEYYGKILMKK-GQDSLAIQQYQAAV----------------DRDTTRLDMYGQIGSYFYNK 121 (272)
T ss_dssp HHHHHT-TSCTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHh-ccCchhHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHH----------------hcCcccHHHHHHHHHHHHHc
Confidence 566676 4443 34589999999999 99999999999988 46677788999999999999
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHh-hhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRS-AALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS 160 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 160 (229)
|++++|+..|++++..+|.+ +.++.++| .+ + ..+++++|+..++++++++|++..+++.+|.++..+
T Consensus 122 ~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~~------~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 189 (272)
T 3u4t_A 122 GNFPLAIQYMEKQIRPTTTD-----PKVFYELGQAY------Y-YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ 189 (272)
T ss_dssp TCHHHHHHHHGGGCCSSCCC-----HHHHHHHHHHH------H-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhhcCCCc-----HHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 99999999999999999999 99999999 55 5 456999999999999999999999999999999999
Q ss_pred cc---HHHHHHHHHHHHHhC---CCc-----HHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccccC
Q psy13014 161 DK---LDEALADYQKILELD---PNN-----RDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQHN 220 (229)
Q Consensus 161 ~~---~~~A~~~~~~al~~~---p~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~~ 220 (229)
|+ +++|+..|++++++. |+. ..++..+|.++ ...+++.+|+..+.+++ ++|++......
T Consensus 190 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 190 DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY-TINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp STTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 99 999999999999986 542 36888899998 88999999999999999 99988766544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-19 Score=128.93 Aligned_cols=117 Identities=9% Similarity=-0.040 Sum_probs=112.5
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
+..|+++++++|+++.+++.+|.++... |++++|...|++++ ...|.++.+|+.+|.++...|
T Consensus 22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~-g~~~eA~~~~~~al----------------~~~P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 22 GATLKDINAIPDDMMDDIYSYAYDFYNK-GRIEEAEVFFRFLC----------------IYDFYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp SCCTGGGCCSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHHc
Confidence 5678999999999999999999999999 99999999999998 678999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
++++|+.+|++++.++|++ +.+|+++|.+ +..+|++++|+.+|++++++.|+.+
T Consensus 85 ~~~~Ai~~~~~al~l~P~~-----~~~~~~lg~~------~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 85 QFQQAADLYAVAFALGKND-----YTPVFHTGQC------QLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CHHHHHHHHHHHHHHSSSC-----CHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred cHHHHHHHHHHHHhhCCCC-----cHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999 9999999999 9999999999999999999999875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=129.87 Aligned_cols=126 Identities=25% Similarity=0.325 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCCchhhHHHHHhHhhhhhhhHHhhcc
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRS------------------CPRSCSVSRAVFYANRSAALEKLASYLSL 126 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~~lg~~~~~~~~~~~~ 126 (229)
...+..+...|..++..|+|++|+..|.+++.+ +|.. ..++.++|.| +..+
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~nla~~------~~~~ 76 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN-----IPLYANMSQC------YLNI 76 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH-----HHHHHHHHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH-----HHHHHHHHHH------HHhc
Confidence 456788999999999999999999999999999 4444 7899999999 9999
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH-HHHHHhccCchHHHhhhhhcc
Q psy13014 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR-DAYVATKVSPDLKLKEKNGAT 202 (229)
Q Consensus 127 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~a~ 202 (229)
|++++|+.++++++.++|+++.+++++|.++..+|++++|+..|+++++++|+++ .+...++.+. .++++..+..
T Consensus 77 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~-~~~~~~~~~~ 152 (162)
T 3rkv_A 77 GDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT-ERRAEKKADS 152 (162)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-HHHHHHTTSS
T ss_pred CcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 7788888887 5666544443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-20 Score=157.17 Aligned_cols=182 Identities=19% Similarity=0.226 Sum_probs=146.1
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++++.+|+++.+++.+|.++... |++++|...+++++ ...|.++.++..+|.++...|+++
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~----------------~~~~~~~~~~~~la~~~~~~g~~~ 361 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFIL-QDYKNAKEDFQKAQ----------------SLNPENVYPYIQLACLLYKQGKFT 361 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCHH
Confidence 4566667777777777777777777 77777777776665 445666778888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHh
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK------VYQRRARLYQQ 159 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~ 159 (229)
+|+..+++++..+|.+ +.++..+|.+ +...|++++|+..++++++..|++.. .++.+|.++..
T Consensus 362 ~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 362 ESEAFFNETKLKFPTL-----PEVPTFFAEI------LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp HHHHHHHHHHHHCTTC-----THHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC-----hHHHHHHHHH------HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 8888888888888888 8888888888 88888999999999888888765543 35666788888
Q ss_pred c----------ccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 160 S----------DKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 160 ~----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
. |++++|+..|+++++.+|++..++..++.++ ...++..+|+..+.+++ ++|.+..
T Consensus 431 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 431 QSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK-LQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp HHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred HhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCCcHH
Confidence 8 9999999999999999999999999999998 88889999999999998 8885543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-19 Score=154.72 Aligned_cols=198 Identities=12% Similarity=-0.012 Sum_probs=137.1
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----HHHH-------------HHHhh-hhhhhHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ----FIFH-------------VLFYL-FCSQKLEQ 66 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~-------------~~~~~-~~~~~~~~ 66 (229)
-|+++++.+|++..++..++.++... |++++|...+++.+...+ .... ....+ ......|.
T Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 405 (597)
T 2xpi_A 327 ITTKILEIDPYNLDVYPLHLASLHES-GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405 (597)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHH-TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 47888999999999999999999999 999999999987762210 0000 00000 11122344
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
+..++..+|.++...|++++|+..|++++...|.+ ..++..+|.+ +...|++++|+..|+++++.+|.+
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT-----HLPYLFLGMQ------HMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTC-----SHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----hHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCC
Confidence 55666777777777777777777777777777766 6667777777 777777777777777777777777
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHh------CCCc-HHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILEL------DPNN-RDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
+.++..+|.++...|++++|+..|+++++. +|++ ..++..++.++ .+.+++.+|++.+.+++ ++|++.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY-RKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCCh
Confidence 777777777777777777777777777766 5543 56677777776 66677777777777776 666543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-19 Score=151.34 Aligned_cols=157 Identities=10% Similarity=0.054 Sum_probs=141.2
Q ss_pred ccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 4 LPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 4 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
-.|+++++.+|++..+++.+|.++... |++++|...+++++ ...|.++.++..+|.++...|+
T Consensus 10 ~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 10 LQLRAAVRHRPQDFVAWLMLADAELGM-GDTTAGEMAVQRGL----------------ALHPGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp -----------CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHH----------------TTSTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHCCC
Confidence 458899999999999999999999999 99999999999998 5678889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc---
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQS--- 160 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 160 (229)
+++|+..|+++++++|++ ..++.++|.+ +..+|++++|++.++++++++|++..++.++|.++..+
T Consensus 73 ~~~A~~~~~~al~~~p~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEH-----PGIALWLGHA------LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcc
Confidence 999999999999999999 9999999999 99999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 161 DKLDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
|++++|+..++++++.+|++...+..++
T Consensus 142 g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp TTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999988888887
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=136.82 Aligned_cols=156 Identities=12% Similarity=0.019 Sum_probs=133.7
Q ss_pred cchhhcccCCchHHHHHH----------------HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYF----------------SCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTA 68 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~----------------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (229)
.|+++++.+|+++.+++. +|.++... |++++|...|++++ ...|.++
T Consensus 26 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~ 88 (208)
T 3urz_A 26 YFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYKELL----------------QKAPNNV 88 (208)
T ss_dssp HHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCH
T ss_pred HHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HHCCCCH
Confidence 478899999999999999 99999999 99999999999998 6778899
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCC--hHHHHHHHHHHHhcCCCc
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEK--PDQSILACSKAITLNPSY 146 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~--~~~A~~~~~~al~~~p~~ 146 (229)
.+++.+|.++...|++++|+..|++++.++|++ +.+++++|.+ ++..|+ ...+...+.+++...| .
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~------~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEADN-----LAANIFLGNY------YYLTAEQEKKKLETDYKKLSSPTK-M 156 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHHHHHHHHHHHHHC---CCCH-H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHHhHHHHHHHHHHHHHHhCCCc-h
Confidence 999999999999999999999999999999999 9999999999 876654 4566778888765433 3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
..+++++|.++...|++++|+.+|+++++++|+.. +...+..+
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i 199 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI 199 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence 45788999999999999999999999999999754 44444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-19 Score=123.19 Aligned_cols=111 Identities=23% Similarity=0.397 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..++.+.++..+|..++..|+|++|+.+|++++.++|++ +.+|.++|.+ +..+|++++|+.+|++++++
T Consensus 3 ~~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~-----~~~~~nlg~~------~~~~~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 3 AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN-----ITFYNNKAAV------YFEEKKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHhHHHH------HHHhhhHHHHHHHHHHHHHh
Confidence 346778889999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 143 NPSY-------LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 143 ~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
+|++ ..+++++|.++..+|++++|+..|+++++..|+ ++...
T Consensus 72 ~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 72 GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred CcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHH
Confidence 8765 358999999999999999999999999999885 44433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=130.30 Aligned_cols=121 Identities=16% Similarity=0.150 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR-------SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
...+..+...|..++..|+|++|+..|+++++++|+ +.....+.+|.++|.+ +..+|+|++|+.+|+
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~a------l~~Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA------LAGLRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHH------HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHH------HHHCCCHHHHHHHHH
Confidence 346678899999999999999999999999999998 4111234599999999 999999999999999
Q ss_pred HHHhc-------CCCcHHHH----HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 138 KAITL-------NPSYLKVY----QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 138 ~al~~-------~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
++|++ +|++..+| +++|.++..+|++++|+.+|+++++++|++......+..+.
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 99999 99999999 99999999999999999999999999999988877777665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.7e-20 Score=135.22 Aligned_cols=167 Identities=12% Similarity=0.039 Sum_probs=144.0
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
||+....++..|..+... |++++|...|++++ ...|.++.+++.+|.++...|++++|+..++
T Consensus 2 ~~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al----------------~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~ 64 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQ-GEHAQALNVIQTLS----------------DELQSRGDVKLAKADCLLETKQFELAQELLA 64 (176)
T ss_dssp ----CTTHHHHHHHHHHT-TCHHHHHHHHHTSC----------------HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566667788999999999 99999999999887 6789999999999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhh-ccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYL-SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
+++...| + +..+..++.+ .. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+
T Consensus 65 ~a~~~~p-~-----~~~~~~~~~~------~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 65 TIPLEYQ-D-----NSYKSLIAKL------ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp TCCGGGC-C-----HHHHHHHHHH------HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhhccC-C-----hHHHHHHHHH------HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999 7 7666666644 32 23344568999999999999999999999999999999999999999
Q ss_pred HHHHhCCCc--HHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 172 KILELDPNN--RDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 172 ~al~~~p~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++++.+|+. ..++.+++.++ ..+++..+|+..|.+++
T Consensus 133 ~~l~~~p~~~~~~a~~~l~~~~-~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 133 NILKVNLGAQDGEVKKTFMDIL-SALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCTTTTTTHHHHHHHHHH-HHHCSSCHHHHHHHHHH
T ss_pred HHHHhCcccChHHHHHHHHHHH-HHhCCCCcHHHHHHHHH
Confidence 999999986 56999999998 88888888888887664
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.9e-19 Score=125.30 Aligned_cols=119 Identities=14% Similarity=0.081 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|.+...++.+|..++..|++++|+..|++++..+|.+ +.+|..+|.+ +...|++++|+.+|++++.
T Consensus 12 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 12 GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD-----ARYFLGLGAC------RQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+.
T Consensus 81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999887766555554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=143.63 Aligned_cols=188 Identities=9% Similarity=0.037 Sum_probs=121.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHh------hhhh-------hhhHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFIL------FSEI-------RTDCHQFERQVFYIQFIFHVLFYLFCSQ-KLEQTAIS 70 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 70 (229)
.|++++..+|+++.+++.+|.++... .|++ ++|...|++++ . ..|.+..+
T Consensus 38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl----------------~~~~p~~~~~ 101 (308)
T 2ond_A 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI----------------STLLKKNMLL 101 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHH----------------TTTTTTCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHH----------------HHhCcccHHH
Confidence 68899999999999999999887632 1665 88999998888 3 35666777
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHH-HHHhHhhhhhhhHH---------------------------
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAV-FYANRSAALEKLAS--------------------------- 122 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~lg~~~~~~~~--------------------------- 122 (229)
|..+|..+...|++++|...|++++++.|.+ +. +|..+|.++.++|.
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 176 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC-----THHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhccccC-----ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 7788888888888888888888888877776 54 67777777222221
Q ss_pred -hh-ccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---CCC-cHHHHHHhccCchHHHh
Q psy13014 123 -YL-SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL---DPN-NRDAYVATKVSPDLKLK 196 (229)
Q Consensus 123 -~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~~l~~~~~~~~~ 196 (229)
.. ..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.. +|+ ...+|..++.+. .+.+
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~-~~~g 255 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE-SNIG 255 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH-HHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHcC
Confidence 11 1355555555555555555555555555555555555555555555555553 332 444555555554 4455
Q ss_pred hhhhccccccccc-ccCCC
Q psy13014 197 EKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 197 ~~~~a~~~~~~~~-~~p~~ 214 (229)
+..++...+.+++ ..|++
T Consensus 256 ~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 256 DLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHHHcccc
Confidence 5555555555555 55543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=141.60 Aligned_cols=167 Identities=7% Similarity=-0.001 Sum_probs=128.6
Q ss_pred cchhhcc-cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH-----HHH---HHHH-----------hhhhhhhH
Q psy13014 5 PYQQELS-KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ-----FIF---HVLF-----------YLFCSQKL 64 (229)
Q Consensus 5 ~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~---~~~~-----------~~~~~~~~ 64 (229)
.|+++++ ++|++..++..+|.++... |++++|...|++++...+ ... .... +.......
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 4678888 6899998999999888888 899999988888764211 000 0000 00111222
Q ss_pred HHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-
Q psy13014 65 EQTAISLKDEGNALFR-LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL- 142 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~- 142 (229)
|....++...+..... .|++++|+..|++++..+|++ +.+|..+|.. +..+|++++|+..|++++..
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~------~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI-----PEYVLAYIDY------LSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC-----HHHHHHHHHH------HHTTCCHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcc
Confidence 3334455545544433 699999999999999999998 9999999999 99999999999999999996
Q ss_pred --CCC-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 143 --NPS-YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 143 --~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
.|+ ....|..++..+...|++++|...++++++..|++...
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 553 78899999999999999999999999999999986643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-20 Score=154.43 Aligned_cols=181 Identities=16% Similarity=0.181 Sum_probs=144.7
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|+++++.+|+ ..+++.+|.++... |++++|...+++++ ...|.++.++..+|.++...|+++
T Consensus 260 ~~~~l~~~~~-~~~~~~l~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 260 IKKAIELFPR-VNSYIYMALIMADR-NDSTEYYNYFDKAL----------------KLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHHCCC-HHHHHHHHHHHHTS-SCCTTGGGHHHHHH----------------TTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhCcc-HHHHHHHHHHHHHC-CCHHHHHHHHHHHh----------------hcCcCCHHHHHHHHHHHHHhCCHH
Confidence 4445555555 55555555555555 55555555555554 445666778888999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
+|+..|++++...|.+ ..++..+|.+ +...|++++|+..++++++..|+++.++..+|.++...|++++
T Consensus 322 ~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 322 QAGKDFDKAKELDPEN-----IFPYIQLACL------AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHHHHHHHHTCSSC-----SHHHHHHHHH------TTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhChhh-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999998888 8888899999 8899999999999999999999988999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHH------HHHHhccCchHH---Hhhhhhccccccccc-ccCCCcc
Q psy13014 166 ALADYQKILELDPNNRD------AYVATKVSPDLK---LKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 166 A~~~~~~al~~~p~~~~------~~~~l~~~~~~~---~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
|+..+++++..+|+++. ++..++.++ .. .+++.+|+..+.+++ .+|++..
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 450 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLL-TRNPTVENFIEATNLLEKASKLDPRSEQ 450 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH-HTSCCTTHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHHHhCcccHH
Confidence 99999999998888865 888888888 67 888889999888888 7776543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=141.93 Aligned_cols=169 Identities=12% Similarity=-0.042 Sum_probs=156.3
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
.-|++...++.+|..+... |++++|...|++++ ...|+++.+++.+|.++...|++++|+..+
T Consensus 112 ~lp~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al----------------~~~P~~~~a~~~la~~~~~~g~~~~A~~~l 174 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQE-SNYTDALPLLXDAW----------------QLSNQNGEIGLLLAETLIALNRSEDAEAVL 174 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHTTSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhC-CCHHHHHHHHHHHH----------------HhCCcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 3488999999999999999 99999999999988 678889999999999999999999999999
Q ss_pred HHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHH
Q psy13014 92 NEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 92 ~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
++++..+|+. ...+...+.. +...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.
T Consensus 175 ~~~~~~~p~~-----~~~~~~~~~~------l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 175 XTIPLQDQDT-----RYQGLVAQIE------LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp TTSCGGGCSH-----HHHHHHHHHH------HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCchhhcch-----HHHHHHHHHH------HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999976 7777778888 8888999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCc--HHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 172 KILELDPNN--RDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 172 ~al~~~p~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++++.+|++ ..++..++.++ ..+++..++...|.+.+
T Consensus 244 ~~l~~~p~~~~~~a~~~l~~~~-~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 244 GHLRXDLTAADGQTRXTFQEIL-AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTGGGGHHHHHHHHHH-HHHCTTCHHHHHHHHHH
T ss_pred HHHhcccccccchHHHHHHHHH-HHcCCCCcHHHHHHHHH
Confidence 999999999 88999999998 88888888888777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=126.81 Aligned_cols=126 Identities=23% Similarity=0.345 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+..+..++.+|.+++..|++++|+..|++++.++|.+ +.++.++|.+ +..+|++++|+.+|++++++
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN-----PIYLSNRAAA------YSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC-----HHHHHHHHHH------HHHccCHHHHHHHHHHHHHh
Confidence 446788899999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCch-HHHhhhh
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPD-LKLKEKN 199 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~ 199 (229)
+|+++.+++++|.++..+|++++|+.+|+++++++|++..++...+.... .++++..
T Consensus 75 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 132 (164)
T 3sz7_A 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN 132 (164)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999986665554431 4444433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=152.69 Aligned_cols=156 Identities=10% Similarity=0.040 Sum_probs=133.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 111 (229)
|++++|...+++++ ...|.++.++..+|.++...|++++|+..|+++++++|++ ..++.
T Consensus 3 g~~~~A~~~~~~al----------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~ 61 (568)
T 2vsy_A 3 ADGPRELLQLRAAV----------------RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-----PEAVA 61 (568)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC-----HHHHH
T ss_pred ccHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHH
Confidence 77888888888877 5678888999999999999999999999999999999999 99999
Q ss_pred hHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 112 ~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
++|.+ +..+|++++|+.+++++++++|++..+++++|.++...|++++|+..|+++++++|++..++.+++.++
T Consensus 62 ~lg~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 62 RLGRV------RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135 (568)
T ss_dssp HHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHH------HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999 999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hHHH---hhhhhccccccccc-ccCCCc
Q psy13014 192 DLKL---KEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 192 ~~~~---~~~~~a~~~~~~~~-~~p~~~ 215 (229)
... ++..+|...+.+++ .+|.+.
T Consensus 136 -~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 136 -RRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp -HHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred -HHhhccccHHHHHHHHHHHHhcCCccc
Confidence 788 89999999999999 888654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=135.83 Aligned_cols=176 Identities=14% Similarity=0.119 Sum_probs=150.7
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|....++..+|.++... |++++|...+++++...... .....+..+.++..+|.++...|++++|+.+|+
T Consensus 39 ~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 109 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQ-NKYKEAAHLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCK 109 (283)
T ss_dssp SHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH--------TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHH--------cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 477888999999999999 99999999999887432200 002347888999999999999999999999999
Q ss_pred HHHHhC--------CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--------CCCcHHHHHHHHHH
Q psy13014 93 EALRSC--------PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--------NPSYLKVYQRRARL 156 (229)
Q Consensus 93 ~al~~~--------p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~ 156 (229)
+++... |.. ..++.++|.+ +...|++++|+.++++++.+ .|....++..+|.+
T Consensus 110 ~al~~~~~~~~~~~~~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 110 RALEIREKVLGKFHPDV-----AKQLNNLALL------CQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp HHHHHHHHHHCTTCHHH-----HHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHH-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999983 444 8899999999 99999999999999999998 77778899999999
Q ss_pred HHhcccHHHHHHHHHHHHHh-------------------------------------------------CCCcHHHHHHh
Q psy13014 157 YQQSDKLDEALADYQKILEL-------------------------------------------------DPNNRDAYVAT 187 (229)
Q Consensus 157 ~~~~~~~~~A~~~~~~al~~-------------------------------------------------~p~~~~~~~~l 187 (229)
+...|++++|+..+++++++ .|....++..+
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSL 258 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999999999999999986 24555678888
Q ss_pred ccCchHHHhhhhhccccccccc
Q psy13014 188 KVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 188 ~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+.++ ...+++.+|...+.+++
T Consensus 259 a~~~-~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 259 GALY-RRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHH-HHcCCHHHHHHHHHHHH
Confidence 8888 78888888888887765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=145.69 Aligned_cols=183 Identities=9% Similarity=0.006 Sum_probs=129.2
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc----
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL---- 81 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 81 (229)
|++++..+|+++.++..+|.++... |++++|...+++++ ...|+++.++..+|.++...
T Consensus 236 ~~~al~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al----------------~~~p~~~~~~~~lg~~y~~~~~~~ 298 (472)
T 4g1t_A 236 VEEALEKAPGVTDVLRSAAKFYRRK-DEPDKAIELLKKAL----------------EYIPNNAYLHCQIGCCYRAKVFQV 298 (472)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHc-CchHHHHHHHHHHH----------------HhCCChHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555 66666665555554 56677788888888887543
Q ss_pred ---------------cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 82 ---------------NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 82 ---------------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
+.+++|+..+++++.++|.. ..++..+|.+ +...|++++|+.+|+++++++|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~lg~~------~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 299 MNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL-----FRVCSILASL------HALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHC------CHHHHHHHHHHHHHHHHHHHHHCTTT-----CCCHHHHHHH------HHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch-----hhhhhhHHHH------HHHhccHHHHHHHHHHHHhcCCCC
Confidence 45789999999999999998 8899999999 999999999999999999999887
Q ss_pred HH---HHHHHHHH-HHhcccHHHHHHHHHHHHHh------------------------CCCcHHHHHHhccCchHHHhhh
Q psy13014 147 LK---VYQRRARL-YQQSDKLDEALADYQKILEL------------------------DPNNRDAYVATKVSPDLKLKEK 198 (229)
Q Consensus 147 ~~---~~~~la~~-~~~~~~~~~A~~~~~~al~~------------------------~p~~~~~~~~l~~~~~~~~~~~ 198 (229)
.. .++.+|.+ +...|++++|+..|++++++ +|+++.++.++|.++ ...+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~-~~~g~~ 446 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ-ELNEKM 446 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH-HHHHHC
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCH
Confidence 54 46667654 45789999999999998876 466778899999999 889999
Q ss_pred hhccccccccc-ccCCCccc
Q psy13014 199 NGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 199 ~~a~~~~~~~~-~~p~~~~~ 217 (229)
.+|++.|++++ +.|.++..
T Consensus 447 ~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 447 QQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp C-------------------
T ss_pred HHHHHHHHHHHhcCCCCCcH
Confidence 99999999999 88866543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-17 Score=115.18 Aligned_cols=124 Identities=34% Similarity=0.542 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...+..+..+..+|..+...|++++|+..|++++...|.+ +.++..+|.+ +...|++++|+..+++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN-----AVYFCNRAAA------YSKLGNYAGAVQDCERAIC 74 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHH------HHHhhchHHHHHHHHHHHh
Confidence 4667889999999999999999999999999999999998 9999999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..++.++ ..+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~ 129 (131)
T 2vyi_A 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAE-LKLRE 129 (131)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHHTT
T ss_pred cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHH-HHHhc
Confidence 99999999999999999999999999999999999999999999999887 55554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-18 Score=135.40 Aligned_cols=179 Identities=12% Similarity=0.051 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP 99 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 99 (229)
+...|.++... |++++|...|.+++..... ....+..+.++..+|.++..+|++++|+.+|++++.+.|
T Consensus 40 ~~~a~~~~~~~-g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~ 108 (292)
T 1qqe_A 40 CVQAATIYRLR-KELNLAGDSFLKAADYQKK----------AGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT 108 (292)
T ss_dssp HHHHHHHHHHT-TCTHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 33445667777 9999999999888743220 123345678999999999999999999999999999987
Q ss_pred CCCchh-hHHHHHhHhhhhhhhHHhhcc-CChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhcccHHHHHHHHH
Q psy13014 100 RSCSVS-RAVFYANRSAALEKLASYLSL-EKPDQSILACSKAITLNPSY------LKVYQRRARLYQQSDKLDEALADYQ 171 (229)
Q Consensus 100 ~~~~~~-~~~~~~~lg~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~ 171 (229)
...... .+.++.++|.+ |... |++++|+.+|++++++.|.+ ..++.++|.++..+|++++|+..|+
T Consensus 109 ~~g~~~~~a~~~~~lg~~------~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 182 (292)
T 1qqe_A 109 HRGQFRRGANFKFELGEI------LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182 (292)
T ss_dssp HTTCHHHHHHHHHHHHHH------HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH------HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 543322 35689999999 9995 99999999999999998754 5679999999999999999999999
Q ss_pred HHHHhCCCcHH-------HHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 172 KILELDPNNRD-------AYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 172 ~al~~~p~~~~-------~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+++.+.|++.. .+.+++.++ ..+++..+|+..+.+++ ++|+...
T Consensus 183 ~al~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQ-LAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHTTSSCTTTGGGHHHHHHHHHHHH-HHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999998754 568888888 88999999999999999 8996543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=130.39 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=139.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 111 (229)
|++++|...|++.+... ....+..+.+++.+|.++...|++++|+..|++++..+|.+ +.++.
T Consensus 19 ~~~~~A~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~ 81 (275)
T 1xnf_A 19 LQQEVILARMEQILASR------------ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFN 81 (275)
T ss_dssp HHHHHHHHHHHHHHTSS------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----HHHHH
T ss_pred chHHHHHHHHHHHHhcc------------cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCc-----HHHHH
Confidence 78888888888877210 01257889999999999999999999999999999999999 99999
Q ss_pred hHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 112 NRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 112 ~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+|.+ +...|++++|+.+|+++++++|+++.++..+|.++...|++++|+..|+++++++|++......++.+
T Consensus 82 ~la~~------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~- 154 (275)
T 1xnf_A 82 YLGIY------LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA- 154 (275)
T ss_dssp HHHHH------HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-
T ss_pred HHHHH------HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-
Confidence 99999 99999999999999999999999999999999999999999999999999999999999776666543
Q ss_pred hHHHhhhhhccccccccc-ccCCC
Q psy13014 192 DLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 192 ~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
...++..+|+..+.+++ ..|.+
T Consensus 155 -~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 155 -EQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp -HHHHCHHHHHHHHHHHHHHSCCC
T ss_pred -HHhcCHHHHHHHHHHHHhcCCcc
Confidence 45688889998888777 66644
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=137.73 Aligned_cols=193 Identities=10% Similarity=-0.039 Sum_probs=146.9
Q ss_pred cchhhcccCC------chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy13014 5 PYQQELSKNP------SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNAL 78 (229)
Q Consensus 5 ~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 78 (229)
.|++++++.+ ....++..+|.++... |++++|+.+|++++...+. .......+.++..+|.++
T Consensus 59 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~----------~g~~~~~a~~~~~lg~~~ 127 (292)
T 1qqe_A 59 SFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTH----------RGQFRRGANFKFELGEIL 127 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHH
Confidence 4566666532 2256888999999999 9999999999998853321 112334567899999999
Q ss_pred HHc-cCHHHHHHHHHHHHHhCCCCCch-hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH-------H
Q psy13014 79 FRL-NQWSESLAKYNEALRSCPRSCSV-SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK-------V 149 (229)
Q Consensus 79 ~~~-~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~ 149 (229)
... |++++|+.+|++++.+.|..... ....++.++|.+ +..+|++++|+.+|++++.+.|++.. +
T Consensus 128 ~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL------KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 996 99999999999999998754322 235678999999 99999999999999999999987643 6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH-----HHhccCch-HHHhhhhhccccccccc-ccCCC
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAY-----VATKVSPD-LKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~l~~~~~-~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
+.++|.++..+|++++|+..|+++++++|+..... ..++..+. ...+++.+|++.|.++. ++|.+
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 88999999999999999999999999999877642 33333331 24456889999998888 88854
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=147.23 Aligned_cols=181 Identities=17% Similarity=0.127 Sum_probs=161.6
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSE----------IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDE 74 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (229)
.+.++++++|++..+|..++.++..+ ++ ++++...+++++ ...|++..+|...
T Consensus 51 ~~~~~l~~nP~~~taW~~R~~~l~~l-~~~~~~~~~~~~~~~eL~~~~~~l----------------~~~pK~y~aW~hR 113 (567)
T 1dce_A 51 LTSQILGANPDFATLWNCRREVLQHL-ETEKSPEESAALVKAELGFLESCL----------------RVNPKSYGTWHHR 113 (567)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHH----------------HHCTTCHHHHHHH
T ss_pred HHHHHHHHCchhHHHHHHHHHHHHhc-ccccchhhhhhhHHHHHHHHHHHH----------------HhCCCCHHHHHHH
Confidence 36789999999999999999999998 87 788888888777 6889999999999
Q ss_pred HHHHHHcc--CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC-ChHHHHHHHHHHHhcCCCcHHHHH
Q psy13014 75 GNALFRLN--QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE-KPDQSILACSKAITLNPSYLKVYQ 151 (229)
Q Consensus 75 g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~ 151 (229)
+.+....+ +++++++.++++++.+|.+ ..+|.+++.+ ....| .+++++++++++++.+|.+..+|+
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N-----~~aW~~R~~~------l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERN-----FHCWDYRRFV------AAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhcccc-----ccHHHHHHHH------HHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 99999999 7799999999999999999 9999999999 99999 899999999999999999999999
Q ss_pred HHHHHHHhc--------------ccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhh------------ccccc
Q psy13014 152 RRARLYQQS--------------DKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNG------------ATKLS 205 (229)
Q Consensus 152 ~la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~------------a~~~~ 205 (229)
.++.++..+ +.++++++++.+++.++|++..+|..++.++ .+.+...+ |+..|
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~f 261 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL-GRAEPHDVLCCVHVSREEACLSVCF 261 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH-SCCCCCSCEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH-hcCCCccceeeeeeccCCceEEEEe
Confidence 999999885 7799999999999999999999999999888 55444333 45557
Q ss_pred cccc-ccCCC
Q psy13014 206 PDVF-LHPGQ 214 (229)
Q Consensus 206 ~~~~-~~p~~ 214 (229)
.+++ ++|..
T Consensus 262 ~~~i~~~~~~ 271 (567)
T 1dce_A 262 SRPLTVGSRM 271 (567)
T ss_dssp EEEECTTBTT
T ss_pred ccceeccccc
Confidence 7777 66653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.1e-17 Score=112.38 Aligned_cols=134 Identities=25% Similarity=0.364 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.+++.+|.++... |++++|...+++.+ ...+.++..+..+|.++...|++++|+..+++++..
T Consensus 2 ~~~~~l~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 64 (136)
T 2fo7_A 2 EAWYNLGNAYYKQ-GDYDEAIEYYQKAL----------------ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64 (136)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHc-CcHHHHHHHHHHHH----------------HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4577788888888 99999998888776 344556778888999999999999999999999999
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
.|.+ ..++..+|.+ +...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+
T Consensus 65 ~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 65 DPRS-----AEAWYNLGNA------YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp CTTC-----HHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred CCCc-----hHHHHHHHHH------HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888 8888999999 9999999999999999999999999999999999999999999999999999888
Q ss_pred CC
Q psy13014 178 PN 179 (229)
Q Consensus 178 p~ 179 (229)
|+
T Consensus 134 ~~ 135 (136)
T 2fo7_A 134 PR 135 (136)
T ss_dssp TT
T ss_pred CC
Confidence 86
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=121.32 Aligned_cols=133 Identities=13% Similarity=-0.009 Sum_probs=116.8
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
+-.|++++..+|++...++.+|.++... |++++|...|++++ ...|.++.+++.+|.++...|
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~lg~~~~~~g 66 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQA-GKWDDAQKIFQALC----------------MLDHYDARYFLGLGACRQSLG 66 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTT
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHH----------------HhCCccHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999 99999999999888 577889999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
++++|+..|++++.++|++ +.+++++|.+ +..+|++++|+.+|+++++++|+++........+...++.
T Consensus 67 ~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 67 LYEQALQSYSYGALMDINE-----PRFPFHAAEC------HLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135 (142)
T ss_dssp CHHHHHHHHHHHHHHCTTC-----THHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCC-----cHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999 9999999999 9999999999999999999999887766655555544444
Q ss_pred H
Q psy13014 163 L 163 (229)
Q Consensus 163 ~ 163 (229)
.
T Consensus 136 l 136 (142)
T 2xcb_A 136 V 136 (142)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-18 Score=122.37 Aligned_cols=123 Identities=9% Similarity=-0.030 Sum_probs=114.2
Q ss_pred CccchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 3 PLPYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 3 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
+-.|+++++.+|++..+++.+|.++... |++++|...|++++ ...|.++.+++.+|.++...|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~lg~~~~~~g 69 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQS-GXYEDAHXVFQALC----------------VLDHYDSRFFLGLGACRQAMG 69 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHc-CChHHHHHHHHHHH----------------HcCcccHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999 99999999999888 577889999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHH
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRR 153 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 153 (229)
++++|+..|++++.++|++ +.+++++|.+ +..+|++++|+.+|+++++++|+++.....+
T Consensus 70 ~~~~A~~~~~~al~l~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 70 QYDLAIHSYSYGAVMDIXE-----PRFPFHAAEC------LLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp CHHHHHHHHHHHHHHSTTC-----THHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred hHHHHHHHHHHHHhcCCCC-----chHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 9999999999999999999 9999999999 9999999999999999999999877654333
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=136.48 Aligned_cols=184 Identities=12% Similarity=0.086 Sum_probs=156.2
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
.+|....++..+|.++... |++++|...+++++...... .....+..+.++..+|.++...|++++|+.++
T Consensus 64 ~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 134 (311)
T 3nf1_A 64 DHPDVATMLNILALVYRDQ-NKYKDAANLLNDALAIREKT--------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 134 (311)
T ss_dssp SSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3678888999999999999 99999999999887433200 00234778899999999999999999999999
Q ss_pred HHHHHhC-----CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH
Q psy13014 92 NEALRSC-----PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--------NPSYLKVYQRRARLYQ 158 (229)
Q Consensus 92 ~~al~~~-----p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~ 158 (229)
++++.+. +.. .....++..+|.+ +...|++++|+.++++++.+ .|....++..+|.++.
T Consensus 135 ~~a~~~~~~~~~~~~--~~~~~~~~~la~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~ 206 (311)
T 3nf1_A 135 KRALEIREKVLGKDH--PDVAKQLNNLALL------CQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206 (311)
T ss_dssp HHHHHHHHHHHCTTC--HHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC--hHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999984 221 1237889999999 99999999999999999998 6777889999999999
Q ss_pred hcccHHHHHHHHHHHHHh-------------------------------------------------CCCcHHHHHHhcc
Q psy13014 159 QSDKLDEALADYQKILEL-------------------------------------------------DPNNRDAYVATKV 189 (229)
Q Consensus 159 ~~~~~~~A~~~~~~al~~-------------------------------------------------~p~~~~~~~~l~~ 189 (229)
..|++++|+..+++++++ +|....++..++.
T Consensus 207 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 286 (311)
T 3nf1_A 207 KQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286 (311)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 999999999999999984 4667788999999
Q ss_pred CchHHHhhhhhccccccccc-ccCC
Q psy13014 190 SPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
++ ...+++.+|.+.+.+++ +.|.
T Consensus 287 ~~-~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 287 LY-RRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HH-HHHTCHHHHHHHHHHHHHHHC-
T ss_pred HH-HHCCCHHHHHHHHHHHHHHhhc
Confidence 98 88999999999999888 6653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=125.90 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
....++.+|.++... |++++|...|++++ .. .+.+++.+|.++...|++++|+..|++++
T Consensus 5 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~a~----------------~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 5 EAISLWNEGVLAADK-KDWKGALDAFSAVQ----------------DP---HSRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHTSS----------------SC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCHHHHHHHHHHHc----------------CC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455688899999999 99999999998775 11 46799999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH----------------HHHHHHHHHHHh
Q psy13014 96 RSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL----------------KVYQRRARLYQQ 159 (229)
Q Consensus 96 ~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~ 159 (229)
..+|.+ +.++.++|.+ +..+|++++|+.+|++++++.|.+. .+++++|.++..
T Consensus 65 ~~~~~~-----~~~~~~lg~~------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 133 (213)
T 1hh8_A 65 NRDKHL-----AVAYFQRGML------YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 133 (213)
T ss_dssp HHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred HhCccc-----hHHHHHHHHH------HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence 999999 9999999999 9999999999999999999888766 999999999999
Q ss_pred cccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 160 SDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 160 ~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
.|++++|+..|+++++++|++....
T Consensus 134 ~g~~~~A~~~~~~al~~~p~~~~~~ 158 (213)
T 1hh8_A 134 KEEWKKAEEQLALATSMKSEPRHSK 158 (213)
T ss_dssp TTCHHHHHHHHHHHHTTCCSGGGGH
T ss_pred ccCHHHHHHHHHHHHHcCcccccch
Confidence 9999999999999999999875443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=115.74 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
..++.+|..+...|++++|+..|++++..+|++ +.+|+.+|.+ +...|++++|+..|+++++++|+++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER-----EEAWRSLGLT------QAENEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 347889999999999999999999999999999 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
+++.+|.++...|++++|+..|+++++++|++..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999998754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=134.94 Aligned_cols=159 Identities=12% Similarity=0.082 Sum_probs=133.6
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|++..+++.+|.+++.. |++++|...|++++...+.... ..........+..+.++.++|.++..+|++
T Consensus 135 ~~~~a~~~~p~~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~p~~~~-~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 212 (336)
T 1p5q_A 135 SWEMNSEEKLEQSTIVKERGTVYFKE-GKYKQALLQYKKIVSWLEYESS-FSNEEAQKAQALRLASHLNLAMCHLKLQAF 212 (336)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTCCC-CCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHhhcccc-CChHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 46677788999999999999999999 9999999999998843221100 000000112344478999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
++|+.+|++++.++|.+ +.+++++|.+ +..+|++++|+.+|+++++++|++..++..+|.++..+|+++
T Consensus 213 ~~A~~~~~~al~~~p~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 213 SAAIESCNKALELDSNN-----EKGLSRRGEA------HLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999 999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHh
Q psy13014 165 EA-LADYQKILEL 176 (229)
Q Consensus 165 ~A-~~~~~~al~~ 176 (229)
+| ...|++.+..
T Consensus 282 ~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 282 AREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 99 5567766644
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=119.21 Aligned_cols=135 Identities=27% Similarity=0.405 Sum_probs=124.0
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.....+..+..+|..++..|++++|+..|++++..+|.+ ..++.++|.+ +...|++++|+.++++++..
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~a~~~ 76 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-----AIYYGNRSLA------YLRTECYGYALGDATRAIEL 76 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHH------HHHcCCHHHHHHHHHHHHHh
Confidence 345677899999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC--chHHHhhhhhccccccccc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS--PDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~ 209 (229)
+|+++.+++.+|.++...|++++|+.+|+++++++|.+..++..++.+ + ...+++.+|+..+.+..
T Consensus 77 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI-VKQKAFERAIAGDEHKR 144 (166)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHcccchH
Confidence 999999999999999999999999999999999999999988666655 4 56788888888887664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-17 Score=132.63 Aligned_cols=181 Identities=19% Similarity=0.160 Sum_probs=157.8
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSE----------IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEG 75 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 75 (229)
+.++|.+||++..++..++.++..+ +. +.++...++..+ ...|.+..+|...+
T Consensus 53 t~~~L~~nP~~ytaWn~Rr~iL~~l-~~~~~~~~~~~~l~~EL~~~~~~L----------------~~~PKny~aW~hR~ 115 (331)
T 3dss_A 53 TSQILGANPDFATLWNCRREVLQHL-ETEKSPEESAALVKAELGFLESCL----------------RVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHH----------------HHCTTCHHHHHHHH
T ss_pred HHHHHHHCchhHHHHHHHHHHHHHh-cccccchhhhHHHHHHHHHHHHHH----------------HhCCCCHHHHHHHH
Confidence 5678999999999999999999887 65 445555555544 57899999999999
Q ss_pred HHHHHccC--HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCC-hHHHHHHHHHHHhcCCCcHHHHHH
Q psy13014 76 NALFRLNQ--WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEK-PDQSILACSKAITLNPSYLKVYQR 152 (229)
Q Consensus 76 ~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~ 152 (229)
.+....+. +++++.++.+++..+|.+ ..+|.+++.+ ....|. +++++++++++++.+|.|..+|..
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprN-----y~AW~~R~~v------l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~ 184 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERN-----FHCWDYRRFV------AAQAAVAPAEELAFTDSLITRNFSNYSSWHY 184 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999994 999999999999999999 9999999999 888888 599999999999999999999999
Q ss_pred HHHHHHhc--------------ccHHHHHHHHHHHHHhCCCcHHHHHHhccCch----------HHHhhhhhcccccccc
Q psy13014 153 RARLYQQS--------------DKLDEALADYQKILELDPNNRDAYVATKVSPD----------LKLKEKNGATKLSPDV 208 (229)
Q Consensus 153 la~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----------~~~~~~~~a~~~~~~~ 208 (229)
++.++..+ +.++++++++.+++.++|+|..+|..+..++. .+.+.+.++++.+.++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 99999988 67999999999999999999999975554442 1235588899999999
Q ss_pred c-ccCCC
Q psy13014 209 F-LHPGQ 214 (229)
Q Consensus 209 ~-~~p~~ 214 (229)
+ +.|++
T Consensus 265 le~~pd~ 271 (331)
T 3dss_A 265 QELEPEN 271 (331)
T ss_dssp HHHCTTC
T ss_pred HhhCccc
Confidence 9 88876
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=146.05 Aligned_cols=149 Identities=19% Similarity=0.329 Sum_probs=127.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC---------
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC--------- 102 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--------- 102 (229)
+++++|...++..+ ...+..+..+..+|..++..|+|++|+..|++++.++|.+.
T Consensus 248 ~~~~~A~~~~~~~~----------------~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~ 311 (457)
T 1kt0_A 248 KSFEKAKESWEMDT----------------KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311 (457)
T ss_dssp EEEECCCCGGGSCH----------------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHH
T ss_pred hhcccCcchhhcCH----------------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHH
Confidence 45666666665554 56788999999999999999999999999999999999872
Q ss_pred -chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 103 -SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 103 -~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
......+|.++|.| +..+|++++|+.+|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|++.
T Consensus 312 ~~~~~~~~~~nla~~------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 312 SESFLLAAFLNLAMC------YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 11235899999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchHHHhhhhhccc
Q psy13014 182 DAYVATKVSPDLKLKEKNGATK 203 (229)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~a~~ 203 (229)
.++..++.++ .++++..++.+
T Consensus 386 ~a~~~l~~~~-~~~~~~~~a~~ 406 (457)
T 1kt0_A 386 AARLQISMCQ-KKAKEHNERDR 406 (457)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999998 67776655543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=132.38 Aligned_cols=172 Identities=11% Similarity=0.015 Sum_probs=156.5
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH----H
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFS--EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNAL----F 79 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~ 79 (229)
+.++|.+||++..++..++.++..+ + .++++...+++.+ ...|++..+|...+.++ .
T Consensus 56 t~~~L~~nP~~~taWn~R~~~L~~l-~~~~~~eeL~~~~~~L----------------~~nPk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 56 TELGINELASHYTIWIYRFNILKNL-PNRNLYDELDWCEEIA----------------LDNEKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHH----------------HHCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcHHHHHHHHHHHHHHHc-ccccHHHHHHHHHHHH----------------HHCcccHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999 8 8999999998887 67889999999999999 6
Q ss_pred Hc---cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChH--HHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 80 RL---NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD--QSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 80 ~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la 154 (229)
.. +++++++.++++++..+|.+ ..+|.+++.+ ...+|.++ +++++++++++.+|.|..+|..++
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkn-----y~aW~~R~~v------l~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~ 187 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKN-----HHVWSYRKWL------VDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRF 187 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hccccCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 66 78999999999999999999 9999999999 88899988 999999999999999999999999
Q ss_pred HHHHhccc------HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccc
Q psy13014 155 RLYQQSDK------LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSP 206 (229)
Q Consensus 155 ~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 206 (229)
.++...++ ++++++++.+++.++|++..+|..++.++ .+.+....++..+-
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll-~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIH-ERFDRSITQLEEFS 244 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH-HHTTCCGGGGHHHH
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHH-HhcCCChHHHHHHH
Confidence 99999998 99999999999999999999999999888 66666555444333
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=116.20 Aligned_cols=118 Identities=27% Similarity=0.504 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+..+.+++.+|.++...|++++|+..|++++..+|.+ ..++..+|.+ +...|++++|+.+++++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~a~~~ 79 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD-----AKLYSNRAAC------YTKLLEFQLALKDCEECIQL 79 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC-----HHHHHHHHHH------HTTTTCHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHH------HHHhccHHHHHHHHHHHHHh
Confidence 446788899999999999999999999999999999998 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+|+++.+++.+|.++...|++++|+..|+++++.+|.+..++..++.++
T Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCM 128 (133)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998887
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-18 Score=118.02 Aligned_cols=117 Identities=28% Similarity=0.469 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.+..+..++.+|.+++..|++++|+..|++++..+|.+ +.++.++|.+ +..+|++++|+.++++++.++
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~~ 73 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YLKMQQPEQALADCRRALELD 73 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc-----HHHHHHHHHH------HHHhcCHHHHHHHHHHHHHhC
Confidence 34567889999999999999999999999999999999 9999999999 999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-----cHHHHHHhccCc
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN-----NRDAYVATKVSP 191 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~ 191 (229)
|+++.+++.+|.++...|++++|+..|+++++++|+ +..+...+..+.
T Consensus 74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 677777777665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=143.24 Aligned_cols=207 Identities=13% Similarity=0.034 Sum_probs=156.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHH-------HHH--------------HHH-hhhh
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFIL--FSEIRTDCHQFERQVFYIQF-------IFH--------------VLF-YLFC 60 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~-------~~~--------------~~~-~~~~ 60 (229)
.|+++++++|+++.++..+|.++... .++.++|+..+++++...+. ... ... +...
T Consensus 160 ~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a 239 (472)
T 4g1t_A 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239 (472)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 58899999999999999999886655 14456777878776632110 000 000 1122
Q ss_pred hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhh-------------ccC
Q psy13014 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL-------------SLE 127 (229)
Q Consensus 61 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~-------------~~~ 127 (229)
....|..+.++..+|.++...|++++|+..|++++..+|++ +.++.++|.++..++... ..+
T Consensus 240 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~ 314 (472)
T 4g1t_A 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN-----AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314 (472)
T ss_dssp HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHHHHHHHHHHHHC------CHHHHHH
T ss_pred HHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34456778889999999999999999999999999999998 999999999933333211 123
Q ss_pred ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH---HHHHhccCchHHHhhhhhcccc
Q psy13014 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD---AYVATKVSPDLKLKEKNGATKL 204 (229)
Q Consensus 128 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~~~~~a~~~ 204 (229)
.+++|+..++++++++|.+..++..+|.++...|++++|+.+|+++++++|++.. .+..++.+.....++..+|+..
T Consensus 315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~ 394 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHH 394 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999887664 3455665543567788999999
Q ss_pred ccccc-ccCCCcc
Q psy13014 205 SPDVF-LHPGQPQ 216 (229)
Q Consensus 205 ~~~~~-~~p~~~~ 216 (229)
|.+++ ++|++..
T Consensus 395 y~kal~i~~~~~~ 407 (472)
T 4g1t_A 395 FIEGVKINQKSRE 407 (472)
T ss_dssp HHHHHHSCCCCHH
T ss_pred HHHHHhcCcccHH
Confidence 99999 8887654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.3e-18 Score=133.90 Aligned_cols=193 Identities=11% Similarity=0.024 Sum_probs=149.1
Q ss_pred hhcccCCch-HHHHHHHHHHHHHhhhhhhhhHHHHHHH----HHHHHHHHHH----------HHhhhh-hhh--HHHHHH
Q psy13014 8 QELSKNPSF-LYTIYFSCFILFILFSEIRTDCHQFERQ----VFYIQFIFHV----------LFYLFC-SQK--LEQTAI 69 (229)
Q Consensus 8 ~~l~~~p~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~----------~~~~~~-~~~--~~~~~~ 69 (229)
+....+|++ ....+.++.++... |+++.+...++.. +..+..+... +..+.. ... .|+++.
T Consensus 24 ~~~~~~p~~~~e~~~~l~r~yi~~-g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~ 102 (291)
T 3mkr_A 24 RVKPSSPERDVERDVFLYRAYLAQ-RKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102 (291)
T ss_dssp HSCCCSHHHHHHHHHHHHHHHHHT-TCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH
T ss_pred hcccCCchhhHHHHHHHHHHHHHC-CCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH
Confidence 344566766 35777778888888 8888777655221 0111111111 101111 111 367788
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
+++.+|.++...|++++|+..+++ |.+ ..++..+|.+ +..+|++++|+..++++++.+|++...
T Consensus 103 ~~~~la~~~~~~g~~~~Al~~l~~-----~~~-----~~~~~~l~~~------~~~~g~~~~A~~~l~~~~~~~p~~~~~ 166 (291)
T 3mkr_A 103 FLLMAASIYFYDQNPDAALRTLHQ-----GDS-----LECMAMTVQI------LLKLDRLDLARKELKKMQDQDEDATLT 166 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTT-----CCS-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHhC-----CCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHhhCcCcHHH
Confidence 999999999999999999999988 777 9999999999 999999999999999999999998754
Q ss_pred HHHHH--HHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 150 YQRRA--RLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 150 ~~~la--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
....+ .++...|++++|+..|+++++.+|+++.++.++|.++ .+++++.+|...+.+++ ++|++....
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH-MAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 44333 3344569999999999999999999999999999999 89999999999999999 999887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=139.61 Aligned_cols=143 Identities=17% Similarity=0.228 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhH-----------------HHHHhHhhhhhhhHHhh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRA-----------------VFYANRSAALEKLASYL 124 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-----------------~~~~~lg~~~~~~~~~~ 124 (229)
...+..+..+..+|..++..|+|++|+..|++++...|.+ . .++.++|.| +.
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~-----~~~~~~~~~~~~~~~l~~~~~~nla~~------~~ 241 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD-----FMFQLYGKYQDMALAVKNPCHLNIAAC------LI 241 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH-----HHHTCCHHHHHHHHHHHTHHHHHHHHH------HH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-----hhhhhcccHHHHHHHHHHHHHHHHHHH------HH
Confidence 3456788889999999999999999999999999999976 4 489999999 99
Q ss_pred ccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccc
Q psy13014 125 SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKL 204 (229)
Q Consensus 125 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 204 (229)
.+|++++|+.+|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+.....+...++.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999964555567888889
Q ss_pred ccccc-ccCCCc
Q psy13014 205 SPDVF-LHPGQP 215 (229)
Q Consensus 205 ~~~~~-~~p~~~ 215 (229)
|.+++ ..|++.
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 99999 888654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=114.28 Aligned_cols=133 Identities=28% Similarity=0.400 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
.+++.+|.++...|++++|+..+++++...|.+ ..++..+|.+ +...|++++|+..+++++...|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~~~ 70 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-----AEAWYNLGNA------YYKQGDYDEAIEYYQKALELDPRSAE 70 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc-----hhHHHHHHHH------HHHhcCHHHHHHHHHHHHHHCCCchH
Confidence 467889999999999999999999999999998 9999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
+++.+|.++...|++++|+..+++++...|.+..++..++.++ ...++..+|...+.+++ .+|+
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY-YKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999998 88899999999999888 7764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=132.35 Aligned_cols=184 Identities=18% Similarity=0.124 Sum_probs=157.2
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
..+|+...+++.+|.++... |++++|...+++++....... ....+..+.++..+|.++...|++++|+.+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQ-GRYEVAVPLCKQALEDLEKTS--------GHDHPDVATMLNILALVYRDQNKYKDAANL 91 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHH--------CSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45788889999999999999 999999999998874322100 013578889999999999999999999999
Q ss_pred HHHHHHhC-----CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--------CCcHHHHHHHHHHH
Q psy13014 91 YNEALRSC-----PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--------PSYLKVYQRRARLY 157 (229)
Q Consensus 91 ~~~al~~~-----p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~ 157 (229)
+++++... ++. .....++..+|.+ +...|++++|+.++++++++. |....++..+|.++
T Consensus 92 ~~~al~~~~~~~~~~~--~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 92 LNDALAIREKTLGKDH--PAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp HHHHHHHHHHHHCTTC--HHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCC--hHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99999883 111 1237889999999 999999999999999999874 55677899999999
Q ss_pred HhcccHHHHHHHHHHHHHh--------CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 158 QQSDKLDEALADYQKILEL--------DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
...|++++|+..+++++.+ +|....++..++.++ ...+++.+|+..+.+++ ..|
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~ 226 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY-LKQGKFKQAETLYKEILTRAH 226 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 777888999999999 88999999999999888 543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=8.4e-17 Score=109.02 Aligned_cols=114 Identities=26% Similarity=0.394 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+..++.+|..+...|++++|+..|++++..+|.+ +.++..+|.+ +...|++++|+..+++++..+|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-----HVLYSNRSAA------YAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-----HHHHHHHHHH------HHhhccHHHHHHHHHHHHHhCccc
Confidence 45678999999999999999999999999999998 9999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+.+++.+|.++...|++++|+..++++++.+|+++.++..++.+.
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999999999999999999999999999998887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=8e-17 Score=126.01 Aligned_cols=177 Identities=14% Similarity=0.016 Sum_probs=93.9
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH-----HH--------------HHHHhhhhhhhHHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQF-----IF--------------HVLFYLFCSQKLEQTAISLKD 73 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~--------------~~~~~~~~~~~~~~~~~~~~~ 73 (229)
+|+++.+++.+|.++... |++++|..+|++++..... .. ..+.++... ....++.+++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a-~~~~~~~a~~~ 79 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKE-KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA-CDLNYSNGCHL 79 (273)
T ss_dssp ---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred CCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH-HHCCCHHHHHH
Confidence 577888888888888888 8888888888776621000 00 000000000 00113445555
Q ss_pred HHHHHHH----ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc----cCChHHHHHHHHHHHhcCCC
Q psy13014 74 EGNALFR----LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS----LEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 74 ~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~ 145 (229)
+|.++.. .+++++|+..|++++... + +.++.++|.+ +.. .+++++|+.+|+++++.+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-----~~a~~~lg~~------~~~~~~~~~~~~~A~~~~~~a~~~~-- 144 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--Y-----AEGCASLGGI------YHDGKVVTRDFKKAVEYFTKACDLN-- 144 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C-----HHHHHHHHHH------HHHCSSSCCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--C-----ccHHHHHHHH------HHcCCCcccCHHHHHHHHHHHHhcC--
Confidence 5555555 555555555555555542 3 5555555555 555 555555555555555543
Q ss_pred cHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHH----Hhhhhhccccccccc
Q psy13014 146 YLKVYQRRARLYQQ----SDKLDEALADYQKILELDPNNRDAYVATKVSPDLK----LKEKNGATKLSPDVF 209 (229)
Q Consensus 146 ~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~ 209 (229)
++.+++++|.++.. .+++++|+.+|+++++.+ ++.++..++.++ .. .++..+|+..+.+++
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~-~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMY-HHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH-HHTCSSCCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH-HcCCCCCccHHHHHHHHHHHH
Confidence 34555555555555 555555555555555542 345555555555 44 555555555555554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=123.96 Aligned_cols=158 Identities=9% Similarity=0.010 Sum_probs=130.1
Q ss_pred cchhhcccCCchH---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-
Q psy13014 5 PYQQELSKNPSFL---YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR- 80 (229)
Q Consensus 5 ~~~~~l~~~p~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~- 80 (229)
.|+++++.+|+++ .+++.+|.++... |++++|+..|++++... ...+..+.+++.+|.++..
T Consensus 26 ~~~~~~~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~-------------P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 26 QLEALDNRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRLN-------------PTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-------------TTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHC-------------cCCCcHHHHHHHHHHHHHhh
Confidence 4778888888774 6899999999999 99999999999988321 1222334578888888876
Q ss_pred -----------------ccCHHHHHHHHHHHHHhCCCCCchhh------------HHHHHhHhhhhhhhHHhhccCChHH
Q psy13014 81 -----------------LNQWSESLAKYNEALRSCPRSCSVSR------------AVFYANRSAALEKLASYLSLEKPDQ 131 (229)
Q Consensus 81 -----------------~~~~~~A~~~~~~al~~~p~~~~~~~------------~~~~~~lg~~~~~~~~~~~~~~~~~ 131 (229)
.|++++|+..|++++..+|++..... ......+|.+ ++..|++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~------~~~~~~~~~ 165 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEY------YTERGAWVA 165 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHTCHHH
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHcCcHHH
Confidence 67999999999999999999832110 1122567888 999999999
Q ss_pred HHHHHHHHHhcCCCcH---HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 132 SILACSKAITLNPSYL---KVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 132 A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
|+..|+++++..|+++ .+++.+|.++..+|++++|+..++.+....|++.+
T Consensus 166 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 166 VVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999999986 68999999999999999999999999999988653
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=124.64 Aligned_cols=187 Identities=11% Similarity=0.072 Sum_probs=150.9
Q ss_pred chhhcccCCchHHHHHHHHHHHHH----hhhhhhhhHHHHHHHHHHHH-----HHHH--------------HHHhhhhhh
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFI----LFSEIRTDCHQFERQVFYIQ-----FIFH--------------VLFYLFCSQ 62 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~~-----~~~~--------------~~~~~~~~~ 62 (229)
|+++++ |+++.+++.+|.++.. . +++++|..+|++++..-. .... .+.++...
T Consensus 29 ~~~a~~--~~~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a- 104 (273)
T 1ouv_A 29 FEKACD--LKENSGCFNLGVLYYQGQGVE-KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA- 104 (273)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH-
T ss_pred HHHHHH--CCCHHHHHHHHHHHHcCCCcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHH-
Confidence 455555 6777888888888887 7 888888888877653210 0000 00011100
Q ss_pred hHHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc----cCChHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFR----LNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS----LEKPDQSIL 134 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~~~~A~~ 134 (229)
....++.+++.+|.++.. .+++++|+.+|++++... + +.++.++|.+ +.. .+++++|+.
T Consensus 105 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~-----~~a~~~lg~~------~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 105 CDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D-----GDGCTILGSL------YDAGRGTPKDLKKALA 171 (273)
T ss_dssp HHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C-----HHHHHHHHHH------HHHTSSSCCCHHHHHH
T ss_pred HHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c-----HHHHHHHHHH------HHcCCCCCCCHHHHHH
Confidence 111367899999999999 999999999999999976 4 8899999999 988 999999999
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHH----Hhhhhhcccccc
Q psy13014 135 ACSKAITLNPSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDPNNRDAYVATKVSPDLK----LKEKNGATKLSP 206 (229)
Q Consensus 135 ~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~~a~~~~~ 206 (229)
+|+++++. +++.+++.+|.++.. .+++++|+.+|+++++.+| +.++..++.++ .. .++..+|++.+.
T Consensus 172 ~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~-~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 172 SYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ-YNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH-HTTSSSSCCSTTHHHHHH
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH-HcCCCcccCHHHHHHHHH
Confidence 99999987 468999999999999 9999999999999999977 88999999998 77 888999999999
Q ss_pred ccc-ccCCC
Q psy13014 207 DVF-LHPGQ 214 (229)
Q Consensus 207 ~~~-~~p~~ 214 (229)
+++ +.|.+
T Consensus 247 ~a~~~~~~~ 255 (273)
T 1ouv_A 247 KGCKLGAKG 255 (273)
T ss_dssp HHHHHTCHH
T ss_pred HHHHcCCHH
Confidence 999 88754
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=123.39 Aligned_cols=133 Identities=21% Similarity=0.231 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
....++.+|..+...|++++|+..|++++ .| + +.++.++|.+ +...|++++|+.+|++++.++|++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~ 70 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-H-----SRICFNIGCM------YTILKNMTEAEKAFTRSINRDKHL 70 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C-----hHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCccc
Confidence 44567899999999999999999999995 34 5 8899999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH----------------HHHHHhccCchHHHhhhhhccccccccc-
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNR----------------DAYVATKVSPDLKLKEKNGATKLSPDVF- 209 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~l~~~~~~~~~~~~~a~~~~~~~~- 209 (229)
+.+++++|.++...|++++|+..|++++++.|.+. .++.++|.++ ...+++.+|...+.+++
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY-AKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHH-HHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888877 9999999999 88999999999999999
Q ss_pred ccCCC
Q psy13014 210 LHPGQ 214 (229)
Q Consensus 210 ~~p~~ 214 (229)
++|++
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 88854
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.2e-17 Score=133.78 Aligned_cols=175 Identities=11% Similarity=0.072 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.++.+|.++... |++++|...|++++.... .....+..+.++..+|.++...|++++|+.++++++.+.
T Consensus 105 ~~~~~g~~~~~~-g~~~~A~~~~~~al~~~~----------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 173 (383)
T 3ulq_A 105 FNFFRGMYELDQ-REYLSAIKFFKKAESKLI----------FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY 173 (383)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTGG----------GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCHHHHHHHHHHHHHHHh----------hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 455689999999 999999999998873211 112356788999999999999999999999999999997
Q ss_pred CCCC--chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 99 PRSC--SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY------LKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 99 p~~~--~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+... ....+.++.++|.+ +..+|++++|+.++++++.+.+.. ..++.++|.++..+|++++|+.++
T Consensus 174 ~~~~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 174 KEHEAYNIRLLQCHSLFATN------FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HTCSTTHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6553 23357789999999 999999999999999999885432 358999999999999999999999
Q ss_pred HHHHH-----hC-CCcHHHHHHhccCchHHHhhhhhccccccccc-cc
Q psy13014 171 QKILE-----LD-PNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LH 211 (229)
Q Consensus 171 ~~al~-----~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~ 211 (229)
+++++ .+ |....++.++|.++ .+.+++.+|...+.+++ +.
T Consensus 248 ~~al~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 248 KRAIAVFEESNILPSLPQAYFLITQIH-YKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHH
Confidence 99999 56 88889999999999 88999999999999887 54
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-16 Score=112.05 Aligned_cols=134 Identities=11% Similarity=0.101 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
+....++.+|.++... |++++|...|++++ ...|.++.++..+|.++...|++++|+..++++
T Consensus 11 ~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al----------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 11 KRAEELKTQANDYFKA-KDYENAIKFYSQAI----------------ELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-cCHHHHHHHHHHHH----------------HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3467789999999999 99999999999888 456777889999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH--HHHhcccHHHHHHHHHH
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR--LYQQSDKLDEALADYQK 172 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~~~~~~A~~~~~~ 172 (229)
+..+|.+ +.++..+|.+ +..+|++++|+.+++++++++|.+..++..++. .+...|++++|+..+.+
T Consensus 74 ~~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 74 IELDKKY-----IKGYYRRAAS------NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCccc-----HHHHHHHHHH------HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999 9999999999 999999999999999999999999988855544 48889999999999988
Q ss_pred HHHh
Q psy13014 173 ILEL 176 (229)
Q Consensus 173 al~~ 176 (229)
+..+
T Consensus 143 ~~~~ 146 (166)
T 1a17_A 143 KRSV 146 (166)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=140.67 Aligned_cols=130 Identities=28% Similarity=0.437 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
+..+..+..+|..+...|++++|+..|+++++++|.+ +.++.++|.+ +..+|++++|+.+++++++++|
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~l~p 71 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-----AIYYGNRSLA------YLRTECYGYALGDATRAIELDK 71 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHSCT
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHH------HHHhcCHHHHHHHHHHHHHhCC
Confidence 4556678889999999999999999999999999999 9999999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC--chHHHhhhhhcccccc
Q psy13014 145 SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS--PDLKLKEKNGATKLSP 206 (229)
Q Consensus 145 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~a~~~~~ 206 (229)
+++.+++++|.++..+|++++|+..|+++++++|++..++..++.+ + .+.+++.+|++.+.
T Consensus 72 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 72 KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI-VKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHH-HHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999988 5 67788999999998
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-16 Score=106.17 Aligned_cols=114 Identities=30% Similarity=0.423 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+..++.+|.++...|++++|+..|++++...|.+ ..++..+|.+ +...|++++|+..+++++..+|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----AEAWYNLGNA------YYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-----HHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhCCcc
Confidence 46789999999999999999999999999999998 9999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+.++..+|.++...|++++|+..++++++.+|+++.++..++.++
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988776
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-17 Score=120.23 Aligned_cols=142 Identities=8% Similarity=-0.019 Sum_probs=121.8
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-HHccC
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNAL-FRLNQ 83 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~ 83 (229)
.|+++++.+|+++.+++.+|.++... |++++|...+++++ ...| ++......+.+. ...+.
T Consensus 28 ~~~~al~~~P~~~~a~~~la~~~~~~-g~~~~A~~~~~~a~----------------~~~p-~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 28 VIQTLSDELQSRGDVKLAKADCLLET-KQFELAQELLATIP----------------LEYQ-DNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHTSCHHHHTSHHHHHHHHHHHHHT-TCHHHHHHHHTTCC----------------GGGC-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHC-CCHHHHHHHHHHhh----------------hccC-ChHHHHHHHHHHHHhhcc
Confidence 47889999999999999999999999 99999999998876 3334 444444444332 23334
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhcc
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY--LKVYQRRARLYQQSD 161 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~ 161 (229)
..+|+..+++++..+|++ +.+++++|.+ +...|++++|+..|+++++.+|+. +.++..+|.++..+|
T Consensus 90 ~~~a~~~~~~al~~~P~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 90 ESPELKRLEQELAANPDN-----FELACELAVQ------YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp SCHHHHHHHHHHHHSTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 456899999999999999 9999999999 999999999999999999999976 669999999999999
Q ss_pred cHHHHHHHHHHHHH
Q psy13014 162 KLDEALADYQKILE 175 (229)
Q Consensus 162 ~~~~A~~~~~~al~ 175 (229)
+.++|+..|++++.
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999999875
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=130.97 Aligned_cols=131 Identities=27% Similarity=0.403 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hCCCCCchhhHHHHHhHhhhhhhhHHhhcc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALR----------------SCPRSCSVSRAVFYANRSAALEKLASYLSL 126 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~ 126 (229)
.....+..+..+|..++..|++++|+..|++++. .+|.. ..++.++|.+ +..+
T Consensus 218 ~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~nla~~------~~~~ 286 (370)
T 1ihg_A 218 KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA-----LSCVLNIGAC------KLKM 286 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH-----HHHHHHHHHH------HHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH-----HHHHHHHHHH------HHhc
Confidence 3446677899999999999999999999999999 55555 8999999999 9999
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccc
Q psy13014 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLS 205 (229)
Q Consensus 127 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 205 (229)
|++++|+.+++++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..++.++ ..+++..++.+..
T Consensus 287 g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~-~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK-QKIKAQKDKEKAA 364 (370)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 6777766665443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-17 Score=117.83 Aligned_cols=134 Identities=16% Similarity=0.162 Sum_probs=117.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhH
Q psy13014 28 FILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRA 107 (229)
Q Consensus 28 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 107 (229)
... |++++|...+++++ ...|.++.+++.+|.++...|++++|+.+|++++.++|.+ +
T Consensus 21 ~~~-~~~~~A~~~~~~al----------------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~ 78 (177)
T 2e2e_A 21 ASQ-QNPEAQLQALQDKI----------------RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN-----A 78 (177)
T ss_dssp C------CCCCHHHHHHH----------------HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC-----H
T ss_pred hhc-cCHHHHHHHHHHHH----------------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----H
Confidence 345 88899999998887 5667788999999999999999999999999999999998 9
Q ss_pred HHHHhHhhhhhhhHHhh-ccCCh--HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 108 VFYANRSAALEKLASYL-SLEKP--DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~-~~~~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
.++..+|.+ +. ..|++ ++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|++....
T Consensus 79 ~~~~~la~~------l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 79 ELYAALATV------LYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHH------HHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHH------HHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 999999988 54 78998 9999999999999999999999999999999999999999999999999987665
Q ss_pred HHhcc
Q psy13014 185 VATKV 189 (229)
Q Consensus 185 ~~l~~ 189 (229)
..+..
T Consensus 153 ~~~~~ 157 (177)
T 2e2e_A 153 QLVES 157 (177)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-17 Score=132.27 Aligned_cols=156 Identities=11% Similarity=0.018 Sum_probs=131.0
Q ss_pred chhhccc------CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy13014 6 YQQELSK------NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALF 79 (229)
Q Consensus 6 ~~~~l~~------~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (229)
|+++++. .+....+++.+|.++... |+++.|..++.+++...+. .....+..+.++..+|.++.
T Consensus 126 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~---------~~~~~~~~~~~~~~lg~~~~ 195 (383)
T 3ulq_A 126 FKKAESKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKE---------HEAYNIRLLQCHSLFATNFL 195 (383)
T ss_dssp HHHHHTTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHT---------CSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh---------CccchHHHHHHHHHHHHHHH
Confidence 4556654 334568899999999999 9999999999988744321 00115677889999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh-----cC-CCcHHHHHH
Q psy13014 80 RLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT-----LN-PSYLKVYQR 152 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~ 152 (229)
..|++++|+.+|++++.+.+.... ...+.++.++|.+ +..+|++++|+.++++++. .+ |..+.++.+
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLC------KNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999999999999999998765432 2346789999999 9999999999999999999 56 888999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 153 RARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 153 la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
+|.++..+|++++|+.++++++++.
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~ 294 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYS 294 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999884
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.4e-17 Score=128.21 Aligned_cols=140 Identities=27% Similarity=0.427 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+..+..+|..++..|++++|+..|++++..+|.+ +.++.++|.+ +..+|++++|+..++++++++|++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHH------HHHhcCHHHHHHHHHHHHHhCCCC
Confidence 35678899999999999999999999999999999 9999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH-----HHHHHhccCch-----------------------HHHhhh
Q psy13014 147 LKVYQRRARLYQQSDKLDEALADYQKILELDPNNR-----DAYVATKVSPD-----------------------LKLKEK 198 (229)
Q Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~-----------------------~~~~~~ 198 (229)
+.+++++|.++..+|++++|+..|+++++++|+++ .++..+..... ...++.
T Consensus 72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 151 (281)
T 2c2l_A 72 VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAER 151 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998763 12221111100 134567
Q ss_pred hhccccccccc-ccCCCccc
Q psy13014 199 NGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 199 ~~a~~~~~~~~-~~p~~~~~ 217 (229)
.+|++.+.+++ ++|++..+
T Consensus 152 ~~A~~~~~~al~~~p~~~~~ 171 (281)
T 2c2l_A 152 ERELEECQRNHEGHEDDGHI 171 (281)
T ss_dssp HHHHTTTSGGGTTTSCHHHH
T ss_pred HHHHHHHHhhhccccchhhh
Confidence 88999999998 88865443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=108.96 Aligned_cols=115 Identities=10% Similarity=0.024 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc--
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY-- 146 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-- 146 (229)
..++.+|..++..|++++|+..|++++..+|++.. .+.+++.+|.+ +...|++++|+..|++++..+|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~lg~~------~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY--TPNALYWLGES------YYATRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT--HHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc--cHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHCCCCcc
Confidence 35678999999999999999999999999998710 12799999999 999999999999999999999999
Q ss_pred -HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 147 -LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 147 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+.+++.+|.++..+|++++|+..|++++..+|+++.+......+.
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 899999999999999999999999999999999998877665543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-16 Score=107.90 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=110.4
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|.....++.+|..++.. |++++|...|++++ ...|.++.++..+|.++...|++++|+..|++
T Consensus 1 p~~a~~~~~~g~~~~~~-~~~~~A~~~~~~al----------------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTK-SDWPNAVKAYTEMI----------------KRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63 (126)
T ss_dssp CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHh-cCHHHHHHHHHHHH----------------HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 56778899999999999 99999999999988 56788899999999999999999999999999
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHh
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQ 159 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~ 159 (229)
++.++|.+ +.+++++|.+ +..+|++++|+.+|+++++++ |++..++..++.+...
T Consensus 64 al~~~p~~-----~~~~~~lg~~------~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 64 AIEKDPNF-----VRAYIRKATA------QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHhCCCc-----HHHHHHHHHH------HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999 9999999999 999999999999999999999 9999998888877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=108.45 Aligned_cols=119 Identities=24% Similarity=0.366 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..+..++.+|..+...|++++|+..|++++..+|.+ +.++..+|.+ +...|++++|+.++++++...|.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~~~ 70 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-----MTYITNQAAV------YFEKGDYNKCRELCEKAIEVGRE 70 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-----HHHHHHHHHH------HHHhccHHHHHHHHHHHHhhccc
Confidence 456788999999999999999999999999999998 9999999999 99999999999999999999887
Q ss_pred c-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 146 Y-------LKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 146 ~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
+ +.+++.+|.++...|++++|+..|+++++.+| ++.....++.+. ..+++
T Consensus 71 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~-~~~~~ 127 (131)
T 1elr_A 71 NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE-KILKE 127 (131)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH-HHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH-HHHHH
Confidence 7 89999999999999999999999999999999 588888888776 44433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=108.11 Aligned_cols=126 Identities=12% Similarity=0.105 Sum_probs=116.7
Q ss_pred cccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy13014 10 LSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLA 89 (229)
Q Consensus 10 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 89 (229)
.+.+|++...++.+|.++... |++++|...+++++ ...|.++.++..+|.++...|++++|+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 67 (131)
T 2vyi_A 5 SEEDSAEAERLKTEGNEQMKV-ENFEAAVHFYGKAI----------------ELNPANAVYFCNRAAAYSKLGNYAGAVQ 67 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhcchhhhHHHHHHHHHHHHc-cCHHHHHHHHHHHH----------------HcCCCCHHHHHHHHHHHHHhhchHHHHH
Confidence 456788899999999999999 99999999999887 4556678899999999999999999999
Q ss_pred HHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH
Q psy13014 90 KYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 90 ~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 163 (229)
.+++++..+|.+ +.++..+|.+ +...|++++|+.+++++++.+|++..++..+|.++..+|++
T Consensus 68 ~~~~~~~~~~~~-----~~~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 68 DCERAICIDPAY-----SKAYGRMGLA------LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCccC-----HHHHHHHHHH------HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999998 9999999999 99999999999999999999999999999999999998875
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-17 Score=136.46 Aligned_cols=190 Identities=14% Similarity=0.068 Sum_probs=156.8
Q ss_pred cchhhcccCCchH----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFL----YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR 80 (229)
Q Consensus 5 ~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (229)
.|+++++.+|+++ .+++.+|.++... |++++|...+++++.... .....+..+.++..+|.++..
T Consensus 70 ~~~~al~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~----------~~~~~~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 70 FFQAAIQAGTEDLRTLSAIYSQLGNAYFYL-GDYNKAMQYHKHDLTLAK----------SMNDRLGEAKSSGNLGNTLKV 138 (411)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccChhHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH----------HccCchHHHHHHHHHHHHHHH
Confidence 4677888888887 4788889999988 999999999988874322 112357888999999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCC-----------------hHHHHHHHHHHHhc
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEK-----------------PDQSILACSKAITL 142 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~-----------------~~~A~~~~~~al~~ 142 (229)
.|++++|+.+|++++.+.+.... .....++.++|.+ +...|+ +++|+.++++++.+
T Consensus 139 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 139 MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNV------YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH------HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998432111 1237899999999 999999 99999999999886
Q ss_pred C------CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH------HHHHhccCchHHHhhhhhccccccccc-
Q psy13014 143 N------PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD------AYVATKVSPDLKLKEKNGATKLSPDVF- 209 (229)
Q Consensus 143 ~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~a~~~~~~~~- 209 (229)
. +....++..+|.++...|++++|+.++++++++.|.... ++..++.++ ...+++.+|+..+.+++
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH-IFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHCcCHHHHHHHHHHHHH
Confidence 3 334568999999999999999999999999999876554 888999988 88889999999998887
Q ss_pred ccC
Q psy13014 210 LHP 212 (229)
Q Consensus 210 ~~p 212 (229)
+.|
T Consensus 292 ~~~ 294 (411)
T 4a1s_A 292 LAV 294 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-17 Score=128.25 Aligned_cols=184 Identities=14% Similarity=0.075 Sum_probs=145.5
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|++...++.+|..++.. |++++|...|++++ ...|.++.++..+|.++...|++++|+..+++
T Consensus 1 p~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVG-RKYPEAAACYGRAI----------------TRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63 (281)
T ss_dssp CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 67788999999999999 99999999999988 56678889999999999999999999999999
Q ss_pred HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH-----HHHH-----------------
Q psy13014 94 ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL-----KVYQ----------------- 151 (229)
Q Consensus 94 al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~----------------- 151 (229)
++.++|++ ..+++++|.+ +..+|++++|+..|+++++++|++. ..+.
T Consensus 64 al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (281)
T 2c2l_A 64 ALELDGQS-----VKAHFFLGQC------QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 132 (281)
T ss_dssp HTTSCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999 9999999999999999999988652 1111
Q ss_pred ---------HHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc------------c
Q psy13014 152 ---------RRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF------------L 210 (229)
Q Consensus 152 ---------~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~------------~ 210 (229)
.++.. ..|++++|++.++++++.+|++......++.+.....+.+.++.+.|.++. .
T Consensus 133 ~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~~~~~~ 210 (281)
T 2c2l_A 133 IHQESELHSYLTRL--IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLC 210 (281)
T ss_dssp CCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCCCSTTB
T ss_pred HhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCcccC
Confidence 11221 368999999999999999999988888887766322243444544443332 1
Q ss_pred cCCCcccccCCCCcCCC
Q psy13014 211 HPGQPQIQHNPETIHGG 227 (229)
Q Consensus 211 ~p~~~~~~~~~~~~~~~ 227 (229)
-|--..+..+|..+..|
T Consensus 211 c~i~~~~~~dPv~~~~g 227 (281)
T 2c2l_A 211 GKISFELMREPCITPSG 227 (281)
T ss_dssp CTTTCSBCSSEEECSSC
T ss_pred CcCcCCHhcCCeECCCC
Confidence 22333455566665554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=120.30 Aligned_cols=168 Identities=11% Similarity=-0.019 Sum_probs=145.8
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc---
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN--- 82 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 82 (229)
|+++.+ ..++.+++.+|.++... +++++|..+|+++.. ..++.+++.+|.++.. +
T Consensus 9 ~~~aa~--~g~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~------------------~g~~~a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 9 YQQQAE--AGDRRAQYYLADTWVSS-GDYQKAEYWAQKAAA------------------QGDGDALALLAQLKIR-NPQQ 66 (212)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH------------------TTCHHHHHHHHHHTTS-STTS
T ss_pred HHHHHH--CCCHHHHHHHHHHHhcC-CCHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHc-CCCC
Confidence 455554 47899999999999998 999999999998861 2467889999999998 7
Q ss_pred -CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc----cCChHHHHHHHHHHHhcCC--CcHHHHHHHHH
Q psy13014 83 -QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS----LEKPDQSILACSKAITLNP--SYLKVYQRRAR 155 (229)
Q Consensus 83 -~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~la~ 155 (229)
++++|+..|+++.. +.+ +.+++++|.+ |.. .+++++|+.+|+++++..| .++.+++++|.
T Consensus 67 ~~~~~A~~~~~~A~~--~g~-----~~a~~~Lg~~------y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 67 ADYPQARQLAEKAVE--AGS-----KSGEIVLARV------LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133 (212)
T ss_dssp CCHHHHHHHHHHHHH--TTC-----HHHHHHHHHH------HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--CCC-----HHHHHHHHHH------HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 89999999999976 456 9999999999 988 8999999999999999988 45999999999
Q ss_pred HHHh----cccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHh-----hhhhccccccccc
Q psy13014 156 LYQQ----SDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLK-----EKNGATKLSPDVF 209 (229)
Q Consensus 156 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-----~~~~a~~~~~~~~ 209 (229)
+|.. .+++++|+.+|+++++. |.++.+.++++.++....+ +..+|++.|.++.
T Consensus 134 ~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 134 IYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 9999 88999999999999999 7778899999999843222 6888888887776
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-17 Score=137.56 Aligned_cols=181 Identities=15% Similarity=0.046 Sum_probs=153.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHH-------hhhhhh-------hhHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFI-------LFSEIR-------TDCHQFERQVFYIQFIFHVLFYLFCSQ-KLEQTAI 69 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~-------~~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 69 (229)
.|++++..+|+++.+++..|.++.. . |+++ +|...|++++ . ..|+...
T Consensus 260 ~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~A~~~~~~Al----------------~~~~p~~~~ 322 (530)
T 2ooe_A 260 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK-GDMNNAKLFSDEAANIYERAI----------------STLLKKNML 322 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHT----------------TTTCSSCHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhc-cchhhhhhhhHHHHHHHHHHH----------------HHhCcccHH
Confidence 5889999999999999999998876 5 8876 7888888776 3 3577888
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhH-HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRA-VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
+|..+|..+...|++++|...|++++...|.+ + .+|..+|.+ +...|++++|+..|+++++..|....
T Consensus 323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~------~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKF------ARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-----HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhCccccC-----chHHHHHHHHH------HHHhcCHHHHHHHHHHHHhccCCchH
Confidence 99999999999999999999999999999887 5 589999999 88888899999999999998888777
Q ss_pred HHHHHHHH-HHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 149 VYQRRARL-YQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 149 ~~~~la~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
.+...+.+ +...|++++|...|+++++..|+++.++..++.+. .+.++..+|...|.+++ ..|.+
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~-~~~g~~~~Ar~~~~~al~~~~~~ 458 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL-SHLNEDNNTRVLFERVLTSGSLP 458 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-TTTTCHHHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH-HhCCCHhhHHHHHHHHHhccCCC
Confidence 77666655 34588999999999999999999999998888887 67788888888888888 55543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=128.90 Aligned_cols=176 Identities=12% Similarity=0.031 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.++.+|..+... |++++|...|++++.... .....+..+.+++.+|.++...|++++|+.++++++.+.
T Consensus 103 ~~~~~g~~~~~~-g~~~~A~~~~~~al~~~~----------~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 103 SLFFRGMYEFDQ-KEYVEAIGYYREAEKELP----------FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHTTGG----------GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCHHHHHHHHHHHHHHHh----------hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 577889999999 999999999998873211 113457888999999999999999999999999999987
Q ss_pred CCCCc--hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 99 PRSCS--VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP------SYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 99 p~~~~--~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+.... ...+.++.++|.+ +..+|++++|+.++++++.+.+ ....++.++|.++...|++++|+.+|
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGN------YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 65432 2357889999999 9999999999999999998742 12468999999999999999999999
Q ss_pred HHHHH-----hCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 171 QKILE-----LDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 171 ~~al~-----~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
+++++ .+|....++.++|.++ .+.++..+|...+.+++ +.+
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTL-CKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
Confidence 99999 8888899999999999 89999999999999988 544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-16 Score=125.40 Aligned_cols=144 Identities=6% Similarity=-0.038 Sum_probs=133.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|+++.+++.+|.++... |++++|...+++++ ...|.........+..+...++.
T Consensus 139 ~~~~al~~~P~~~~a~~~la~~~~~~-g~~~~A~~~l~~~~----------------~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 139 LLXDAWQLSNQNGEIGLLLAETLIAL-NRSEDAEAVLXTIP----------------LQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHT-TCHHHHHHHHTTSC----------------GGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHHC-CCHHHHHHHHHhCc----------------hhhcchHHHHHHHHHHHHhhccc
Confidence 47889999999999999999999999 99999999998876 45566667777888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHhccc
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY--LKVYQRRARLYQQSDK 162 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~ 162 (229)
.+|+..+++++..+|++ +.+++++|.+ +...|++++|+..|.+++..+|++ ..++.+++.++..+|+
T Consensus 202 ~~a~~~l~~al~~~P~~-----~~~~~~la~~------l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 202 TPEIQQLQQQVAENPED-----AALATQLALQ------LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp CHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred CccHHHHHHHHhcCCcc-----HHHHHHHHHH------HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 99999999999999999 9999999999 999999999999999999999998 8899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy13014 163 LDEALADYQKILEL 176 (229)
Q Consensus 163 ~~~A~~~~~~al~~ 176 (229)
.++|+..|++++..
T Consensus 271 ~~~a~~~~r~al~~ 284 (287)
T 3qou_A 271 GDALASXYRRQLYA 284 (287)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 99999999998753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-17 Score=133.36 Aligned_cols=190 Identities=13% Similarity=0.072 Sum_probs=159.0
Q ss_pred cchhhcccCCchH----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFL----YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR 80 (229)
Q Consensus 5 ~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (229)
.|+++++.+|+++ .+++.+|.++... |++++|...+++++.... .....+..+.++..+|.++..
T Consensus 31 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~----------~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 31 FFEAAVQVGTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLAR----------TIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH----------hccccHHHHHHHHHHHHHHHH
Confidence 4678888899884 5788899999999 999999999988874322 112457778899999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCC--------------------hHHHHHHHHHH
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEK--------------------PDQSILACSKA 139 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~--------------------~~~A~~~~~~a 139 (229)
.|++++|+.++++++.+.|.... .....++..+|.+ +...|+ +++|+.++.++
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH------HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998765322 2246689999999 999999 99999999999
Q ss_pred Hhc------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH------HHHHhccCchHHHhhhhhccccccc
Q psy13014 140 ITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD------AYVATKVSPDLKLKEKNGATKLSPD 207 (229)
Q Consensus 140 l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~a~~~~~~ 207 (229)
+.+ .|....++..+|.++...|++++|+..+++++++.|.... ++..++.++ ...+++.+|+..+.+
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY-IFLGEFETASEYYKK 252 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHH
Confidence 887 3445678999999999999999999999999998766554 888999998 888999999999988
Q ss_pred cc-ccC
Q psy13014 208 VF-LHP 212 (229)
Q Consensus 208 ~~-~~p 212 (229)
++ +.|
T Consensus 253 al~~~~ 258 (406)
T 3sf4_A 253 TLLLAR 258 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 87 555
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=112.65 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=92.1
Q ss_pred HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCC----------hHHHHHHHHHHHhcCCCcHH
Q psy13014 79 FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEK----------PDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~----------~~~A~~~~~~al~~~p~~~~ 148 (229)
-+.+.|++|+..+++++.++|++ +.+|.++|.+ +..+++ +++|+..|+++|+++|++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~-----aea~~n~G~~------l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~ 81 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD-----ADNLTRWGGV------LLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH
Confidence 35678999999999999999999 9999999999 666655 56999999999999999999
Q ss_pred HHHHHHHHHHhcc-----------cHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 149 VYQRRARLYQQSD-----------KLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 149 ~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+|+++|.+|..+| ++++|+.+|++|++++|++...+..+..+-
T Consensus 82 A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999885 899999999999999999998887776553
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-16 Score=130.58 Aligned_cols=152 Identities=9% Similarity=0.054 Sum_probs=124.4
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+.+++.+|+....+..+|.+++.. |++++|+..|++++...+..... .........+....++.++|.++..+|++
T Consensus 256 ~~~~~~~~~~~~a~~~~~~G~~~~~~-g~~~~A~~~y~~Al~~~p~~~~~-~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 333 (457)
T 1kt0_A 256 SWEMDTKEKLEQAAIVKEKGTVYFKG-GKYMQAVIQYGKIVSWLEMEYGL-SEKESKASESFLLAAFLNLAMCYLKLREY 333 (457)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCCSC-CHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcccccC-ChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 45667788899999999999999999 99999999999988433211000 00000112344578999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
++|+.+|++++.++|++ +.+++++|.+ +..+|++++|+.+|+++++++|++..++..++.++..+++++
T Consensus 334 ~~A~~~~~~al~~~p~~-----~~a~~~~g~a------~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 334 TKAVECCDKALGLDSAN-----EKGLYRRGEA------QLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp HHHHHHHHHHHHHSTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcc-----HHHHHHHHHH------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy13014 165 EALAD 169 (229)
Q Consensus 165 ~A~~~ 169 (229)
+|...
T Consensus 403 ~a~~~ 407 (457)
T 1kt0_A 403 ERDRR 407 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.8e-16 Score=106.36 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=117.4
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESL 88 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 88 (229)
.....|.+..+++.+|.++... |++++|...|++++ ...|.++.++..+|.++...|++++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al----------------~~~~~~~~~~~~la~~~~~~~~~~~A~ 70 (133)
T 2lni_A 8 HSHMNPDLALMVKNKGNECFQK-GDYPQAMKHYTEAI----------------KRNPKDAKLYSNRAACYTKLLEFQLAL 70 (133)
T ss_dssp TCCSSSCHHHHHHHHHHHHHHT-TCSHHHHHHHHHHH----------------TTCTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred CCCcCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HcCCCcHHHHHHHHHHHHHhccHHHHH
Confidence 3456788999999999999999 99999999999888 566777899999999999999999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
..+++++..+|.+ +.++..+|.+ +...|++++|+.++++++..+|.+..++..++.++...|+
T Consensus 71 ~~~~~a~~~~~~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 71 KDCEECIQLEPTF-----IKGYTRKAAA------LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCc-----hHHHHHHHHH------HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999998 9999999999 9999999999999999999999999999999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.4e-17 Score=118.97 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=116.5
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH-
Q psy13014 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL- 156 (229)
Q Consensus 78 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~- 156 (229)
+...|++++|+..+++++..+|.+ +.++..+|.+ +...|++++|+.+|+++++++|+++.++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l 88 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN-----SEQWALLGEY------YLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456789999999999999999999 9999999999 9999999999999999999999999999999999
Q ss_pred HHhcccH--HHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 157 YQQSDKL--DEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 157 ~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+...|++ ++|+..++++++.+|++..++..++.++ ...+++.+|+..+.+++ ++|++..
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA-FMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8899999 9999999999999999999999999999 88999999999999999 9987643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-16 Score=112.16 Aligned_cols=121 Identities=10% Similarity=-0.028 Sum_probs=111.7
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
..++.+...++.+|.+++.. |++++|+..|++++ ...|.++.+++.+|.++...|++++|+..
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 67 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMAR-KEYSKAIDLYTQAL----------------SIAPANPIYLSNRAAAYSASGQHEKAAED 67 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCcCHHHHHHHHHHHHHccCHHHHHHH
Confidence 45778899999999999999 99999999999988 56678899999999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 159 (229)
|++++.++|.+ +.+++++|.+ +..+|++++|+.+|+++++++|++..+++.++.....
T Consensus 68 ~~~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 68 AELATVVDPKY-----SKAWSRLGLA------RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-----HHHHHHHHHH------HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 99999999999 9999999999 9999999999999999999999999887777765443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.3e-16 Score=108.87 Aligned_cols=120 Identities=30% Similarity=0.398 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.+..+..++.+|..++..|++++|+..|++++..+|++ .....++.++|.+ +...|++++|+..+++++.++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~ 95 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP--QDQAVLHRNRAAC------HLKLEDYDKAETEASKAIEKD 95 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH--HHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc--hHHHHHHHHHHHH------HHHHccHHHHHHHHHHHHhhC
Confidence 45677889999999999999999999999999999863 1236889999999 999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|+++.+++.+|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus 96 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 96 GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988777654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-16 Score=126.21 Aligned_cols=149 Identities=11% Similarity=-0.037 Sum_probs=126.6
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|....+++.+|.++... |++..|..++++++...+.. ....+..+.++..+|.++...|++++|+.+|++
T Consensus 138 ~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 207 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQNH---------PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEA 207 (378)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTS---------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhC---------CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34567899999999999 99999999999887443200 011346788999999999999999999999999
Q ss_pred HHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHhcccHHHHH
Q psy13014 94 ALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT-----LNPSYLKVYQRRARLYQQSDKLDEAL 167 (229)
Q Consensus 94 al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~~~~~~A~ 167 (229)
++.+.+.... .....++.++|.+ +..+|++++|+.++++++. .+|..+.+++++|.++...|++++|+
T Consensus 208 al~~~~~~~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 281 (378)
T 3q15_A 208 ALELAMDIQNDRFIAISLLNIANS------YDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF 281 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH
Confidence 9998543222 2346789999999 9999999999999999999 78888999999999999999999999
Q ss_pred HHHHHHHHhCC
Q psy13014 168 ADYQKILELDP 178 (229)
Q Consensus 168 ~~~~~al~~~p 178 (229)
.++++++++.+
T Consensus 282 ~~~~~al~~~~ 292 (378)
T 3q15_A 282 QFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 99999999854
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=121.96 Aligned_cols=164 Identities=18% Similarity=0.143 Sum_probs=140.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCCchhh
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC-----PRSCSVSR 106 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~ 106 (229)
|++++|...|++++....... ....+..+.++..+|.++...|++++|+.+|++++.+. ++. ...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~ 84 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTS--------GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDH--PAV 84 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHH--------CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC--HHH
T ss_pred CCHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcc--hHH
Confidence 788889998888875433111 12347889999999999999999999999999999884 221 223
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--------NPSYLKVYQRRARLYQQSDKLDEALADYQKILEL-- 176 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 176 (229)
..++.++|.+ +...|++++|+.++.+++.+ +|....++.++|.++...|++++|+..+++++.+
T Consensus 85 ~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 85 AATLNNLAVL------YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp HHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 7899999999 99999999999999999998 4677889999999999999999999999999999
Q ss_pred ------CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 177 ------DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 177 ------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
+|....++..++.++ ...+++.+|+..+.+++ +.|
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCY-LKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHH
Confidence 787888999999999 88999999999999988 544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=131.82 Aligned_cols=189 Identities=10% Similarity=0.087 Sum_probs=154.6
Q ss_pred chhhccc------CCchHHHHHHHHHHHHHhhhh-----------------hhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy13014 6 YQQELSK------NPSFLYTIYFSCFILFILFSE-----------------IRTDCHQFERQVFYIQFIFHVLFYLFCSQ 62 (229)
Q Consensus 6 ~~~~l~~------~p~~~~~~~~~~~~~~~~~~~-----------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (229)
|+++++. .|....++..+|.++... |+ +++|..++++++.... ...
T Consensus 149 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~----------~~~ 217 (411)
T 4a1s_A 149 CERHLTLARQLGDRLSEGRALYNLGNVYHAK-GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR----------DLG 217 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH----------HHT
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHHHHc-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH----------HcC
Confidence 4555555 567778899999999999 99 7777777776653322 113
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
..+..+.++..+|.++...|++++|+.++++++.+.+.... .....++.++|.+ +...|++++|+.++++++.
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS------HIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH------HHHCcCHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999998775422 2235589999999 9999999999999999999
Q ss_pred cCCCc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc------HHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 142 LNPSY------LKVYQRRARLYQQSDKLDEALADYQKILELDPNN------RDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 142 ~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+.|.. ..++..+|.++...|++++|+.++++++.+.+.. ..++..++.++ ...++..+|...+.+++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH-SAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHH
Confidence 87644 6789999999999999999999999999986543 45888999998 88899999999988887
Q ss_pred -ccC
Q psy13014 210 -LHP 212 (229)
Q Consensus 210 -~~p 212 (229)
+.+
T Consensus 371 ~~~~ 374 (411)
T 4a1s_A 371 QLAX 374 (411)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-16 Score=126.66 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=157.2
Q ss_pred cchhhcccCCchH----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFL----YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR 80 (229)
Q Consensus 5 ~~~~~l~~~p~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (229)
.|+++++.+|+++ .++..+|.++... |++++|...+++++..... ....+..+.++..+|.++..
T Consensus 27 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 27 FFEAAVQVGTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLART----------IGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhc----------ccccHHHHHHHHHHHHHHHH
Confidence 4778888899884 6788899999999 9999999999888743221 12456778899999999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCC--------------------hHHHHHHHHHH
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEK--------------------PDQSILACSKA 139 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~--------------------~~~A~~~~~~a 139 (229)
.|++++|+..+++++.+.+.... .....++..+|.+ +...|+ +++|+..++++
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH------HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999998765422 2246689999999 999999 99999999999
Q ss_pred Hhc------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH------HHHHhccCchHHHhhhhhccccccc
Q psy13014 140 ITL------NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD------AYVATKVSPDLKLKEKNGATKLSPD 207 (229)
Q Consensus 140 l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~a~~~~~~ 207 (229)
+.+ .|....++..+|.++...|++++|+..+++++++.|.... ++..++.++ ...+++.+|.+.+.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY-IFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 876 3344668999999999999999999999999988665443 888899888 888999999998888
Q ss_pred cc-ccC
Q psy13014 208 VF-LHP 212 (229)
Q Consensus 208 ~~-~~p 212 (229)
++ +.|
T Consensus 249 al~~~~ 254 (338)
T 3ro2_A 249 TLLLAR 254 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 87 554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=129.61 Aligned_cols=188 Identities=12% Similarity=0.131 Sum_probs=153.5
Q ss_pred chhhcccCCch------HHHHHHHHHHHHHhhhh--------------------hhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy13014 6 YQQELSKNPSF------LYTIYFSCFILFILFSE--------------------IRTDCHQFERQVFYIQFIFHVLFYLF 59 (229)
Q Consensus 6 ~~~~l~~~p~~------~~~~~~~~~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~~ 59 (229)
|+++++..|.. ..++..+|.++... |+ +++|...+++++....
T Consensus 110 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~---------- 178 (406)
T 3sf4_A 110 CQRHLDISRELNDKVGEARALYNLGNVYHAK-GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT---------- 178 (406)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHc-CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH----------
Confidence 45555554443 45888899999999 99 7777777776653322
Q ss_pred hhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 60 CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 60 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
.....+..+.++..+|.++...|++++|+.++++++.+.+.... .....++.++|.+ +...|++++|+.++++
T Consensus 179 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~ 252 (406)
T 3sf4_A 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA------YIFLGEFETASEYYKK 252 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH------HHHcCChHHHHHHHHH
Confidence 12345677889999999999999999999999999998765432 2245689999999 9999999999999999
Q ss_pred HHhcCCCc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc------HHHHHHhccCchHHHhhhhhcccccc
Q psy13014 139 AITLNPSY------LKVYQRRARLYQQSDKLDEALADYQKILELDPNN------RDAYVATKVSPDLKLKEKNGATKLSP 206 (229)
Q Consensus 139 al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~ 206 (229)
++.+.|.. ..++..+|.++...|++++|+..+++++++.+.. ..++..++.++ ...+++.+|+..+.
T Consensus 253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY-TALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHH
T ss_pred HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 99887655 7789999999999999999999999999986554 56888999998 88899999999988
Q ss_pred ccc-cc
Q psy13014 207 DVF-LH 211 (229)
Q Consensus 207 ~~~-~~ 211 (229)
+++ +.
T Consensus 332 ~al~~~ 337 (406)
T 3sf4_A 332 KHLEIS 337 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887 53
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=105.54 Aligned_cols=105 Identities=15% Similarity=0.184 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
.++.++..+|.++...|++++|+..|++++..+|.+ ..++..+|.+ +...|++++|+.+++++++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEE-----SKYWLMKGKA------LYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTSCC
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC-----HHHHHHHHHH------HHHccCHHHHHHHHHHHHHhCcc
Confidence 345667889999999999999999999999999998 9999999999 99999999999999999999999
Q ss_pred --cHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHhCCCcH
Q psy13014 146 --YLKVYQRRARLYQQS-DKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 146 --~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~~ 181 (229)
+..+++.+|.++... |++++|++++++++...|.++
T Consensus 73 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 73 EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999999999 999999999999999999764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=123.71 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=134.2
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Q psy13014 23 SCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC 102 (229)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 102 (229)
.|.++... |++++|...|.+++..... .......+.++..+|.++..+|++++|+.+|++++.+.+...
T Consensus 42 a~~~~~~~-g~~~~A~~~~~~al~~~~~----------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g 110 (307)
T 2ifu_A 42 AAVAFKNA-KQLEQAKDAYLQEAEAHAN----------NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG 110 (307)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence 45667777 9999999999888743221 123345677888999999999999999999999998865433
Q ss_pred ch-hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 103 SV-SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY------LKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 103 ~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
.. ....++.++|.+ |.. |++++|+.+|++++.+.|.. ..++.++|.++..+|++++|+..|++++.
T Consensus 111 ~~~~~a~~~~~lg~~------~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 111 TPDTAAMALDRAGKL------MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp CHHHHHHHHHHHHHH------HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH------HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 236788889999 888 99999999999999887643 56788999999999999999999999998
Q ss_pred hCCCcH------HHHHHhccCchHHHhhhhhcccccccccccCCC
Q psy13014 176 LDPNNR------DAYVATKVSPDLKLKEKNGATKLSPDVFLHPGQ 214 (229)
Q Consensus 176 ~~p~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~p~~ 214 (229)
+.|.+. ..+..++.++ ..+++..+|+..+.+++++|..
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~-~~~g~~~~A~~~~~~al~~p~~ 227 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQ-LHRADYVAAQKCVRESYSIPGF 227 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTSTTS
T ss_pred HHHHcCChhHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHhCCCCC
Confidence 866542 3666777776 6778888888888888766643
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-16 Score=123.70 Aligned_cols=158 Identities=13% Similarity=0.077 Sum_probs=146.9
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc-c-
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFS-EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL-N- 82 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~- 82 (229)
+.++|.+||++..++..++.++..+ + .++++...+++.+ ...|++..+|...+.+.... +
T Consensus 77 t~~~L~~nP~~ytaWn~R~~iL~~l-~~~l~eEL~~~~~~L----------------~~nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 77 TEIIVRMNPAHYTVWQYRFSLLTSL-NKSLEDELRLMNEFA----------------VQNLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHH----------------HTTCCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH----------------HhCCCcHHHHHHHHHHHHHhcCC
Confidence 5679999999999999999999998 8 5999999998887 68899999999999999998 7
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChH--------HHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD--------QSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~--------~A~~~~~~al~~~p~~~~~~~~la 154 (229)
++++++.++.+++..+|.+ ..+|.+++.+ ....+.++ +++++++++++.+|.|..+|..++
T Consensus 140 ~~~~EL~~~~k~L~~dpkN-----y~AW~~R~wv------l~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~ 208 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKN-----YHTWAYLHWL------YSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRW 208 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTC-----HHHHHHHHHH------HHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 8999999999999999999 9999999999 66666666 999999999999999999999999
Q ss_pred HHHHhccc-------HHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 155 RLYQQSDK-------LDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 155 ~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.++..+++ ++++++++.+++.++|+|..+|..+..++
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999987 79999999999999999999999888777
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=113.80 Aligned_cols=156 Identities=9% Similarity=0.037 Sum_probs=117.9
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|.......+.....+..+|..++.. |++++|...|.+++...+................-...++..+|.++...|+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 105 (198)
T 2fbn_A 27 YDYTDEEKVQSAFDIKEEGNEFFKK-NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP 105 (198)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhCCHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3334444556677899999999999 999999999998873211000000000000001112478999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
+|+.++++++.++|.+ ..+++.+|.+ +..+|++++|+.+|+++++++|++..++..++.++..+++.++
T Consensus 106 ~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 106 KAIDHASKVLKIDKNN-----VKALYKLGVA------NMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp HHHHHHHHHHHHSTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCccc-----HHHHHHHHHH------HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 9999999999 9999999999999999999999999999999999999999888
Q ss_pred HH-HHHHHH
Q psy13014 166 AL-ADYQKI 173 (229)
Q Consensus 166 A~-~~~~~a 173 (229)
+. ..|.+.
T Consensus 175 ~~~~~~~~~ 183 (198)
T 2fbn_A 175 KDKLTFGGM 183 (198)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 77 444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-15 Score=106.35 Aligned_cols=139 Identities=8% Similarity=0.003 Sum_probs=113.1
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLF--YLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
.....+...|..++.. |++++|+..|.+++.........-. ........|..+.++.++|.++..+|++++|+..++
T Consensus 9 ~~a~~~~~~G~~~~~~-~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~ 87 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQ-KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3466788899999999 9999999999998855432211000 000001267788999999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHhcccHHH
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL-KVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~ 165 (229)
+++.++|.+ +.+++.+|.+ +..+|++++|+.+|++++.++|++. .+...++.+....++..+
T Consensus 88 ~al~~~p~~-----~~a~~~~g~~------~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 88 EVLKREETN-----EKALFRRAKA------RIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHHHHSTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcc-----hHHHHHHHHH------HHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999 9999999999999999999999998 667778877776665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-16 Score=110.50 Aligned_cols=101 Identities=19% Similarity=0.207 Sum_probs=92.6
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH----
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR---- 181 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---- 181 (229)
.+.++.++|.+ ++..|+|++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|++.
T Consensus 7 ~A~a~~~lG~~------~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 7 AAIAEKDLGNA------AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 47789999999 99999999999999999999999999999999999999999999999999999998764
Q ss_pred ---HHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 182 ---DAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 182 ---~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
.++.++|.++ ..++++.+|++.|.+++ ..|+
T Consensus 81 ~~a~~~~~lg~~~-~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 81 LIAKAMSRAGNAF-QKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCcC
Confidence 4677888887 88899999999999998 6653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=123.60 Aligned_cols=178 Identities=11% Similarity=0.123 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHHhhhh--------------------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSE--------------------IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGN 76 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 76 (229)
..++..+|.++... |+ +++|...+++++.... .....+..+.++..+|.
T Consensus 123 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~----------~~~~~~~~~~~~~~l~~ 191 (338)
T 3ro2_A 123 ARALYNLGNVYHAK-GKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVT----------ALGDRAAQGRAFGNLGN 191 (338)
T ss_dssp HHHHHHHHHHHHHH-HHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH----------hcCCHHHHHHHHHHHHH
Confidence 34788899999999 99 7777777766653322 11345677889999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc------HHH
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY------LKV 149 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~ 149 (229)
++...|++++|+..+++++...+.... .....++..+|.+ +...|++++|+..+++++.+.+.. ..+
T Consensus 192 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 192 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA------YIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 999999999999999999998664322 2245689999999 999999999999999999886654 678
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCc------HHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNN------RDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
+..+|.++...|++++|+..+++++++.+.. ..++..++.++ ...+++.+|...+.+++ +.+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999886654 44788899998 88999999999998887 554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=99.41 Aligned_cols=122 Identities=19% Similarity=0.244 Sum_probs=109.0
Q ss_pred cCCch-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 12 KNPSF-LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 12 ~~p~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
.+|.. ..+++.+|.++... |++++|...+++.+ ...|..+.++..+|.++...|++++|+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 65 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQ-GDYDEAIEYYQKAL----------------ELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65 (125)
T ss_dssp ----CHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HHCcCcHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45655 78899999999999 99999999999887 34566678899999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
+++++...|.+ ..++..+|.+ +...|++++|+..+++++..+|+++.++..+|.++...|
T Consensus 66 ~~~~~~~~~~~-----~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 66 YQKALELDPNN-----AEAWYNLGNA------YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCcc-----HHHHHHHHHH------HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999998 9999999999 999999999999999999999999999999999987654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-16 Score=127.25 Aligned_cols=165 Identities=14% Similarity=0.091 Sum_probs=96.2
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHccC
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFC--SQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
+...++..++....++.+|..++.. |++.+|...|++++...+...... .... .....-...+++++|.++..+|+
T Consensus 168 ~~~~~~~~~~~a~~~~~~g~~~~~~-g~~~~A~~~y~~Al~~~p~~~~~~-~~~~~~~~~~~l~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 168 SDMTVEERIGAADRRKMDGNSLFKE-EKLEEAMQQYEMAIAYMGDDFMFQ-LYGKYQDMALAVKNPCHLNIAACLIKLKR 245 (338)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTCSS-SCCHHHHHHHHHHHHHSCHHHHHT-CCHHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhccchhhh-hcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444555677888899999999999 999999999998874322111000 0000 00001112489999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHhccc
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL-YQQSDK 162 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~ 162 (229)
|++|+.+|++++.++|.+ ..+++++|.+ +..+|++++|+.+|+++++++|++..++..++.+ ....+.
T Consensus 246 ~~~A~~~~~~al~~~p~~-----~~a~~~lg~a------~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKN-----PKALFRRGKA------KAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp CHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999 9999999999999999999999999999999998 445677
Q ss_pred HHHHHHHHHHHHHhCCCcHHH
Q psy13014 163 LDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~ 183 (229)
.+++...|.+++...|+++..
T Consensus 315 ~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHhhCCCCCCCCC
Confidence 888999999999999987643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-16 Score=106.47 Aligned_cols=102 Identities=17% Similarity=0.106 Sum_probs=91.7
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
..++.+|.+ +...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..+
T Consensus 18 ~~~~~~g~~------~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 91 (121)
T 1hxi_A 18 ENPMEEGLS------MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91 (121)
T ss_dssp SCHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhHHHHHHH------HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 347889999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 188 KVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 188 ~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+.++ ...+++.+|+..+.+++ ++|++..
T Consensus 92 a~~~-~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 92 AVSH-TNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHC-------
T ss_pred HHHH-HHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999 89999999999999999 8887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.7e-16 Score=111.90 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=99.8
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC-------cHH-----HHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS-------YLK-----VYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
+..+.++|.. ++..|+|++|+..|+++++++|+ +.. +|.++|.++..+|++++|+.+|++++
T Consensus 11 a~~~~~~G~~------l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL 84 (159)
T 2hr2_A 11 AYLALSDAQR------QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6778999999 99999999999999999999999 444 99999999999999999999999999
Q ss_pred Hh-------CCCcHHHH----HHhccCchHHHhhhhhccccccccc-ccCCCcccccC
Q psy13014 175 EL-------DPNNRDAY----VATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQHN 220 (229)
Q Consensus 175 ~~-------~p~~~~~~----~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~~~ 220 (229)
++ +|++..+| +++|.++ ..++++.+|+..|.+++ ++|++..+...
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL-~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALAL-DGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHH-HHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99 99999999 9999999 99999999999999999 99987766543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=103.50 Aligned_cols=125 Identities=13% Similarity=0.039 Sum_probs=110.4
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
..+|.++..++.+|.+++.. |++++|...|++++ ...|.++.++..+|.++...|++++|+..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al----------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 65 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVG-RKYPEAAACYGRAI----------------TRNPLVAVYYTNRALCYLKMQQPEQALAD 65 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHh-CcHHHHHHHHHHHH----------------hhCcCcHHHHHHHHHHHHHhcCHHHHHHH
Confidence 46788999999999999999 99999999999988 56677889999999999999999999999
Q ss_pred HHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHhcccH
Q psy13014 91 YNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS-----YLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 91 ~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~ 163 (229)
+++++.++|.+ +.++..+|.+ +..+|++++|+.+|++++.++|+ +..+...+..+.......
T Consensus 66 ~~~al~~~p~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 66 CRRALELDGQS-----VKAHFFLGQC------QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp HHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchh-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999 99999999999999999999988 666776676666554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-16 Score=107.28 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=86.5
Q ss_pred HccCHHHHHHHHHHHHHh---CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy13014 80 RLNQWSESLAKYNEALRS---CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL 156 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 156 (229)
.+|++++|+.+|++++.+ +|.+ +.++.++|.+ +..+|++++|+.+|+++++++|+++.+++++|.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~-----~~~~~~lg~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 70 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL-----AECYLGLGST------FRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMV 70 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 468999999999999999 4766 8999999999 9999999999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 157 YQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 157 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
+..+|++++|+..+++++..+|+++.....
T Consensus 71 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 71 LYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999999999999887643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-17 Score=138.18 Aligned_cols=146 Identities=10% Similarity=0.110 Sum_probs=126.6
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
+...+++.+|.++... |++++|...|++++ ...|.++.++..+|.++..+|++++|+..|+++
T Consensus 4 ~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al----------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 66 (477)
T 1wao_1 4 KRAEELKTQANDYFKA-KDYENAIKFYSQAI----------------ELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66 (477)
T ss_dssp HHHTTSSSSSSSTTTT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCHHHHHHHHHHHH----------------HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3445566677778888 99999999999988 567788999999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHH--HHhcccHHHHHHHHH-
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARL--YQQSDKLDEALADYQ- 171 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~- 171 (229)
++++|.+ +.++.++|.+ +..+|++++|+..|+++++++|++..++..++.+ +...|++++|++.++
T Consensus 67 l~l~p~~-----~~~~~~lg~~------~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 67 IELDKKY-----IKGYYRRAAS------NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHSCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999 9999999999 9999999999999999999999999999999998 889999999999999
Q ss_pred ----------HHHHhCCCcHHHHHHhc
Q psy13014 172 ----------KILELDPNNRDAYVATK 188 (229)
Q Consensus 172 ----------~al~~~p~~~~~~~~l~ 188 (229)
+++.++|+....+...+
T Consensus 136 ~~~~~~~~~~~al~~~~~~~~~~~~~~ 162 (477)
T 1wao_1 136 KRSVVDSLDIESMTIEDEYSGPKLEDG 162 (477)
T ss_dssp CCSTTTCCTTSSCCCCTTCCSCCCGGG
T ss_pred cchhHhhhhhhhccccccccccccccc
Confidence 88888888766655554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-15 Score=116.21 Aligned_cols=178 Identities=9% Similarity=-0.011 Sum_probs=138.2
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|+....+...+..+... |++++|...+.+.+...+ ...........++.+|..+...|++++|+.++++
T Consensus 72 ~~~~~~l~~~~~~~~~~-~~y~~A~~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 140 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQ-KRYKEIYNKVWNELKKEE----------YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKK 140 (293)
T ss_dssp HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCC----------CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHh-hhHHHHHHHHHHHhcccc----------CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34444555667777777 889988888876652111 0112234455667899999999999999999999
Q ss_pred HHHhCCCCCch-hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH---hcCCCcH----HHHHHHHHHHHhcccHHH
Q psy13014 94 ALRSCPRSCSV-SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI---TLNPSYL----KVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 94 al~~~p~~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~~~ 165 (229)
++...+...+. ....++.++|.+ |...|++++|+.+|++++ +..|++. .+++++|.++..+|++++
T Consensus 141 al~~~~~~~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~ 214 (293)
T 2qfc_A 141 LLNQQLTGIDVYQNLYIENAIANI------YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEE 214 (293)
T ss_dssp HHTTCCCSSCTTHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHH
Confidence 99886654322 246689999999 999999999999999999 4456543 689999999999999999
Q ss_pred HHHHHHHHHHhCCC------cHHHHHHhccCchHHHhhhhhc-cccccccc
Q psy13014 166 ALADYQKILELDPN------NRDAYVATKVSPDLKLKEKNGA-TKLSPDVF 209 (229)
Q Consensus 166 A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~a-~~~~~~~~ 209 (229)
|+.++++++++.+. ...++.++|.++ .++++..+| ...+.+++
T Consensus 215 Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y-~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 215 SLYQVNKAIEISCRINSMALIGQLYYQRGECL-RKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHH
Confidence 99999999988643 267889999998 888888888 56577665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=129.37 Aligned_cols=181 Identities=6% Similarity=-0.020 Sum_probs=150.7
Q ss_pred cchhhcc-cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHcc
Q psy13014 5 PYQQELS-KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQT-AISLKDEGNALFRLN 82 (229)
Q Consensus 5 ~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 82 (229)
.|+++++ .+|++...++.+|.++... |++++|...|++++ ...|.+ ..+|...|..+...|
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~-g~~~~A~~~~~~al----------------~~~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLL----------------AIEDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHh----------------CccccCchHHHHHHHHHHHHhc
Confidence 4778897 8999999999999999999 99999999999988 334443 358999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
++++|...|++++...|.. ...+...+.+. +...|++++|...|+++++..|+++.+|..++.++...|+
T Consensus 371 ~~~~A~~~~~~Al~~~~~~-----~~~~~~~a~~~-----~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDARTR-----HHVYVTAALME-----YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHHHHHHHHHTCTTCC-----THHHHHHHHHH-----HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHhccCCc-----hHHHHHHHHHH-----HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999998876 66666555440 3468999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHH----HHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 163 LDEALADYQKILELDPNNRD----AYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
+++|...|++++...|.++. +|....... ...|+...+.+.+.++. ..|+
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e-~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH-HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999999876654 776666554 55677666666666666 5553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=102.11 Aligned_cols=126 Identities=12% Similarity=0.122 Sum_probs=113.8
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH---HHHHHHHHHHHHHHcc
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQ---TAISLKDEGNALFRLN 82 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~ 82 (229)
-.+....+|++...++.+|..+... |++++|...|++++ ...|. ...++..+|.++...|
T Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~a~----------------~~~~~~~~~~~~~~~~a~~~~~~~ 79 (148)
T 2dba_A 17 EPRPATPGASSVEQLRKEGNELFKC-GDYGGALAAYTQAL----------------GLDATPQDQAVLHRNRAACHLKLE 79 (148)
T ss_dssp CCCCCCTTCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHH----------------TSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCcCCccchHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHH----------------HHcccchHHHHHHHHHHHHHHHHc
Confidence 3456678899999999999999999 99999999999887 33343 3889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 159 (229)
++++|+..+++++..+|.+ +.++..+|.+ +..+|++++|+.++++++.++|++..++..++.+...
T Consensus 80 ~~~~A~~~~~~~~~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 80 DYDKAETEASKAIEKDGGD-----VKALYRRSQA------LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp CHHHHHHHHHHHHHHTSCC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHhhCccC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 9999999999999999998 9999999999 9999999999999999999999999999888877543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-15 Score=117.65 Aligned_cols=179 Identities=15% Similarity=0.101 Sum_probs=147.5
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSE--IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
+..++..+|.+..++..+++++..+ +. ++++...+++.+ ..+|.+..+|...+.+....|.
T Consensus 97 ~~~~L~~~PKny~aW~hR~wlL~~l-~~~~~~~EL~~~~k~l----------------~~dprNy~AW~~R~~vl~~l~~ 159 (331)
T 3dss_A 97 LESCLRVNPKSYGTWHHRCWLLSRL-PEPNWARELELCARFL----------------EADERNFHCWDYRRFVAAQAAV 159 (331)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHhcc-CcccHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHhCc
Confidence 4668889999999999999999988 84 788888888887 6889999999999999999998
Q ss_pred -HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc--------------CChHHHHHHHHHHHhcCCCcHH
Q psy13014 84 -WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL--------------EKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 84 -~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~ 148 (229)
++++++++.+++..+|.+ ..+|.+++.+ +..+ +.++++++++.+++..+|++..
T Consensus 160 ~~~eel~~~~~~I~~~p~N-----~SAW~~R~~l------l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S 228 (331)
T 3dss_A 160 APAEELAFTDSLITRNFSN-----YSSWHYRSCL------LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS 228 (331)
T ss_dssp CHHHHHHHHHHHHHHCSCC-----HHHHHHHHHH------HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred CHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 699999999999999999 9999999999 6655 4589999999999999999999
Q ss_pred HHHHHHHHHHhc-----------ccHHHHHHHHHHHHHhCCCcHHHHHHhccCch--HHHhhhhhccccccccc-ccC
Q psy13014 149 VYQRRARLYQQS-----------DKLDEALADYQKILELDPNNRDAYVATKVSPD--LKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 149 ~~~~la~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~~~~~~a~~~~~~~~-~~p 212 (229)
+|+.+..++... +.++++++.+.++++++|++.-.+..++.+.. ...+...+....+.+.. +||
T Consensus 229 aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 229 AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 998766666555 57999999999999999998655444443321 11122345555666666 777
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=127.72 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=141.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCCch
Q psy13014 35 RTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ----------WSESLAKYNEALRSCPRSCSV 104 (229)
Q Consensus 35 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~ 104 (229)
++|...+++++ ...|+...+|...+.++...++ +++++..+++++..+|.+
T Consensus 46 eeal~~~~~~l----------------~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~--- 106 (567)
T 1dce_A 46 ESVLELTSQIL----------------GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS--- 106 (567)
T ss_dssp HHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHH----------------HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC---
Confidence 35566666666 6789999999999999999998 999999999999999999
Q ss_pred hhHHHHHhHhhhhhhhHHhhccC--ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCcH
Q psy13014 105 SRAVFYANRSAALEKLASYLSLE--KPDQSILACSKAITLNPSYLKVYQRRARLYQQSD-KLDEALADYQKILELDPNNR 181 (229)
Q Consensus 105 ~~~~~~~~lg~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~ 181 (229)
..+|.+++.+ +..++ ++++++++++++++++|.+..+|..++.+....| .++++++++.++++.+|++.
T Consensus 107 --y~aW~hR~w~------l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~ 178 (567)
T 1dce_A 107 --YGTWHHRCWL------LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNY 178 (567)
T ss_dssp --HHHHHHHHHH------HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCH
T ss_pred --HHHHHHHHHH------HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCc
Confidence 9999999999 99999 6699999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHhccCchHHH--------------hhhhhccccccccc-ccCCCcccc
Q psy13014 182 DAYVATKVSPDLKL--------------KEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 182 ~~~~~l~~~~~~~~--------------~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
.+|..++.++ .++ +.+.++++.+.+++ ++|++...+
T Consensus 179 saW~~r~~ll-~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 179 SSWHYRSCLL-PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp HHHHHHHHHH-HHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred cHHHHHHHHH-HhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999987 554 56889999999999 999775543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-14 Score=95.30 Aligned_cols=115 Identities=6% Similarity=0.049 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
.+..++.+|.++... |++++|...+++++ ...|.++.++..+|.++...|++++|+..+++++
T Consensus 3 ~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 3 QVNELKEKGNKALSV-GNIDDALQCYSEAI----------------KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHc-ccHHHHHHHHHHHH----------------HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 467889999999999 99999999999887 4567778899999999999999999999999999
Q ss_pred HhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy13014 96 RSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ 158 (229)
Q Consensus 96 ~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 158 (229)
..+|.+ +.++..+|.+ +...|++++|+..++++++.+|+++.++..++.+..
T Consensus 66 ~~~~~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 66 DLKPDW-----GKGYSRKAAA------LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HhCccc-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999998 9999999999 999999999999999999999999999999887753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=116.12 Aligned_cols=167 Identities=16% Similarity=0.120 Sum_probs=145.2
Q ss_pred HHHhhhhh-hhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCCc
Q psy13014 27 LFILFSEI-RTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN--QWSESLAKYNEALRSCPRSCS 103 (229)
Q Consensus 27 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~ 103 (229)
.... |.+ ++|...+++++ ...|+...+|...|.++...+ .+++++..++.++..+|.+
T Consensus 42 ~~~~-~e~s~~aL~~t~~~L----------------~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~-- 102 (306)
T 3dra_A 42 LMKA-EEYSERALHITELGI----------------NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKN-- 102 (306)
T ss_dssp HHHT-TCCSHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTC--
T ss_pred HHHc-CCCCHHHHHHHHHHH----------------HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCccc--
Confidence 3444 444 56777777776 688999999999999999999 9999999999999999999
Q ss_pred hhhHHHHHhHhhhhhhhHHhhcc---CChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH--HHHHHHHHHHHhCC
Q psy13014 104 VSRAVFYANRSAALEKLASYLSL---EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD--EALADYQKILELDP 178 (229)
Q Consensus 104 ~~~~~~~~~lg~~~~~~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p 178 (229)
..+|..++.++..+. ..+ +++++++.+++++++.+|.+..+|..++.+...+|.++ ++++.+.++++.+|
T Consensus 103 ---y~aW~~R~~iL~~~~--~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 103 ---YQIWNYRQLIIGQIM--ELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp ---CHHHHHHHHHHHHHH--HHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred ---HHHHHHHHHHHHHHH--HhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 999999999921111 555 78999999999999999999999999999999999998 99999999999999
Q ss_pred CcHHHHHHhccCchHHHhh------hhhccccccccc-ccCCCcccc
Q psy13014 179 NNRDAYVATKVSPDLKLKE------KNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~~------~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
.+..+|...+.+. ..++. +.++++.+.+++ .+|+|...+
T Consensus 178 ~N~sAW~~R~~ll-~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 178 KNNSAWSHRFFLL-FSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp TCHHHHHHHHHHH-HSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred CCHHHHHHHHHHH-HhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 9999999999887 55555 888999999999 999776554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=9.8e-15 Score=117.73 Aligned_cols=180 Identities=13% Similarity=0.036 Sum_probs=155.7
Q ss_pred cccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc-CHHHHH
Q psy13014 10 LSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLN-QWSESL 88 (229)
Q Consensus 10 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~ 88 (229)
+...|++..++-....++... +..++|...+++++ ...|++..+|...+.++...+ .+++++
T Consensus 47 i~y~~~y~~~~~~~r~~~~~~-e~se~AL~lt~~~L----------------~~nP~~ytaWn~R~~iL~~l~~~l~eEL 109 (349)
T 3q7a_A 47 IMYSEEYKDAMDYFRAIAAKE-EKSERALELTEIIV----------------RMNPAHYTVWQYRFSLLTSLNKSLEDEL 109 (349)
T ss_dssp BCCCHHHHHHHHHHHHHHHTT-CCSHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred eeeCHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH----------------HhCchhHHHHHHHHHHHHHhhhhHHHHH
Confidence 345566666666655555555 55667888887777 688999999999999999999 599999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc-C-ChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH--
Q psy13014 89 AKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL-E-KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD-- 164 (229)
Q Consensus 89 ~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-- 164 (229)
..+++++..+|.+ ..+|..++.+ +..+ + ++++++++++++++.+|.+..+|..++.+....|.++
T Consensus 110 ~~~~~~L~~nPKn-----y~aW~hR~wl------L~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~ 178 (349)
T 3q7a_A 110 RLMNEFAVQNLKS-----YQVWHHRLLL------LDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI 178 (349)
T ss_dssp HHHHHHHHTTCCC-----HHHHHHHHHH------HHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCc-----HHHHHHHHHH------HHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc
Confidence 9999999999999 9999999999 8877 7 8999999999999999999999999999999999988
Q ss_pred ------HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh-------hhhccccccccc-ccCCCcccc
Q psy13014 165 ------EALADYQKILELDPNNRDAYVATKVSPDLKLKE-------KNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 165 ------~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-------~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
++++.++++++.+|.|..+|..++.+. .+++. +.++++...+++ ++|+|...+
T Consensus 179 ~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL-~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW 245 (349)
T 3q7a_A 179 SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLR-VSRPGAETSSRSLQDELIYILKSIHLIPHNVSAW 245 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-TTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhccccccchHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999999887 55543 678899999998 999776544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-13 Score=113.57 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...+..+|..++.. |++++|...|++++...................+..+.++.++|.++..+|++++|+.++++++.
T Consensus 223 a~~~~~~g~~~~~~-g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 223 SEDLKNIGNTFFKS-QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 45688889999999 99999999999998654432111111112236678899999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 169 (229)
++|.+ +.+++++|.+ +..+|++++|+.+|+++++++|++..++..++.++..+++++++...
T Consensus 302 ~~p~~-----~~a~~~lg~~------~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPSN-----TKALYRRAQG------WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCchh-----HHHHHHHHHH------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999 99999999999999999999999999999999999999999887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-15 Score=117.27 Aligned_cols=169 Identities=9% Similarity=0.020 Sum_probs=131.1
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Q psy13014 23 SCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC 102 (229)
Q Consensus 23 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 102 (229)
.+..+... |++++|...+++.+.... ...........+..+|..+...+++++|+.+|++++...+...
T Consensus 81 ~i~~~~~~-~~y~~a~~~~~~~l~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~ 149 (293)
T 3u3w_A 81 QVIMLCKQ-KRYKEIYNKVWNELKKEE----------YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHTTCC----------CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHH-hhHHHHHHHHHHHhcccc----------CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc
Confidence 35566677 888888888877662100 0001112234555689999999999999999999999765542
Q ss_pred ch-hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 103 SV-SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-------NPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 103 ~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
+. ....++.++|.+ |..+|++++|+.+|+++++. .+....+++++|.++..+|++++|+.++++++
T Consensus 150 ~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 150 DVYQNLYIENAIANI------YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp CTTHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 235579999999 99999999999999999952 23335689999999999999999999999999
Q ss_pred HhCCCc------HHHHHHhccCchHHHhh-hhhccccccccc
Q psy13014 175 ELDPNN------RDAYVATKVSPDLKLKE-KNGATKLSPDVF 209 (229)
Q Consensus 175 ~~~p~~------~~~~~~l~~~~~~~~~~-~~~a~~~~~~~~ 209 (229)
++.+.. ..++.++|.++ .++++ +.+|++.+.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECL-RKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHH
Confidence 886544 78999999999 78884 689999988887
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-16 Score=122.69 Aligned_cols=172 Identities=10% Similarity=-0.063 Sum_probs=97.7
Q ss_pred cchhhcccCCchHHHHHHH-------HHHHHHhhhhhhhhHHHHHHHHHHHH----------------------------
Q psy13014 5 PYQQELSKNPSFLYTIYFS-------CFILFILFSEIRTDCHQFERQVFYIQ---------------------------- 49 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~-------~~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------- 49 (229)
.|.+++..+|+...+|..+ +.++... ++..+++..+.+.+..-+
T Consensus 28 ~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~-~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~L 106 (282)
T 4f3v_A 28 LFTEITNYDESACDAWIGRIRCGDTDRVTLFRA-WYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITM 106 (282)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHH-HHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHH
T ss_pred HHHHHHHhChhhhHHHHhHHHccCCcHHHHHHH-HHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHH
Confidence 4889999999999999999 8899988 888888887766553000
Q ss_pred ----------HHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhh
Q psy13014 50 ----------FIFHVLFYL-FCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALE 118 (229)
Q Consensus 50 ----------~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~ 118 (229)
........+ ......|... ..+.+|.++++.++|++|+..|+.++...+.. ....+++++|.+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~---~~~~a~~~LG~a-- 180 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF---LAGAAGVAHGVA-- 180 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH---HHHHHHHHHHHH--
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc---cHHHHHHHHHHH--
Confidence 000000011 1112234444 55556666666666666666655444331110 012355555666
Q ss_pred hhHHhhccCChHHHHHHHHHHHhcC--CC-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 119 KLASYLSLEKPDQSILACSKAITLN--PS-YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 119 ~~~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
+..+|++++|+.+|++++... |. .+.+++++|.++..+|+.++|...|++++..+|+ ..+...|.
T Consensus 181 ----l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 ----AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp ----HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred ----HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 556666666666666655432 33 3445566666666666666666666666666665 55544443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=113.74 Aligned_cols=158 Identities=13% Similarity=0.080 Sum_probs=127.1
Q ss_pred chhhcccCCc------hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy13014 6 YQQELSKNPS------FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALF 79 (229)
Q Consensus 6 ~~~~l~~~p~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (229)
|.+++++.+. -..++..+|.++... |++++|+.+|++++.... ........+.++..+|.++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~----------~~g~~~~~a~~~~~lg~~~~ 127 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDL-QRMPEAVQYIEKASVMYV----------ENGTPDTAAMALDRAGKLME 127 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCGGGGHHHHHHHHHHHH----------TTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHHHHHHH
Confidence 4555555432 245778889999999 999999999999884322 11123355788999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCCCch-hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc------HHHHHH
Q psy13014 80 RLNQWSESLAKYNEALRSCPRSCSV-SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY------LKVYQR 152 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~ 152 (229)
. |++++|+.+|++++.+.|..... ....++.++|.+ +..+|++++|+.+|++++.+.|.+ ..++..
T Consensus 128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRL------LVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 9 99999999999999998754322 246789999999 999999999999999999986543 347888
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 153 RARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 153 la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
+|.++..+|++++|+..|++++ ++|....
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 9999999999999999999999 9997654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-13 Score=96.11 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
..++..+|.++... |++++|...+++++...+. .........++..+|.++...|++++|+.++++++.
T Consensus 9 ~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 9 GRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKE----------FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH----------hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788899999999 9999999999988754331 123345567899999999999999999999999999
Q ss_pred hCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHhcccHHHHHHH
Q psy13014 97 SCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP------SYLKVYQRRARLYQQSDKLDEALAD 169 (229)
Q Consensus 97 ~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~ 169 (229)
+.+.... .....++.++|.+ +...|++++|+.++++++.+.+ ....++..+|.++...|++++|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 151 (164)
T 3ro3_A 78 LARQLKDRAVEAQSCYSLGNT------YTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 151 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHH
Confidence 8654322 2246789999999 9999999999999999997732 2256789999999999999999999
Q ss_pred HHHHHHhCCC
Q psy13014 170 YQKILELDPN 179 (229)
Q Consensus 170 ~~~al~~~p~ 179 (229)
+++++++...
T Consensus 152 ~~~a~~~~~~ 161 (164)
T 3ro3_A 152 AEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999987654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.7e-14 Score=96.41 Aligned_cols=95 Identities=11% Similarity=0.107 Sum_probs=85.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhh---HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQK---LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAV 108 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 108 (229)
|++++|+..|++++ .. .|..+.+++.+|.++...|++++|+..|+++++.+|++ +.
T Consensus 4 g~~~~A~~~~~~al----------------~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-----~~ 62 (117)
T 3k9i_A 4 GLEAQAVPYYEKAI----------------ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-----QA 62 (117)
T ss_dssp ---CCCHHHHHHHH----------------SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HH
T ss_pred CcHHHHHHHHHHHH----------------HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----hH
Confidence 88999999999988 44 68999999999999999999999999999999999999 99
Q ss_pred HHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHH
Q psy13014 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRR 153 (229)
Q Consensus 109 ~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 153 (229)
++.++|.+ +..+|++++|+..+++++...|+++......
T Consensus 63 ~~~~l~~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 101 (117)
T 3k9i_A 63 LRVFYAMV------LYNLGRYEQGVELLLKIIAETSDDETIQSYK 101 (117)
T ss_dssp HHHHHHHH------HHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred HHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999 9999999999999999999999998765433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=95.12 Aligned_cols=108 Identities=15% Similarity=0.154 Sum_probs=100.3
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHH
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKY 91 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 91 (229)
++|++..+++.+|.++... |++++|...+++++ ...|..+.++..+|.++...|++++|+..+
T Consensus 1 l~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~----------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 63 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDA-GNYTESIDLFEKAI----------------QLDPEESKYWLMKGKALYNLERYEEAVDCY 63 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSS-CCHHHHHHHHHHHH----------------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHh-hhHHHHHHHHHHHH----------------HhCcCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4789999999999999999 99999999999887 455667789999999999999999999999
Q ss_pred HHHHHhCCC--CCchhhHHHHHhHhhhhhhhHHhhcc-CChHHHHHHHHHHHhcCCCcH
Q psy13014 92 NEALRSCPR--SCSVSRAVFYANRSAALEKLASYLSL-EKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 92 ~~al~~~p~--~~~~~~~~~~~~lg~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~ 147 (229)
++++..+|. + ..++..+|.+ +..+ |++++|++++++++...|.++
T Consensus 64 ~~a~~~~~~~~~-----~~~~~~l~~~------~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 64 NYVINVIEDEYN-----KDVWAAKADA------LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTSCCTTC-----HHHHHHHHHH------HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCcccch-----HHHHHHHHHH------HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999999999 8 9999999999 9999 999999999999999998753
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=112.42 Aligned_cols=133 Identities=9% Similarity=-0.047 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY- 146 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~- 146 (229)
..+...++..+...|+|++|.+.|...+...|.+ . ..+.+|.+ +++.+++++|+..+++++...++.
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~-----~-~~~~~a~l------~~~~~r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEH-----L-VAWMKAVV------YGAAERWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH-----H-HHHHHHHH------HHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch-----H-HHHHHHHH------HHHcCCHHHHHHHHHHhhccCCccc
Confidence 3466778999999999999999999999988876 7 99999999 999999999999999988864332
Q ss_pred -HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CC-cHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 147 -LKVYQRRARLYQQSDKLDEALADYQKILELD--PN-NRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 147 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
..+++++|.++..+|++++|+.+|++++.-. |. ..++++.++.++ .++++..+|...|++++ .+|+
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL-~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMAR-RSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCc
Confidence 4589999999999999999999999998654 55 667999999999 89999999999999999 8885
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-14 Score=97.77 Aligned_cols=95 Identities=8% Similarity=0.012 Sum_probs=57.5
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc------
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN------ 180 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------ 180 (229)
+..+..+|.+ ++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++
T Consensus 4 ~~~~~~~g~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNS------LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 4555566666 6666666666666666666666666666666666666666666666666666666665
Q ss_pred HHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 181 RDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
..++..++.++ ..+++...++..+.+.
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQ-GAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHH-HHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHH-HHHHhHhhhHhHHHHh
Confidence 55566666555 5555555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=109.46 Aligned_cols=154 Identities=11% Similarity=0.054 Sum_probs=118.2
Q ss_pred chhhcccCCchH------HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy13014 6 YQQELSKNPSFL------YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALF 79 (229)
Q Consensus 6 ~~~~l~~~p~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (229)
|+++++..|... ..++.+|.++... |++++|...+++++.... ........+.++..+|.++.
T Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~----------~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 2qfc_A 98 VWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQL----------TGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHTTCC----------CSSCTTHHHHHHHHHHHHHH
T ss_pred HHHHhccccCChhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHh----------cCCchHHHHHHHHHHHHHHH
Confidence 344555555432 3456677788777 899999999988872110 00122335678999999999
Q ss_pred HccCHHHHHHHHHHHHH---hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC------cHHHH
Q psy13014 80 RLNQWSESLAKYNEALR---SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS------YLKVY 150 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~ 150 (229)
..|++++|+.+|++++. ..|.+ ......++.++|.+ |..+|++++|+.++++++.+.+. ...++
T Consensus 167 ~~~~~~~A~~~~~kal~~~~~~~~~-~~~~~~~~~nlg~~------y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 167 ENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKA------LYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCcc-ccchHHHHHhHHHH------HHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999999994 45543 11123689999999 99999999999999999987542 27889
Q ss_pred HHHHHHHHhcccHHHH-HHHHHHHHHhC
Q psy13014 151 QRRARLYQQSDKLDEA-LADYQKILELD 177 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A-~~~~~~al~~~ 177 (229)
+++|.++..+|++++| ..++++++.+.
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999 78899998764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-13 Score=100.25 Aligned_cols=150 Identities=11% Similarity=0.064 Sum_probs=122.8
Q ss_pred cCC-chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHH
Q psy13014 12 KNP-SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAK 90 (229)
Q Consensus 12 ~~p-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 90 (229)
.+| ....++..+|.++... |++++|...+++++.... .....+..+.++..+|.++...|++++|+.+
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 20 AHPATASGARFMLGYVYAFM-DRFDEARASFQALQQQAQ----------KSGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp TSTTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH----------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHH----------HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 355 6778999999999999 999999999998874322 1125667888999999999999999999999
Q ss_pred HHHHHHhCCCCC-c-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC--Cc----HHHHHHHHHHHHhccc
Q psy13014 91 YNEALRSCPRSC-S-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--SY----LKVYQRRARLYQQSDK 162 (229)
Q Consensus 91 ~~~al~~~p~~~-~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~~~ 162 (229)
+++++.+..... . .....++.++|.+ +..+|++++|+.++++++.+.+ .+ ..++..+|.++...|+
T Consensus 89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 89 FLEERELLASLPEDPLAASANAYEVATV------ALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999999832211 1 1246789999999 9999999999999999997632 22 3457899999999999
Q ss_pred HHHHHHHHHHHHHhCC
Q psy13014 163 LDEALADYQKILELDP 178 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p 178 (229)
+++|+..+++++++..
T Consensus 163 ~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-14 Score=93.56 Aligned_cols=68 Identities=15% Similarity=0.227 Sum_probs=59.1
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
++.+++.+|.++...|++++|+..|+++++++|+++.++.++|.++ ..++++.+|+..+.+++ ++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMAL-IKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHhCCCc
Confidence 4667888899999999999999999999999999888899999888 78888888988888888 88876
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-14 Score=110.27 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=118.3
Q ss_pred chhhcccCCchHH------HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q psy13014 6 YQQELSKNPSFLY------TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALF 79 (229)
Q Consensus 6 ~~~~l~~~p~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 79 (229)
|+++++..|..+. .+..+|.++... +++++|..++++++... ...........++..+|.++.
T Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~Ai~~~~~al~~~----------~~~~~~~~~~~~~~~lg~~y~ 166 (293)
T 3u3w_A 98 VWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQ----------LTGIDVYQNLYIENAIANIYA 166 (293)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHTC----------CCCSCTTHHHHHHHHHHHHHH
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHHh----------cccccHHHHHHHHHHHHHHHH
Confidence 4455555554443 233467777766 89999999998887310 001122244668999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCC--CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc------HHHHH
Q psy13014 80 RLNQWSESLAKYNEALRSCPRS--CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY------LKVYQ 151 (229)
Q Consensus 80 ~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 151 (229)
..|++++|+.+|++++...... .......++.++|.+ |..+|++++|+.++++++++.+.. +.+++
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~------y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKA------LYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999643211 223346789999999 999999999999999999886433 78999
Q ss_pred HHHHHHHhcc-cHHHHHHHHHHHHHhC
Q psy13014 152 RRARLYQQSD-KLDEALADYQKILELD 177 (229)
Q Consensus 152 ~la~~~~~~~-~~~~A~~~~~~al~~~ 177 (229)
++|.++..+| .+++|+..|++++.+.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 9999999999 5799999999998763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-14 Score=100.30 Aligned_cols=89 Identities=21% Similarity=0.191 Sum_probs=80.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCC
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW----------SESLAKYNEALRSCPRS 101 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~ 101 (229)
+.+++|...+++++ ...|.++.+|+++|.++...+++ ++|+..|+++++++|++
T Consensus 16 ~~feeA~~~~~~Ai----------------~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~ 79 (158)
T 1zu2_A 16 LLFEQIRQDAENTY----------------KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79 (158)
T ss_dssp HHHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHH----------------HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence 67788888888777 68899999999999999999875 59999999999999999
Q ss_pred CchhhHHHHHhHhhhhhhhHHhhcc-----------CChHHHHHHHHHHHhcCCCcH
Q psy13014 102 CSVSRAVFYANRSAALEKLASYLSL-----------EKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 102 ~~~~~~~~~~~lg~~~~~~~~~~~~-----------~~~~~A~~~~~~al~~~p~~~ 147 (229)
..+|+++|.+ |..+ |++++|+.+|++|++++|++.
T Consensus 80 -----~~A~~~LG~a------y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 80 -----DEAVWCIGNA------YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp -----HHHHHHHHHH------HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred -----HHHHHHHHHH------HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 9999999999 7665 489999999999999999974
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-14 Score=105.82 Aligned_cols=155 Identities=11% Similarity=-0.023 Sum_probs=123.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-chhhHHHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC-SVSRAVFY 110 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~ 110 (229)
|++++|...++... ......+.++..+|.++...|++++|+.++++++.+..... ......++
T Consensus 6 g~~~~A~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 69 (203)
T 3gw4_A 6 HDYALAERQAQALL----------------AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRAL 69 (203)
T ss_dssp -CHHHHHHHHHHHH----------------TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ccHHHHHHHHHHhc----------------CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 77777777443332 23336788999999999999999999999999999644322 22347889
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhc---CCC----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC--cH
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITL---NPS----YLKVYQRRARLYQQSDKLDEALADYQKILELDPN--NR 181 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~ 181 (229)
.++|.+ +...|++++|+.++++++.+ .++ ...++.++|.++...|++++|+..+++++.+.+. ++
T Consensus 70 ~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 143 (203)
T 3gw4_A 70 HQVGMV------ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143 (203)
T ss_dssp HHHHHH------HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH------HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccch
Confidence 999999 99999999999999999998 442 3567999999999999999999999999976432 22
Q ss_pred ----HHHHHhccCchHHHhhhhhccccccccc
Q psy13014 182 ----DAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 182 ----~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.++..++.++ ...++..+|...+.+++
T Consensus 144 ~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 144 VAIACAFRGLGDLA-QQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHCcCHHHHHHHHHHHH
Confidence 2457888888 78888999988888776
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=91.82 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
+|+..|++++..+|.+ +.+++.+|.+ +...|++++|+..|++++.++|+++.+++.+|.++...|++++
T Consensus 3 ~a~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDN-----MLLRFTLGKT------YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHH
Confidence 5789999999999999 9999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCc--HHHHHHhccCc
Q psy13014 166 ALADYQKILELDPNN--RDAYVATKVSP 191 (229)
Q Consensus 166 A~~~~~~al~~~p~~--~~~~~~l~~~~ 191 (229)
|+..|+++++++|.. ......+...+
T Consensus 72 A~~~~~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 72 ARQAWESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 999999999998854 34444444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-13 Score=91.58 Aligned_cols=125 Identities=10% Similarity=0.057 Sum_probs=107.6
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|+....++.+|.++... |++++|...|++++ ...|.++.++..+|.++...|++++|+.++++
T Consensus 1 ~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~----------------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 63 (131)
T 1elr_A 1 GKQALKEKELGNDAYKK-KDFDTALKHYDKAK----------------ELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63 (131)
T ss_dssp CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHh-cCHHHHHHHHHHHH----------------hcCCccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45678899999999999 99999999999887 45567788999999999999999999999999
Q ss_pred HHHhCCCCCc--hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 94 ALRSCPRSCS--VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 94 al~~~p~~~~--~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
++...|.+.. .....++..+|.+ +...|++++|+.+++++++..| ++.....++.+...+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 64 AIEVGRENREDYRQIAKAYARIGNS------YFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHhhccccchhHHHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 9999875321 1126789999999 9999999999999999999999 68888888888776554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.2e-14 Score=98.85 Aligned_cols=140 Identities=13% Similarity=0.142 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
.....+.++..+|.++...|++++|+.++++++...+.... .....++..+|.+ +...|++++|+.++++++.
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~ 77 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNA------YIFLGEFETASEYYKKTLL 77 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999998664322 2235689999999 9999999999999999998
Q ss_pred cCCCc------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC------cHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 142 LNPSY------LKVYQRRARLYQQSDKLDEALADYQKILELDPN------NRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 142 ~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
+.+.. ..++..+|.++...|++++|+..+++++++.+. ...++..++.++ ...++..+|.+.+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 78 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY-TALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH-HHccCHHHHHHHHHHHH
Confidence 75432 568999999999999999999999999987432 245778888888 88889999988888776
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=9.7e-13 Score=85.02 Aligned_cols=85 Identities=25% Similarity=0.337 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
..+.+++.+|.++...|++++|+..|++++..+|.+ +.++.++|.+ +...|++++|+.++++++.++|+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-----AEAWYNLGNA------YYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHH------HHHHhhHHHHHHHHHHHHhcCCC
Confidence 455667777777777777777777777777777776 7777777777 77777777777777777777777
Q ss_pred cHHHHHHHHHHHHhcc
Q psy13014 146 YLKVYQRRARLYQQSD 161 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~ 161 (229)
++.++.++|.++...|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 7777777777766543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-13 Score=91.91 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH---HHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTA---ISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
.+++.+|.++... |++++|...|++++ ...|.++ .+++.+|.++...|++++|+..|+++
T Consensus 3 ~~~~~~a~~~~~~-~~~~~A~~~~~~~~----------------~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 65 (129)
T 2xev_A 3 RTAYNVAFDALKN-GKYDDASQLFLSFL----------------ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65 (129)
T ss_dssp CCHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHHHHHH----------------HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3578889999999 99999999998887 3334333 79999999999999999999999999
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
+..+|++.. .+.+++.+|.+ +..+|++++|+..+++++...|+++.+...+..+..-.+
T Consensus 66 ~~~~p~~~~--~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 66 VSRYPTHDK--AAGGLLKLGLS------QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHCTTSTT--HHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHCCCCcc--cHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 999997622 25779999999 999999999999999999999999887666665544433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=103.31 Aligned_cols=127 Identities=9% Similarity=-0.063 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC----ChHHHHHHHHHHHh
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE----KPDQSILACSKAIT 141 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~----~~~~A~~~~~~al~ 141 (229)
.++.+++.+|.++...+++++|+..|++++.. .+ +.+++++|.+ |.. + ++++|+.+|+++++
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~-----~~a~~~lg~~------y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GD-----GDALALLAQL------KIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TC-----HHHHHHHHHH------TTS-STTSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CC-----HHHHHHHHHH------HHc-CCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999999999999999886 45 8999999999 988 7 99999999999965
Q ss_pred cCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCC--CcHHHHHHhccCchHH----Hhhhhhccccccccc
Q psy13014 142 LNPSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDP--NNRDAYVATKVSPDLK----LKEKNGATKLSPDVF 209 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~ 209 (229)
+.++.+++++|.+|.. .+++++|+.+|+++++.+| .++.++.+++.++ .. .++..+|++.|.++.
T Consensus 82 --~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y-~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 82 --AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIY-ASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp --TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHH-HHTSSSSCCHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHH
Confidence 6789999999999998 8999999999999999998 4589999999998 55 567899999999888
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.46 E-value=6e-13 Score=105.46 Aligned_cols=180 Identities=12% Similarity=0.046 Sum_probs=142.6
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHHHHHccC
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLE--QTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~ 83 (229)
|++.++..+....+++.+|.++... |++++|...+.+.+ ...+ ....+....+.++..+|+
T Consensus 89 l~~l~~~~~~~~~~~~~la~i~~~~-g~~eeAL~~l~~~i----------------~~~~~~~~lea~~l~vqi~L~~~r 151 (310)
T 3mv2_B 89 LENLLKDKQNSPYELYLLATAQAIL-GDLDKSLETCVEGI----------------DNDEAEGTTELLLLAIEVALLNNN 151 (310)
T ss_dssp HHHTTTTSCCCHHHHHHHHHHHHHH-TCHHHHHHHHHHHH----------------TSSCSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHc-CCHHHHHHHHHHHh----------------ccCCCcCcHHHHHHHHHHHHHCCC
Confidence 4556666566677788999999999 99999999998876 3333 788899999999999999
Q ss_pred HHHHHHHHHHHHHhCCC-----CCchhhHHHHHhHhhhhhhhHHhhccC--ChHHHHHHHHHHHhcCCC--cHHHHHHHH
Q psy13014 84 WSESLAKYNEALRSCPR-----SCSVSRAVFYANRSAALEKLASYLSLE--KPDQSILACSKAITLNPS--YLKVYQRRA 154 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~lg~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~--~~~~~~~la 154 (229)
.+.|.+.+++..+.+|+ + .......-|.+ .+..| ++.+|...|+++....|+ .+..+++
T Consensus 152 ~d~A~k~l~~~~~~~~d~~~~~d----~~l~~Laea~v------~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-- 219 (310)
T 3mv2_B 152 VSTASTIFDNYTNAIEDTVSGDN----EMILNLAESYI------KFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-- 219 (310)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHH----HHHHHHHHHHH------HHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCccccccch----HHHHHHHHHHH------HHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--
Confidence 99999999999999882 2 13333334555 44445 999999999999988887 3334444
Q ss_pred HHHHhcccHHHHHHHHHHHHHh----------CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 155 RLYQQSDKLDEALADYQKILEL----------DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~al~~----------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
++..+|++++|...++.+++. +|+++.++.++..+. ..+++ ++.+.+.++. .+|+++-+.
T Consensus 220 -~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~-~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 220 -LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLA-LMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp -HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHH-HHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred -HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHH-HHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 899999999999999988877 588999998887776 55565 7788888888 888776543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=110.17 Aligned_cols=129 Identities=12% Similarity=-0.057 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC---ChHHHHHHHH
Q psy13014 66 QTAISLKDEGNALFRL-----NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE---KPDQSILACS 137 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~A~~~~~ 137 (229)
.++.+++.+|.++... +++++|+..|+++++.. + +.+++++|.+ +...| ++++|+.+|+
T Consensus 289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--~-----~~a~~~lg~~------y~~~g~~~~~~~A~~~~~ 355 (490)
T 2xm6_A 289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--D-----ATAQANLGAI------YFRLGSEEEHKKAVEWFR 355 (490)
T ss_dssp TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--C-----HHHHHHHHHH------HHHSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHH------HHhCCCcccHHHHHHHHH
Confidence 3556788899999887 89999999999998863 4 7889999999 87766 8899999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHH----Hhhhhhccccccccc
Q psy13014 138 KAITLNPSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDPNNRDAYVATKVSPDLK----LKEKNGATKLSPDVF 209 (229)
Q Consensus 138 ~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~ 209 (229)
++++. .++.+++++|.++.. .+++++|+.+|+++++.. ++.++.+++.++ .. .++..+|...|.+++
T Consensus 356 ~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y-~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 356 KAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIY-YYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHH-HcCCCCCCCHHHHHHHHHHHH
Confidence 99987 678999999999999 899999999999998864 688999999998 55 678899999999888
Q ss_pred -ccC
Q psy13014 210 -LHP 212 (229)
Q Consensus 210 -~~p 212 (229)
.+|
T Consensus 431 ~~~~ 434 (490)
T 2xm6_A 431 TNDM 434 (490)
T ss_dssp HHHC
T ss_pred HCCC
Confidence 763
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-13 Score=88.30 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=68.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHH-HHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHH
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAV-FYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVY 150 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 150 (229)
+..|..+...|++++|+..|++++..+|.+ +. +++++|.+ +..+|++++|+.+|+++++++|++..++
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~lg~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG-----KDEAYYLMGNA------YRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST-----HHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456777777788888888888888877777 77 77778888 7777888888888888888887777766
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
.+ +.+.+++..|++++..+|+++
T Consensus 73 ~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 73 AR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred HH--------HHHHHHHHHHHHHhccCcccc
Confidence 44 566777777777777766553
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-12 Score=107.18 Aligned_cols=143 Identities=12% Similarity=-0.036 Sum_probs=80.1
Q ss_pred CCchHHHHHHHHHHHHH----hhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH----ccCH
Q psy13014 13 NPSFLYTIYFSCFILFI----LFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR----LNQW 84 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~ 84 (229)
++.++.+++.+|.++.. . +++++|..+|+++... .++.+++.+|..+.. .+++
T Consensus 35 ~~g~~~a~~~lg~~y~~g~~~~-~~~~~A~~~~~~a~~~------------------~~~~a~~~Lg~~y~~g~g~~~~~ 95 (490)
T 2xm6_A 35 ESGEAKAQLELGYRYFQGNETT-KDLTQAMDWFRRAAEQ------------------GYTPAEYVLGLRYMNGEGVPQDY 95 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred HCCCHHHHHHHHHHHHcCCCCC-cCHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHcCCCCCCCH
Confidence 56789999999999988 7 8999999999887621 233445555555555 5555
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh-
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS----LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ- 159 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~- 159 (229)
++|+..|+++... .+ +.+++.+|.+ |.. .+++++|+.+|+++.+. +++.+++.+|.+|..
T Consensus 96 ~~A~~~~~~a~~~--~~-----~~a~~~Lg~~------y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 96 AQAVIWYKKAALK--GL-----PQAQQNLGVM------YHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEG 160 (490)
T ss_dssp HHHHHHHHHHHHT--TC-----HHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC--CC-----HHHHHHHHHH------HHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Confidence 5555555555443 22 4444555555 444 44555555555554442 344444555555444
Q ss_pred ---cccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 160 ---SDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 160 ---~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+++++|+.+|+++++. .++.++..++.++
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y 193 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMY 193 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 44455555555544443 2344444444444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-12 Score=103.22 Aligned_cols=174 Identities=12% Similarity=-0.033 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
..++...|.++... |+++++...+++++...+ .........++..+|.++...|++++|+..+++++.
T Consensus 14 ~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 81 (373)
T 1hz4_A 14 AEFNALRAQVAIND-GNPDEAERLAKLALEELP-----------PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ 81 (373)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCC-----------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCC-----------CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 35677888888888 999999999988763211 011223556788999999999999999999999999
Q ss_pred hCCCCCch-hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHhcccHHHHH
Q psy13014 97 SCPRSCSV-SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--------PSYLKVYQRRARLYQQSDKLDEAL 167 (229)
Q Consensus 97 ~~p~~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~ 167 (229)
+.|..... ....++.++|.+ +...|++++|+..+++++.+. |....++.++|.++...|++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 82 MARQHDVWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 87654322 234567889999 999999999999999999874 334667888999999999999999
Q ss_pred HHHHHHHHhCCCc-----HHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 168 ADYQKILELDPNN-----RDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 168 ~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..+++++.+.|.. ..++..++.++ ...++..+|...+.++.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCS-LARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHH-HHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 9999999998753 35677888888 78888999988888876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=110.39 Aligned_cols=172 Identities=9% Similarity=-0.132 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHhhh---hhhhhHHHHHHHHHHHH---------------------HHHHHHHhhhhhhhHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFS---EIRTDCHQFERQVFYIQ---------------------FIFHVLFYLFCSQKLEQTAISL 71 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 71 (229)
++.+++.+|.++... | ++++|..+|+++...-+ .....+.++.... +.++.++
T Consensus 175 ~~~a~~~Lg~~~~~~-g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~ 251 (452)
T 3e4b_A 175 TDICYVELATVYQKK-QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASW 251 (452)
T ss_dssp CTTHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHH
T ss_pred CHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHH
Confidence 334888999998887 8 89999998887763210 0001111222111 5556666
Q ss_pred HHHHHH-H--HHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC-----ChHHHHHHHHHHHhcC
Q psy13014 72 KDEGNA-L--FRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE-----KPDQSILACSKAITLN 143 (229)
Q Consensus 72 ~~~g~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~ 143 (229)
+.+|.+ + ...+++++|+..|+++.... + +.+++++|.+ |. .| ++++|+.+|+++.
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~-----~~A~~~Lg~~------y~-~G~g~~~d~~~A~~~~~~Aa--- 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD--Q-----PRAELLLGKL------YY-EGKWVPADAKAAEAHFEKAV--- 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--C-----HHHHHHHHHH------HH-HCSSSCCCHHHHHHHHHTTT---
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--C-----HHHHHHHHHH------HH-cCCCCCCCHHHHHHHHHHHh---
Confidence 677766 3 35667777777777766543 4 6667777766 65 34 6777777777766
Q ss_pred CCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHH---Hhhhhhccccccccc
Q psy13014 144 PSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDPNNRDAYVATKVSPDLK---LKEKNGATKLSPDVF 209 (229)
Q Consensus 144 p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~~~ 209 (229)
|.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.++++.++..- .++..+|...|.++.
T Consensus 315 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 315 GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 6677777777766665 3367777777777665 34566666777666211 224555555555554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.8e-12 Score=101.40 Aligned_cols=189 Identities=11% Similarity=0.042 Sum_probs=141.2
Q ss_pred chhhcccCCchH-----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Q psy13014 6 YQQELSKNPSFL-----YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR 80 (229)
Q Consensus 6 ~~~~l~~~p~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 80 (229)
+++++...|... .++..+|.++... |++++|...+++++...+. .........++..+|.++..
T Consensus 37 ~~~al~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~----------~~~~~~~~~~~~~la~~~~~ 105 (373)
T 1hz4_A 37 AKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQ----------HDVWHYALWSLIQQSEILFA 105 (373)
T ss_dssp HHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCchhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHH
Confidence 455666666543 2577888899888 9999999999888743321 01223445678899999999
Q ss_pred ccCHHHHHHHHHHHHHhCCCCCc---hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC-----cHHHHHH
Q psy13014 81 LNQWSESLAKYNEALRSCPRSCS---VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS-----YLKVYQR 152 (229)
Q Consensus 81 ~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~ 152 (229)
.|++++|+..+++++...+.... .....++.++|.+ +...|++++|+.++++++.+.+. ...++..
T Consensus 106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 99999999999999998632111 1236778899999 99999999999999999998765 3567889
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCC--cHHHHH-----HhccCchHHHhhhhhccccccccc-ccC
Q psy13014 153 RARLYQQSDKLDEALADYQKILELDPN--NRDAYV-----ATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 153 la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~-----~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
+|.++...|++++|...+++++.+.+. .+..+. .++.++ ...++..+|...+.+++ ..|
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW-QMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH-HHCCCHHHHHHHHHhCCCCCC
Confidence 999999999999999999999987432 221221 222334 56677888888777776 544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=84.17 Aligned_cols=79 Identities=32% Similarity=0.402 Sum_probs=76.7
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
+.++..+|.+ +...|++++|+.++++++..+|+++.+++.+|.++...|++++|+..|+++++++|+++.++.+
T Consensus 9 ~~~~~~la~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 9 AEAWYNLGNA------YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHH------HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 7889999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCc
Q psy13014 187 TKVSP 191 (229)
Q Consensus 187 l~~~~ 191 (229)
++.++
T Consensus 83 l~~~~ 87 (91)
T 1na3_A 83 LGNAK 87 (91)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-12 Score=106.24 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc----CChHHHHHHHHHH
Q psy13014 67 TAISLKDEGNALFRLN---QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL----EKPDQSILACSKA 139 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~----~~~~~A~~~~~~a 139 (229)
++.+++.+|.++...| ++++|+..|+++....|.. +..++++|.+ |... +++++|+.+|+++
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-----a~~~~~Lg~~------y~~g~~~~~d~~~A~~~~~~a 243 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-----AQRVDSVARV------LGDATLGTPDEKTAQALLEKI 243 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-----HHHHHHHHHH------HTCGGGSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-----HHHHHHHHHH------HhCCCCCCCCHHHHHHHHHHH
Confidence 4458899999999999 9999999999999999988 8888999999 8665 7999999999998
Q ss_pred HhcCCCcHHHHHHHHHH-H--HhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHh-----hhhhccccccccccc
Q psy13014 140 ITLNPSYLKVYQRRARL-Y--QQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLK-----EKNGATKLSPDVFLH 211 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-----~~~~a~~~~~~~~~~ 211 (229)
. |.++.+++++|.+ + ...+++++|+.+|+++.+.+ ++.+++++|.++ . .+ +..+|++.|.++.
T Consensus 244 a---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y-~-~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 244 A---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLY-Y-EGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp G---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH-H-HCSSSCCCHHHHHHHHHTTT--
T ss_pred c---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH-H-cCCCCCCCHHHHHHHHHHHh--
Confidence 8 8899999999998 4 56889999999999988654 888999999888 4 33 7888888888877
Q ss_pred CCCc
Q psy13014 212 PGQP 215 (229)
Q Consensus 212 p~~~ 215 (229)
|++.
T Consensus 315 ~g~~ 318 (452)
T 3e4b_A 315 GREV 318 (452)
T ss_dssp TTCH
T ss_pred CCCH
Confidence 5443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=86.04 Aligned_cols=74 Identities=16% Similarity=0.347 Sum_probs=67.8
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
.+|++ +.+++.+|.+ ++..|++++|+.+|+++++++|+++.+|+.+|.++..+|++++|+..|++++++
T Consensus 2 ~~p~~-----~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPED-----PFTRYALAQE------HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36777 9999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcH
Q psy13014 177 DPNNR 181 (229)
Q Consensus 177 ~p~~~ 181 (229)
.|...
T Consensus 71 ~~~~~ 75 (100)
T 3ma5_A 71 AREEG 75 (100)
T ss_dssp HHHHS
T ss_pred hhcCC
Confidence 77543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.6e-12 Score=83.44 Aligned_cols=91 Identities=13% Similarity=0.170 Sum_probs=79.4
Q ss_pred HhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhcc
Q psy13014 111 ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK-VYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKV 189 (229)
Q Consensus 111 ~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 189 (229)
+.+|.+ +...|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+..|+++++++|++..++..
T Consensus 4 ~~~a~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--- 74 (99)
T 2kc7_A 4 LKTIKE------LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--- 74 (99)
T ss_dssp HHHHHH------HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH---
T ss_pred HHHHHH------HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH---
Confidence 457788 99999999999999999999999999 99999999999999999999999999999999988744
Q ss_pred CchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 190 SPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 190 ~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
+.+.+++..|.++. .+|++..
T Consensus 75 ------~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 ------KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp ------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred ------HHHHHHHHHHHHHhccCccccc
Confidence 45566677777777 7775543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=83.41 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...|.++.+++.+|.++...|++++|+..|++++.++|.+ ..++.++|.+ +..+|++++|+..|++++.
T Consensus 13 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~------~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-----SVAWKWLGKT------LQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHH
Confidence 5667888999999999999999999999999999999999 9999999999 9999999999999999999
Q ss_pred cCCC--cHHHHHHHHHHHHhccc
Q psy13014 142 LNPS--YLKVYQRRARLYQQSDK 162 (229)
Q Consensus 142 ~~p~--~~~~~~~la~~~~~~~~ 162 (229)
+.|. +......+...+..+++
T Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 82 AAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHhcc
Confidence 9874 34455555555544443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=80.47 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.|.++.+++.+|.++...|++++|+..|+++++++|++ +.+|.++|.+ +..+|++++|+..|++++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDY-----VGTYYHLGKL------YERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----THHHHHHHHH------HHHTTCHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhh
Confidence 47788899999999999999999999999999999999 9999999999 999999999999999999987
Q ss_pred CCc--HHHHHHHHHHHHhc
Q psy13014 144 PSY--LKVYQRRARLYQQS 160 (229)
Q Consensus 144 p~~--~~~~~~la~~~~~~ 160 (229)
|.+ ......+...+...
T Consensus 72 ~~~~~~~~~~~l~~~l~~~ 90 (100)
T 3ma5_A 72 REEGTQKDLSELQDAKLKA 90 (100)
T ss_dssp HHHSCHHHHHHHHHHHHHH
T ss_pred hcCCchhHHHHHHHHHHHc
Confidence 643 34444444444433
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-10 Score=79.91 Aligned_cols=121 Identities=10% Similarity=-0.056 Sum_probs=101.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 111 (229)
+++++|..+|+++.. .. ++.+. +|.++...+..++|+..|+++.+. .+ +.+++
T Consensus 9 ~d~~~A~~~~~~aa~----------------~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~-----~~a~~ 61 (138)
T 1klx_A 9 KDLKKAIQYYVKACE----------------LN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NS-----GNGCR 61 (138)
T ss_dssp HHHHHHHHHHHHHHH----------------TT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TC-----HHHHH
T ss_pred cCHHHHHHHHHHHHc----------------CC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CC-----HHHHH
Confidence 577888888877761 22 23333 999999999999999999999997 45 89999
Q ss_pred hHhhhhhhhHHhhc----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCcHHH
Q psy13014 112 NRSAALEKLASYLS----LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDPNNRDA 183 (229)
Q Consensus 112 ~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~ 183 (229)
++|.+ |.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|+.+|+++.+.. ++.+
T Consensus 62 ~Lg~~------y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A 131 (138)
T 1klx_A 62 FLGDF------YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDA 131 (138)
T ss_dssp HHHHH------HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred HHHHH------HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHH
Confidence 99999 988 89999999999999987 689999999999999 899999999999999884 5666
Q ss_pred HHHhcc
Q psy13014 184 YVATKV 189 (229)
Q Consensus 184 ~~~l~~ 189 (229)
..+++.
T Consensus 132 ~~~l~~ 137 (138)
T 1klx_A 132 CGILNN 137 (138)
T ss_dssp HHHC--
T ss_pred HHHHhh
Confidence 666654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-11 Score=110.17 Aligned_cols=132 Identities=9% Similarity=0.009 Sum_probs=94.3
Q ss_pred chhhccc--CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 6 YQQELSK--NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 6 ~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
|++|++. ..+.+.+|+.+|.++... |++++|+..|.++ +++..+...|.++.+.|+
T Consensus 1092 ldrAiE~Aervn~p~vWsqLAKAql~~-G~~kEAIdsYiKA---------------------dD~say~eVa~~~~~lGk 1149 (1630)
T 1xi4_A 1092 LDRAYEFAERCNEPAVWSQLAKAQLQK-GMVKEAIDSYIKA---------------------DDPSSYMEVVQAANTSGN 1149 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCHHHHHHHHHhc---------------------CChHHHHHHHHHHHHcCC
Confidence 4444442 467789999999999999 9999999988543 456678889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCC-c---------------------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 84 WSESLAKYNEALRSCPRSC-S---------------------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~-~---------------------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
|++|+++|..+.+..+... + ......+..+|.+ ++..|+|++|+.+|.++
T Consensus 1150 yEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~------le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1150 WEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDR------CYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred HHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHH------HHhcCCHHHHHHHHHhh--
Confidence 9999999988887764420 0 0012234456666 67777777777777764
Q ss_pred cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 142 LNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
..|..+|.++.++|++++|++.++++
T Consensus 1222 ------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1222 ------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred ------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 35666777777777777777777766
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-10 Score=88.60 Aligned_cols=165 Identities=9% Similarity=0.004 Sum_probs=127.1
Q ss_pred chhhcccCC--chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHH------HHHHHHHHHHHH
Q psy13014 6 YQQELSKNP--SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLE------QTAISLKDEGNA 77 (229)
Q Consensus 6 ~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~ 77 (229)
+.+.+..+| ++..++...+.++... |+.+.|...+++.. ...+ +........|.+
T Consensus 123 l~~~i~~~~~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~----------------~~~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 123 CVEGIDNDEAEGTTELLLLAIEVALLN-NNVSTASTIFDNYT----------------NAIEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HHHHHTSSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------hcCccccccchHHHHHHHHHHH
Confidence 345566676 8999999999999999 99999999998765 2333 333344444555
Q ss_pred HHHcc--CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc----------CCC
Q psy13014 78 LFRLN--QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL----------NPS 145 (229)
Q Consensus 78 ~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~----------~p~ 145 (229)
.+..| ++.+|...|+++....|+.. ....+.+ + +..+|++++|...++.+++. +|+
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~p~~~---~~~lLln---~------~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTFPTWK---TQLGLLN---L------HLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTSCSHH---HHHHHHH---H------HHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHhCCccHHHHHHHHHHHHHhCCCcc---cHHHHHH---H------HHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 66666 99999999999998888620 0334444 8 99999999999999988876 589
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccc
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSP 206 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 206 (229)
++.++.++..+...+|+ +|.+++.++.+.+|+++.+.... ++...+.++...|.
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~-----~k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ-----EIDAKFDELVRKYD 307 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH-----HHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH-----HHHHHHHHHHHHhc
Confidence 99999999999999998 89999999999999999776421 44445666665554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.6e-11 Score=97.56 Aligned_cols=174 Identities=8% Similarity=0.002 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.++..+|.++... |+++++...+.+.+...+ ..........+...+|.++...|++++|+.++++++..
T Consensus 56 ~al~~l~~~y~~~-~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 124 (434)
T 4b4t_Q 56 TSILELGQLYVTM-GAKDKLREFIPHSTEYMM----------QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEF 124 (434)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHTHHHHH----------TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH----------HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4678899999999 999999999987764322 11122334456777888999999999999999999987
Q ss_pred CCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 98 CPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL------NPSYLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 98 ~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
.+.... ..+..++.++|.+ +...|+|++|+..+.+++.. .+....++..+|.++..+|++++|...+
T Consensus 125 ~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 125 AKREKRVFLKHSLSIKLATL------HYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp HHHSSCCSSHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHH------HHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 543222 2257889999999 99999999999999998875 3444678999999999999999999999
Q ss_pred HHHHHhCCCcH-------HHHHHhccCchHHHhhhhhccccccccc
Q psy13014 171 QKILELDPNNR-------DAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 171 ~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
++++.+.+... ..+..++.++ ...+++.+|...+..++
T Consensus 199 ~~al~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 199 TAARTAANSIYCPTQTVAELDLMSGILH-CEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 99998754322 2334444444 44456666666665554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-10 Score=79.36 Aligned_cols=98 Identities=10% Similarity=0.015 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC---ChHHHHHHHHHHHhcC-C-CcHHHHHHHHHHH
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE---KPDQSILACSKAITLN-P-SYLKVYQRRARLY 157 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~ 157 (229)
....+.+.|.+.+..++.+ ..+.+++|.+ +.+.+ +.++++..++.+++.+ | ++.+++|++|..+
T Consensus 13 ~l~~~~~~y~~e~~~~~~~-----~~~~F~ya~~------Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~ 81 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVS-----KSTQFEYAWC------LVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 81 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCC-----HHHHHHHHHH------HHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCc-----HHHHHHHHHH------HHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 3467778888888888877 9999999999 99988 6679999999999998 7 5789999999999
Q ss_pred HhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 158 QQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.++|+|++|..+++++++++|++..+......+.
T Consensus 82 ~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999998777776
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-09 Score=98.31 Aligned_cols=160 Identities=10% Similarity=-0.025 Sum_probs=123.8
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH----hhhhhh--hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLF----YLFCSQ--KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
|.++... |.+++|...|+++..........+. +....+ ...+.+.+|+.+|.++...|++++|+..|.++
T Consensus 1056 A~Iai~l-glyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1056 ANIAISN-ELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHhC-CCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 8888888 9999999999887543332222221 111111 23467889999999999999999999999886
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC---------------------------cHHHH
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS---------------------------YLKVY 150 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---------------------------~~~~~ 150 (229)
++ +..|..+|.+ +.++|++++|++++..+++..++ +...+
T Consensus 1132 --dD-----~say~eVa~~------~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~ 1198 (1630)
T 1xi4_A 1132 --DD-----PSSYMEVVQA------ANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHI 1198 (1630)
T ss_pred --CC-----hHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHH
Confidence 55 8899999999 99999999999999887765533 23356
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 151 QRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 151 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..+|..+...|+|++|+..|.++ ..|..++.++ .+++++.+|++.++++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tL-vkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTL-VHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHH-HHhCCHHHHHHHHHHhC
Confidence 67888899999999999999886 4777778777 77888888888887764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=92.05 Aligned_cols=141 Identities=10% Similarity=-0.054 Sum_probs=111.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC
Q psy13014 27 LFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC-----PRS 101 (229)
Q Consensus 27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~ 101 (229)
+... |++++|...+++++.... .......|..+..+.++|.+|..+|+|++|+.++++++.+. |++
T Consensus 319 ~~~q-g~~~eA~~l~~~aL~~~~--------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 319 ARSE-GLYHEVVKLCRECLEKQE--------PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHT--------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHhC-CCHHHHHHHHHHHHHHHH--------HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4455 889999998888773221 11224678899999999999999999999999999999873 333
Q ss_pred CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-----CCCcHH---HHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 102 CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-----NPSYLK---VYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 102 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
...+..+.++|.+ |..+|++++|+..+++|+.+ .|+++. ...+++.++..++.+++|...|.++
T Consensus 390 --p~~a~~l~nLa~~------~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 390 --AQLGMAVMRAGLT------NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp --HHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3357789999999 99999999999999999975 577754 5678899999999999999999998
Q ss_pred HHhCCCcHHHH
Q psy13014 174 LELDPNNRDAY 184 (229)
Q Consensus 174 l~~~p~~~~~~ 184 (229)
.+..-++...+
T Consensus 462 ~~~~~~~~~~~ 472 (490)
T 3n71_A 462 REAALNNQPMQ 472 (490)
T ss_dssp HHHHHTC----
T ss_pred HHHHhcCCCCc
Confidence 76544444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.1e-10 Score=95.98 Aligned_cols=134 Identities=7% Similarity=-0.022 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc---
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRS---CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL--- 142 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~--- 142 (229)
......+..+..+|+|++|+..+++++.+...- .......++.++|.+ |..+|+|++|+.++++++.+
T Consensus 310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~------y~~~g~~~eA~~~~~~aL~i~~~ 383 (490)
T 3n71_A 310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEV------LSYLQAYEEASHYARRMVDGYMK 383 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHH
Confidence 344456667788999999999999999974321 123357789999999 99999999999999999976
Q ss_pred --CCCcH---HHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCcHHHH---HHhccCchHHHhhhhhccccccccc
Q psy13014 143 --NPSYL---KVYQRRARLYQQSDKLDEALADYQKILEL-----DPNNRDAY---VATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 143 --~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~---~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.|+++ ..+.++|.+|..+|++++|+..|++|+.+ .|+++... .+++.+. ..++.+.+|...|.++.
T Consensus 384 ~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~-~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 384 LYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTE-MELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45554 57899999999999999999999999965 67776544 4555555 56666777776666654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-09 Score=87.84 Aligned_cols=154 Identities=15% Similarity=0.126 Sum_probs=113.8
Q ss_pred cccCCchHH--HHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH-
Q psy13014 10 LSKNPSFLY--TIYFSCFILFIL--FSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW- 84 (229)
Q Consensus 10 l~~~p~~~~--~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~- 84 (229)
...-|+++. -++..|..+... .....+|...|++++ ..+|+.+.++..++.++.....+
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al----------------~lDP~~a~A~A~la~a~~~~~~~~ 250 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV----------------QSSPEFTYARAEKALVDIVRHSQH 250 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHHHHS
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHHhccC
Confidence 344566654 466667666554 145678888888888 67888888888888777532111
Q ss_pred ------HHHHH-HHHH--HHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHH
Q psy13014 85 ------SESLA-KYNE--ALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRAR 155 (229)
Q Consensus 85 ------~~A~~-~~~~--al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 155 (229)
..++. .+.. ++..+|.. +.++..+|.. +...|++++|+..+++++.++|+ ..+|..+|.
T Consensus 251 ~~~~~~~~~l~~a~~a~~a~~~~~~~-----a~~~~alal~------~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~ 318 (372)
T 3ly7_A 251 PLDEKQLAALNTEIDNIVTLPELNNL-----SIIYQIKAVS------ALVKGKTDESYQAINTGIDLEMS-WLNYVLLGK 318 (372)
T ss_dssp CCCHHHHHHHHHHHHHHHTCGGGTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHH
T ss_pred CCchhhHHHHHHHHHHHHhcccCCcC-----HHHHHHHHHH------HHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHH
Confidence 11111 1222 23456777 9999999999 88889999999999999999974 778899999
Q ss_pred HHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 156 LYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 156 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
++...|++++|++.|.+|+.++|..+..+..-..++
T Consensus 319 ~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~~~~l~F 354 (372)
T 3ly7_A 319 VYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354 (372)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCSHHHHHHHHHSSS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCcChHHHHhCcee
Confidence 999999999999999999999999876554444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.1e-10 Score=93.14 Aligned_cols=150 Identities=9% Similarity=0.051 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.++..+|..++.. |.+++|..+|.+. ..+..+|.++.++|+|++|++.|.++
T Consensus 123 ~a~~~IGd~~~~~-g~yeeA~~~Y~~a------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA--- 174 (449)
T 1b89_A 123 AHIQQVGDRCYDE-KMYDAAKLLYNNV------------------------SNFGRLASTLVHLGEYQAAVDGARKA--- 174 (449)
T ss_dssp ---------------CTTTHHHHHHHT------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHh------------------------hhHHHHHHHHHHhccHHHHHHHHHHc---
Confidence 3667777777777 7777777766533 36778888888888888888888888
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 177 (229)
.+ +..|...+.+ +...|+++.|..+... +..+|++ ...+..+|.+.|++++|+..+++++.++
T Consensus 175 --~~-----~~~Wk~v~~a------Cv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 175 --NS-----TRTWKEVCFA------CVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp --TC-----HHHHHHHHHH------HHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred --CC-----chhHHHHHHH------HHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 34 7788888888 8888888888776665 3355544 4467889999999999999999999999
Q ss_pred CCcHHHHHHhccCch-HHHhhhhhccccccccc-ccC
Q psy13014 178 PNNRDAYVATKVSPD-LKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 178 p~~~~~~~~l~~~~~-~~~~~~~~a~~~~~~~~-~~p 212 (229)
+.+..++..++.++. .+.+++.+.++.|...+ +.|
T Consensus 238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 238 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 999999999998875 45566777777777776 655
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.06 E-value=7.1e-10 Score=97.23 Aligned_cols=181 Identities=10% Similarity=-0.072 Sum_probs=126.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDC-HQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
.|+++|...|.++..|+..+..+... |+..+|. ..|++++ ...|.....+...+......|+
T Consensus 331 ~Ye~aL~~~p~~~~lW~~ya~~~~~~-~~~~~a~r~il~rAi----------------~~~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 331 VYMQAAQHVCFAPEIWFNMANYQGEK-NTDSTVITKYLKLGQ----------------QCIPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH-SCCTTHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHhCC
Confidence 48899999999999999999998888 9988886 8888887 4556677788999999999999
Q ss_pred HHHHHHHHHHHHHhC-----------CCCC------chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-CCC
Q psy13014 84 WSESLAKYNEALRSC-----------PRSC------SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-NPS 145 (229)
Q Consensus 84 ~~~A~~~~~~al~~~-----------p~~~------~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-~p~ 145 (229)
+++|...|++++... |.+. ......+|...+.. ..+.|..+.|...|.+|++. .+.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~------erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT------MKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH------HHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999752 4210 00013456666666 55556666667777776665 333
Q ss_pred cHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 146 YLKVYQRRARLYQQSDK-LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
....|...|.+....++ ++.|...|+.+++..|+++..+...+... ...++...|...|++++
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe-~~~~~~~~AR~lferal 531 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFL-IYVNEESQVKSLFESSI 531 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHHTCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHH-HhCCCHHHHHHHHHHHH
Confidence 44555555555555443 66666777777766666666665555544 44555556666666555
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-09 Score=70.63 Aligned_cols=74 Identities=22% Similarity=0.195 Sum_probs=67.6
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCC---hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEK---PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
+|++ +.++..+|.+ ++..++ .++|...+++++.++|+++.+++.+|..++..|+|++|+..|++++
T Consensus 2 ~p~~-----~~~~~~~a~a------l~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 2 NAVT-----ATQLAAKATT------LYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCCC-----HHHHHHHHHH------HHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCC-----HHHHHHHHHH------HHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677 9999999999 865555 7999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHH
Q psy13014 175 ELDPNNRD 182 (229)
Q Consensus 175 ~~~p~~~~ 182 (229)
+.+|.++.
T Consensus 71 ~~~p~~~~ 78 (93)
T 3bee_A 71 DSNDPNLD 78 (93)
T ss_dssp TCCCTTCC
T ss_pred hhCCCCcc
Confidence 99998443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-09 Score=87.74 Aligned_cols=188 Identities=10% Similarity=-0.037 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFY-LFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEAL 95 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 95 (229)
|.+.+-.|..+... |++++|...|.+.+...+........ ............++..+|.+|...|++++|++++.+++
T Consensus 4 p~~~l~~a~~l~~~-~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 4 PGSKLEEARRLVNE-KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp TTHHHHHHHHHHHH-TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44566677778888 99999999988776211100000000 00011234555678999999999999999999999999
Q ss_pred HhCCCCCch-hhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHhcccHHHHHH
Q psy13014 96 RSCPRSCSV-SRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN------PSYLKVYQRRARLYQQSDKLDEALA 168 (229)
Q Consensus 96 ~~~p~~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~ 168 (229)
...+..... ....+...+|.+ +...|++++|+..+.+++... +....++.++|.++...|+|++|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 83 EYMMQFAKSKTVKVLKTLIEKF------EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHH------CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 987654322 134567778999 999999999999999998753 3447789999999999999999999
Q ss_pred HHHHHHHh------CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 169 DYQKILEL------DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 169 ~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
.+++++.. .|....++..++.++ ...+++.+|...+.+++ ..+
T Consensus 157 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 157 LINDLLREFKKLDDKPSLVDVHLLESKVY-HKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHHHHHHHHTTSSCSTHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHhh
Confidence 99999876 344557888999998 88899999888888776 443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-09 Score=93.91 Aligned_cols=200 Identities=8% Similarity=-0.031 Sum_probs=151.0
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhh-h-----hhhhHHHHHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYL-F-----CSQKLEQTAISLKDEGNAL 78 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~g~~~ 78 (229)
.|++++...|.+...++..+.+.... |+++.|...|++++..+......+... . ..........+|...+...
T Consensus 366 il~rAi~~~P~s~~Lwl~~a~~ee~~-~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQCIPNSAVLAFSLSEQYELN-TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 46788999999998888888888888 999999999999886542111100000 0 0001123556888888888
Q ss_pred HHccCHHHHHHHHHHHHHh-CCCCCchhhHHHHHhHhhhhhhhHHhhccC-ChHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q psy13014 79 FRLNQWSESLAKYNEALRS-CPRSCSVSRAVFYANRSAALEKLASYLSLE-KPDQSILACSKAITLNPSYLKVYQRRARL 156 (229)
Q Consensus 79 ~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~ 156 (229)
...|..+.|...|.+|+.. .+.. ..+|...|.+ ....+ +++.|...|+++++..|+++..|...+..
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~-----~~lyi~~A~l------E~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVT-----PDIYLENAYI------EYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSC-----THHHHHHHHH------HHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCC-----hHHHHHHHHH------HHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 8999999999999999987 3344 5667777777 66654 59999999999999999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhCCC---cHHHHHHhccCchHHHhhhhhccccccccc-ccCCCccc
Q psy13014 157 YQQSDKLDEALADYQKILELDPN---NRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQI 217 (229)
Q Consensus 157 ~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~ 217 (229)
....|+.+.|...|++++...|+ ...+|....... .+.|+...+.+...++. ..|++..+
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE-~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE-SKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH-HHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 99999999999999999999884 455666665554 66677777777777776 66755443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-11 Score=97.33 Aligned_cols=155 Identities=12% Similarity=0.018 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH------------HHHHHhhhhhhhHHHHHHHHHHHHHHHHHcc
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFI------------FHVLFYLFCSQKLEQTAISLKDEGNALFRLN 82 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (229)
+++.+|..+|.++... |++++|++.|.+......+. .....++........++.+...++.++.+.|
T Consensus 30 ~~~~vWs~La~A~l~~-g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg 108 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQK-GMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTN 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHc-CCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhC
Confidence 4456999999999999 99999999886542111000 0001111111111222334444444555555
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK 162 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 162 (229)
++.++..+++ .|+ ...|..+|.+ ++..|.|++|+.+|.++ ..|..+|.++..+|+
T Consensus 109 ~l~e~e~f~~-----~pn------~~a~~~IGd~------~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 109 RLAELEEFIN-----GPN------NAHIQQVGDR------CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE 163 (449)
T ss_dssp CHHHHTTTTT-----CC----------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC
T ss_pred CHHHHHHHHc-----CCc------HHHHHHHHHH------HHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc
Confidence 5555444442 122 3478888888 99999999999999976 368889999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhc
Q psy13014 163 LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGA 201 (229)
Q Consensus 163 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a 201 (229)
|++|++.++++ .++..|.....+| -..+++..|
T Consensus 164 yq~AVea~~KA-----~~~~~Wk~v~~aC-v~~~ef~lA 196 (449)
T 1b89_A 164 YQAAVDGARKA-----NSTRTWKEVCFAC-VDGKEFRLA 196 (449)
T ss_dssp HHHHHHHHHHH-----TCHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHc-----CCchhHHHHHHHH-HHcCcHHHH
Confidence 99999999999 3566666655555 444444444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-08 Score=78.93 Aligned_cols=108 Identities=10% Similarity=0.002 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHHH---c--c------CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhcc-----C
Q psy13014 64 LEQTAISLKDEGNALFR---L--N------QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL-----E 127 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~---~--~------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~-----~ 127 (229)
.+.++..++..|..... . + ...+|...++++++++|+... ..+|..+|.. |... |
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~---GsA~~~LG~l------Y~~vPp~~gG 218 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE---GAVWNVLTKF------YAAAPESFGG 218 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH---HHHHHHHHHH------HHHSCTTTTC
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc---CHHHHHHHHH------HHhCCCccCC
Confidence 35566666666665543 1 2 368899999999999999411 7799999999 9886 9
Q ss_pred ChHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCc
Q psy13014 128 KPDQSILACSKAITLNPSY-LKVYQRRARLYQQ-SDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 128 ~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~ 180 (229)
+.++|.++|++|++++|+. ..+++.+|..+.. .|++++|...++++++.+|..
T Consensus 219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999975 9999999999988 599999999999999998874
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=76.23 Aligned_cols=108 Identities=18% Similarity=0.112 Sum_probs=95.6
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh--
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ-- 159 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 159 (229)
+++++|+..|+++.+..... +. +|.+ |...+..++|+.+|+++.+. .++.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~-----a~----lg~~------y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF-----GC----LSLV------SNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-----HH----HHHH------TCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHcCCCHh-----hh----HHHH------HHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 57899999999999987543 33 9999 99999999999999999987 789999999999999
Q ss_pred --cccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHH----Hhhhhhccccccccc
Q psy13014 160 --SDKLDEALADYQKILELDPNNRDAYVATKVSPDLK----LKEKNGATKLSPDVF 209 (229)
Q Consensus 160 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~ 209 (229)
.+++++|+.+|+++.+. .++.+..+++.++ .. .++..+|++.|.++.
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y-~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQ-YAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHH-HCCCCCCcCHHHHHHHHHHHH
Confidence 89999999999999987 6799999999998 55 677888888888776
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-09 Score=70.28 Aligned_cols=78 Identities=22% Similarity=0.091 Sum_probs=71.1
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-------PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
+.-++.+|.. ++..++|..|+.+|++|++.. +..+.++..+|.++..+|++++|+..++++++++|+
T Consensus 5 a~dc~~lG~~------~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKV------AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH------HHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 6678899999 999999999999999999863 456789999999999999999999999999999999
Q ss_pred cHHHHHHhccC
Q psy13014 180 NRDAYVATKVS 190 (229)
Q Consensus 180 ~~~~~~~l~~~ 190 (229)
++.+..+++.+
T Consensus 79 ~~~~~~n~~~~ 89 (104)
T 2v5f_A 79 HQRANGNLKYF 89 (104)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHhhHHHH
Confidence 99999988843
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.4e-08 Score=67.67 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRS--CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+.-++.+|..++..++|..|+..|++|+...+.. .....+.++..+|.+ ++++|+++.|+.+++++++++|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~------~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYA------VYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHH------HHHccCHHHHHHHHHHHHhcCCC
Confidence 3457899999999999999999999999974221 112348899999999 99999999999999999999999
Q ss_pred cHHHHHHHH
Q psy13014 146 YLKVYQRRA 154 (229)
Q Consensus 146 ~~~~~~~la 154 (229)
+..+..+++
T Consensus 79 ~~~~~~n~~ 87 (104)
T 2v5f_A 79 HQRANGNLK 87 (104)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHhhHH
Confidence 999988887
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-08 Score=80.61 Aligned_cols=124 Identities=13% Similarity=0.068 Sum_probs=94.1
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIR-TDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
.|+++++++|++..++..+++++... .... ......... . ............+..+.++..++..+...|+
T Consensus 221 l~e~Al~lDP~~a~A~A~la~a~~~~-~~~~~~~~~~~~~l----~---~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 221 LLGEIVQSSPEFTYARAEKALVDIVR-HSQHPLDEKQLAAL----N---TEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCCCHHHHHHH----H---HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHH-hccCCCchhhHHHH----H---HHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 57899999999999999988888644 2221 000111100 0 0000011224567888899999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
+++|+..+++++.++|+ ...|..+|.+ +...|++++|++.|++|+.++|....
T Consensus 293 ~d~A~~~l~rAl~Ln~s------~~a~~llG~~------~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 293 TDESYQAINTGIDLEMS------WLNYVLLGKV------YEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHHCCC------HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHHhcCCC------HHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999964 7788999999 99999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.8e-08 Score=83.88 Aligned_cols=103 Identities=12% Similarity=0.047 Sum_probs=83.8
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC---CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-----CCCcH
Q psy13014 76 NALFRLNQWSESLAKYNEALRSCPRS---CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-----NPSYL 147 (229)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 147 (229)
......|+|++|+..+++++.+.... ........+.++|.+ |..+|+|++|+.++++++.+ .|+++
T Consensus 306 ~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~------y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 379 (433)
T 3qww_A 306 RRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGV------CLYMQDWEGALKYGQKIIKPYSKHYPVYSL 379 (433)
T ss_dssp HHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHH------HHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 33345789999999999999973221 113357789999999 99999999999999999976 45554
Q ss_pred ---HHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCcHHHH
Q psy13014 148 ---KVYQRRARLYQQSDKLDEALADYQKILEL-----DPNNRDAY 184 (229)
Q Consensus 148 ---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 184 (229)
..+.++|.+|..+|++++|+..|++|+++ .|+++...
T Consensus 380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 56999999999999999999999999976 67777554
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.7e-08 Score=71.32 Aligned_cols=84 Identities=7% Similarity=0.011 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLN---QWSESLAKYNEALRSC-P-RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACS 137 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~ 137 (229)
..+.+..+.+.+|.++.+.+ +.++++..++..++.+ | .. .++++++|.. ++++++|++|..+++
T Consensus 27 ~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~-----rd~lY~LAv~------~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 27 AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ-----RDYVFYLAVG------NYRLKEYEKALKYVR 95 (152)
T ss_dssp TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-----HHHHHHHHHH------HHHTSCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch-----HHHHHHHHHH------HHHccCHHHHHHHHH
Confidence 34567889999999999988 7779999999999998 6 34 8999999999 999999999999999
Q ss_pred HHHhcCCCcHHHHHHHHHHH
Q psy13014 138 KAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 138 ~al~~~p~~~~~~~~la~~~ 157 (229)
++++++|++..+...+..+-
T Consensus 96 ~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 96 GLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHH
Confidence 99999999988766655443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=66.34 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 65 EQTAISLKDEGNALFRLNQ---WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
|.++..+..+|.+++..++ .++|...+++++.++|++ +.++..+|.. ++..|+|++|+.+++++++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-----~rA~~~lg~~------~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-----EAALSLIAND------HFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHh
Confidence 5667889999999986666 799999999999999999 9999999999 9999999999999999999
Q ss_pred cCCCcH
Q psy13014 142 LNPSYL 147 (229)
Q Consensus 142 ~~p~~~ 147 (229)
.+|.++
T Consensus 72 ~~p~~~ 77 (93)
T 3bee_A 72 SNDPNL 77 (93)
T ss_dssp CCCTTC
T ss_pred hCCCCc
Confidence 999843
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.4e-08 Score=81.05 Aligned_cols=110 Identities=9% Similarity=0.079 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc----
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRS---CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL---- 142 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 142 (229)
........+..+|+|++|+..+++++.+.... .......++.++|.+ |..+|+|++|+.++++++.+
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~------y~~~g~~~eA~~~~~~~L~i~~~~ 362 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDA------CINLGLLEEALFYGTRTMEPYRIF 362 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHH------HHhhccHHHHHHHHHHHHHhHHHH
Confidence 34444556778899999999999999874321 123457789999999 99999999999999999976
Q ss_pred -CCCcH---HHHHHHHHHHHhcccHHHHHHHHHHHHHh-----CCCcHHHHH
Q psy13014 143 -NPSYL---KVYQRRARLYQQSDKLDEALADYQKILEL-----DPNNRDAYV 185 (229)
Q Consensus 143 -~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~ 185 (229)
.|+++ ..++++|.+|..+|++++|+..+++|+++ .|+++....
T Consensus 363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 35554 56999999999999999999999999966 677776554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.7e-07 Score=62.85 Aligned_cols=98 Identities=11% Similarity=0.027 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHH---HHHHHHHHHhcC-C-CcHHHHHHHHHHH
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQ---SILACSKAITLN-P-SYLKVYQRRARLY 157 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~ 157 (229)
....+...|.+....++.+ ..+.+++|.+ +.+.++... +|..++..+..+ | ..-+.+|.+|..+
T Consensus 16 ~l~~~~~~y~~e~~~~~~s-----~~~~F~yAw~------Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVS-----KSTQFEYAWC------LVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCC-----HHHHHHHHHH------HTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCc-----HHHHHHHHHH------HHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 3456677788888877777 9999999999 988887766 999999998887 5 4677999999999
Q ss_pred HhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 158 QQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 158 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+++|+|++|..+++.+++++|++..+......+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999987666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6e-07 Score=74.74 Aligned_cols=103 Identities=12% Similarity=0.062 Sum_probs=81.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCCchhh
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC-----PRSCSVSR 106 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~ 106 (229)
|++++|...+++++.... .......|..+..+.++|.+|..+|+|++|+.++++++.+. |++ .+.
T Consensus 312 g~~~eA~~~~~~~L~i~~--------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H--p~~ 381 (433)
T 3qww_A 312 KSPSELLEICELSQEKMS--------SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS--LNV 381 (433)
T ss_dssp SCHHHHHHHHHHHHHHHT--------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC--HHH
T ss_pred cCHHHHHHHHHHHHHHhh--------CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC--hHH
Confidence 556777777777663211 11224678899999999999999999999999999999873 333 345
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-----CCCcHHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-----NPSYLKVY 150 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~ 150 (229)
+..++++|.+ |..+|++++|+..|++|+++ .|+++.+-
T Consensus 382 a~~l~nLa~~------~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 382 ASMWLKLGRL------YMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHH------HHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 7789999999 99999999999999999986 58877653
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=3.4e-06 Score=65.72 Aligned_cols=109 Identities=11% Similarity=0.074 Sum_probs=87.7
Q ss_pred ccCCchHHHHHHHHHHHHHhhh----------hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHHH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFS----------EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQ--TAISLKDEGNAL 78 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~ 78 (229)
..+|+++..++..|.+.....+ ....+...+++++ ..+|. +..++..+|..|
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAl----------------eLDP~~~~GsA~~~LG~lY 209 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERAC----------------DLWPSYQEGAVWNVLTKFY 209 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH----------------HHCTTHHHHHHHHHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHH----------------HhCCCcccCHHHHHHHHHH
Confidence 4789999999999988765322 2234444444444 45565 777999999999
Q ss_pred HHc-----cCHHHHHHHHHHHHHhCCC-CCchhhHHHHHhHhhhhhhhHHhhc-cCChHHHHHHHHHHHhcCCCc
Q psy13014 79 FRL-----NQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYLS-LEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 79 ~~~-----~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~lg~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~ 146 (229)
... |+.++|..+|+++++++|+ + ...++..|.. +.. .|+++.|...+++++..+|..
T Consensus 210 ~~vPp~~gGd~ekA~~~ferAL~LnP~~~-----id~~v~YA~~------l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 210 AAAPESFGGGMEKAHTAFEHLTRYCSAHD-----PDHHITYADA------LCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHSCTTTTCCHHHHHHHHHHHHHHCCTTC-----SHHHHHHHHH------TTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HhCCCccCCCHHHHHHHHHHHHHhCCCCC-----chHHHHHHHH------HHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 995 9999999999999999996 5 7888889988 877 599999999999999998763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=72.24 Aligned_cols=116 Identities=9% Similarity=-0.126 Sum_probs=86.8
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCC
Q psy13014 27 LFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC-----PRS 101 (229)
Q Consensus 27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~ 101 (229)
+... |++++|...+++++.... .......+.....+.++|.+|..+|+|++|+.++++++.+. |++
T Consensus 297 ~~~~-g~~~~a~~~~~~~L~~~~--------~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 297 LKAH-WKWEQVLAMCQAIISSNS--------ERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHT-TCHHHHHHHHHHHHTCSS--------CCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHhh-ccHHHHHHHHHHHHHhcc--------CcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 3344 777777777776652100 01124678889999999999999999999999999999873 333
Q ss_pred CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc-----CCCcHHH---HHHHHHHHHh
Q psy13014 102 CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL-----NPSYLKV---YQRRARLYQQ 159 (229)
Q Consensus 102 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~---~~~la~~~~~ 159 (229)
...+..++++|.+ |..+|++++|+..+++|+++ .|+++.+ +.+++.+...
T Consensus 368 --p~~a~~l~nLa~~------~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 368 --PVRGVQVMKVGKL------QLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp --HHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 3457789999999 99999999999999999976 5777654 4455555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.35 E-value=7.7e-06 Score=69.31 Aligned_cols=168 Identities=8% Similarity=-0.043 Sum_probs=123.5
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhhh----------------h------
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHV-LFYLFC----------------S------ 61 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~----------------~------ 61 (229)
.|++++...|..+..++..+..+... |+.+.|...+++++.. +..... +.+... .
T Consensus 201 ~ye~al~~~p~~~~lW~~ya~~~~~~-~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 201 IHNYILDSFYYAEEVYFFYSEYLIGI-GQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 58889999999999999999888887 9999999999988755 311000 000000 0
Q ss_pred -hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC-ChHHHHHHHHHH
Q psy13014 62 -QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE-KPDQSILACSKA 139 (229)
Q Consensus 62 -~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~-~~~~A~~~~~~a 139 (229)
........+|...+......+..+.|...|.++ . .|.. . ..+|...|.. .+..+ +.+.|...|+.+
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~-~---~~v~i~~A~l------E~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV-G---PHVFIYCAFI------EYYATGSRATPYNIFSSG 346 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC-C---HHHHHHHHHH------HHHHHCCSHHHHHHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC-C---hHHHHHHHHH------HHHHCCChHHHHHHHHHH
Confidence 012233466778888887889999999999999 4 4432 1 6677766766 55555 699999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccC
Q psy13014 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVS 190 (229)
Q Consensus 140 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 190 (229)
++..|+++..+...+......|+.+.|...|+++ +.....|......
T Consensus 347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~f 393 (493)
T 2uy1_A 347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEY 393 (493)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 9999999988888888888999999999999887 3345555554444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-06 Score=56.25 Aligned_cols=83 Identities=7% Similarity=0.029 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHH
Q psy13014 65 EQTAISLKDEGNALFRLNQWSE---SLAKYNEALRSC-PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAI 140 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~---A~~~~~~al~~~-p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al 140 (229)
+....+.+.+|.++...++..+ ++..++..++.. |. .+-++.+.+|.. ++++|+|++|..+++.++
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~----~~Rd~lY~LAvg------~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE----EQRDYVFYLAVG------NYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH----HHHHHHHHHHHH------HHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHH------HHHhhhHHHHHHHHHHHH
Confidence 4567889999999999888777 999999988875 41 238899999999 999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHH
Q psy13014 141 TLNPSYLKVYQRRARLY 157 (229)
Q Consensus 141 ~~~p~~~~~~~~la~~~ 157 (229)
++.|+|..+......+-
T Consensus 102 ~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 102 QTEPQNNQAKELERLID 118 (126)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHH
Confidence 99999988776665443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00017 Score=49.87 Aligned_cols=79 Identities=8% Similarity=-0.079 Sum_probs=70.0
Q ss_pred HHHHHhHhhhhhhhHHhhccCCh---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKP---DQSILACSKAITLNPS-YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
..+.++.|.+ +.+..+. .++|..++..+...|. .-+.+|.+|..++++|+|++|..+.+.+++.+|++..
T Consensus 39 ~~t~F~YAw~------Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 39 IQSRFNYAWG------LIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHH------HHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHH------HHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 8899999999 8877754 4789999999998884 5678999999999999999999999999999999999
Q ss_pred HHHHhccCc
Q psy13014 183 AYVATKVSP 191 (229)
Q Consensus 183 ~~~~l~~~~ 191 (229)
+......+.
T Consensus 113 A~~Lk~~Ie 121 (144)
T 1y8m_A 113 VGALKSMVE 121 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 987766665
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=3e-05 Score=55.12 Aligned_cols=119 Identities=9% Similarity=0.001 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC----chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC----SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
..-++++.....++..+.|+.|+.....++.+..++. ......+...+|.+ ++..++|.+|...|++++.
T Consensus 18 ~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~lada------lf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 18 GSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADS------LFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHH------HHcccHHHHHHHHHHHHHH
Confidence 3456788888999999999999999999877743321 23456789999999 9999999999999999875
Q ss_pred cC------C-------------------CcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 142 LN------P-------------------SYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 142 ~~------p-------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.. + .+.+.-+.+|.|+.+++++++|+..++..-.. -..+.....||.++
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY 165 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence 42 1 11367889999999999999999998754222 23455555555554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.97 E-value=6.9e-05 Score=51.21 Aligned_cols=79 Identities=8% Similarity=-0.079 Sum_probs=69.8
Q ss_pred HHHHHhHhhhhhhhHHhhccCCh---HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKP---DQSILACSKAITLNPS-YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
+.+.++.|.+ +.+..+. .++|..++..++.+|. .-+.++.+|..+.++|+|++|..+.+.+++++|++..
T Consensus 40 ~qt~F~yAw~------Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 40 IQSRFNYAWG------LIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHH------HHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred hhhHHHHHHH------HHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 8889999999 8777654 5789999999998884 4779999999999999999999999999999999999
Q ss_pred HHHHhccCc
Q psy13014 183 AYVATKVSP 191 (229)
Q Consensus 183 ~~~~l~~~~ 191 (229)
+......+.
T Consensus 114 A~~Lk~~Ie 122 (134)
T 3o48_A 114 VGALKSMVE 122 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 987776665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00034 Score=48.43 Aligned_cols=83 Identities=7% Similarity=-0.052 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 65 EQTAISLKDEGNALFRLNQW---SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
...+.+.+++|.++....+. .+++..++..++..|.. +-++.+.+|.. ++++|+|++|..+++.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~----~RdcLYyLAvg------~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIG------CYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST----HHHHHHHHHHH------HHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc----hhHHHHHHHHH------HHHhhhHHHHHHHHHHHHh
Confidence 34567788899999887764 57999999999988864 48899999999 9999999999999999999
Q ss_pred cCCCcHHHHHHHHHHH
Q psy13014 142 LNPSYLKVYQRRARLY 157 (229)
Q Consensus 142 ~~p~~~~~~~~la~~~ 157 (229)
+.|+|..+......+-
T Consensus 106 ~eP~n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 106 HERNNKQVGALKSMVE 121 (144)
T ss_dssp TCCCCHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHH
Confidence 9999988766555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00018 Score=49.11 Aligned_cols=84 Identities=7% Similarity=-0.041 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 66 QTAISLKDEGNALFRLNQW---SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~---~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
-.+.+.+++|.++....+. .+++..++..++..|.. +-+.++.+|.. ++++|+|++|..+++.++++
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~----~Rd~LYyLAvg------~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIG------CYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHH------HHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHH------HHHhhhHHHHHHHHHHHHhh
Confidence 3456788888888887654 57999999999988743 48899999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHh
Q psy13014 143 NPSYLKVYQRRARLYQQ 159 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~ 159 (229)
.|+|..+......+-.+
T Consensus 108 eP~N~QA~~Lk~~Ie~k 124 (134)
T 3o48_A 108 ERNNKQVGALKSMVEDK 124 (134)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99998877666555443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00015 Score=61.43 Aligned_cols=138 Identities=7% Similarity=-0.074 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhh------h----------------
Q psy13014 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALE------K---------------- 119 (229)
Q Consensus 62 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~------~---------------- 119 (229)
...|..+..|...+..+...|+.++|...|++++.. |.+ ..+|...+...+ +
T Consensus 207 ~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~-----~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 207 DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDG-----MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCS-----SHHHHHHHHHTTCTHHHHHHHHHTC----------
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCc-----HHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhh
Confidence 445667889999999999999999999999999999 987 333332222100 0
Q ss_pred -----------hHH-hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 120 -----------LAS-YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD-KLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 120 -----------~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
-.. ..+.+..+.|...|.+| ...+.....|...|.+....+ +.+.|...|+.+++..|+++..+..
T Consensus 281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~ 359 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE 359 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 000 23456788999999999 433335667777777777667 5999999999999999998887666
Q ss_pred hccCchHHHhhhhhccccccc
Q psy13014 187 TKVSPDLKLKEKNGATKLSPD 207 (229)
Q Consensus 187 l~~~~~~~~~~~~~a~~~~~~ 207 (229)
.+... ...++...+...|.+
T Consensus 360 yid~e-~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 360 FFLFL-LRIGDEENARALFKR 379 (493)
T ss_dssp HHHHH-HHHTCHHHHHHHHHH
T ss_pred HHHHH-HHcCCHHHHHHHHHH
Confidence 55543 444544444443333
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00065 Score=47.44 Aligned_cols=117 Identities=11% Similarity=-0.097 Sum_probs=81.3
Q ss_pred ccCCchHHHHHHHHHHHHHhhhhh------hhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 11 SKNPSFLYTIYFSCFILFILFSEI------RTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 11 ~~~p~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
-+.|+++..++.....+-.. |+. +.-.+.|++++..++.- ........+..|...+.. ...++.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~-g~p~~d~~l~rlrd~YerAia~~Pp~--------k~~~wrrYI~LWIrYA~~-~ei~D~ 76 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKN-SVPLSDALLNKLIGRYSQAIEALPPD--------KYGQNESFARIQVRFAEL-KAIQEP 76 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHH-TCSCCHHHHHHHHHHHHHHHHHSCGG--------GGTTCHHHHHHHHHHHHH-HHHHCG
T ss_pred eeCCCCHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHHHHHHcCCcc--------ccccHHHHHHHHHHHHHH-HHhcCH
Confidence 36799999999988877777 777 55556666665433311 123445666777777755 456888
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
++|...|+.++.+.... +.+|...|.. -.++|+..+|...+.+++.+.|....
T Consensus 77 d~aR~vy~~a~~~hKkF-----AKiwi~~AqF------EiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 77 DDARDYFQMARANCKKF-----AFVHISFAQF------ELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp GGCHHHHHHHHHHCTTB-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHHHhHHH-----HHHHHHHHHH------HHHcccHHHHHHHHHHHhccCCCcHH
Confidence 88888888888875554 7777777777 77888888888888888888776544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00048 Score=48.11 Aligned_cols=115 Identities=11% Similarity=0.026 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCCCCchh-h--HHHHHhHhhhhhhhHHhhccCChHHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQW------SESLAKYNEALRSCPRSCSVS-R--AVFYANRSAALEKLASYLSLEKPDQSI 133 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~------~~A~~~~~~al~~~p~~~~~~-~--~~~~~~lg~~~~~~~~~~~~~~~~~A~ 133 (229)
..|++++.|.......-..|+. ++-++.|++|+..-|...... + ..+|...| . +...++.++|.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~------~~ei~D~d~aR 80 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-E------LKAIQEPDDAR 80 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-H------HHHHHCGGGCH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-H------HHHhcCHHHHH
Confidence 4467777888888888777888 888999999999887642111 2 23344444 2 55669999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
+.|+.++.+...-+..|...|.--...|+...|.+.+.+++.+.|...+..
T Consensus 81 ~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 81 DYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 999999998888899999999999999999999999999999999876654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00068 Score=48.20 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCC-----------------chhhHHHHHhHhhhhhhhHHh
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP---RSC-----------------SVSRAVFYANRSAALEKLASY 123 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~-----------------~~~~~~~~~~lg~~~~~~~~~ 123 (229)
......++..+|..++..++|.+|...|++++.... ... .....++.+.++.| +
T Consensus 59 p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C------~ 132 (167)
T 3ffl_A 59 PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAEC------Y 132 (167)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHH------H
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHH------H
Confidence 345677999999999999999999999999977621 110 00123788999999 9
Q ss_pred hccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q psy13014 124 LSLEKPDQSILACSKAITLNPSYLKVYQRRARLY 157 (229)
Q Consensus 124 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 157 (229)
..++++++|+..++. |-.....++....+|..|
T Consensus 133 ~~l~~~~~Ai~~Le~-Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 133 TVLKQDKDAIAILDG-IPSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHTTCHHHHHHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred HHHCCHHHHHHHHhc-CCchhcCHHHHHHHHHHh
Confidence 999999999999874 333445677777777665
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0036 Score=53.02 Aligned_cols=157 Identities=7% Similarity=0.013 Sum_probs=109.6
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH---------ccCHHHHHHHHHHHH
Q psy13014 25 FILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFR---------LNQWSESLAKYNEAL 95 (229)
Q Consensus 25 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---------~~~~~~A~~~~~~al 95 (229)
..+... |+.++|...|++.... ...-+...+..+-.++.. .+..++|.+.|++..
T Consensus 34 d~c~k~-G~~~~A~~lf~~M~~~---------------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~ 97 (501)
T 4g26_A 34 DMCSKK-GDVLEALRLYDEARRN---------------GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI 97 (501)
T ss_dssp HHTTTS-CCHHHHHHHHHHHHHH---------------TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCHHHHHHHHHHHHHc---------------CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence 345566 9999999999776521 111122333333334433 234788999998877
Q ss_pred HhCC-CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 96 RSCP-RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN-PSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 96 ~~~p-~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
...- .+ ...|..+-.. +.+.|+.++|...+++..+.. ..+..+|..+-..+...|+.++|.+.|+..
T Consensus 98 ~~G~~Pd-----~~tyn~lI~~------~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 98 VDKVVPN-----EATFTNGARL------AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HTTCCCC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCCCC-----HHHHHHHHHH------HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 6532 23 7788888888 999999999999999887753 336778888889999999999999999998
Q ss_pred HHhCCC-cHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 174 LELDPN-NRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 174 l~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.+..-. +...+..+-..+ -+.++..+|.+.+.++-
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~-~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVS-MDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHH-hhCCCHHHHHHHHHHHH
Confidence 765322 344555665566 66777777777666653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.03 Score=45.69 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-----------------hhhHHHHHhHhhhhhhhHHhhccCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-----------------VSRAVFYANRSAALEKLASYLSLEK 128 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~lg~~~~~~~~~~~~~~ 128 (229)
.....+...|......++...|...+.+++.+.....- ..+..+...++.. +...|+
T Consensus 113 ~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~------~l~~g~ 186 (388)
T 2ff4_A 113 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA------EIACGR 186 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHH------HHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH------HHHCCC
Confidence 33445555666666778999999999999998533211 0112233344444 788999
Q ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 129 PDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
+.+|+..+..++..+|-+..++..+-.++...|+..+|+..|+++..
T Consensus 187 ~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 187 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.021 Score=48.33 Aligned_cols=103 Identities=7% Similarity=0.050 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC-
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSC--PRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN- 143 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~- 143 (229)
+...+..+-..+.+.|++++|...|++..... |+ ...|..+-.. +.+.|+.++|.+.+++..+..
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd------~~tyn~lI~~------~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR------LRSYGPALFG------FCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC------HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------cceehHHHHH------HHHCCCHHHHHHHHHHHHhcCC
Confidence 45577888889999999999999999987753 43 7788888888 889999999999999988764
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCcH
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILEL--DPNNR 181 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~ 181 (229)
..+..+|..+-.++.+.|+.++|.+.+++..+. .|+..
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence 236778899999999999999999999998654 45433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.012 Score=52.13 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=48.3
Q ss_pred hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 123 YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 123 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
+...|+|+-|+...++|+..-|....+|+.|+.+|..+|+|+.|+-.+..+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 677899999999999999999999999999999999999999999888766
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.04 Score=39.38 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh--c
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT--L 142 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~--~ 142 (229)
+..++.-..++..++-.|+|..|+-++. .+ +. ..+.+..+.| |.++++|.+|+..+++.++ +
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~l--NT-----~Ts~YYk~LC------y~klKdYkkA~~~le~il~~kv 93 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLH---KL--NT-----CTSKYYESLC------YKKKKDYKKAIKSLESILEGKV 93 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHH---TC--CB-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHTTCS
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHH---hc--ch-----HHHHHHHHHH------HHHHHHHHHHHHHHHHHHhccc
Confidence 4444666778889999999999987752 22 22 6777888899 9999999999999999983 2
Q ss_pred ---------------CCCcHHH-HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 143 ---------------NPSYLKV-YQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 143 ---------------~p~~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
+|.+-+. +..+|.++...|+-++|+.++......+|-.+..-.
T Consensus 94 d~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 94 ERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp BCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred ccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 2444444 556799999999999999999999999998776653
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0042 Score=52.39 Aligned_cols=77 Identities=13% Similarity=-0.003 Sum_probs=70.0
Q ss_pred HHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 109 FYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 109 ~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
+...+|.+ ......+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++.
T Consensus 154 ~l~~LGDL------~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~ 227 (497)
T 1ya0_A 154 CLVHLGDI------ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HHHHcccH------HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence 44556666 777788999999999999999999999999999999999999999999999999888999999999
Q ss_pred cCc
Q psy13014 189 VSP 191 (229)
Q Consensus 189 ~~~ 191 (229)
.++
T Consensus 228 ~~f 230 (497)
T 1ya0_A 228 KAL 230 (497)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.07 Score=47.27 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
+.....+...+..+...|+|+-|+.+.++|+...|.. ...|+.|+.| |..+|+|+.|+-.++-+
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPse-----F~tW~~La~v------Yi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDS-----FESWYNLARC------HIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchh-----hHHHHHHHHH------HHHhccHHHHHHHHhcC
Confidence 3445678888999999999999999999999999999 9999999999 99999999999888765
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.11 Score=37.20 Aligned_cols=103 Identities=10% Similarity=0.029 Sum_probs=70.9
Q ss_pred CchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy13014 14 PSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNE 93 (229)
Q Consensus 14 p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~ 93 (229)
|..++...+++++++.. |.+..+...+. .-+.....+-.+.|+...++|.+|+.+++.
T Consensus 30 ~~~~eY~lL~~I~Lyyn-gEY~R~Lf~L~---------------------~lNT~Ts~YYk~LCy~klKdYkkA~~~le~ 87 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLN-GEYTRALFHLH---------------------KLNTCTSKYYESLCYKKKKDYKKAIKSLES 87 (242)
T ss_dssp ----CTHHHHHHHHHHT-TCHHHHHHHHH---------------------TCCBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCChHHHhhhhhhhhhc-chHhHHHHHHH---------------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566677777777 77776655432 223455677788999999999999999999
Q ss_pred HHH--hC--CCCC---------chhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 94 ALR--SC--PRSC---------SVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 94 al~--~~--p~~~---------~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
.+. ++ |+-. ..+..-.+..+|.+ +.+.|+-++||.++.......|
T Consensus 88 il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~l------ltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 88 ILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDL------CTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp HHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHhcccccCcccccccceeeeccchHHHHHHHHHHH------HHHhcCHHHhhhHhhhhcCCcc
Confidence 993 32 2210 01234556778999 9999999999999988776554
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.02 Score=48.38 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
..+..+|........+..|..+|.+|..+.|.+ ...++.+|.+ ....|+.-+|+-+|-+++......+.
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~-----G~~~nqLavl------a~~~~~~l~a~y~y~rsl~~~~Pf~~ 221 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN-----GQPYNQLAIL------ASSKGDHLTTIFYYCRSIAVKFPFPA 221 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB-----SHHHHHHHHH------HHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC-----CchHHHHHHH------HhcccccHHHHHHHHHHHhcCCCChh
Confidence 467789999999999999999999999999999 9999999999 99999999999999999987766777
Q ss_pred HHHHHHHHHHh
Q psy13014 149 VYQRRARLYQQ 159 (229)
Q Consensus 149 ~~~~la~~~~~ 159 (229)
+.-++...+..
T Consensus 222 a~~nL~~~f~~ 232 (497)
T 1ya0_A 222 ASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.28 Score=40.06 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=77.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC---CCcH
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCPR-SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN---PSYL 147 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~ 147 (229)
..+|..++..|+|.+|...+.+..+.... +......+++.....+ |..++++.++...+.++.... +.++
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~------~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT------YHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH------HHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 37899999999999999999988875332 2234467778888888 999999999999999886543 1222
Q ss_pred ----HHHHHHHHHHH-hcccHHHHHHHHHHHHHh
Q psy13014 148 ----KVYQRRARLYQ-QSDKLDEALADYQKILEL 176 (229)
Q Consensus 148 ----~~~~~la~~~~-~~~~~~~A~~~~~~al~~ 176 (229)
.....-|.++. ..++|.+|...|-.+++-
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 34555688999 899999999999998743
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.083 Score=40.59 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=60.5
Q ss_pred HHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 121 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
.+.++.|+.++|++.....++.+|.+...-..+-..+.-.|+++.|...++.+.+++|+....-..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~ 70 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 347889999999999999999999999999999999999999999999999999999998765433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.38 E-value=1.1 Score=41.33 Aligned_cols=130 Identities=7% Similarity=-0.075 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALR-----SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
....+..+-..+.+.|+.++|...|...-. ..|+ ...|..+-.. |.+.|+.++|.+.|++..+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd------vvTYNtLI~G------lck~G~~~eA~~Lf~eM~~ 193 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT------LDMYNAVMLG------WARQGAFKELVYVLFMVKD 193 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC------HHHHHHHHHH------HHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC------HhHHHHHHHH------HHhCCCHHHHHHHHHHHHH
Confidence 345688888999999999999999976543 3454 7889999888 9999999999999999877
Q ss_pred cC-CCcHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 142 LN-PSYLKVYQRRARLYQQSDK-LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 142 ~~-p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
.. ..+..+|..+-.++.+.|+ .++|...|++..+..-.-....++ +.+.........++++....-+
T Consensus 194 ~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~-~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA-VLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH-SCCCHHHHHHHHHHHGGGCCCC
T ss_pred cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc-cccChhhHHHHHHHHHHhCccc
Confidence 54 3367778888788899887 578899999988876443333333 2233233344555555554444
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.12 Score=43.60 Aligned_cols=111 Identities=13% Similarity=-0.034 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHH----------HHHHHHHHhCCCC-CchhhHHHHHhHhhhhhhhHHhhccCChHHHH
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESL----------AKYNEALRSCPRS-CSVSRAVFYANRSAALEKLASYLSLEKPDQSI 133 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~----------~~~~~al~~~p~~-~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~ 133 (229)
.-.+.+|+..+.++...|+..... ..+-.+++...-. .....+.++..+-.. |...+.|++|.
T Consensus 178 ~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRn------YL~~~~y~qA~ 251 (523)
T 4b4t_S 178 LINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRD------FLNNGEVDSAS 251 (523)
T ss_dssp -------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHH------HHHSSCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHH------HHccCcHHHHH
Confidence 335566777777777777665432 2333344432211 112246777777888 99999999999
Q ss_pred HHHHHHHhcCC--Cc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcH
Q psy13014 134 LACSKAITLNP--SY---LKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181 (229)
Q Consensus 134 ~~~~~al~~~p--~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 181 (229)
....++.-... .+ ...++.+|.++.-.++|.+|.+++..|+..-|.+.
T Consensus 252 ~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 252 DFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 99999853221 11 45677889999999999999999999999887654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.71 Score=33.12 Aligned_cols=110 Identities=8% Similarity=-0.071 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy13014 15 SFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEA 94 (229)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 94 (229)
+++...|-+++ .. |+++.|.+..+. .++...|..+|......|+++-|..+|.++
T Consensus 6 ~D~~~rF~LAL---~l-g~l~~A~e~a~~---------------------l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFDLAL---EY-GNLDAALDEAKK---------------------LNDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHHHHH---HT-TCHHHHHHHHHH---------------------HCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChHHHHHHHH---hc-CCHHHHHHHHHH---------------------hCCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 45566666654 45 777777765432 234567999999999999999999999775
Q ss_pred HHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 95 LRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 95 l~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
-.. ..+..+ |...|+-++-....+.+...+- +.....++..+|+++++++.|.+.
T Consensus 61 ~D~-------------~~L~~L------y~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 61 HSF-------------DKLSFL------YLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp TCH-------------HHHHHH------HHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred CCH-------------HHHHHH------HHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 332 222333 4445555554443333333222 122244556677777777776443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.54 Score=36.13 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=46.4
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
..++.|+.++|++.....++.+|.+ +.....+-.. +.-.|++++|..-++-+.+++|....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~d-----a~~R~~LfqL------Lcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKD-----ASLRSSFIEL------LCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcC-----HHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 3456778888888888888888887 7777777777 77778888888888877777776644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.97 Score=37.50 Aligned_cols=105 Identities=14% Similarity=0.060 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh---
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRS-CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT--- 141 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~--- 141 (229)
+.+.....++..+...|++.+|...+.....- ...........++.....+ +...+++.+|...++++..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl------~l~~~d~~~a~~~~~ki~~~~~ 208 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL------SILKGDYSQATVLSRKILKKTF 208 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhhc
Confidence 35667788999999999999999999887543 3333334457778888888 9999999999999998742
Q ss_pred cCCCcH----HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy13014 142 LNPSYL----KVYQRRARLYQQSDKLDEALADYQKILEL 176 (229)
Q Consensus 142 ~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~ 176 (229)
-.+.++ ..+...|.++...++|.+|-.+|..++..
T Consensus 209 ~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 209 KNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 223332 35666799999999999999999988754
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.17 Score=41.77 Aligned_cols=101 Identities=5% Similarity=-0.107 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--CCcH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--PSYL 147 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~ 147 (229)
++..+|..+...|++++|.++|.++........ ...+++..+..+ +...+++..+...+.++-... ..++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~--~kid~~l~~irl------~l~~~d~~~~~~~~~ka~~~~~~~~d~ 204 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG--AKIDVMLTIARL------GFFYNDQLYVKEKLEAVNSMIEKGGDW 204 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC--SHHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHhhhcCCCH
Confidence 577899999999999999999999888654331 246778888888 888999999999999986542 2222
Q ss_pred ----HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Q psy13014 148 ----KVYQRRARLYQQSDKLDEALADYQKILELDP 178 (229)
Q Consensus 148 ----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 178 (229)
......|.++...++|.+|...|..++....
T Consensus 205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 2344568888889999999999988876543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.42 Score=39.47 Aligned_cols=106 Identities=5% Similarity=-0.112 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.++..+|..+... |++..|...|.+..... .........+..+-.++...+++..+...+.++-..
T Consensus 132 ~~~~~la~~~~~~-Gd~~~A~~~~~~~~~~~-------------~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 132 QAWINLGEYYAQI-GDKDNAEKTLGKSLSKA-------------ISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SCCHHHHHHHHHH-CCCTTHHHHHHHHHHHH-------------TCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhc-------------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3677889999999 99999999998765221 123456778888899999999999999999999776
Q ss_pred CCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 98 CPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 98 ~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.....+ .....+....|.. +...++|..|...|-.++...
T Consensus 198 ~~~~~d~~~~~~lk~~~gl~------~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 198 IEKGGDWERRNRYKTYYGIH------CLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HTTCCCTHHHHHHHHHHHHG------GGGTSCHHHHHHHHHHHHHHS
T ss_pred hhcCCCHHHHHHHHHHHHHH------HHHhChHHHHHHHHHHHhccC
Confidence 433322 2234556667778 889999999999998887654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.41 Score=39.05 Aligned_cols=124 Identities=7% Similarity=-0.107 Sum_probs=84.0
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q psy13014 22 FSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPR- 100 (229)
Q Consensus 22 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~- 100 (229)
.+|.+++.. |++.+|...+.+...... .........+++......+...+++.++...+.++......
T Consensus 104 kL~~l~~~~-~~y~~a~~~i~~l~~~~~----------~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 104 RLIALYFDT-ALYTEALALGAQLLRELK----------KLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHT----------TSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHh-hhHHHHHHHHHHHHHHHh----------ccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccC
Confidence 567778888 888888877766553221 11235677788889999999999999999999999776311
Q ss_pred CCc-hhhHHHHHhHhhhhhhhHHhh-ccCChHHHHHHHHHHHhcCCC--c---HHHHHHHHHHHHhccc
Q psy13014 101 SCS-VSRAVFYANRSAALEKLASYL-SLEKPDQSILACSKAITLNPS--Y---LKVYQRRARLYQQSDK 162 (229)
Q Consensus 101 ~~~-~~~~~~~~~lg~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~--~---~~~~~~la~~~~~~~~ 162 (229)
.++ ...+.+...-|.. ++ ..++|..|...|-++++-... + ..+...++.|-.-.++
T Consensus 173 ~~~p~i~a~i~~~~Gi~------~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 173 YCPPKVQGALDLQSGIL------HAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp CCCHHHHHHHHHHHHHH------HHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhhHH------HHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 011 1235556666778 88 899999999999888753321 1 2234445555555444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.39 Score=39.10 Aligned_cols=65 Identities=12% Similarity=0.150 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
....+...++..+...|++.+++..+..++..+|-+ -.+|..+-.+ +...|+..+|++.|+++..
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~-----E~~~~~lm~a------l~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR-----EPLWTQLITA------YYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHH------HHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHH
Confidence 344566778888999999999999999999999998 8899999999 9999999999999988644
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.2 Score=42.26 Aligned_cols=74 Identities=12% Similarity=-0.012 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--CchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRS--CSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
...+..+..+-..|...+.|++|.....++. .|.. ........++.+|.+ +.-.++|.+|.+++..|+..
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI------~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKI------NAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHTSS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHh
Confidence 3556778888889999999999999999885 5543 223346778889999 99999999999999999988
Q ss_pred CCCc
Q psy13014 143 NPSY 146 (229)
Q Consensus 143 ~p~~ 146 (229)
.|.+
T Consensus 300 ap~~ 303 (523)
T 4b4t_S 300 APHN 303 (523)
T ss_dssp CSCS
T ss_pred CCcc
Confidence 7754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=93.18 E-value=0.96 Score=39.86 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRS--------CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
+...|..+|..+.+.++++.|+.+|.++-.. ...+ ......++.. ....|++..|...|.+
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~-----~~~~~~~~~~------a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNN-----KEGLVTLAKD------AETTGKFNLAFNAYWI 748 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCC-----HHHHHHHHHH------HHHcCchHHHHHHHHH
Confidence 4578999999999999999999999876221 1222 3344445555 5556666666555443
Q ss_pred HHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCc
Q psy13014 139 AITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 139 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 180 (229)
. .+ +-..-.+|...+++++|+...+ ...|..
T Consensus 749 ~-----g~---~~~a~~~~~~~~~~~~A~~lA~---~~~~~~ 779 (814)
T 3mkq_A 749 A-----GD---IQGAKDLLIKSQRFSEAAFLGS---TYGLGD 779 (814)
T ss_dssp H-----TC---HHHHHHHHHHTTCHHHHHHHHH---HTTCCH
T ss_pred c-----CC---HHHHHHHHHHcCChHHHHHHHH---HhCCCh
Confidence 2 11 1123344666667776665543 344444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=92.66 E-value=1.4 Score=38.73 Aligned_cols=48 Identities=13% Similarity=0.022 Sum_probs=38.7
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHH
Q psy13014 76 NALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139 (229)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~a 139 (229)
......|+++.|.+..+ ..++ ...|..+|.. +.+.++++.|+.+|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~-----~~~~-----~~~W~~la~~------al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLT-----DESA-----EMKWRALGDA------SLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHT-----TCCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHH-----hhCc-----HhHHHHHHHH------HHHcCCHHHHHHHHHHc
Confidence 34567899999888753 2244 8899999999 99999999999999875
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=91.82 E-value=2.2 Score=37.01 Aligned_cols=95 Identities=9% Similarity=-0.069 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
.....++......+...++...+.+......+ ......++.. .+..|+++.|..++...-........
T Consensus 253 ~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~r~------Alr~~d~~~a~~~~~~l~~~~~~~~r 320 (618)
T 1qsa_A 253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS------TSLIERRVRM------ALGTGDRRGLNTWLARLPMEAKEKDE 320 (618)
T ss_dssp HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC------HHHHHHHHHH------HHHHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHhccccCCC------hHHHHHHHHH------HHHCCCHHHHHHHHHHccccccccHh
Confidence 34444555555555455666677766554333 2233334334 44669999999999875554345688
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
..|-+|.++..+|+.++|...|+++..
T Consensus 321 ~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 321 WRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999875
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.63 Score=43.43 Aligned_cols=117 Identities=11% Similarity=-0.032 Sum_probs=80.1
Q ss_pred cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH----------HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc
Q psy13014 12 KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ----------FIFHVLFYLFCSQKLEQTAISLKDEGNALFRL 81 (229)
Q Consensus 12 ~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (229)
.-|.++...|.+|.+++.. |++++|..+|.++...+. ......... ......+..|......+.+.
T Consensus 837 ~~~~~~~~~yl~g~~~L~~-ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~---~~~~~l~~YY~hv~~LFe~~ 912 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKS-KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY---HHQNLLSCYYLHLSKKLFEE 912 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT---TSCCSSHHHHHHHHHHHHHT
T ss_pred hccCCcHHHHHHHHHHHhc-CCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc---cccccHHHHHHHHHHHHHHc
Confidence 4567777889999999999 999999999987642110 000000000 00111234677777888889
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHH
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSK 138 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~ 138 (229)
+.++.+++....|+...+..........|.++=.. +..+|+|++|...+..
T Consensus 913 ~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~------~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 913 SAYIDALEFSLLADASKETDDEDLSIAITHETLKT------ACAAGKFDAAHVALMV 963 (1139)
T ss_dssp SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH------HHHHCCSGGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHH------HHhhCCHHHHHHHHHh
Confidence 99999999999999987654322234467777777 8889999999777643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.21 Score=46.55 Aligned_cols=100 Identities=7% Similarity=-0.011 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC--C---------------chhhHHHHHhHhhhhhhhHHhhccCC
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSC-PRS--C---------------SVSRAVFYANRSAALEKLASYLSLEK 128 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~--~---------------~~~~~~~~~~lg~~~~~~~~~~~~~~ 128 (229)
++...+.+|.+++..|++++|..+|+++-..- ... . ....+..|..+..+ +.+.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~L------Fe~~~~ 914 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKK------LFEESA 914 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHH------HHHTSC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHH------HHHcCC
Confidence 34455889999999999999999998873221 100 0 01124567777778 889999
Q ss_pred hHHHHHHHHHHHhcCCC-cH----HHHHHHHHHHHhcccHHHHHHHHHH
Q psy13014 129 PDQSILACSKAITLNPS-YL----KVYQRRARLYQQSDKLDEALADYQK 172 (229)
Q Consensus 129 ~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~~~~~~~~A~~~~~~ 172 (229)
++.+++....|++..+. +. ..|.++=..+..+|+|++|...+..
T Consensus 915 ~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 915 YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 99999999999987643 32 2577777888899999999777644
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.02 E-value=2.7 Score=30.10 Aligned_cols=78 Identities=5% Similarity=0.102 Sum_probs=57.5
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC--------CCcHH
Q psy13014 77 ALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN--------PSYLK 148 (229)
Q Consensus 77 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~ 148 (229)
...+.|+++.|.+..+.. ++ ...|..+|.. .+..|+++-|+.+|.++-... -.+..
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~-----~~~Wk~Lg~~------AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----ND-----SITWERLIQE------ALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CC-----HHHHHHHHHH------HHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHH
Confidence 446789999999987654 44 8899999999 999999999999998753321 22334
Q ss_pred HHHHHHHHHHhcccHHHHHHHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~ 170 (229)
-+..++.+-...|++.-|...+
T Consensus 78 ~L~kla~iA~~~g~~n~af~~~ 99 (177)
T 3mkq_B 78 KLSKMQNIAQTREDFGSMLLNT 99 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCccHHHHHHHH
Confidence 4556666777777777766554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.41 E-value=11 Score=31.07 Aligned_cols=108 Identities=6% Similarity=-0.081 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR- 96 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~- 96 (229)
.....++.++... |++.+|...+.....- .............+......+...+++.+|...+.++-.
T Consensus 138 rl~~~La~i~e~~-g~~~eA~~iL~~l~~E----------t~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 138 RVTKDLVEIKKEE-GKIDEAADILCELQVE----------TYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHHH-TCHHHHHHHHHHHHHH----------HCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cCHHHHHHHHHHHHHH----------HHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3456678888888 9999998877655411 011124456778899999999999999999999998743
Q ss_pred hCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 97 SCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 97 ~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+..+. ......+...|.. +...++|.+|-.+|..+...
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~------~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKI------SLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHH------HHHHCCHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHH------HHHhhhHHHHHHHHHHHHhc
Confidence 2222111 2245667778888 99999999999999888764
|
| >3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A | Back alignment and structure |
|---|
Probab=86.78 E-value=2.4 Score=25.50 Aligned_cols=31 Identities=13% Similarity=0.331 Sum_probs=28.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q psy13014 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRS 101 (229)
Q Consensus 71 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 101 (229)
-..+|..+...|++++|+.+|-+|+...|..
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 3478999999999999999999999999986
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.91 E-value=15 Score=34.06 Aligned_cols=100 Identities=8% Similarity=-0.094 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
++..+-..+... |++++|...|........ ....-+...|..+-..+.+.|+.++|.+.|++.....
T Consensus 129 TynaLIdglcK~-G~leeA~~Lf~eM~~m~~------------kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G 195 (1134)
T 3spa_A 129 RLLAFFKCCLLT-DQLPLAHHLLVVHHGQRQ------------KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195 (1134)
T ss_dssp HHHHHHHHHHHH-TCHHHHHHHHHHHHHSHH------------HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHhh------------cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 444555567777 999999988865431100 1122356688889999999999999999999988763
Q ss_pred --CCCCchhhHHHHHhHhhhhhhhHHhhccCCh-HHHHHHHHHHHhcC
Q psy13014 99 --PRSCSVSRAVFYANRSAALEKLASYLSLEKP-DQSILACSKAITLN 143 (229)
Q Consensus 99 --p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~-~~A~~~~~~al~~~ 143 (229)
|+ ...|..+-.+ +.+.|+. +.|...+++.....
T Consensus 196 ~~PD------vvTYntLI~g------lcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 196 LTPD------LLSYAAALQC------MGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp CCCC------HHHHHHHHHH------HHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCc------HHHHHHHHHH------HHhCCCcHHHHHHHHHHHHHcC
Confidence 43 7778888778 8888885 78889999887764
|
| >3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.03 E-value=8.1 Score=28.18 Aligned_cols=53 Identities=11% Similarity=0.065 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhh
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAA 116 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~ 116 (229)
..+.....+-+|..+...++|.+|.+.+..|++..|......+..+...+--+
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~ 62 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPV 62 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHH
Confidence 34667788999999999999999999999999998876443344444444333
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.21 E-value=8.1 Score=33.48 Aligned_cols=128 Identities=6% Similarity=-0.130 Sum_probs=79.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHH
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQ 151 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (229)
...+.......+.+.|...+........-+ .......+..+|.- ....+...++...+.+.....+++...-.
T Consensus 218 ~~~~~~rlar~d~~~A~~~~~~~~~~~~~~-~~~~~~~~~~ia~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 290 (618)
T 1qsa_A 218 AAVAFASVARQDAENARLMIPSLAQAQQLN-EDQIQELRDIVAWR------LMGNDVTDEQAKWRDDAIMRSQSTSLIER 290 (618)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHT------SCSTTCCHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHhhhhccCCC-HHHHHHHHHHHHHH------HHHcCCChHHHHHHHhccccCCChHHHHH
Confidence 344555556668889999888776543332 22234455555655 55566567888888887665554444333
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 152 RRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 152 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
..+.+ ...|+++.|..+|...-...+......+-+|+.. +..++..+|...|..+
T Consensus 291 ~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~-~~~g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 291 RVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLL-LERGREAEAKEILHQL 345 (618)
T ss_dssp HHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred HHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 44444 4669999999999776554445667778888876 6666655555444443
|
| >2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=80.12 E-value=5.4 Score=24.54 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.+.+..+...|...-+.|+|.+|+.+|..+++.
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345556667777788888888888888777664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 229 | ||||
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-13 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1kt1a1 | 168 | a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M | 5e-12 | |
| d2fbna1 | 153 | a.118.8.1 (A:22-174) Putative 70 kda peptidylproly | 1e-11 | |
| d1p5qa1 | 170 | a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d | 5e-10 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 6e-10 | |
| d1ihga1 | 169 | a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau | 2e-09 | |
| d1elwa_ | 117 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 7e-09 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-08 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 3e-06 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 8e-08 | |
| d1a17a_ | 159 | a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo | 2e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-07 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 7e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 1e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 0.002 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 2e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 2e-05 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 2e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 5e-05 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 2e-04 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-04 |
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 63.8 bits (154), Expect = 4e-13
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 11/118 (9%)
Query: 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSL 126
+A LK++GN LF ++ E+ A Y A+ P AV+Y NR+ YL +
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YLKM 51
Query: 127 EKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++P+Q++ C +A+ L+ +K + + + + DEA+A+ Q+ L R +
Sbjct: 52 QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.7 bits (156), Expect = 6e-13
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
NAL +E+ YN ALR CP + ++++
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI-----------KREQGNIEEAVR 326
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
KA+ + P + + A + QQ KL EAL Y++ + + P DAY
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 2e-08
Identities = 10/68 (14%), Positives = 23/68 (33%)
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+E + + C + P V + ++ Q +LD + ++
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 177 DPNNRDAY 184
+P +AY
Sbjct: 63 NPLLAEAY 70
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 1e-05
Identities = 11/89 (12%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 71 LKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPD 130
+ + ++ + + + R P + S+ + + D
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDN-----TGVLLLLSSI------HFQCRRLD 50
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQ 159
+S + AI NP + Y +Y++
Sbjct: 51 RSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 3e-05
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
N E++ Y +AL P A ++N ++ L++ K ++++
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEF-----AAAHSNLASVLQQQ------GKLQEALM 360
Query: 135 ACSKAITLNPSYLKVYQRRARLYQQ 159
+AI ++P++ Y ++
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.6 bits (96), Expect = 3e-05
Identities = 25/185 (13%), Positives = 53/185 (28%), Gaps = 6/185 (3%)
Query: 6 YQQELSKNPSFLYTIY-----FSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFC 60
+ +NP + E + +
Sbjct: 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 61 SQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL 120
+ A + N + ++C + N + A L
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175
Query: 121 AS-YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPN 179
+ + + +I KA+TL+P++L Y + +++ D A+A Y + L L PN
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Query: 180 NRDAY 184
+ +
Sbjct: 236 HAVVH 240
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Score = 60.0 bits (144), Expect = 5e-12
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANR----SAAL 117
+KLEQ A +K++G F+ ++ +++ +Y + + +S A+ +A L
Sbjct: 10 EKLEQ-AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 68
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
YL L + +++ C KA+ L+ + K RR ++ + A D++K+LE++
Sbjct: 69 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128
Query: 178 PNNRDAY 184
P N+ A
Sbjct: 129 PQNKAAR 135
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Score = 58.5 bits (140), Expect = 1e-11
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL----- 120
Q+A +K+EGN F+ N+ +E++ KY EAL + + +
Sbjct: 15 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 74
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
Y + ++I SK + ++ + +K + L+EA + K L+PNN
Sbjct: 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134
Query: 181 RDAY 184
D
Sbjct: 135 LDIR 138
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 5e-10
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA----NRSAAL 117
+KLEQ + +K+ G F+ ++ ++L +Y + + S S ++ L
Sbjct: 8 EKLEQ-STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHL 66
Query: 118 EKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
+L L+ +I +C+KA+ L+ + K RR + + + A AD+QK+L+L
Sbjct: 67 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126
Query: 178 PNNRDAY 184
PNN+ A
Sbjct: 127 PNNKAAK 133
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 6e-10
Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 4/115 (3%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ A+ K+ GN ++ + +L Y++A P + + + EK
Sbjct: 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY----ITNQAAVYFEKGDYNKC 57
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
E +++I + K Y R Y + +K +A+ Y K L
Sbjct: 58 RELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.8 bits (125), Expect = 2e-09
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 62 QKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA-----NRSAA 116
K+ + LK+ GN F+ W ++ KY + LR S + + A S
Sbjct: 21 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCV 80
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
L A L + ++ +C +A+ ++PS K RRA+ +Q + D+ALAD +K E+
Sbjct: 81 LNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140
Query: 177 DPNNRDAY 184
P ++
Sbjct: 141 APEDKAIQ 148
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 7e-09
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ LK++GN + ++L Y+EA++ P + + A
Sbjct: 1 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKK---------- 50
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
++ K + L P + K Y R+A + ++ +EA Y++ L+ + NN
Sbjct: 51 -GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK 108
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 50.8 bits (121), Expect = 3e-08
Identities = 10/65 (15%), Positives = 21/65 (32%)
Query: 122 SYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNR 181
+ LS + Q++ +AI +P + L + A + ++L P
Sbjct: 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 64
Query: 182 DAYVA 186
Sbjct: 65 PGASQ 69
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 3e-08
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
AISL +EG W +L ++ + N Y L+
Sbjct: 5 AISLWNEGVLAADKKDWKGALDAFSAVQD--------PHSRICFNIGCM------YTILK 50
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNN 180
++ A +++I + Y +R LY Q++K D A+ D ++ L N
Sbjct: 51 NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.1 bits (103), Expect = 3e-06
Identities = 13/116 (11%), Positives = 32/116 (27%), Gaps = 5/116 (4%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVF-----YANRSAALEKLASYLSLEKP 129
G L +E+ + ++ A++ L L +
Sbjct: 43 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 102
Query: 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
+Q I + +V A +Y + ++ +A + R + +
Sbjct: 103 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKI 158
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.6 bits (117), Expect = 8e-08
Identities = 18/188 (9%), Positives = 47/188 (25%), Gaps = 15/188 (7%)
Query: 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLE 65
+ L + + + F+ + + + + Y C
Sbjct: 132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLP-- 189
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANR---------SAA 116
L + ++ + L K E +++ + ++ ++ +R
Sbjct: 190 ----QLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRC 245
Query: 117 LEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILEL 176
+ L+ +S + N L R E L + + +
Sbjct: 246 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305
Query: 177 DPNNRDAY 184
DP
Sbjct: 306 DPMRAAYL 313
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 2e-07
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 11/119 (9%)
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS 125
+ A LK + N F+ + ++ Y++A+ P + A
Sbjct: 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRT---------- 57
Query: 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
E ++ ++AI L+ Y+K Y RRA K AL DY+ ++++ P+++DA
Sbjct: 58 -ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 115
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 2e-07
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 13/117 (11%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+ G + S + + + + C V R
Sbjct: 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYR-------------N 166
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ Q+ A L PS + Y + A L + Y + + + A
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAS 223
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 7e-05
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 131 QSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
QS +A L A ++ L + YQK+L D
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDK 54
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 1e-05
Identities = 18/166 (10%), Positives = 49/166 (29%), Gaps = 6/166 (3%)
Query: 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALF 79
+ + I+ + H+ + + F + + + + +
Sbjct: 98 MNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ 157
Query: 80 RLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKA 139
W L ++ L+ R+ + R + Y ++ + +
Sbjct: 158 EFKLWDNELQYVDQLLKEDVRN-----NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 212
Query: 140 ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185
I L P + + Q L + ++L+L P++ Y+
Sbjct: 213 IKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYL 257
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 138 KAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
I + + VY + Q+ ++ + A + +EL+ N +
Sbjct: 34 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVW 80
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.002
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 121 ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK-LDEALADYQKILELDPN 179
A E+ +++ AI LN + V+ R L + K L E + I+E P
Sbjct: 51 AVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK 110
Query: 180 NRDAY 184
N +
Sbjct: 111 NYQVW 115
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 42.1 bits (97), Expect = 2e-05
Identities = 16/187 (8%), Positives = 43/187 (22%), Gaps = 8/187 (4%)
Query: 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLE 65
+ Q L+ P + L + + + L
Sbjct: 60 FSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 119
Query: 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEK------ 119
+ ++ D A + + + +S +
Sbjct: 120 RDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVE 179
Query: 120 --LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELD 177
L + ++ + +L + + Y LD A A ++ + +
Sbjct: 180 FYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239
Query: 178 PNNRDAY 184
+N +
Sbjct: 240 VHNFVEH 246
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 13/111 (11%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSIL 134
+ Q+ E+ Y++ ++S + ++ L L+ +
Sbjct: 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGL----CQLAATDAVAAAR 220
Query: 135 ACSKAITLNPSYLKVYQRR-------ARLYQQSDKLDEALADYQKILELDP 178
+ + +P++ + A S++L E ++ + LD
Sbjct: 221 TLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 2e-05
Identities = 13/111 (11%), Positives = 30/111 (27%), Gaps = 10/111 (9%)
Query: 76 NALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILA 135
N L + + K+ + S S + + + I+
Sbjct: 7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTR--------YNDDIRKGIVL 58
Query: 136 CSKA--ITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184
+ A + + ++AL + +L+ +P N A
Sbjct: 59 LEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 109
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 5e-05
Identities = 19/192 (9%), Positives = 46/192 (23%), Gaps = 25/192 (13%)
Query: 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNA 77
+ ++ + R + L K +
Sbjct: 86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 145
Query: 78 LFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKL----------------- 120
L + + E + A+R P S +
Sbjct: 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 205
Query: 121 --------ASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQK 172
A+ + + ++++ A +A+ L P Y++ EA+ + +
Sbjct: 206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 265
Query: 173 ILELDPNNRDAY 184
L + +R
Sbjct: 266 ALNMQRKSRGPR 277
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 2e-04
Identities = 9/66 (13%), Positives = 27/66 (40%)
Query: 110 YANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALAD 169
+ E+ L ++L A+ +P +++ +Q ++++ A++
Sbjct: 16 LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISA 75
Query: 170 YQKILE 175
++ LE
Sbjct: 76 LRRCLE 81
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (87), Expect = 4e-04
Identities = 12/115 (10%), Positives = 33/115 (28%), Gaps = 1/115 (0%)
Query: 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE 127
+ + K + + + + + N + A L + E
Sbjct: 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA-NNHFLQGQWRNIARAQILLGEFEPAE 271
Query: 128 KPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182
+ + ++++ L + +LY Q+ + +A L+L
Sbjct: 272 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF 326
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.86 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.84 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.84 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.81 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.81 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.81 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.79 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.79 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.76 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.76 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.74 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.73 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.71 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.71 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.7 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.69 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.68 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.64 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.63 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.61 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.54 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.52 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.52 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.48 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.46 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.45 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.44 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.34 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.23 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.99 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.87 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.83 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.77 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.7 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.36 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.2 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.34 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 88.29 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.88 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 82.55 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 81.72 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.9e-25 Score=174.02 Aligned_cols=194 Identities=10% Similarity=0.107 Sum_probs=170.2
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|+++++.+|+++.+++.+|.++... |++++|...|.+++ ...|.++..+..+|.++...|++
T Consensus 41 ~~~~al~~~P~~~~a~~~lg~~~~~~-~~~~~A~~~~~~al----------------~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 41 LFEAAVQQDPKHMEAWQYLGTTQAEN-EQELLAISALRRCL----------------ELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHHHHhhh----------------ccccccccccccccccccccccc
Confidence 57889999999999999999999999 99999999999988 46677888999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCc----------------------------------------------hhhHHHHHhHhhhhh
Q psy13014 85 SESLAKYNEALRSCPRSCS----------------------------------------------VSRAVFYANRSAALE 118 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~----------------------------------------------~~~~~~~~~lg~~~~ 118 (229)
++|+..+++++...|.... ...+.++..+|.+
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~-- 181 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL-- 181 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH--
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH--
Confidence 9999999888887775311 0024567788888
Q ss_pred hhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhh
Q psy13014 119 KLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEK 198 (229)
Q Consensus 119 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 198 (229)
+...|++++|+..+++++..+|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++.++|.++ .+++++
T Consensus 182 ----~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~g~~ 256 (323)
T d1fcha_ 182 ----FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC-INLGAH 256 (323)
T ss_dssp ----HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHTCH
T ss_pred ----HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH-HHCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred hhccccccccc-ccCCCcccccCCC
Q psy13014 199 NGATKLSPDVF-LHPGQPQIQHNPE 222 (229)
Q Consensus 199 ~~a~~~~~~~~-~~p~~~~~~~~~~ 222 (229)
.+|+..|.+++ ++|++........
T Consensus 257 ~~A~~~~~~al~l~p~~~~~~~~~~ 281 (323)
T d1fcha_ 257 REAVEHFLEALNMQRKSRGPRGEGG 281 (323)
T ss_dssp HHHHHHHHHHHHHHHTC------CC
T ss_pred HHHHHHHHHHHHhCCcChhhhhhhH
Confidence 99999999999 9998877655443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=5.4e-24 Score=170.91 Aligned_cols=184 Identities=14% Similarity=0.139 Sum_probs=161.6
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
++++++.+|+++.++..+|.++... |++++|...+++.. ...+..+..+..+|.++...|+++
T Consensus 192 ~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~ 254 (388)
T d1w3ba_ 192 FEKAVTLDPNFLDAYINLGNVLKEA-RIFDRAVAAYLRAL----------------SLSPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTT-TCTTHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCcccHHHHHHHhhhhhcc-ccHHHHHHHHHHhH----------------HHhhhHHHHHHHHHHHHHHCCCHH
Confidence 4566777777777777777777777 77777777776665 445667778889999999999999
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
+|+..|+++++++|++ +.++..+|.+ +...|++++|+..+++++...|.+...+..+|.++...|++++
T Consensus 255 ~A~~~~~~al~~~p~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 323 (388)
T d1w3ba_ 255 LAIDTYRRAIELQPHF-----PDAYCNLANA------LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHHHHHHTCSSC-----HHHHHHHHHH------HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhCCCC-----HHHHHHHHHH------HHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHH
Confidence 9999999999999998 9999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 166 ALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 166 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
|+..|+++++++|+++.++.++|.++ .+.+++.+|+..|.+++ ++|++....
T Consensus 324 A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~l~P~~~~a~ 376 (388)
T d1w3ba_ 324 AVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHH-HTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999998 88899999999999999 999876543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.8e-23 Score=166.26 Aligned_cols=179 Identities=11% Similarity=0.092 Sum_probs=145.0
Q ss_pred hcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC-HHHH
Q psy13014 9 ELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ-WSES 87 (229)
Q Consensus 9 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A 87 (229)
++..+|++..++..+|.++... +.+++|...+++++ ...|.+..+|+.+|.++...+. +++|
T Consensus 35 ~I~~~p~~~~a~~~~~~~~~~~-e~~~~Al~~~~~ai----------------~lnP~~~~a~~~r~~~l~~l~~~~~ea 97 (315)
T d2h6fa1 35 QIIYSDKFRDVYDYFRAVLQRD-ERSERAFKLTRDAI----------------ELNAANYTVWHFRRVLLKSLQKDLHEE 97 (315)
T ss_dssp EECCCHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHH----------------HHCCCChHHHHHHHHHHHHhCcCHHHH
Confidence 4566888888888888888777 88888888888887 5778888888888888887764 8888
Q ss_pred HHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHH
Q psy13014 88 LAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEAL 167 (229)
Q Consensus 88 ~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 167 (229)
+..+++++..+|++ ..+|.++|.+ +..+|++++|+.+++++++++|++..+|.++|.++..+|++++|+
T Consensus 98 l~~~~~al~~~p~~-----~~a~~~~~~~------~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 98 MNYITAIIEEQPKN-----YQVWHHRRVL------VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHhh-----hhHHHHHhHH------HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHH
Confidence 88888888888888 8888888888 888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCcHHHHHHhccCchHHHh------hhhhccccccccc-ccCCCcc
Q psy13014 168 ADYQKILELDPNNRDAYVATKVSPDLKLK------EKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 168 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~------~~~~a~~~~~~~~-~~p~~~~ 216 (229)
.+++++++++|.+..+|.+++.++ .+++ .+.+|+..+.+++ ++|++..
T Consensus 167 ~~~~~al~~~p~n~~a~~~r~~~l-~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~ 221 (315)
T d2h6fa1 167 QYVDQLLKEDVRNNSVWNQRYFVI-SNTTGYNDRAVLEREVQYTLEMIKLVPHNES 221 (315)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH-HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHCCccHHHHHHHHHHH-HHccccchhhhhHHhHHHHHHHHHhCCCchH
Confidence 888888888888888888888775 3333 3567788888887 8886644
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.2e-23 Score=164.06 Aligned_cols=179 Identities=12% Similarity=0.114 Sum_probs=160.7
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccC
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFS-EIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQ 83 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 83 (229)
.|++++++||++..+++.+|.++..+ | ++++|...+++++ ...|++..+|..+|.++..+|+
T Consensus 65 ~~~~ai~lnP~~~~a~~~r~~~l~~l-~~~~~eal~~~~~al----------------~~~p~~~~a~~~~~~~~~~l~~ 127 (315)
T d2h6fa1 65 LTRDAIELNAANYTVWHFRRVLLKSL-QKDLHEEMNYITAII----------------EEQPKNYQVWHHRRVLVEWLRD 127 (315)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCChHHHHHHHHHHHHh-CcCHHHHHHHHHHHH----------------HHHHhhhhHHHHHhHHHHhhcc
Confidence 47889999999999999999999988 6 5899999999988 6889999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc-
Q psy13014 84 WSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK- 162 (229)
Q Consensus 84 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~- 162 (229)
+++|+..++++++++|.+ ..+|.++|.+ +..+|++++|+.+++++++++|.+..+|+++|.++...+.
T Consensus 128 ~~eAl~~~~kal~~dp~n-----~~a~~~~~~~------~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 128 PSQELEFIADILNQDAKN-----YHAWQHRQWV------IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp CTTHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhhhhhhhcc-----hHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence 999999999999999999 9999999999 9999999999999999999999999999999999887765
Q ss_pred -----HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 163 -----LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 163 -----~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
+++|+..+.++++++|++..++..++.++ .. ....++.+.+..++ +.|+
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll-~~-~~~~~~~~~~~~~~~l~~~ 251 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QD-RGLSKYPNLLNQLLDLQPS 251 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TT-TCGGGCHHHHHHHHHHTTT
T ss_pred chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH-Hh-cChHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999998876 32 22455555555555 5553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=1.9e-22 Score=161.70 Aligned_cols=164 Identities=21% Similarity=0.263 Sum_probs=154.8
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQW 84 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (229)
.|++++..+|.....++.+|.++... |++++|...|++++ ...|+++.++..+|.++...|++
T Consensus 225 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al----------------~~~p~~~~~~~~l~~~~~~~~~~ 287 (388)
T d1w3ba_ 225 AYLRALSLSPNHAVVHGNLACVYYEQ-GLIDLAIDTYRRAI----------------ELQPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HTCSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHhHHHhhhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH----------------HhCCCCHHHHHHHHHHHHHcCCH
Confidence 35677888999999999999999999 99999999999887 56788889999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHH
Q psy13014 85 SESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLD 164 (229)
Q Consensus 85 ~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 164 (229)
.+|+..++.++...|.+ ...+..+|.+ +...|++++|+..|+++++++|+++.+++++|.++..+|+++
T Consensus 288 ~~A~~~~~~~~~~~~~~-----~~~~~~l~~~------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 356 (388)
T d1w3ba_ 288 AEAEDCYNTALRLCPTH-----ADSLNNLANI------KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356 (388)
T ss_dssp HHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHhhhccCCcc-----chhhhHHHHH------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999 9999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 165 EALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 165 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
+|+.+|+++++++|+++.++.++|.++ .+++|
T Consensus 357 ~A~~~~~~al~l~P~~~~a~~~lg~~~-~~~~D 388 (388)
T d1w3ba_ 357 EALMHYKEAIRISPTFADAYSNMGNTL-KEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHH-HHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC
Confidence 999999999999999999999999998 66553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=9.1e-21 Score=149.96 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=149.2
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH--------------------------------HHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQ--------------------------------FIF 52 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~~~ 52 (229)
.|.++++++|++...++.+|.++... |++++|...+++++...+ ...
T Consensus 75 ~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (323)
T d1fcha_ 75 ALRRCLELKPDNQTALMALAVSFTNE-SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 153 (323)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHH
T ss_pred HHHhhhcccccccccccccccccccc-ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHH
Confidence 57889999999999999999999999 999999999887653211 000
Q ss_pred HHHHh-hhhhhhHH--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCCh
Q psy13014 53 HVLFY-LFCSQKLE--QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKP 129 (229)
Q Consensus 53 ~~~~~-~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 129 (229)
..... .......| ..+.++..+|.++...|++++|+..|++++..+|++ +.+|..+|.+ +..+|++
T Consensus 154 ~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~g~~ 222 (323)
T d1fcha_ 154 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-----YLLWNKLGAT------LANGNQS 222 (323)
T ss_dssp HHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHTTCH
T ss_pred HHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccccc-----ccchhhhhhc------ccccccc
Confidence 00000 01111112 245678899999999999999999999999999999 9999999999 9999999
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHH-hhhhhccccc
Q psy13014 130 DQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKL-KEKNGATKLS 205 (229)
Q Consensus 130 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~~a~~~~ 205 (229)
++|+..|+++++++|+++.+++.+|.++..+|++++|+..|+++++++|++...+..++.++ ..+ ..+..++..+
T Consensus 223 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-~~~~~~l~~al~~~ 298 (323)
T d1fcha_ 223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS-ENIWSTLRLALSML 298 (323)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHH-HHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999998888887 333 2334444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=5.6e-21 Score=129.96 Aligned_cols=111 Identities=27% Similarity=0.413 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
-+...|..++..|+|++|+..|++++..+|.+ +.+|.++|.+ +..+|++++|+..+.++++++|+++.+
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~al~~~p~~~~~ 73 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN-----HVLYSNRSAA------YAKKGDYQKAYEDGCKTVDLKPDWGKG 73 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc-----hhhhhccccc------ccccccccccchhhhhHHHhccchhhH
Confidence 35678999999999999999999999999999 9999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
|+++|.++..+|++++|+..|+++++++|+++.++..++.+.
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999998887653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.7e-20 Score=131.56 Aligned_cols=115 Identities=30% Similarity=0.507 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+.+..+...|+.+++.|+|++|+..|++++.++|++ +.+|.++|.+ ++.+|++++|+.+|+++++++|+
T Consensus 8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~-----~~~~~~lg~~------~~~~~~~~~A~~~~~kal~~~p~ 76 (159)
T d1a17a_ 8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN-----AIYYGNRSLA------YLRTECYGYALGDATRAIELDKK 76 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhh-----hhhhhhhHHH------HHhccccchHHHHHHHHHHHccc
Confidence 556678889999999999999999999999999999 9999999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
++.+|+++|.++..+|++++|+.++++++.++|+++.++..++.+.
T Consensus 77 ~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 77 YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122 (159)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888775
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=2.5e-21 Score=148.63 Aligned_cols=174 Identities=12% Similarity=-0.023 Sum_probs=144.6
Q ss_pred CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q psy13014 13 NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYN 92 (229)
Q Consensus 13 ~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 92 (229)
+|+...+++.+|.++... |++++|...|++++ ...|+++.+++.+|.++..+|++++|+..|+
T Consensus 33 ~~~~a~~~~~~G~~y~~~-g~~~~A~~~~~~al----------------~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 33 DDERAQLLYERGVLYDSL-GLRALARNDFSQAL----------------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHhh----------------ccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 556677899999999999 99999999999988 5778889999999999999999999999999
Q ss_pred HHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhccc----------
Q psy13014 93 EALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDK---------- 162 (229)
Q Consensus 93 ~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---------- 162 (229)
+++.++|++ +.++.++|.+ +..+|++++|+..++++++++|++......++.++...+.
T Consensus 96 ~al~~~p~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 96 SVLELDPTY-----NYAHLNRGIA------LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp HHHHHCTTC-----THHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHhhh-----hhhHHHHHHH------HHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999998 8999999999 9999999999999999999999988877766666554433
Q ss_pred --------------------------HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 163 --------------------------LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 163 --------------------------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
++.+...+.......|....++.++|.++ ...+++.+|++.|.+++ .+|+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 165 FEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY-LSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred hhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHcCCCCH
Confidence 33333444444445566666777788887 78888999999999999 888775
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.81 E-value=6e-19 Score=125.40 Aligned_cols=128 Identities=26% Similarity=0.283 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-----------hhhHHHHHhHhhhhhhhHHhhccCChHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-----------VSRAVFYANRSAALEKLASYLSLEKPDQ 131 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~~~lg~~~~~~~~~~~~~~~~~ 131 (229)
...+.+..+...|..++..|+|.+|+..|.+++...+.... .....++.++|.| |+.+|++++
T Consensus 12 e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~------~~~l~~~~~ 85 (153)
T d2fbna1 12 EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC------YNKNKDYPK 85 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHH------HHHhcccch
Confidence 44566778889999999999999999999999998765432 1234678899999 999999999
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 132 SILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 132 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
|+.++.++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..+...+..+. .++++
T Consensus 86 Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~-~kl~~ 150 (153)
T d2fbna1 86 AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV-NKLKE 150 (153)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHHHH
T ss_pred hhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876 55554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=2.1e-19 Score=132.56 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
..++..|..+... |+++.|...|.+.. +.++.+++++|.++..+|++++|+..|++++++
T Consensus 6 ~~l~~~g~~~~~~-~d~~~Al~~~~~i~-------------------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l 65 (192)
T d1hh8a_ 6 ISLWNEGVLAADK-KDWKGALDAFSAVQ-------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 65 (192)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHTSS-------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCHHHHHHHHHhcC-------------------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 4567789999999 99999999886532 234678999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc----------------HHHHHHHHHHHHhcc
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY----------------LKVYQRRARLYQQSD 161 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~~ 161 (229)
+|++ +.+|.++|.+ +..+|++++|+.+|++++...+.+ ..+++++|.++..+|
T Consensus 66 dp~~-----~~a~~~~g~~------~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~ 134 (192)
T d1hh8a_ 66 DKHL-----AVAYFQRGML------YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 134 (192)
T ss_dssp CTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred hhhh-----hhhHHHHHHH------HHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCC
Confidence 9999 9999999999 999999999999999999865543 478899999999999
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
++++|++.+.+++.+.|+.......
T Consensus 135 ~~~~A~~~l~~A~~~~~~~~~~~~~ 159 (192)
T d1hh8a_ 135 EWKKAEEQLALATSMKSEPRHSKID 159 (192)
T ss_dssp CHHHHHHHHHHHHTTCCSGGGGHHH
T ss_pred CHHHHHHHHHHHHhcCCCcchHHHH
Confidence 9999999999999999986544443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=7.6e-19 Score=127.04 Aligned_cols=127 Identities=24% Similarity=0.341 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc----------hhhHHHHHhHhhhhhhhHHhhccCChHHHH
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS----------VSRAVFYANRSAALEKLASYLSLEKPDQSI 133 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~ 133 (229)
.-..+..+...|..++..|+|++|+..|++++...|.... .....++.++|.| |+++|++++|+
T Consensus 9 k~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~------y~k~~~~~~A~ 82 (170)
T d1p5qa1 9 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC------HLKLQAFSAAI 82 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHH------HHhhhhccccc
Confidence 3456778889999999999999999999999999876532 2345678899999 99999999999
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 134 LACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 134 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
.+++++|.++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+...++.+. .++++
T Consensus 83 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~-~~~~~ 145 (170)
T d1p5qa1 83 ESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ-QRIRR 145 (170)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH-HHHHH
T ss_pred chhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887 44444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=3.2e-19 Score=136.62 Aligned_cols=118 Identities=15% Similarity=0.097 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
..+..+.+++.+|.++...|++++|+..|++++.++|++ +.+|+++|.+ +..+|++++|+..|++++++
T Consensus 32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~-----~~a~~~lg~~------~~~~g~~~~A~~~~~~al~~ 100 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM-----PEVFNYLGIY------LTQAGNFDAAYEAFDSVLEL 100 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCC-----HHHHhhhchH------HHHHHHHHHhhhhhhHHHHH
Confidence 467889999999999999999999999999999999999 9999999999 99999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 143 NPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
+|+++.+++++|.++..+|++++|+..|+++++++|.+......++.+.
T Consensus 101 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 149 (259)
T d1xnfa_ 101 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAE 149 (259)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998877777554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=3.3e-19 Score=131.67 Aligned_cols=104 Identities=31% Similarity=0.511 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL 147 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 147 (229)
+..+...|+.++..|+|++|+..|++++.++|.+ +.+|.++|.| |..+|++++|+.+|++|++++|+++
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~-----~~~~~~lg~~------y~~~~~~~~Ai~~~~~al~l~p~~~ 72 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV-----AVYYTNRALC------YLKMQQPEQALADCRRALELDGQSV 72 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHhHHHH------HhhhhhhhhhhHHHHHHHHhCCCcH
Confidence 4457789999999999999999999999999999 9999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
.+|+++|.++..+|++++|+..|+++++++|++..
T Consensus 73 ~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 99999999999999999999999999999886554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.79 E-value=1.4e-18 Score=125.30 Aligned_cols=128 Identities=21% Similarity=0.342 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc----------hhhHHHHHhHhhhhhhhHHhhccCChHHH
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS----------VSRAVFYANRSAALEKLASYLSLEKPDQS 132 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A 132 (229)
.....+..+...|..++..|+|.+|+..|.+++...|.... .....++.++|.| |+.+|++++|
T Consensus 10 E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~------~~~l~~~~~A 83 (168)
T d1kt1a1 10 EKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC------YLKLREYTKA 83 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHH------HHHhhhcccc
Confidence 34466778899999999999999999999999987655432 2245678899999 9999999999
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 133 ILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 133 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
+.++++++.++|++..+++++|.++..+|++++|+.+|+++++++|+++.+...++.+. ..+++
T Consensus 84 i~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~-~~~~~ 147 (168)
T d1kt1a1 84 VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ-KKAKE 147 (168)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH-HHHHH
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHh
Confidence 99999999999999999999999999999999999999999999999999999999887 44444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.2e-18 Score=127.00 Aligned_cols=129 Identities=19% Similarity=0.192 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
.++..|..+...|+|++|++.|.+ +.|.+ +.+|+++|.+ +..+|++++|+.+|+++++++|+++.+
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~-----~~~~~nlG~~------~~~~g~~~~A~~~~~kAl~ldp~~~~a 72 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSA---VQDPH-----SRICFNIGCM------YTILKNMTEAEKAFTRSINRDKHLAVA 72 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT---SSSCC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHh---cCCCC-----HHHHHHHHHH------HHHcCCchhHHHHHHHHHHHhhhhhhh
Confidence 456789999999999999999976 35556 8899999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCc----------------HHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNN----------------RDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----------------~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
|+++|.++..+|++++|+..|++++...|.+ ..+++++|.++ .+++++.+|.+.+.+++ ++|
T Consensus 73 ~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~-~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 73 YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMY-AKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999876653 35678889888 88999999999998888 766
Q ss_pred C
Q psy13014 213 G 213 (229)
Q Consensus 213 ~ 213 (229)
.
T Consensus 152 ~ 152 (192)
T d1hh8a_ 152 E 152 (192)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.76 E-value=4.3e-18 Score=122.86 Aligned_cols=128 Identities=26% Similarity=0.378 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-----------chhhHHHHHhHhhhhhhhHHhhccCChHHHHHH
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSC-----------SVSRAVFYANRSAALEKLASYLSLEKPDQSILA 135 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----------~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~ 135 (229)
.+..+...|..++..|+|.+|+..|.+++...+... ......++.++|.| +.++|++++|+..
T Consensus 26 ~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~------~~~~~~~~~Ai~~ 99 (169)
T d1ihga1 26 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC------KLKMSDWQGAVDS 99 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHH------HHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHH------HHhhcccchhhhh
Confidence 344567889999999999999999999987533211 12247789999999 9999999999999
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhc
Q psy13014 136 CSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGA 201 (229)
Q Consensus 136 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a 201 (229)
|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+...++.+. .+++...++
T Consensus 100 ~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~-~~l~~~~~~ 164 (169)
T d1ihga1 100 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK-QKIKAQKDK 164 (169)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHHHHHHH
T ss_pred hhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887 555554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=7.1e-18 Score=115.02 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=98.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccC---ChHHHHHHHHHHHhcCCCc--H
Q psy13014 73 DEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLE---KPDQSILACSKAITLNPSY--L 147 (229)
Q Consensus 73 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~--~ 147 (229)
.+++.+...+++++|.+.|++++.++|.+ +.+++++|.+ +...+ ++++|+..+++++..+|++ .
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~-----~~~~~n~a~~------L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~ 72 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVS-----KSTQFEYAWC------LVRTRYNDDIRKGIVLLEELLPKGSKEEQR 72 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHH------HTTSSSHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCC-----HHHHHHHHHH------HHHhcchHHHHHHHHHHHHHHhccCCchHH
Confidence 56778889999999999999999999999 9999999999 87644 5568999999999998866 4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCc
Q psy13014 148 KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSP 191 (229)
Q Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 191 (229)
.+++++|.+|..+|++++|+.+|+++++++|++..+...++.+.
T Consensus 73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 58999999999999999999999999999999999998888776
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.73 E-value=3.7e-17 Score=109.85 Aligned_cols=94 Identities=19% Similarity=0.226 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHH
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKV 149 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 149 (229)
..+.+|.++.+.|++.+|+..|++++..+|++ +.+|..+|.+ +...|++++|+.+++++++++|+++.+
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~lg~~------~~~~~~~~~A~~~~~~al~~~p~~~~a 86 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPER-----EEAWRSLGLT------QAENEKDGLAIIALNHARMLDPKDIAV 86 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccccccc-----chhhhhhhhh------hhhhhhHHHhhcccccccccccccccc
Confidence 45789999999999999999999999999999 9999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
++.+|.++...|++++|++.+++.+
T Consensus 87 ~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 87 HAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 9999999999999999999999875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=7.9e-17 Score=109.04 Aligned_cols=113 Identities=6% Similarity=0.052 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q psy13014 18 YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRS 97 (229)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 97 (229)
.-+...|..++.. |++++|+..|.+++ ...|.++.++..+|.++..+|++++|+..|.+++.+
T Consensus 4 ~~l~~~g~~~~~~-g~~~eAi~~~~~al----------------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 66 (117)
T d1elwa_ 4 NELKEKGNKALSV-GNIDDALQCYSEAI----------------KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 66 (117)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------hcCCcchhhhhcccccccccccccccchhhhhHHHh
Confidence 3456789999999 99999999999998 678999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q psy13014 98 CPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQ 158 (229)
Q Consensus 98 ~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 158 (229)
+|++ +.+|+++|.+ +..+|++++|+..|+++++++|+++.++..++.+..
T Consensus 67 ~p~~-----~~~~~~~g~~------~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 67 KPDW-----GKGYSRKAAA------LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp CTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ccch-----hhHHHHHHHH------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 9999 9999999999 999999999999999999999999999999887753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=6.5e-17 Score=111.22 Aligned_cols=110 Identities=23% Similarity=0.371 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.+..+..+|+.++..|+|++|+.+|++++.++|.+ +.++.++|.+ |..+|+|++|+.+++++++++|++
T Consensus 3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~-----~~~~~~~a~~------~~~~~~~~~A~~~~~~al~l~~~~ 71 (128)
T d1elra_ 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN-----MTYITNQAAV------YFEKGDYNKCRELCEKAIEVGREN 71 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-----HHHHHhHHHH------HHHcCchHHHHHHHHHHHHhCccc
Confidence 35567789999999999999999999999999999 9999999999 999999999999999999998877
Q ss_pred H-------HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhc
Q psy13014 147 L-------KVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATK 188 (229)
Q Consensus 147 ~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 188 (229)
. .++..+|.++..++++++|+.+|++++..+|+ +.....+.
T Consensus 72 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~ 119 (128)
T d1elra_ 72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQ 119 (128)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHH
Confidence 4 46778888889999999999999999999886 44444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=1.5e-17 Score=132.23 Aligned_cols=183 Identities=16% Similarity=0.085 Sum_probs=122.3
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHhhhh----------hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFILFSE----------IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDE 74 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (229)
.|+++++.+|++..++..++.++..+ +. +.++...+++++ ...|+++.+|..+
T Consensus 51 ~~~~~l~~~P~~~~a~~~r~~~l~~l-~~~~~~~~~~~~~~~al~~~~~~l----------------~~~pk~~~~~~~~ 113 (334)
T d1dcea1 51 LTSQILGANPDFATLWNCRREVLQHL-ETEKSPEESAALVKAELGFLESCL----------------RVNPKSYGTWHHR 113 (334)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHH----------------HHCTTCHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHH-hhhcchHHHHHHHHHHHHHHHHHH----------------HhCCCcHHHHHHh
Confidence 36789999999999998888776655 43 566666666655 3455555556666
Q ss_pred HHHHHHccC--HHHHHHHHHHHHHhCCCCCchhhHHHH-HhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHH
Q psy13014 75 GNALFRLNQ--WSESLAKYNEALRSCPRSCSVSRAVFY-ANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQ 151 (229)
Q Consensus 75 g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~-~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (229)
|.++...++ +++|+..+++++..+|.+ ..++ ..+|.+ +...+.+++|+..++++++++|.+..+|+
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~-----~~~~~~~~~~~------~~~~~~~~~Al~~~~~~i~~~p~~~~a~~ 182 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEADERN-----FHCWDYRRFVA------AQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHH------HHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhCchh-----hhhhhhHHHHH------HHhccccHHHHHHHHHHHHcCCCCHHHHH
Confidence 555555443 556666666666666655 4443 344555 55556666666666666666666666665
Q ss_pred HHHHHHHh----------------------------------------------------------------cccHHHHH
Q psy13014 152 RRARLYQQ----------------------------------------------------------------SDKLDEAL 167 (229)
Q Consensus 152 ~la~~~~~----------------------------------------------------------------~~~~~~A~ 167 (229)
++|.++.. .|++++|+
T Consensus 183 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHH
Confidence 55555443 36667777
Q ss_pred HHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcc
Q psy13014 168 ADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQ 216 (229)
Q Consensus 168 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~ 216 (229)
..+.+++..+|.+..++..+|.++ ..+++..+|++.+.+++ ++|.+..
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~eA~~~~~~ai~ldP~~~~ 311 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRAL-DPLLYEKETLQYFSTLKAVDPMRAA 311 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHH-CTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCcccHH
Confidence 777777788888888888888887 67788888888888888 8885543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=3.6e-16 Score=111.39 Aligned_cols=125 Identities=12% Similarity=0.122 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...+...|..++.. |++++|+..|++++ ...|.++.+|..+|.++..+|++++|+..|+++++
T Consensus 10 a~~l~~~gn~~~~~-~~y~~A~~~~~~al----------------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~ 72 (159)
T d1a17a_ 10 AEELKTQANDYFKA-KDYENAIKFYSQAI----------------ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE 72 (159)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHhhhcc----------------ccchhhhhhhhhhHHHHHhccccchHHHHHHHHHH
Confidence 35577789999999 99999999999998 67789999999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh--cccHHHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ--SDKLDEALAD 169 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~~~~~~A~~~ 169 (229)
++|.+ ..+|.++|.+ +..+|++++|+.++++++.++|+++.++..++.+... .+.+++|+..
T Consensus 73 ~~p~~-----~~a~~~~g~~------~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 73 LDKKY-----IKGYYRRAAS------NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hcccc-----hHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 9999999999 9999999999999999999999999998888777543 3445566544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.70 E-value=9e-16 Score=110.42 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP 99 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 99 (229)
+...|..++.. |++.+|+..|.+++...................|..+.++.++|.++.++|++++|+..|+++++++|
T Consensus 30 ~~~~~~~~~~~-~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 30 LKNIGNTFFKS-QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh
Confidence 44557778888 99999999998887655443333323333455788899999999999999999999999999999999
Q ss_pred CCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHH
Q psy13014 100 RSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEAL 167 (229)
Q Consensus 100 ~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 167 (229)
++ +.+|+++|.+ +..+|++++|+..|+++++++|++..+...++.+...+....++.
T Consensus 109 ~~-----~~a~~~~g~~------~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 109 SN-----TKALYRRAQG------WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp TC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh-----hhHHHhHHHH------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999 999999999999999999999999999999999988877776653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.69 E-value=6.1e-17 Score=113.77 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=100.5
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHh----hccCChHHHHHHHHHHHhcCCCcHHHHH
Q psy13014 76 NALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASY----LSLEKPDQSILACSKAITLNPSYLKVYQ 151 (229)
Q Consensus 76 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (229)
..+.+++.|++|+..|+++++++|++ +.++.++|.++..++.+ ...+.+++|+..|+++++++|+++.+|+
T Consensus 5 ~~~~r~~~fe~A~~~~e~al~~~P~~-----~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~ 79 (145)
T d1zu2a1 5 TEFDRILLFEQIRQDAENTYKSNPLD-----ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 79 (145)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCcc-----hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHh
Confidence 34567788999999999999999999 99999999994444432 2346678999999999999999999999
Q ss_pred HHHHHHHhccc-----------HHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhh
Q psy13014 152 RRARLYQQSDK-----------LDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNG 200 (229)
Q Consensus 152 ~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 200 (229)
++|.+|..+|+ +++|+++|+++++++|++..++..++.+. ...+...+
T Consensus 80 ~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-ka~~~~~e 138 (145)
T d1zu2a1 80 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-KAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-THHHHHHH
T ss_pred hHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-HHHHHHHH
Confidence 99999988764 79999999999999999999999999776 44444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=4.7e-17 Score=129.37 Aligned_cols=164 Identities=16% Similarity=0.032 Sum_probs=141.2
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHcc
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSE--IRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISL-KDEGNALFRLN 82 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~ 82 (229)
|+++++.+|+++.+++.+|.++... ++ +.++...+++++ ...|....++ ...|.++...+
T Consensus 96 ~~~~l~~~pk~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~al----------------~~~~~~~~~~~~~~~~~~~~~~ 158 (334)
T d1dcea1 96 LESCLRVNPKSYGTWHHRCWLLSRL-PEPNWARELELCARFL----------------EADERNFHCWDYRRFVAAQAAV 158 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTC-SSCCHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCcHHHHHHhhHHHHHh-ccccHHHHHHHHHHHH----------------hhCchhhhhhhhHHHHHHHhcc
Confidence 6778999999999999999998887 65 788888888887 4555555554 57788888999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHH----------------------------------------
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLAS---------------------------------------- 122 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~---------------------------------------- 122 (229)
.+++|+..+++++..+|.+ ..+|.++|.++.++|.
T Consensus 159 ~~~~Al~~~~~~i~~~p~~-----~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~ 233 (334)
T d1dcea1 159 APAEELAFTDSLITRNFSN-----YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHR 233 (334)
T ss_dssp CHHHHHHHHHTTTTTTCCC-----HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 9999999999999999999 9999999998555442
Q ss_pred ------------------hhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH
Q psy13014 123 ------------------YLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAY 184 (229)
Q Consensus 123 ------------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 184 (229)
+...+++++|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++++|.....|
T Consensus 234 ~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 234 WLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp HHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 23346788889999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCc
Q psy13014 185 VATKVSP 191 (229)
Q Consensus 185 ~~l~~~~ 191 (229)
..++..+
T Consensus 314 ~~L~~~~ 320 (334)
T d1dcea1 314 DDLRSKF 320 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887665
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2e-14 Score=103.37 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...+...|..++.. |++++|+..|++++...+...... ........+-...++.++|.++.+.|+|++|+..+++++.
T Consensus 13 a~~l~~~G~~~~~~-~~~~~Ai~~y~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~ 90 (170)
T d1p5qa1 13 STIVKERGTVYFKE-GKYKQALLQYKKIVSWLEYESSFS-NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 90 (170)
T ss_dssp HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTTCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhhccccc-hHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence 34556678999999 999999999998875422100000 0000112234456788899999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEAL 167 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~ 167 (229)
++|++ +.+++++|.+ ++.+|++++|+.+|+++++++|+++.+...++.+....+...+..
T Consensus 91 ~~p~~-----~~a~~~~g~~------~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 91 LDSNN-----EKGLSRRGEA------HLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-----hhhhHHHHHH------HHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999 999999999999999999999999999999999988877766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.63 E-value=3.7e-16 Score=104.82 Aligned_cols=95 Identities=16% Similarity=0.092 Sum_probs=89.9
Q ss_pred HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHh
Q psy13014 108 VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVAT 187 (229)
Q Consensus 108 ~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 187 (229)
..++.+|.+ ++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|+++++++|++..++..+
T Consensus 17 ~~~~~~g~~------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 90 (112)
T d1hxia_ 17 ENPMEEGLS------MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 90 (112)
T ss_dssp SCHHHHHHH------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHH------HHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHH
Confidence 346789999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHhhhhhccccccccc
Q psy13014 188 KVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 188 ~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
|.++ ...++..+|++.+++.+
T Consensus 91 a~~y-~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 91 AVSH-TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHCCCHHHHHHHHHHHh
Confidence 9999 89999999998887654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.62 E-value=6e-14 Score=100.60 Aligned_cols=146 Identities=10% Similarity=0.078 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...+.-.|..++.. |++.+|+..|.+++...+...... ........+....++.++|.++..+|++++|+..+++++.
T Consensus 15 a~~~~e~G~~~~~~-~~~~~A~~~Y~~al~~~~~~~~~~-~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~ 92 (168)
T d1kt1a1 15 AAIVKEKGTVYFKG-GKYVQAVIQYGKIVSWLEMEYGLS-EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 92 (168)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTTCCSCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhhccc-hhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhh
Confidence 45667789999999 999999999998875432100000 0001123344566788999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH-HHHHHHHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE-ALADYQKILE 175 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~ 175 (229)
++|.+ ..+++++|.+ +..+|++++|+.+|.+++.++|++..++..++.+....+.+.+ ....|.+.++
T Consensus 93 l~p~~-----~~a~~~~~~~------~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 93 LDSAN-----EKGLYRRGEA------QLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccch-----HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 99999 9999999999 9999999999999999999999999999999999888877654 4444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=4.2e-16 Score=114.62 Aligned_cols=122 Identities=14% Similarity=0.063 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...+...|..++.. |++++|+..|++++ ...|.++.+|..+|.++...|++++|+..|+++++
T Consensus 4 a~~l~~~Gn~~~~~-g~~~~Ai~~~~kal----------------~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~ 66 (201)
T d2c2la1 4 AQELKEQGNRLFVG-RKYPEAAACYGRAI----------------TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66 (201)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHH----------------HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH
Confidence 45567889999999 99999999999998 67789999999999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
++|++ +.+|.++|.+ +..+|++++|+..|+++++++|++...+...+..+...+....+
T Consensus 67 l~p~~-----~~a~~~lg~~------~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~ 125 (201)
T d2c2la1 67 LDGQS-----VKAHFFLGQC------QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 125 (201)
T ss_dssp SCTTC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred hCCCc-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHH
Confidence 99999 9999999999 99999999999999999999886655444444444444443333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.61 E-value=2.7e-15 Score=106.15 Aligned_cols=135 Identities=10% Similarity=0.039 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 17 LYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
...+...|..++.. |++.+|+..|.+++...................+-...++.++|.+++++|++++|+..+++++.
T Consensus 17 a~~~~~~G~~~f~~-~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 17 AFDIKEEGNEFFKK-NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 34566789999999 99999999998887432110000000000112233456788999999999999999999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKL 163 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 163 (229)
++|.+ ..+|+++|.+ +..+|++++|+.+|+++++++|++..+...++.+..++++.
T Consensus 96 ~~p~~-----~ka~~~~g~~------~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~ 151 (153)
T d2fbna1 96 IDKNN-----VKALYKLGVA------NMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 151 (153)
T ss_dssp HSTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred ccchh-----hhhhHHhHHH------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999 99999999999999999999999999999999887766543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=6.3e-14 Score=109.09 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q psy13014 19 TIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSC 98 (229)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 98 (229)
.+...|.++... +++++|...|++++.... .....+..+..+..+|.++..+|++++|+.+|++++.+.
T Consensus 39 ~y~~aa~~y~~~-~~~~~A~~~y~kA~~~~~----------~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~ 107 (290)
T d1qqea_ 39 LCVQAATIYRLR-KELNLAGDSFLKAADYQK----------KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF 107 (290)
T ss_dssp HHHHHHHHHHHT-TCTHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHh
Confidence 466667788777 999999999998874322 112345677899999999999999999999999999987
Q ss_pred CCCCch-hhHHHHHhHhhhhhhhHHhh-ccCChHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 99 PRSCSV-SRAVFYANRSAALEKLASYL-SLEKPDQSILACSKAITLNPS------YLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 99 p~~~~~-~~~~~~~~lg~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+..... ....++..+|.+ +. ..|++++|+.+|.+++++.+. ...++.++|.++..+|+|++|+..|
T Consensus 108 ~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~ 181 (290)
T d1qqea_ 108 THRGQFRRGANFKFELGEI------LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY 181 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHH------HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcccchhHHHHHHHHHHh------HhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence 655332 245677888887 75 469999999999999987432 2456899999999999999999999
Q ss_pred HHHHHhCCCcHH-------HHHHhccCchHHHhhhhhccccccccc-ccCC
Q psy13014 171 QKILELDPNNRD-------AYVATKVSPDLKLKEKNGATKLSPDVF-LHPG 213 (229)
Q Consensus 171 ~~al~~~p~~~~-------~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~ 213 (229)
++++...|.++. .+...+.++ ...++...|.+.+.++. ++|.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQ-LAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHHHHTTSSCTTTGGGHHHHHHHHHHHH-HHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHhCccchhhhhhHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhCCC
Confidence 999999887653 344555555 56677888888888887 7764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.9e-14 Score=97.64 Aligned_cols=112 Identities=7% Similarity=0.041 Sum_probs=96.2
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCC
Q psy13014 24 CFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL---NQWSESLAKYNEALRSCPR 100 (229)
Q Consensus 24 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~ 100 (229)
+-.+... +++++|.+.|++++ ...|.++.+++++|.++... +++.+|+..|++++..+|.
T Consensus 6 ~n~~~~~-~~l~~Ae~~Y~~aL----------------~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~ 68 (122)
T d1nzna_ 6 LNELVSV-EDLLKFEKKFQSEK----------------AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK 68 (122)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHH----------------HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH
T ss_pred HHHhcCH-HHHHHHHHHHHHHH----------------hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC
Confidence 3456677 89999999999988 67889999999999999874 4556799999999998875
Q ss_pred CCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 101 SCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 101 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
+ ....+++++|.+ |..+|++++|+.+|+++++++|++..+...++.+...++
T Consensus 69 ~---~~~~~~~~Lg~~------y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~ 120 (122)
T d1nzna_ 69 E---EQRDYVFYLAVG------NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120 (122)
T ss_dssp H---HHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred c---hHHHHHHHHHHH------HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHc
Confidence 4 125689999999 999999999999999999999999999999888776554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=3.7e-14 Score=99.25 Aligned_cols=118 Identities=16% Similarity=0.070 Sum_probs=98.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHH
Q psy13014 27 LFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRL----------NQWSESLAKYNEALR 96 (229)
Q Consensus 27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------~~~~~A~~~~~~al~ 96 (229)
+-.+ +.+++|...|++++ ...|+++.+++.+|.++... +.+++|+..|+++++
T Consensus 7 ~~r~-~~fe~A~~~~e~al----------------~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~ 69 (145)
T d1zu2a1 7 FDRI-LLFEQIRQDAENTY----------------KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL 69 (145)
T ss_dssp HHHH-HHHHHHHHHHHHHH----------------HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-ccHHHHHHHHHHHH----------------hhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3445 88899999999888 78899999999999999854 556899999999999
Q ss_pred hCCCCCchhhHHHHHhHhhhhhhhHHh-----hccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHH
Q psy13014 97 SCPRSCSVSRAVFYANRSAALEKLASY-----LSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEA 166 (229)
Q Consensus 97 ~~p~~~~~~~~~~~~~lg~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A 166 (229)
++|++ +.+|+++|.++.++|.+ ...+.+++|+++|+++++++|++..++..++.+....+.+.++
T Consensus 70 l~P~~-----~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~ 139 (145)
T d1zu2a1 70 IDPKK-----DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA 139 (145)
T ss_dssp HCTTC-----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred hcchh-----hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999995444432 2234589999999999999999999999999887666665554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.52 E-value=4.4e-14 Score=109.96 Aligned_cols=191 Identities=10% Similarity=-0.022 Sum_probs=139.5
Q ss_pred cchhhccc------CCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q psy13014 5 PYQQELSK------NPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNAL 78 (229)
Q Consensus 5 ~~~~~l~~------~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 78 (229)
.|.+++++ .++...++...|.++... |++++|...+++++..... .........++..+|.++
T Consensus 59 ~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~-~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~~~~~l~~~~ 127 (290)
T d1qqea_ 59 SFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTH----------RGQFRRGANFKFELGEIL 127 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHhhHHhhh----------cccchhHHHHHHHHHHhH
Confidence 35566654 233456788889999999 9999999999888754321 123445677889999988
Q ss_pred HH-ccCHHHHHHHHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcH-------HH
Q psy13014 79 FR-LNQWSESLAKYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYL-------KV 149 (229)
Q Consensus 79 ~~-~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~ 149 (229)
.. .|++++|+.+|++++.+.+.... .....++.++|.+ +..+|+|++|+..|++++...|.+. ..
T Consensus 128 ~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~------~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 128 ENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL------KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHH------HHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 66 69999999999999988654322 2246678999999 9999999999999999999987663 45
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHH-----HHhccCch-HHHhhhhhccccccccc-ccC
Q psy13014 150 YQRRARLYQQSDKLDEALADYQKILELDPNNRDAY-----VATKVSPD-LKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 150 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~l~~~~~-~~~~~~~~a~~~~~~~~-~~p 212 (229)
+...|.++...|+++.|...++++++++|...... ..+..++. ...+.+.+|++.|..+. +||
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 67889999999999999999999999999766532 22222221 12344778888888777 765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.52 E-value=1.3e-14 Score=102.93 Aligned_cols=107 Identities=15% Similarity=0.175 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhc
Q psy13014 70 SLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITL 142 (229)
Q Consensus 70 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~ 142 (229)
.....|..++..|+|++|+..|++++.+.|.... ...+.+|.++|.+ |..+|++++|+..+++++.+
T Consensus 11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~------~~~lg~~~~A~~~~~~al~~ 84 (156)
T d2hr2a1 11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA------LAGLRSFDEALHSADKALHY 84 (156)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHH------HHHcCccchhhHhhhhhhhc
Confidence 3445588999999999999999999999886532 1236789999999 99999999999999999986
Q ss_pred CCC-----------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 143 NPS-----------YLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 143 ~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
.|. ...+++++|.++..+|++++|+..|++++++.|+...
T Consensus 85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~ 135 (156)
T d2hr2a1 85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 135 (156)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence 432 2457899999999999999999999999999775543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.6e-16 Score=131.86 Aligned_cols=120 Identities=12% Similarity=-0.052 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcC
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLN 143 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 143 (229)
.+.....+..+|..+...+++.+|+..+.+++..+| ..++.++|.+ +...|++++|+.+|.+|+.++
T Consensus 116 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~LG~l------~~~~~~~~~A~~~y~~A~~l~ 182 (497)
T d1ya0a1 116 DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-------QHCLVHLGDI------ARYRNQTSQAESYYRHAAQLV 182 (497)
T ss_dssp ---------------------------CCHHHHHHH-------HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC
T ss_pred ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-------HHHHHHHHHH------HHHcccHHHHHHHHHHHHHHC
Confidence 344555566666666666666666666666666543 4567888988 999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhh
Q psy13014 144 PSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKE 197 (229)
Q Consensus 144 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 197 (229)
|+++.+|+++|.++...|++.+|+.+|.+++.++|.++.++.+++.++ .+..+
T Consensus 183 P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~-~~~~~ 235 (497)
T d1ya0a1 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL-SKALE 235 (497)
T ss_dssp TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH-HHHTT
T ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH-HHhhh
Confidence 999999999999999999999999999999999999999999999887 44433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.5e-14 Score=119.66 Aligned_cols=180 Identities=8% Similarity=-0.010 Sum_probs=100.6
Q ss_pred chhhcccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHH
Q psy13014 6 YQQELSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWS 85 (229)
Q Consensus 6 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 85 (229)
|++++..+|+...++-..+.+. . ..+..++..+++..... .............+......+.|+
T Consensus 40 ye~~i~~dp~~a~~~~~e~~Lw--~-~~y~~~ie~~r~~~k~~-------------~~~~~~~~~~~~~~~l~~a~~~Y~ 103 (497)
T d1ya0a1 40 YQKMLVTDLEYALDKKVEQDLW--N-HAFKNQITTLQGQAKNR-------------ANPNRSEVQANLSLFLEAASGFYT 103 (497)
T ss_dssp HHHHHHHCHHHHHHHTHHHHHH--H-HHTHHHHHHHHHHHSCS-------------SCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcChhhHHHHhHHHHHH--H-HHHHHHHHHHHHhcccc-------------cCccHHHHHHHHHHHHHHHHHHHH
Confidence 7888999998877654333221 2 23445555555443100 000001111122344555677788
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHH
Q psy13014 86 ESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDE 165 (229)
Q Consensus 86 ~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 165 (229)
.|+..+.+++.++|.+ ...+.++|.+ +...|+++.|+..+.+++..+| ..++.++|.++...|++++
T Consensus 104 ~ai~~l~~~~~l~~~~-----~~~~~~lg~~------~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~ 170 (497)
T d1ya0a1 104 QLLQELCTVFNVDLPC-----RVKSSQLGII------SNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQ 170 (497)
T ss_dssp HHHHHHTC------------------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHCCChhh-----HHHHHHhHHH------HHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHH
Confidence 8888888888888887 7888888888 8888888888888888887665 4677888888888888888
Q ss_pred HHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCc
Q psy13014 166 ALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQP 215 (229)
Q Consensus 166 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~ 215 (229)
|+.+|++|++++|++..++.++|.++ ...++..+|+..|.+++ ++|...
T Consensus 171 A~~~y~~A~~l~P~~~~~~~~Lg~~~-~~~~~~~~A~~~y~ral~~~~~~~ 220 (497)
T d1ya0a1 171 AESYYRHAAQLVPSNGQPYNQLAILA-SSKGDHLTTIFYYCRSIAVKFPFP 220 (497)
T ss_dssp HHHHHHHHHHHCTTBSHHHHHHHHHH-HHTTCHHHHHHHHHHHHSSSBCCH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHH-HHcCCHHHHHHHHHHHHhCCCCCH
Confidence 88888888888888888888888888 77788888888888888 776443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.4e-14 Score=99.24 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=84.9
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYVA 186 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 186 (229)
+..+..+|.+ ++..|+|++|+.+|+++++++|+++.++.++|.++..+|++++|+..++++++++|.+...+..
T Consensus 4 a~~~k~~G~~------~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~ 77 (128)
T d1elra_ 4 ALKEKELGND------AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (128)
T ss_dssp HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence 5567789999 9999999999999999999999999999999999999999999999999999999998876666
Q ss_pred hccCch------HHHhhhhhccccccccc-ccC
Q psy13014 187 TKVSPD------LKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 187 l~~~~~------~~~~~~~~a~~~~~~~~-~~p 212 (229)
++.++. ..++++.+|+..|.+++ .+|
T Consensus 78 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 78 IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 665541 45556677777776666 443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.4e-13 Score=89.15 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc--hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 68 AISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS--VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 68 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+.-++.+|.++++.|+|.+|+..|++|+++.|.+.. ...+.++.++|.+ +.++|++++|+.+|+++++++|+
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~------~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYA------VYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhH------HHhcCChHHHHHHHHHHHHhCcC
Confidence 345789999999999999999999999998765422 2357899999999 99999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcc
Q psy13014 146 YLKVYQRRARLYQQSD 161 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~ 161 (229)
++.++.+++.+...++
T Consensus 79 ~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 79 HQRANGNLKYFEYIMA 94 (95)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999987765543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.3e-13 Score=89.35 Aligned_cols=79 Identities=22% Similarity=0.081 Sum_probs=72.5
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY-------LKVYQRRARLYQQSDKLDEALADYQKILELDPN 179 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 179 (229)
++-++.+|.+ ++..|+|++|+.+|++|+++.|.+ ..++.++|.++..+|++++|+..|+++++++|+
T Consensus 5 addc~~lG~~------~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 5 AEDSFELGKV------AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 6678899999 999999999999999999885543 678999999999999999999999999999999
Q ss_pred cHHHHHHhccCc
Q psy13014 180 NRDAYVATKVSP 191 (229)
Q Consensus 180 ~~~~~~~l~~~~ 191 (229)
++.++.+++.+.
T Consensus 79 ~~~a~~Nl~~~~ 90 (95)
T d1tjca_ 79 HQRANGNLKYFE 90 (95)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=3.3e-13 Score=105.77 Aligned_cols=179 Identities=15% Similarity=-0.005 Sum_probs=105.2
Q ss_pred cchhhcccCCchHHHHHHHHHHHHHh-------------hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q psy13014 5 PYQQELSKNPSFLYTIYFSCFILFIL-------------FSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISL 71 (229)
Q Consensus 5 ~~~~~l~~~p~~~~~~~~~~~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (229)
-|++|+...|.++..|+..+..+... .+..+++...|++++.. ..|.....|
T Consensus 38 vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~---------------~~p~~~~l~ 102 (308)
T d2onda1 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---------------LLKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT---------------TTTTCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHH---------------cCCCCHHHH
Confidence 47889999999999888877655432 02335555666665521 134444556
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHH
Q psy13014 72 KDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQ 151 (229)
Q Consensus 72 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 151 (229)
...+......|+++.|...|++++...|.+. ..+|...+.. ....|+++.|...|.++++..|.+...+.
T Consensus 103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~----~~~w~~~~~~------~~~~~~~~~ar~i~~~al~~~~~~~~~~~ 172 (308)
T d2onda1 103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDP----TLVYIQYMKF------ARRAEGIKSGRMIFKKAREDARTRHHVYV 172 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT----HHHHHHHHHH------HHHHHCHHHHHHHHHHHHTSTTCCTHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhcCCh----HHHHHHHHHH------HHHcCChHHHHHHHHHHHHhCCCcHHHHH
Confidence 6666666666666666666666666666541 3345555555 55555556666666666666665555555
Q ss_pred HHHHHHH-hcccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhccccccccc
Q psy13014 152 RRARLYQ-QSDKLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF 209 (229)
Q Consensus 152 ~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 209 (229)
..|.... ..|+.+.|...|++++...|+++..+..++... ...++...|...|.+++
T Consensus 173 ~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~-~~~g~~~~aR~~fe~ai 230 (308)
T d2onda1 173 TAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL-SHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-HTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHcCChHHHHHHHHHHH
Confidence 5555432 235555566666666666666665555555554 44555555555555554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.44 E-value=6.3e-13 Score=104.16 Aligned_cols=181 Identities=5% Similarity=-0.031 Sum_probs=147.1
Q ss_pred cchhhcc-cCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHcc
Q psy13014 5 PYQQELS-KNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQT-AISLKDEGNALFRLN 82 (229)
Q Consensus 5 ~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 82 (229)
.|+++++ ..|.+...++..+.++... |+++.+...|++++ ...|.+ ..+|...+......+
T Consensus 86 i~~ral~~~~p~~~~l~~~ya~~~~~~-~~~~~a~~i~~~~l----------------~~~~~~~~~~w~~~~~~~~~~~ 148 (308)
T d2onda1 86 IYERAISTLLKKNMLLYFAYADYEESR-MKYEKVHSIYNRLL----------------AIEDIDPTLVYIQYMKFARRAE 148 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH----------------TSSSSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHH----------------HHhcCChHHHHHHHHHHHHHcC
Confidence 3677886 4888888899999988888 99999999998887 333433 446888899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhh-ccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q psy13014 83 QWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYL-SLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSD 161 (229)
Q Consensus 83 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~ 161 (229)
+++.|...|.+++...|.+ ...+...|.. .. ..|+.+.|...|++++...|+++..|..++..+...|
T Consensus 149 ~~~~ar~i~~~al~~~~~~-----~~~~~~~a~~------e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g 217 (308)
T d2onda1 149 GIKSGRMIFKKAREDARTR-----HHVYVTAALM------EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp CHHHHHHHHHHHHTSTTCC-----THHHHHHHHH------HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhCCCc-----HHHHHHHHHH------HHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcC
Confidence 9999999999999999998 7888888776 44 4689999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCCcHH----HHHHhccCchHHHhhhhhccccccccc-ccCCC
Q psy13014 162 KLDEALADYQKILELDPNNRD----AYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQ 214 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~ 214 (229)
++++|...|++++...|.++. .|....... ...|+...+.+.+.++. +-|..
T Consensus 218 ~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE-~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE-SNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCccc
Confidence 999999999999998876543 555555544 55566666665555555 44533
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.1e-11 Score=96.89 Aligned_cols=199 Identities=9% Similarity=-0.032 Sum_probs=146.7
Q ss_pred chhhcccCCchH-----HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH------HHHH-----------------h
Q psy13014 6 YQQELSKNPSFL-----YTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIF------HVLF-----------------Y 57 (229)
Q Consensus 6 ~~~~l~~~p~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~-----------------~ 57 (229)
|+++++..|++. .++..+|.++... |++++|...+++++....... .... .
T Consensus 35 ~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 113 (366)
T d1hz4a_ 35 AKLALEELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET 113 (366)
T ss_dssp HHHHHHTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhCcCCCcHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888874 4678889999999 999999999988765322110 0000 0
Q ss_pred h-h--------hhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhH---------------------
Q psy13014 58 L-F--------CSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRA--------------------- 107 (229)
Q Consensus 58 ~-~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------------------- 107 (229)
. . .....+..+..+..+|.++...|+++.+...+.+++...+........
T Consensus 114 ~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 193 (366)
T d1hz4a_ 114 QEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 193 (366)
T ss_dssp HHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 0 0 011122345677788999999999999999999999887655332112
Q ss_pred --------------------HHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHhcccH
Q psy13014 108 --------------------VFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY----LKVYQRRARLYQQSDKL 163 (229)
Q Consensus 108 --------------------~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~ 163 (229)
.++..+|.+ +...|++++|...+.+++...|.+ ...+.++|.++...|++
T Consensus 194 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 267 (366)
T d1hz4a_ 194 QLNRLENLLGNGKYHSDWISNANKVRVIY------WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEF 267 (366)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhcccCchHHHHHHHHHHH------HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCH
Confidence 223334444 778899999999999999887654 45678899999999999
Q ss_pred HHHHHHHHHHHHh------CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccC
Q psy13014 164 DEALADYQKILEL------DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHP 212 (229)
Q Consensus 164 ~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p 212 (229)
++|+..+++++.. .|....++..+|.++ ...++..+|++.+.+++ +.+
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 268 EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY-WQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHhh
Confidence 9999999999844 455667889999998 88999999999998887 543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.23 E-value=2.1e-10 Score=82.53 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc-----------------hhhHHHHHhHhhhhhhhHHhhc
Q psy13014 63 KLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS-----------------VSRAVFYANRSAALEKLASYLS 125 (229)
Q Consensus 63 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~lg~~~~~~~~~~~ 125 (229)
.+......+...|......|++++|+..|.+++.+.+.... .....++..++.+ +..
T Consensus 6 ~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~------~~~ 79 (179)
T d2ff4a2 6 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEA------EIA 79 (179)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHH------HHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Confidence 34556678889999999999999999999999999775421 2234678888999 999
Q ss_pred cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q psy13014 126 LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKIL 174 (229)
Q Consensus 126 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al 174 (229)
+|++++|+.++++++.++|.+..+|..++.++...|++.+|+..|+++.
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.16 E-value=1.7e-10 Score=81.16 Aligned_cols=116 Identities=13% Similarity=0.032 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q psy13014 20 IYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCP 99 (229)
Q Consensus 20 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 99 (229)
++..|..++.. |++++|+..|++++...+.... .......+..+.++.++|.++..+|++++|+..+++++.+.|
T Consensus 12 ~l~~g~~~~~~-g~y~~Ai~~y~~Al~i~~~~~~----~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 12 ALSDAQRQLVA-GEYDEAAANCRRAMEISHTMPP----EEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHHHHHHTTSCT----TSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhChhhhh----hhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 44457888888 9999999999998843221000 000112345677899999999999999999999999998855
Q ss_pred CCCc------hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc
Q psy13014 100 RSCS------VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY 146 (229)
Q Consensus 100 ~~~~------~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 146 (229)
.... .....+++++|.+ |..+|++++|+.+|++++++.|..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~------~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALA------LDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccchhHHHHhhhHHH------HHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3211 1235578999999 999999999999999999986533
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=1e-09 Score=85.39 Aligned_cols=153 Identities=12% Similarity=-0.029 Sum_probs=122.1
Q ss_pred cccCCchHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHH
Q psy13014 10 LSKNPSFLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLA 89 (229)
Q Consensus 10 l~~~p~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 89 (229)
+..++-+..+....|.++... |++++|...+++++...+ ....+....++..+|.++...|++++|+.
T Consensus 5 ~~~~~~~ae~~~lrA~~~~~~-g~~~~A~~~~~~aL~~~~-----------~~~~~~~~~a~~~lg~~~~~~g~~~~A~~ 72 (366)
T d1hz4a_ 5 IREDTMHAEFNALRAQVAIND-GNPDEAERLAKLALEELP-----------PGWFYSRIVATSVLGEVLHCKGELTRSLA 72 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCC-----------TTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCc-----------CCCcHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 344555678888899999999 999999999998873211 11233456789999999999999999999
Q ss_pred HHHHHHHhCCCCCc-hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHhc
Q psy13014 90 KYNEALRSCPRSCS-VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP--------SYLKVYQRRARLYQQS 160 (229)
Q Consensus 90 ~~~~al~~~p~~~~-~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~ 160 (229)
.|++++.+.+.... ......+..++.+ +...|++..|+..+.+++.+.+ .....+..+|.++...
T Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 146 (366)
T d1hz4a_ 73 LMQQTEQMARQHDVWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 146 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHh
Confidence 99999998665432 2346778889999 9999999999999999987532 2245677899999999
Q ss_pred ccHHHHHHHHHHHHHhCCCc
Q psy13014 161 DKLDEALADYQKILELDPNN 180 (229)
Q Consensus 161 ~~~~~A~~~~~~al~~~p~~ 180 (229)
|+++.+...+.+++...+..
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~ 166 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSY 166 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTS
T ss_pred cchhhhHHHHHHHHHHhhhh
Confidence 99999999999999887653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.06 E-value=2.4e-11 Score=92.89 Aligned_cols=132 Identities=11% Similarity=0.078 Sum_probs=106.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHH
Q psy13014 75 GNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRA 154 (229)
Q Consensus 75 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 154 (229)
+.-.+..|++++|+..++++++.+|.+ +.++..+|.+ +...|++++|+..++++++++|++..++..++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d-----~~ar~~La~l------L~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~ 71 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKD-----ASLRSSFIEL------LCIDGDFERADEQLMQSIKLFPEYLPGASQLR 71 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTC-----HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC-----HHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 345677899999999999999999999 9999999999 99999999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHHh-CCCcHHHHHHhccCchHHHhhhhhccccccccc-ccCCCcccc
Q psy13014 155 RLYQQSDKLDEALADYQKILEL-DPNNRDAYVATKVSPDLKLKEKNGATKLSPDVF-LHPGQPQIQ 218 (229)
Q Consensus 155 ~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~-~~p~~~~~~ 218 (229)
.++...+..+++...+...... +|.....+...+.+. ...++..+|...+.++. ..|......
T Consensus 72 ~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~-~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLS-MVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 9988888877776655543333 455555555566665 67788888888888888 777655443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.99 E-value=1.8e-10 Score=87.96 Aligned_cols=134 Identities=8% Similarity=-0.068 Sum_probs=114.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhh
Q psy13014 27 LFILFSEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSR 106 (229)
Q Consensus 27 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 106 (229)
.+.. |++++|+..+++.+ +..|.++.++..+|.++...|++++|+..|+++++++|++
T Consensus 6 aL~~-G~l~eAl~~l~~al----------------~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~----- 63 (264)
T d1zbpa1 6 ALSE-GQLQQALELLIEAI----------------KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY----- 63 (264)
T ss_dssp HTTT-TCHHHHHHHHHHHH----------------HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG-----
T ss_pred HHHC-CCHHHHHHHHHHHH----------------HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCc-----
Confidence 3455 89999999999988 7889999999999999999999999999999999999998
Q ss_pred HHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHHHHH
Q psy13014 107 AVFYANRSAALEKLASYLSLEKPDQSILACSKAIT-LNPSYLKVYQRRARLYQQSDKLDEALADYQKILELDPNNRDAYV 185 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 185 (229)
...+..++.+ +...+..+++...+.+... .+|.....+...+.++...|++++|.+.+.++.+..|..+..+.
T Consensus 64 ~~~~~~l~~l------l~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 64 LPGASQLRHL------VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHHHHH------HHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 9999999998 7776666666655544333 35666778888899999999999999999999999999887766
Q ss_pred Hhc
Q psy13014 186 ATK 188 (229)
Q Consensus 186 ~l~ 188 (229)
..+
T Consensus 138 ~~~ 140 (264)
T d1zbpa1 138 DTS 140 (264)
T ss_dssp TEE
T ss_pred ccC
Confidence 544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.87 E-value=2.7e-08 Score=75.25 Aligned_cols=182 Identities=13% Similarity=0.012 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHH--hhh---------------hhhhHHHHHHHHHHHHHH
Q psy13014 16 FLYTIYFSCFILFILFSEIRTDCHQFERQVFYIQFIFH-VLF--YLF---------------CSQKLEQTAISLKDEGNA 77 (229)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~--~~~---------------~~~~~~~~~~~~~~~g~~ 77 (229)
||.+++.+|..+... +++.+|..+|+++...-..... .++ +.. ........+.+...+|..
T Consensus 1 ~p~~~~~lG~~~~~~-~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~ 79 (265)
T d1ouva_ 1 DPKELVGLGAKSYKE-KDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 79 (265)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccc
Confidence 578999999999999 9999999999987522100000 000 000 001112233444555555
Q ss_pred HHH----ccCHHHHHHHHHHHHHhCCCCCc-----------------------------hhhHHHHHhHhhhhhhhHHhh
Q psy13014 78 LFR----LNQWSESLAKYNEALRSCPRSCS-----------------------------VSRAVFYANRSAALEKLASYL 124 (229)
Q Consensus 78 ~~~----~~~~~~A~~~~~~al~~~p~~~~-----------------------------~~~~~~~~~lg~~~~~~~~~~ 124 (229)
+.. ..+...|...++++....+.... ......+..+|.+ +.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~------~~ 153 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSL------YD 153 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH------HH
T ss_pred cccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhh------hc
Confidence 543 34566666666666665432200 0011222222222 32
Q ss_pred c----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHH--
Q psy13014 125 S----LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDPNNRDAYVATKVSPDLK-- 194 (229)
Q Consensus 125 ~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-- 194 (229)
. ..+...+..+++.+.+ +.++.+++++|.++.. ..++++|+.+|+++.+.+ ++.+.+++|.++ .+
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y-~~G~ 228 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQ-YNGE 228 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH-HTTS
T ss_pred cCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHH-HcCC
Confidence 2 3455566666666654 5678899999999987 678999999999998874 688999999988 33
Q ss_pred --Hhhhhhccccccccc
Q psy13014 195 --LKEKNGATKLSPDVF 209 (229)
Q Consensus 195 --~~~~~~a~~~~~~~~ 209 (229)
.++..+|++.|.++.
T Consensus 229 g~~~n~~~A~~~~~kAa 245 (265)
T d1ouva_ 229 GVTRNEKQAIENFKKGC 245 (265)
T ss_dssp SSSCCSTTHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHH
Confidence 235777877777765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.83 E-value=4.5e-09 Score=75.37 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=88.2
Q ss_pred hhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCc----------------------HHHHHHHHHHHHhcc
Q psy13014 104 VSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSY----------------------LKVYQRRARLYQQSD 161 (229)
Q Consensus 104 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~ 161 (229)
..+...+...|.. ....|++++|+..|.+|+.+.+.. ..++..++.++...|
T Consensus 8 ~~~f~~~~~~g~~------~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 8 LGRFVAEKTAGVH------AAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3457778889999 999999999999999999987644 246888999999999
Q ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHhccCchHHHhhhhhcccccccc
Q psy13014 162 KLDEALADYQKILELDPNNRDAYVATKVSPDLKLKEKNGATKLSPDV 208 (229)
Q Consensus 162 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 208 (229)
++++|+.+++++++++|.+..+|..++.++ ...++..+|++.|.+.
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al-~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAY-YLSDRQSDALGAYRRV 127 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HTTTCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 999999999999999999999999999999 8899999999888876
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.77 E-value=3.7e-08 Score=65.25 Aligned_cols=79 Identities=8% Similarity=-0.074 Sum_probs=70.0
Q ss_pred HHHHHhHhhhhhhhHHhhccC---ChHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCcHH
Q psy13014 107 AVFYANRSAALEKLASYLSLE---KPDQSILACSKAITLNPSYL-KVYQRRARLYQQSDKLDEALADYQKILELDPNNRD 182 (229)
Q Consensus 107 ~~~~~~lg~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 182 (229)
....++.|.+ +.+.. +.++||..++.+++.+|.+. ++++++|.+|.++|+|++|..+++++++++|++..
T Consensus 35 ~qt~F~YAw~------Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~q 108 (124)
T d2pqrb1 35 IQSRFNYAWG------LIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 108 (124)
T ss_dssp HHHHHHHHHH------HHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cchHHHHHHH------HHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHH
Confidence 7788999999 77554 45799999999999999775 79999999999999999999999999999999999
Q ss_pred HHHHhccCc
Q psy13014 183 AYVATKVSP 191 (229)
Q Consensus 183 ~~~~l~~~~ 191 (229)
+......+.
T Consensus 109 A~~L~~~Ie 117 (124)
T d2pqrb1 109 VGALKSMVE 117 (124)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 987776665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.70 E-value=4.4e-08 Score=64.85 Aligned_cols=82 Identities=7% Similarity=-0.045 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCC
Q psy13014 68 AISLKDEGNALFRL---NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNP 144 (229)
Q Consensus 68 ~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p 144 (229)
+.+.|..|.++... .+..+|+..++.+++.+|.. ..++++++|.. |+++|+|++|..+++++++++|
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~----~rd~lY~Lav~------yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR----RRECLYYLTIG------CYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh----HHHHHHHHHHH------HHHHhhHHHHHHHHHHHHccCC
Confidence 56788888888865 45679999999999998865 25899999999 9999999999999999999999
Q ss_pred CcHHHHHHHHHHHHh
Q psy13014 145 SYLKVYQRRARLYQQ 159 (229)
Q Consensus 145 ~~~~~~~~la~~~~~ 159 (229)
++..+....-.+...
T Consensus 105 ~n~qA~~L~~~Ie~~ 119 (124)
T d2pqrb1 105 NNKQVGALKSMVEDK 119 (124)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 999987776665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.36 E-value=5.3e-06 Score=62.10 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhc----cCChHHHHHHHHHHHhc
Q psy13014 67 TAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLS----LEKPDQSILACSKAITL 142 (229)
Q Consensus 67 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~ 142 (229)
+|.+++.+|..++..+++.+|+.+|+++.+. .+ ..+++++|.+ |.. ..++..|..++..+...
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~-----~~A~~~Lg~~------y~~G~~~~~d~~~a~~~~~~a~~~ 67 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KE-----NSGCFNLGVL------YYQGQGVEKNLKKAASFYAKACDL 67 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TC-----HHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CC-----HHHHHHHHHH------HHcCCCcchhHHHHHHhhcccccc
Confidence 3678999999999999999999999999875 45 8899999999 876 67899999999998764
Q ss_pred CCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCCc
Q psy13014 143 NPSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDPNN 180 (229)
Q Consensus 143 ~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~ 180 (229)
.++.+...+|.++.. .++.++|...++.+....+..
T Consensus 68 --~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~ 107 (265)
T d1ouva_ 68 --NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE 107 (265)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred --cccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh
Confidence 477888888888775 467899999999998876543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.34 E-value=5.3e-06 Score=55.80 Aligned_cols=113 Identities=9% Similarity=-0.049 Sum_probs=86.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHH
Q psy13014 32 SEIRTDCHQFERQVFYIQFIFHVLFYLFCSQKLEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYA 111 (229)
Q Consensus 32 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 111 (229)
.++++|..+|+++.. ..++.+.+.+|. ....++++|+..|+++.+. .+ +.+.+
T Consensus 7 kd~~~A~~~~~kaa~------------------~g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~-----~~a~~ 59 (133)
T d1klxa_ 7 KDLKKAIQYYVKACE------------------LNEMFGCLSLVS--NSQINKQKLFQYLSKACEL--NS-----GNGCR 59 (133)
T ss_dssp HHHHHHHHHHHHHHH------------------TTCTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TC-----HHHHH
T ss_pred cCHHHHHHHHHHHHH------------------CCChhhhhhhcc--ccccCHHHHHHHHhhhhcc--cc-----hhhhh
Confidence 467788888877652 123334445543 3457889999999999875 45 88899
Q ss_pred hHhhhhhhhHHhhc----cCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh----cccHHHHHHHHHHHHHhCCC
Q psy13014 112 NRSAALEKLASYLS----LEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ----SDKLDEALADYQKILELDPN 179 (229)
Q Consensus 112 ~lg~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~ 179 (229)
.+|.+ |.. ..++++|+.+|+++.+. .++.+.+++|.+|.. ..++++|+.+|+++.+....
T Consensus 60 ~Lg~~------y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 60 FLGDF------YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHH------HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred hHHHh------hhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 99998 765 56789999999999875 568889999999987 46899999999999887643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=2.6e-06 Score=57.36 Aligned_cols=108 Identities=17% Similarity=0.117 Sum_probs=85.8
Q ss_pred cCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh--
Q psy13014 82 NQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQ-- 159 (229)
Q Consensus 82 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 159 (229)
.++++|+..|+++.+.. + +.+..++|.. ...++++|+.+++++.+. +++.+.+.+|.+|..
T Consensus 7 kd~~~A~~~~~kaa~~g--~-----~~a~~~l~~~--------~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~ 69 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--E-----MFGCLSLVSN--------SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK 69 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--C-----TTHHHHHHTC--------TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHHCC--C-----hhhhhhhccc--------cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhcc
Confidence 57889999999999875 3 4556667655 457899999999999875 688999999999986
Q ss_pred --cccHHHHHHHHHHHHHhCCCcHHHHHHhccCchHH----Hhhhhhccccccccc
Q psy13014 160 --SDKLDEALADYQKILELDPNNRDAYVATKVSPDLK----LKEKNGATKLSPDVF 209 (229)
Q Consensus 160 --~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----~~~~~~a~~~~~~~~ 209 (229)
..++++|+.+|+++.+. .++.+...++.++ .. .++..+|++.|.++.
T Consensus 70 ~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y-~~G~gv~~d~~~A~~~~~~Aa 122 (133)
T d1klxa_ 70 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQ-YAGKGVVKNEKQAVKTFEKAC 122 (133)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHhhhhcc--CcchHHHHHHHHH-HcCCccCCCHHHHHHHHHHHH
Confidence 56799999999999876 5688899999988 33 245667777666654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.34 E-value=1.6 Score=33.97 Aligned_cols=95 Identities=9% Similarity=-0.069 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCCcHH
Q psy13014 69 ISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPSYLK 148 (229)
Q Consensus 69 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 148 (229)
.....++......+..+.+............+ ......++.. ....+++..+...++..-.-....+.
T Consensus 253 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~w~~~~------al~~~~~~~~~~~~~~l~~~~~~~~r 320 (450)
T d1qsaa1 253 ELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS------TSLIERRVRM------ALGTGDRRGLNTWLARLPMEAKEKDE 320 (450)
T ss_dssp HHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC------HHHHHHHHHH------HHHHTCHHHHHHHHHHSCTTGGGSHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhhcccccc------hHHHHHHHHH------HHHcCChHHHHHHHHhcCcccccHHH
Confidence 33444444455567777888777776665443 3333333334 44568999988888765333334477
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH
Q psy13014 149 VYQRRARLYQQSDKLDEALADYQKILE 175 (229)
Q Consensus 149 ~~~~la~~~~~~~~~~~A~~~~~~al~ 175 (229)
..|-+|.++..+|+.++|...|..+..
T Consensus 321 ~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 321 WRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 889999999999999999999998864
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.29 E-value=0.68 Score=26.89 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q psy13014 65 EQTAISLKDEGNALFRLNQWSESLAKYNEALR 96 (229)
Q Consensus 65 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 96 (229)
-+.+..+-..++.+...|.|++||++++++..
T Consensus 5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~ 36 (83)
T d2crba1 5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATT 36 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667778899999999999999999887755
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.88 E-value=6.9 Score=30.11 Aligned_cols=101 Identities=6% Similarity=-0.097 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCc------------------------hhhHHHHHhHhhhhhh
Q psy13014 64 LEQTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCS------------------------VSRAVFYANRSAALEK 119 (229)
Q Consensus 64 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------------~~~~~~~~~lg~~~~~ 119 (229)
....+...+..|..+...|+.++|...|..+-.. ++... ......-...+..
T Consensus 315 ~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~--- 390 (450)
T d1qsaa1 315 AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRE--- 390 (450)
T ss_dssp GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHH---
T ss_pred cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHH---
Confidence 3345677899999999999999999999987652 22100 0000111122233
Q ss_pred hHHhhccCChHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccHHHHHHHHHHH
Q psy13014 120 LASYLSLEKPDQSILACSKAITLNPSYLKVYQRRARLYQQSDKLDEALADYQKI 173 (229)
Q Consensus 120 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a 173 (229)
++..|+...|...+..++.. .+..-...+|.+....|.++.||....++
T Consensus 391 ---L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 391 ---LMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp ---HHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ---HHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 66667777777766665543 23445556677777777777777665544
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.55 E-value=1 Score=26.12 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=21.8
Q ss_pred hHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHh
Q psy13014 106 RAVFYANRSAALEKLASYLSLEKPDQSILACSKAIT 141 (229)
Q Consensus 106 ~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~ 141 (229)
++..+...|.- +...|.|++||++.++|..
T Consensus 7 ~AH~~~RrAer------~l~~~rydeAIech~kA~~ 36 (83)
T d2crba1 7 LAHQQSRRADR------LLAAGKYEEAISCHRKATT 36 (83)
T ss_dssp HHHHHHHHHHH------HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHcCCHHHHHHHHHHHHH
Confidence 35556666666 8888999999888777643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.72 E-value=8.3 Score=28.68 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCchhhHHHHHhHhhhhhhhHHhhccCChHHHHHHHHHHHhcCCC
Q psy13014 66 QTAISLKDEGNALFRLNQWSESLAKYNEALRSCPRSCSVSRAVFYANRSAALEKLASYLSLEKPDQSILACSKAITLNPS 145 (229)
Q Consensus 66 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~ 145 (229)
+....|......+.+..+..-|..+ ...+. .. +.-....-.. |...|.+++.+.+++.++...+.
T Consensus 67 ~~~~~~k~~~~~l~~~~e~~la~i~-~~~~~---~~-----~d~l~~~v~~------ye~~~~~e~Li~~Le~~~~~~~~ 131 (336)
T d1b89a_ 67 NSTRTWKEVCFACVDGKEFRLAQMC-GLHIV---VH-----ADELEELINY------YQDRGYFEELITMLEAALGLERA 131 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHT-TTTTT---TC-----HHHHHHHHHH------HHHTTCHHHHHHHHHHHTTSTTC
T ss_pred CCHHHHHHHHHHHHhCcHHHHHHHH-HHHhh---cC-----HHHHHHHHHH------HHHcCChHHHHHHHHHHHcCCcc
Confidence 3444566666666665555443211 00011 11 3333344555 77788899999999999888888
Q ss_pred cHHHHHHHHHHHHhcccHHHHHHHH
Q psy13014 146 YLKVYQRRARLYQQSDKLDEALADY 170 (229)
Q Consensus 146 ~~~~~~~la~~~~~~~~~~~A~~~~ 170 (229)
+...+..++.++.+.+. ++-.+.+
T Consensus 132 ~~~~~~~L~~lyak~~~-~kl~e~l 155 (336)
T d1b89a_ 132 HMGMFTELAILYSKFKP-QKMREHL 155 (336)
T ss_dssp CHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred chHHHHHHHHHHHHhCh-HHHHHHH
Confidence 88888889888877653 3433443
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