Psyllid ID: psy13054
Local Sequence Feature Prediction
Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
Query | 1128 | 2.2.26 [Sep-21-2011] | |||||||
Q9UBQ7 | 328 | Glyoxylate reductase/hydr | yes | N/A | 0.222 | 0.765 | 0.460 | 7e-54 | |
Q91Z53 | 328 | Glyoxylate reductase/hydr | yes | N/A | 0.222 | 0.765 | 0.457 | 2e-53 | |
A1RYE4 | 339 | Glyoxylate reductase OS=T | yes | N/A | 0.216 | 0.719 | 0.452 | 1e-50 | |
B1L765 | 332 | Glyoxylate reductase OS=K | yes | N/A | 0.216 | 0.734 | 0.393 | 2e-42 | |
Q9C4M5 | 331 | Glyoxylate reductase OS=T | N/A | N/A | 0.216 | 0.737 | 0.422 | 2e-41 | |
Q8U3Y2 | 336 | Glyoxylate reductase OS=P | no | N/A | 0.242 | 0.812 | 0.369 | 7e-41 | |
Q663W4 | 326 | Glyoxylate/hydroxypyruvat | yes | N/A | 0.238 | 0.825 | 0.359 | 1e-40 | |
A4TGN1 | 326 | Glyoxylate/hydroxypyruvat | yes | N/A | 0.238 | 0.825 | 0.359 | 1e-40 | |
A9R4G6 | 326 | Glyoxylate/hydroxypyruvat | yes | N/A | 0.238 | 0.825 | 0.359 | 1e-40 | |
Q0W9V5 | 326 | Glyoxylate/hydroxypyruvat | yes | N/A | 0.238 | 0.825 | 0.359 | 1e-40 |
>sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1 | Back alignment and function desciption |
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Score = 213 bits (542), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 118/256 (46%), Positives = 153/256 (59%), Gaps = 5/256 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG DHL L EIK RGIRVG + +DT AE + L + RR E + + Sbjct: 74 NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV 133 Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-E 992 +G W + K + G GL +TVGI+GLG IG A+ LK F V + LYT R+ + E Sbjct: 134 KNGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 190 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 E A+ V L A+SDFI V C+LT TE L + F MK TA+ +N SRG +++ Sbjct: 191 EAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVN 250 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 Q+ L + L KI AGLDV PEPLP +HPL+ L NCV+ PH SAT R+ S +A Sbjct: 251 QDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAA 310 Query: 1113 ENIIRGYKGEPMIYEL 1128 N++ G +GEPM EL Sbjct: 311 NNLLAGLRGEPMPSEL 326 |
Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate. Homo sapiens (taxid: 9606) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1 |
>sp|Q91Z53|GRHPR_MOUSE Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1 | Back alignment and function description |
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Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 117/256 (45%), Positives = 152/256 (59%), Gaps = 5/256 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NL+VI+T SVG DHL L EIK RGIRVG + +D AE + L + RR E + + Sbjct: 74 NLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEV 133 Query: 935 TSGEWA-LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-E 992 +G W+ + G GL +TVGIVGLG IG A+ LK F V + LYT R+ + + Sbjct: 134 KNGGWSSWSPLWMCG---YGLSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQ 190 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 E A+ VP+ L AESDFI V+C+LT DT L + F MK TAI +N SRG +++ Sbjct: 191 EAAEFQAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVN 250 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 QE L + L +I AGLDV PEPLP HPL+ L NCV+ PH SAT R+ S +A Sbjct: 251 QEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMSLLAA 310 Query: 1113 ENIIRGYKGEPMIYEL 1128 N++ G +GE M EL Sbjct: 311 NNLLAGLRGEAMPSEL 326 |
Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 1 |
>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1 | Back alignment and function description |
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Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 114/252 (45%), Positives = 152/252 (60%), Gaps = 8/252 (3%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T+SVG+DH+++ E RGI V + +D VAE+ +GL +AV+RR E K I Sbjct: 69 NLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEADKII 128 Query: 935 TSGEW--ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY--TSRRV 990 +G+W + GP LKG T+G+VGLG IG+ TAK L +F V KILY RR Sbjct: 129 RTGQWDKPWNPYFLTGPE---LKGKTIGLVGLGRIGVATAKRLSSFDV-KILYYDIERRW 184 Query: 991 KEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 E + LDTL +SD + + LTK+T LI ++ MK TA L+NT+RG + Sbjct: 185 DVETVIPNMEFTDLDTLLEKSDIVSIHVPLTKETYHLINEERLRKMKKTAYLINTARGPV 244 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 +D EALV+ LK+ I GA LDV EPLP +HPL + DN VL PH +SAT R + Sbjct: 245 VDTEALVKALKEGWIAGAALDVFEQEPLPPNHPLTKFDNVVLAPHIASATIEARQRMAEL 304 Query: 1111 SAENIIRGYKGE 1122 +A N+I KGE Sbjct: 305 AARNLIAVLKGE 316 |
Thermofilum pendens (strain Hrk 5) (taxid: 368408) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 6 |
>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1 | Back alignment and function description |
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Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 151/249 (60%), Gaps = 5/249 (2%) Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935 L+++ ++VGYD++++ E RGI V + + ++T A++ L +A +RR E + + Sbjct: 68 LRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVR 127 Query: 936 SGEW--ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 G+W A ++G ++ G T+GIVG+G IG A+ K F + + Y S R ++ Sbjct: 128 EGKWKVAWHPMMMLGYDVYG---RTLGIVGMGRIGAAVARRAKGFGMRILYYDSIRREDF 184 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 LG + VPL+ L ESDF+ + LT++T +IG +Q MK TAILVNTSRG ++DQ Sbjct: 185 EKELGVEYVPLEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQ 244 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 +AL + LK+ I GAGLDV EP+P D PL++L+N VL PH +SA+ R + AE Sbjct: 245 KALYKALKEGWIAGAGLDVFEQEPIPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAE 304 Query: 1114 NIIRGYKGE 1122 N+I +GE Sbjct: 305 NLIAFKRGE 313 |
Korarchaeum cryptofilum (strain OPF8) (taxid: 374847) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 6 |
>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1 | Back alignment and function description |
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Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 106/251 (42%), Positives = 146/251 (58%), Gaps = 7/251 (2%) Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935 LK+I ++VGYD++++ E RGI V + + +D A+ L +AV+RR E + Sbjct: 68 LKIIAQYAVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVR 127 Query: 936 SGEWALKQTHIIGPNIM----GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 SGEW K++ + +M GLKG T+GIVG G IG AK K F + I Y+ R Sbjct: 128 SGEW--KKSEVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAKRAKGFGMKIIYYSRTRKP 185 Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 E +GA+ V +TL ESDFI + LTK+T +IG K+ LMKP AIL+NTSRG ++ Sbjct: 186 EAEEEIGAEYVDFETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVV 245 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 D AL++ LK+ I GAGLDV EP + L +L N VL PH SAT R+ + Sbjct: 246 DTNALIKALKEGWIAGAGLDVFEEEPY-YNEELFKLKNVVLAPHIGSATHEAREGMAELV 304 Query: 1112 AENIIRGYKGE 1122 A+N+I KGE Sbjct: 305 AKNLIAFAKGE 315 |
Thermococcus litoralis (taxid: 2265) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 6 |
>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1 | Back alignment and function description |
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Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 103/279 (36%), Positives = 154/279 (55%), Gaps = 6/279 (2%) Query: 849 KLLKAFKVSKILYTSRNKVKTPKRTEN---LKVITTFSVGYDHLELHEIKARGIRVGSVG 905 KLL+ K L T ++ + EN L+++ ++VGYD++++ E RGI V + Sbjct: 38 KLLEKVKDVDALVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTP 97 Query: 906 HISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGIVG 963 + ++ A++ L +A +R +G K + SGEW K +G L G T+GIVG Sbjct: 98 DVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVG 157 Query: 964 LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKD 1023 G IG A+ K F + + Y+ R + LGA+ PL+ + ESDF+ + LTK+ Sbjct: 158 FGRIGQAIARRAKGFNMRILYYSRTRKSQAEKELGAEYRPLEEVLKESDFVILAVPLTKE 217 Query: 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 T +I ++ LMKPTAILVN +RG ++D +AL++ LK+ I GAGLDV EP + Sbjct: 218 TMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDVFEEEPY-YNEE 276 Query: 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGE 1122 L LDN VLTPH SAT R+ + A N+I +GE Sbjct: 277 LFSLDNVVLTPHIGSATFEAREAMAELVARNLIAFKRGE 315 |
Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 6 |
>sp|Q663W4|GHRB_YERPS Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=ghrB PE=3 SV=1 | Back alignment and function description |
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Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 155/278 (55%), Gaps = 9/278 (3%) Query: 849 KLLKAFKVSKILYTSRNKVKTP--KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGH 906 +LL A + ++ L S K+ + NL+ +T SVGYD+ ++ + RGI + Sbjct: 38 ELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPT 97 Query: 907 ISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLK--GATVGIVGL 964 + ++TVA+ + L ++ +RR E + + +GEW IG + G+ T+GI+G+ Sbjct: 98 VLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDWFGVDVHHKTIGILGM 153 Query: 965 GNIGLETAKLLKAFKVSKILYTSRRVKEEGTA-LGAQLVPLDTLCAESDFIFVTCALTKD 1023 G IG+ A+ +LYTSRR E GA+ LDTL AE+DF+ +T +T+ Sbjct: 154 GRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQ 213 Query: 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 T +IGR+Q + MK +AIL+N RG ++D++AL+ L+D I AGLDV EPLP D P Sbjct: 214 TYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSP 273 Query: 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKG 1121 L+ L N V PH SAT R ++ + +N+I G Sbjct: 274 LLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTG 311 |
Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Yersinia pseudotuberculosis (taxid: 633) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 1 |
>sp|A4TGN1|GHRB_YERPP Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1 | Back alignment and function description |
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Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 155/278 (55%), Gaps = 9/278 (3%) Query: 849 KLLKAFKVSKILYTSRNKVKTP--KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGH 906 +LL A + ++ L S K+ + NL+ +T SVGYD+ ++ + RGI + Sbjct: 38 ELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPT 97 Query: 907 ISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLK--GATVGIVGL 964 + ++TVA+ + L ++ +RR E + + +GEW IG + G+ T+GI+G+ Sbjct: 98 VLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDWFGVDVHHKTIGILGM 153 Query: 965 GNIGLETAKLLKAFKVSKILYTSRRVKEEGTA-LGAQLVPLDTLCAESDFIFVTCALTKD 1023 G IG+ A+ +LYTSRR E GA+ LDTL AE+DF+ +T +T+ Sbjct: 154 GRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQ 213 Query: 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 T +IGR+Q + MK +AIL+N RG ++D++AL+ L+D I AGLDV EPLP D P Sbjct: 214 TYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSP 273 Query: 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKG 1121 L+ L N V PH SAT R ++ + +N+I G Sbjct: 274 LLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTG 311 |
Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Yersinia pestis (strain Pestoides F) (taxid: 386656) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 1 |
>sp|A9R4G6|GHRB_YERPG Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1 | Back alignment and function description |
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Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 155/278 (55%), Gaps = 9/278 (3%) Query: 849 KLLKAFKVSKILYTSRNKVKTP--KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGH 906 +LL A + ++ L S K+ + NL+ +T SVGYD+ ++ + RGI + Sbjct: 38 ELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPT 97 Query: 907 ISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLK--GATVGIVGL 964 + ++TVA+ + L ++ +RR E + + +GEW IG + G+ T+GI+G+ Sbjct: 98 VLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDWFGVDVHHKTIGILGM 153 Query: 965 GNIGLETAKLLKAFKVSKILYTSRRVKEEGTA-LGAQLVPLDTLCAESDFIFVTCALTKD 1023 G IG+ A+ +LYTSRR E GA+ LDTL AE+DF+ +T +T+ Sbjct: 154 GRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQ 213 Query: 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 T +IGR+Q + MK +AIL+N RG ++D++AL+ L+D I AGLDV EPLP D P Sbjct: 214 TYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSP 273 Query: 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKG 1121 L+ L N V PH SAT R ++ + +N+I G Sbjct: 274 LLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTG 311 |
Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Yersinia pestis bv. Antiqua (strain Angola) (taxid: 349746) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 1 |
>sp|Q0W9V5|GHRB_YERPE Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis GN=ghrB PE=3 SV=1 | Back alignment and function description |
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Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 100/278 (35%), Positives = 155/278 (55%), Gaps = 9/278 (3%) Query: 849 KLLKAFKVSKILYTSRNKVKTP--KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGH 906 +LL A + ++ L S K+ + NL+ +T SVGYD+ ++ + RGI + Sbjct: 38 ELLAALQQAEGLIGSGGKIDQDFLQLAPNLRAASTISVGYDNFDVEALSQRGIALMHTPT 97 Query: 907 ISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLK--GATVGIVGL 964 + ++TVA+ + L ++ +RR E + + +GEW IG + G+ T+GI+G+ Sbjct: 98 VLTETVADTMMALMLSTARRVVELAERVKAGEW----QESIGDDWFGVDVHHKTIGILGM 153 Query: 965 GNIGLETAKLLKAFKVSKILYTSRRVKEEGTA-LGAQLVPLDTLCAESDFIFVTCALTKD 1023 G IG+ A+ +LYTSRR E GA+ LDTL AE+DF+ +T +T+ Sbjct: 154 GRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQ 213 Query: 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 T +IGR+Q + MK +AIL+N RG ++D++AL+ L+D I AGLDV EPLP D P Sbjct: 214 TYHMIGREQLAKMKSSAILINAGRGPVVDEQALIAALQDGTIHAAGLDVFEQEPLPVDSP 273 Query: 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKG 1121 L+ L N V PH SAT R ++ + +N+I G Sbjct: 274 LLTLRNVVAVPHIGSATHETRYNMAACAVDNLINALTG 311 |
Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Yersinia pestis (taxid: 632) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
Query | 1128 | ||||||
328784463 | 363 | PREDICTED: glyoxylate reductase/hydroxyp | 0.217 | 0.674 | 0.497 | 1e-60 | |
380016588 | 325 | PREDICTED: LOW QUALITY PROTEIN: glyoxyla | 0.218 | 0.756 | 0.5 | 7e-60 | |
317575680 | 327 | glyoxylate reductase/hydroxypyruvate red | 0.222 | 0.767 | 0.474 | 6e-59 | |
340721215 | 364 | PREDICTED: glyoxylate reductase/hydroxyp | 0.217 | 0.673 | 0.485 | 1e-58 | |
66472696 | 327 | glyoxylate reductase/hydroxypyruvate red | 0.222 | 0.767 | 0.474 | 9e-58 | |
193659821 | 330 | PREDICTED: glyoxylate reductase/hydroxyp | 0.213 | 0.730 | 0.485 | 1e-57 | |
33468556 | 327 | novel protein similar to human glyoxylat | 0.222 | 0.767 | 0.470 | 2e-57 | |
363744954 | 326 | PREDICTED: glyoxylate reductase/hydroxyp | 0.222 | 0.769 | 0.476 | 2e-57 | |
225706132 | 328 | Glyoxylate reductase/hydroxypyruvate red | 0.222 | 0.765 | 0.462 | 4e-57 | |
213515414 | 328 | glyoxylate reductase/hydroxypyruvate red | 0.222 | 0.765 | 0.462 | 4e-57 |
>gi|328784463|ref|XP_003250454.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like [Apis mellifera] | Back alignment and taxonomy information |
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Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 124/249 (49%), Positives = 160/249 (64%), Gaps = 4/249 (1%) Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935 LKV+ + SVG DHL+L +K R I+VG I +D AE I L +A SRR E + + Sbjct: 109 LKVVASMSVGVDHLDLQALKKRNIKVGYTPGILTDATAELTIALLLATSRRLIEANRAVY 168 Query: 936 SGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 GEW A T + GP GL +T+GIVGLG IG++ AK LK+F S+ILYTSR VK+E Sbjct: 169 EGEWKAWSPTWMCGP---GLSNSTIGIVGLGRIGIQVAKCLKSFNTSRILYTSRNVKQEA 225 Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 + G + V LD L +SDF+ VT ALT DT Q+ + F MK +AI +N SRG ++DQ Sbjct: 226 SEFGGEKVKLDILLEKSDFVIVTIALTPDTRQMFNQNTFKKMKKSAIFINVSRGEVVDQS 285 Query: 1055 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAEN 1114 AL+E LK+K I AGLDVM PEP+P D L++LDNCV+ PH SA R+E S +A+N Sbjct: 286 ALIEALKNKIIRAAGLDVMTPEPIPLDSELLKLDNCVILPHIGSAAIETREEMSIITAKN 345 Query: 1115 IIRGYKGEP 1123 II KG P Sbjct: 346 IIAVLKGSP 354 |
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
>gi|380016588|ref|XP_003692262.1| PREDICTED: LOW QUALITY PROTEIN: glyoxylate reductase/hydroxypyruvate reductase-like [Apis florea] | Back alignment and taxonomy information |
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Score = 239 bits (610), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 125/250 (50%), Positives = 159/250 (63%), Gaps = 4/250 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 LKV+ + SVG DHL+L +K R I+VG I +D AE I L +A SRR E + + Sbjct: 70 QLKVVASMSVGVDHLDLQALKKRNIKVGYTPGILTDATAELTIALLLATSRRLIEANRAV 129 Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 GEW A T + GP GL +T+GIVGLG IG++ AK LK+F SKILYTSR VK+E Sbjct: 130 YKGEWKAWSPTWMCGP---GLSKSTIGIVGLGRIGIQVAKCLKSFNTSKILYTSRNVKQE 186 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 + G + V LD L +SDFI VT ALT DT Q+ + F MK +AI +N SRG ++DQ Sbjct: 187 ASEFGGEKVKLDILLEKSDFIIVTVALTPDTRQMFNQNTFKKMKKSAIFINVSRGEVVDQ 246 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 AL+E LK+ I AGLDVM PEP+P D L++LDNCV+ PH SA R+E S +A+ Sbjct: 247 SALIEALKNGIIKAAGLDVMTPEPIPLDSELLKLDNCVILPHIGSAAIETREEMSIITAK 306 Query: 1114 NIIRGYKGEP 1123 NII KG P Sbjct: 307 NIIAVLKGTP 316 |
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
>gi|317575680|ref|NP_001187384.1| glyoxylate reductase/hydroxypyruvate reductase [Ictalurus punctatus] gi|308322871|gb|ADO28573.1| glyoxylate reductase/hydroxypyruvate reductase [Ictalurus punctatus] | Back alignment and taxonomy information |
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Score = 236 bits (602), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 121/255 (47%), Positives = 166/255 (65%), Gaps = 4/255 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG+DHL + EIK RGIRVG + +D AE + L +A +RR EG + + Sbjct: 74 NLKVISTMSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGIQEV 133 Query: 935 TSGEWA-LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 SG W+ K + G GL G+TVG++GLG IGL A+ LK F V + LY+ R+ K + Sbjct: 134 KSGGWSSWKPLWLCG---YGLSGSTVGVIGLGRIGLAIAQRLKPFGVKRRLYSGRQPKPQ 190 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 LG + VPLDTL ESDF+ V+C+L DT++L + FS MK TA+ +NTSRG +++Q Sbjct: 191 AGELGGEYVPLDTLLCESDFVVVSCSLNPDTQELCNKAFFSKMKNTAVFINTSRGAVVNQ 250 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 E L++ L +I AGLDV PEPLP DHPL++L+NCV+ PH SAT + R + SA+ Sbjct: 251 EDLLDALTSGQIAAAGLDVTTPEPLPTDHPLLRLNNCVVLPHIGSATFSTRGVMAELSAQ 310 Query: 1114 NIIRGYKGEPMIYEL 1128 N++ G + M EL Sbjct: 311 NLLSGLTEDAMPSEL 325 |
Source: Ictalurus punctatus Species: Ictalurus punctatus Genus: Ictalurus Family: Ictaluridae Order: Siluriformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
>gi|340721215|ref|XP_003399020.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like [Bombus terrestris] | Back alignment and taxonomy information |
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Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 121/249 (48%), Positives = 158/249 (63%), Gaps = 4/249 (1%) Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935 LKV+ + SVG DHL+L +K R I+VG I +D AE + L +A SRR E + I Sbjct: 110 LKVVASMSVGVDHLDLQALKKRNIKVGYTPGILTDATAELTVALLLATSRRLIEANRAIY 169 Query: 936 SGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 GEW A T + GP GL G+TVGIVGLG IG++ A+ LK F +KILYTSR +K+E Sbjct: 170 KGEWKAWSPTWMCGP---GLSGSTVGIVGLGRIGIQVARCLKGFNTAKILYTSRSIKQEA 226 Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 + G + V LD L +SDF+ VT ALT DT Q+ + F MK +AI +N SRG ++DQ Sbjct: 227 SEFGGEKVELDMLLEKSDFVIVTTALTLDTRQMFNKNTFKKMKRSAIFINVSRGEVVDQS 286 Query: 1055 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAEN 1114 AL+E LK I AGLDV PEP+P D+ L++LDNCV+ PH SA R+E S +A+N Sbjct: 287 ALIEALKSGIIKAAGLDVTTPEPIPLDNELLKLDNCVVLPHIGSAATETREEMSIITAKN 346 Query: 1115 IIRGYKGEP 1123 I+ KG P Sbjct: 347 IMAVLKGTP 355 |
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
>gi|66472696|ref|NP_001018361.1| glyoxylate reductase/hydroxypyruvate reductase [Danio rerio] gi|63100524|gb|AAH95040.1| Glyoxylate reductase/hydroxypyruvate reductase [Danio rerio] | Back alignment and taxonomy information |
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Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 121/255 (47%), Positives = 161/255 (63%), Gaps = 4/255 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG+DHL + EIK RGIRVG + +D AE + L +A +RR EG + + Sbjct: 74 NLKVISTLSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGVEEV 133 Query: 935 TSGEWA-LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 +G W+ K + G GL G+TVG++GLG IGL A+ LK F V K+LYT R+ K E Sbjct: 134 KNGGWSTWKPLWLCG---YGLSGSTVGVIGLGRIGLAIARRLKPFGVKKLLYTGRKPKPE 190 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 + + VPLDTL ESDF+ V+C+LT DT+ L + F MK T++ +NTSRG +++Q Sbjct: 191 AEEVDGEYVPLDTLVRESDFVVVSCSLTPDTQGLCDKTFFGKMKKTSVFINTSRGAVVNQ 250 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 E L E L +I AGLDV PEPLP +HPL+ L NCV+ PH SAT + R S +A Sbjct: 251 EDLFEALSSGQIAAAGLDVTSPEPLPTNHPLLTLKNCVVLPHIGSATYSTRGVMSELTAN 310 Query: 1114 NIIRGYKGEPMIYEL 1128 N++ G G M EL Sbjct: 311 NLLAGLTGSEMPSEL 325 |
Source: Danio rerio Species: Danio rerio Genus: Danio Family: Cyprinidae Order: Cypriniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
>gi|193659821|ref|XP_001952060.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like isoform 1 [Acyrthosiphon pisum] gi|328704005|ref|XP_003242374.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 119/245 (48%), Positives = 166/245 (67%), Gaps = 4/245 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 +LKV+ T SVGYDH++L +K G+R+G H+ S+TVAE +GL IA +RRF E + Sbjct: 73 SLKVVGTISVGYDHVDLTAMKKYGVRLGYTPHVLSETVAETTVGLLIATTRRFFEANHAL 132 Query: 935 TSGEWALKQTHIIGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 +G W T ++ N M G++ + VGIVG GNIG A+ LK F +S++LYTSR K Sbjct: 133 KTGGWK-DVTTVVWMNWMCGRGIRNSVVGIVGCGNIGTSIARKLKTFDISQLLYTSRTEK 191 Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 ALG +LV +D L +SDFI ++ AL +DT+ +I R++ + MK A+LVN RGGL+ Sbjct: 192 PAVKALGGKLVTIDELVEQSDFIILSIALNEDTKFIINRERIAKMKSHAVLVNIGRGGLI 251 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 DQ+AL+E L++ +IGGAGLDVM PEPLP D PL+++DN VL PH SA+ R E + + Sbjct: 252 DQDALIEALQENRIGGAGLDVMTPEPLPLDSPLMKMDNVVLLPHIGSASIETRAEMAILT 311 Query: 1112 AENII 1116 A+NII Sbjct: 312 AKNII 316 |
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
>gi|33468556|emb|CAE30406.1| novel protein similar to human glyoxylate reductase/hydroxypyruvate reductase (GRHPR) [Danio rerio] | Back alignment and taxonomy information |
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Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 120/255 (47%), Positives = 161/255 (63%), Gaps = 4/255 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG+DHL + EIK RGIRVG + +D AE + L +A +RR EG + + Sbjct: 74 NLKVISTLSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGVEEV 133 Query: 935 TSGEWA-LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 +G W+ K + G GL G+TVG++GLG IGL A+ LK F V K+LYT R+ K E Sbjct: 134 KNGGWSTWKPLWLCG---YGLSGSTVGVIGLGRIGLAIARRLKPFGVKKLLYTGRKPKPE 190 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 + + VPLDTL ESDF+ V+C+LT DT+ L + F MK T++ +N+SRG +++Q Sbjct: 191 AEEVDGEYVPLDTLVRESDFVVVSCSLTPDTQGLCDKTFFGKMKKTSVFINSSRGAVVNQ 250 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 E L E L +I AGLDV PEPLP +HPL+ L NCV+ PH SAT + R S +A Sbjct: 251 EDLFEALSSGQIAAAGLDVTSPEPLPTNHPLLTLKNCVVLPHIGSATYSTRGVMSELTAN 310 Query: 1114 NIIRGYKGEPMIYEL 1128 N++ G G M EL Sbjct: 311 NLLAGLTGSEMPSEL 325 |
Source: Danio rerio Species: Danio rerio Genus: Danio Family: Cyprinidae Order: Cypriniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
>gi|363744954|ref|XP_424417.3| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Gallus gallus] | Back alignment and taxonomy information |
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Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 122/256 (47%), Positives = 160/256 (62%), Gaps = 5/256 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 +LKVI+T SVG+DHL L EIK RGIRVG + +D AE ++ L +A RR E + Sbjct: 72 SLKVISTMSVGFDHLALDEIKKRGIRVGYTPDVLTDATAELSVALLLATCRRLPEAVSEV 131 Query: 935 TSGEWA-LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 +G W K + G GL G+TVGI+GLG IG A+ LK F V LYT R + E Sbjct: 132 KTGGWTTWKPLWMCG---YGLSGSTVGIIGLGRIGQAVARRLKPFGVKNFLYTGSRPRPE 188 Query: 994 GTA-LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 A A+ VPL L ESDF+ VTCALT DT+ + + FS MK T++ +NTSRG +++ Sbjct: 189 NAAEFQAEFVPLTKLAQESDFVVVTCALTPDTQGMCNKDFFSRMKKTSVFINTSRGAVVN 248 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 QE L + L +I AGLDV PEPLP DHPL++L NCV+ PH SAT A R + +A Sbjct: 249 QEDLYDALVGGQIAAAGLDVTTPEPLPTDHPLLKLRNCVILPHIGSATYATRSTMAVLAA 308 Query: 1113 ENIIRGYKGEPMIYEL 1128 +N++ G +GEPM +EL Sbjct: 309 DNLLAGLRGEPMPHEL 324 |
Source: Gallus gallus Species: Gallus gallus Genus: Gallus Family: Phasianidae Order: Galliformes Class: Aves Phylum: Chordata Superkingdom: Eukaryota |
>gi|225706132|gb|ACO08912.1| Glyoxylate reductase/hydroxypyruvate reductase [Osmerus mordax] | Back alignment and taxonomy information |
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Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 118/255 (46%), Positives = 161/255 (63%), Gaps = 4/255 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG+DHL L E+K RG+RVG + +D AE + L +A +RR EG + + Sbjct: 75 NLKVISTMSVGFDHLSLDEVKKRGVRVGYTPDVLTDATAELTVALLLATARRLPEGVEEV 134 Query: 935 TSGEWA-LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 SG W+ K + G GL G+TVG++GLG IG+ A LK F V ++LY+ R K + Sbjct: 135 KSGGWSTWKPLWLCG---YGLSGSTVGVIGLGRIGMAIATRLKPFGVKRLLYSGRVAKPQ 191 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 + + + VPLDTL AESDF+ V+CALT T+ L + F+ MK T + +NTSRG +++Q Sbjct: 192 ASEVDGEYVPLDTLLAESDFVVVSCALTPQTQGLCDKAFFTKMKNTGVFINTSRGAVVNQ 251 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 E L + L +I AGLDV PEPLP DHPL+ L NCV+ PH SAT + R + SA Sbjct: 252 EDLYQALSGGQIAAAGLDVTTPEPLPTDHPLLTLKNCVVLPHIGSATYSTRGVMAELSAH 311 Query: 1114 NIIRGYKGEPMIYEL 1128 N++ G +G M EL Sbjct: 312 NLLGGLQGSDMPSEL 326 |
Source: Osmerus mordax Species: Osmerus mordax Genus: Osmerus Family: Osmeridae Order: Osmeriformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
>gi|213515414|ref|NP_001135102.1| glyoxylate reductase/hydroxypyruvate reductase [Salmo salar] gi|209147524|gb|ACI32894.1| Glyoxylate reductase/hydroxypyruvate reductase [Salmo salar] | Back alignment and taxonomy information |
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Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 118/255 (46%), Positives = 160/255 (62%), Gaps = 4/255 (1%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG+DH+ + EIK RG+RVG + +D AE + L +A +RR EG + Sbjct: 75 NLKVISTLSVGFDHMAMDEIKKRGVRVGYTPDVLTDATAELTVALLLATARRLPEGVVEV 134 Query: 935 TSGEWA-LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 +G W+ K + G GL G+TVG++GLG IG+ A+ LK F V K+LY+ R K Sbjct: 135 INGGWSTWKPLWLCG---YGLSGSTVGVIGLGRIGMAIARRLKPFGVKKLLYSGRTAKSN 191 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 + + VPLDTL +ESDF+ V+CALT DT+ L + F MK TA+ +NTSRG +++Q Sbjct: 192 AAEVEGEYVPLDTLVSESDFVVVSCALTPDTQGLCNKDFFCKMKNTAVFINTSRGAVVNQ 251 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 E L + L +I AGLDV PEPLP DHPL+ L NCV+ PH SAT + R + SA Sbjct: 252 EDLYQALSSGQIACAGLDVTTPEPLPTDHPLLTLKNCVVLPHIGSATYSTRGIMAELSAN 311 Query: 1114 NIIRGYKGEPMIYEL 1128 N++ G +G M EL Sbjct: 312 NLLAGLQGTDMPSEL 326 |
Source: Salmo salar Species: Salmo salar Genus: Salmo Family: Salmonidae Order: Salmoniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
Query | 1128 | ||||||
ZFIN|ZDB-GENE-040724-230 | 327 | grhpra "glyoxylate reductase/h | 0.222 | 0.767 | 0.470 | 5.4e-61 | |
UNIPROTKB|F1NX57 | 345 | GRHPR "Uncharacterized protein | 0.222 | 0.727 | 0.476 | 5e-60 | |
FB|FBgn0037370 | 362 | CG1236 [Drosophila melanogaste | 0.221 | 0.690 | 0.435 | 6.3e-57 | |
ZFIN|ZDB-GENE-040426-1847 | 361 | grhprb "glyoxylate reductase/h | 0.222 | 0.695 | 0.443 | 2e-55 | |
UNIPROTKB|Q9UBQ7 | 328 | GRHPR "Glyoxylate reductase/hy | 0.222 | 0.765 | 0.460 | 2.6e-54 | |
UNIPROTKB|F1ST73 | 329 | GRHPR "Uncharacterized protein | 0.221 | 0.759 | 0.416 | 1.9e-53 | |
UNIPROTKB|F1PJS0 | 328 | GRHPR "Uncharacterized protein | 0.222 | 0.765 | 0.449 | 1e-52 | |
FB|FBgn0051674 | 327 | CG31674 [Drosophila melanogast | 0.218 | 0.755 | 0.415 | 2.1e-50 | |
UNIPROTKB|F1MB84 | 328 | GRHPR "Uncharacterized protein | 0.222 | 0.765 | 0.460 | 2.7e-49 | |
MGI|MGI:1923488 | 328 | Grhpr "glyoxylate reductase/hy | 0.222 | 0.765 | 0.457 | 4.5e-49 |
ZFIN|ZDB-GENE-040724-230 grhpra "glyoxylate reductase/hydroxypyruvate reductase a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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Score = 581 (209.6 bits), Expect = 5.4e-61, Sum P(2) = 5.4e-61 Identities = 120/255 (47%), Positives = 161/255 (63%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG+DHL + EIK RGIRVG + +D AE + L +A +RR EG + + Sbjct: 74 NLKVISTLSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGVEEV 133 Query: 935 TSGEWAL-KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 +G W+ K + G GL G+TVG++GLG IGL A+ LK F V K+LYT R+ K E Sbjct: 134 KNGGWSTWKPLWLCG---YGLSGSTVGVIGLGRIGLAIARRLKPFGVKKLLYTGRKPKPE 190 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 + + VPLDTL ESDF+ V+C+LT DT+ L + F MK T++ +N+SRG +++Q Sbjct: 191 AEEVDGEYVPLDTLVRESDFVVVSCSLTPDTQGLCDKTFFGKMKKTSVFINSSRGAVVNQ 250 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 E L E L +I AGLDV PEPLP +HPL+ L NCV+ PH SAT + R S +A Sbjct: 251 EDLFEALSSGQIAAAGLDVTSPEPLPTNHPLLTLKNCVVLPHIGSATYSTRGVMSELTAN 310 Query: 1114 NIIRGYKGEPMIYEL 1128 N++ G G M EL Sbjct: 311 NLLAGLTGSEMPSEL 325 |
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UNIPROTKB|F1NX57 GRHPR "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Score = 577 (208.2 bits), Expect = 5.0e-60, Sum P(2) = 5.0e-60 Identities = 122/256 (47%), Positives = 160/256 (62%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 +LKVI+T SVG+DHL L EIK RGIRVG + +D AE ++ L +A RR E + Sbjct: 91 SLKVISTMSVGFDHLALDEIKKRGIRVGYTPDVLTDATAELSVALLLATCRRLPEAVSEV 150 Query: 935 TSGEWAL-KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 +G W K + G GL G+TVGI+GLG IG A+ LK F V LYT R + E Sbjct: 151 KTGGWTTWKPLWMCG---YGLSGSTVGIIGLGRIGQAVARRLKPFGVKNFLYTGSRPRPE 207 Query: 994 GTA-LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 A A+ VPL L ESDF+ VTCALT DT+ + + FS MK T++ +NTSRG +++ Sbjct: 208 NAAEFQAEFVPLTKLAQESDFVVVTCALTPDTQGMCNKDFFSRMKKTSVFINTSRGAVVN 267 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 QE L + L +I AGLDV PEPLP DHPL++L NCV+ PH SAT A R + +A Sbjct: 268 QEDLYDALVGGQIAAAGLDVTTPEPLPTDHPLLKLRNCVILPHIGSATYATRSTMAVLAA 327 Query: 1113 ENIIRGYKGEPMIYEL 1128 +N++ G +GEPM +EL Sbjct: 328 DNLLAGLRGEPMPHEL 343 |
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FB|FBgn0037370 CG1236 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
---|
Score = 527 (190.6 bits), Expect = 6.3e-57, Sum P(2) = 6.3e-57 Identities = 111/255 (43%), Positives = 156/255 (61%) Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935 LK + T SVGYDH+++ E + RGIRVG + +D AE + L +A +RR E K + Sbjct: 109 LKCVATISVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALLLATNRRLFEANKQVY 168 Query: 936 SGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-EE 993 +G W + + G GLKG+ VG++G G IG E A + FK ++I YT+R ++ +E Sbjct: 169 NGGWKSWAPMWMCG---QGLKGSRVGLLGFGRIGQEIAARIVPFKPTEITYTTRSLRPKE 225 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 A+ A+ V D + ESD I V CALT +T+++ F MKP IL+NT+RGG++DQ Sbjct: 226 AAAVNARHVDFDEMLRESDLIVVCCALTPETKEIFNATAFQKMKPNCILINTARGGVVDQ 285 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 +AL E LK K+I AGLDV PEPLP D PL++LDN V+ PH SA R E S +A Sbjct: 286 KALYEALKTKRILAAGLDVTTPEPLPIDDPLLKLDNVVILPHIGSADIETRKEMSRITAR 345 Query: 1114 NIIRGYKGEPMIYEL 1128 NI+ G+ M+ E+ Sbjct: 346 NILAALAGDKMVAEV 360 |
|
ZFIN|ZDB-GENE-040426-1847 grhprb "glyoxylate reductase/hydroxypyruvate reductase b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
---|
Score = 516 (186.7 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55 Identities = 118/266 (44%), Positives = 154/266 (57%) Query: 875 NLKVITTFSVGYDHLELHEIK----------ARGIRVGSVGHISSDTVAEYNIGLAIAVS 924 NLKV++T SVGYDHL L E+K RGIRVG + +D VAE + L +A S Sbjct: 97 NLKVLSTMSVGYDHLSLEELKKSLLIWACIFCRGIRVGYTPEVLTDAVAELTVALLLATS 156 Query: 925 RRFQEGRKCITSGEWALKQTH-IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKI 983 RR E +G W +T + G L +TVGI+GLG IG+ A+ LK FKV K Sbjct: 157 RRLIEATHEAKTGGWGTWRTMWLCGHE---LANSTVGILGLGRIGVAIAERLKPFKVKKF 213 Query: 984 LYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 1042 +YT + E + A+ V LD L +SDF+ + CALT +T + FS MK AI Sbjct: 214 IYTDVEPRTELANMINAEYVSLDELAKQSDFLAICCALTPETHGICNWNLFSKMKKNAIF 273 Query: 1043 VNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKA 1102 +NTSRGG+++QE L E L I GAGLDV PEPLP HPL L NCV+ PH +SA+ Sbjct: 274 INTSRGGVVNQEDLYEALSTGLIAGAGLDVTTPEPLPTHHPLYTLKNCVILPHIASASYT 333 Query: 1103 VRDEKSSTSAENIIRGYKGEPMIYEL 1128 R+ S+ +A N++ G +GE M EL Sbjct: 334 TRNAMSALAANNLLAGLRGEAMPKEL 359 |
|
UNIPROTKB|Q9UBQ7 GRHPR "Glyoxylate reductase/hydroxypyruvate reductase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
---|
Score = 534 (193.0 bits), Expect = 2.6e-54, Sum P(2) = 2.6e-54 Identities = 118/256 (46%), Positives = 153/256 (59%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG DHL L EIK RGIRVG + +DT AE + L + RR E + + Sbjct: 74 NLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEV 133 Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-E 992 +G W + K + G GL +TVGI+GLG IG A+ LK F V + LYT R+ + E Sbjct: 134 KNGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 190 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 E A+ V L A+SDFI V C+LT TE L + F MK TA+ +N SRG +++ Sbjct: 191 EAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVN 250 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 Q+ L + L KI AGLDV PEPLP +HPL+ L NCV+ PH SAT R+ S +A Sbjct: 251 QDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAA 310 Query: 1113 ENIIRGYKGEPMIYEL 1128 N++ G +GEPM EL Sbjct: 311 NNLLAGLRGEPMPSEL 326 |
|
UNIPROTKB|F1ST73 GRHPR "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
---|
Score = 441 (160.3 bits), Expect = 1.9e-53, Sum P(2) = 1.9e-53 Identities = 107/257 (41%), Positives = 141/257 (54%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG DHL L EIK RG G + + + +S+ Sbjct: 75 NLKVISTMSVGVDHLALDEIKKRGFSSG-FKRVLPAACPPCQVVVGWGLSQGLSPALLSP 133 Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-E 992 SG W + K + G GL +TVGIVGLG IG A+ LK F V + LYT + + + Sbjct: 134 CSGGWTSWKPLWMCG---YGLTESTVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQ 190 Query: 993 EGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 E A+ P TL AESDFI V C+LT T L + + MK TA+ +N SRG ++ Sbjct: 191 EAAEFQAEFGAPPCTLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVV 250 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 +Q+ L + L +I AGLDV PEPLP +HPL+ L NCV+ PH SAT R+ S + Sbjct: 251 NQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRTRNTMSVLA 310 Query: 1112 AENIIRGYKGEPMIYEL 1128 A N++ G +GEPM EL Sbjct: 311 ANNLLAGLRGEPMPSEL 327 |
|
UNIPROTKB|F1PJS0 GRHPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
---|
Score = 523 (189.2 bits), Expect = 1.0e-52, Sum P(2) = 1.0e-52 Identities = 115/256 (44%), Positives = 152/256 (59%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG DHL L EIK RGIRVG + +D AE + L + RR E + + Sbjct: 74 NLKVISTMSVGVDHLALEEIKKRGIRVGYTPDVLTDATAELAMSLLLTTCRRLPEAIEEV 133 Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-E 992 +G W + K + G GL +TVGI+GLG IG A+ LK F + + LYT R+ + + Sbjct: 134 RNGGWTSWKPLWMCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGIQRFLYTGRQPRPQ 190 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 E A+ V L AESDFI V C+LT T+ L + F MK TA+ +N SRG +++ Sbjct: 191 EAAEFQAEFVSTPKLAAESDFIIVACSLTPATKGLCNKDFFQQMKTTAVFINISRGDVVN 250 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 Q+ L E L +I AGLDV PEPLP +HPL+ L NCV+ PH SAT R+ S +A Sbjct: 251 QDDLYEALASGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYGTRNTMSLLAA 310 Query: 1113 ENIIRGYKGEPMIYEL 1128 N++ G +GEPM EL Sbjct: 311 NNLLAGLRGEPMPSEL 326 |
|
FB|FBgn0051674 CG31674 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
---|
Score = 490 (177.5 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50 Identities = 105/253 (41%), Positives = 159/253 (62%) Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935 LK ++T S G +++++ E+K RGI +GS + + VA+ +GL IA +RRFQEGR+ I Sbjct: 74 LKAVSTMSSGINNVDVPELKKRGIPLGSTPAMLTVAVADLTVGLLIAAARRFQEGRRKID 133 Query: 936 SGEWALKQTH-IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR-RVKEE 993 S +W + ++G +I + +TVG G G IG AK L F + ++LYT+R RV ++ Sbjct: 134 SDKWDKDHLNWMLGQDI---RDSTVGFYGFGGIGQAVAKRLMGFDIKRVLYTTRNRVSQD 190 Query: 994 -GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 A+ V +TL AESDF+ + LTK+T L F+ MK TA+LVN RG +++ Sbjct: 191 IEERFNAKKVDFETLLAESDFLIIASPLTKETLGLFNATVFNKMKETAVLVNVGRGKIVN 250 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 Q+ L E LK +I AGLDVM PEPLP++ L+ LDN V+TPH AT+ R + ++ ++ Sbjct: 251 QDDLYEALKSNRIFAAGLDVMDPEPLPSNDKLLTLDNVVVTPHVGYATRRTRVDAANLAS 310 Query: 1113 ENIIRGYKGEPMI 1125 N+++G GEPM+ Sbjct: 311 RNVLKGLAGEPML 323 |
|
UNIPROTKB|F1MB84 GRHPR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
---|
Score = 524 (189.5 bits), Expect = 2.7e-49, P = 2.7e-49 Identities = 118/256 (46%), Positives = 152/256 (59%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLKVI+T SVG DHL L EIK RGIRVG + +D AE + L + RR E + + Sbjct: 74 NLKVISTMSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEV 133 Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-E 992 +G W + K + G GL +TVGIVGLG IG A+ LK F V + LYT R+ + + Sbjct: 134 KNGGWTSWKPLWMCGH---GLSQSTVGIVGLGRIGQAIARRLKPFGVRRFLYTGRQPRPQ 190 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 E A+ V L AESDFI V C+LT T L + F MK TA+ VN SRG ++D Sbjct: 191 EAAEFQAEFVSTPKLAAESDFIVVACSLTPATRGLCNKDFFQWMKKTAVFVNISRGEVVD 250 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 Q+ L + L +I AGLDV PEPLP +HPL+ L NCV+ PH SAT R+ S +A Sbjct: 251 QDDLYQALASGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATHRTRNIMSVLAA 310 Query: 1113 ENIIRGYKGEPMIYEL 1128 +N++ G +GEPM EL Sbjct: 311 DNLLAGLRGEPMPSEL 326 |
|
MGI|MGI:1923488 Grhpr "glyoxylate reductase/hydroxypyruvate reductase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
---|
Score = 522 (188.8 bits), Expect = 4.5e-49, P = 4.5e-49 Identities = 117/256 (45%), Positives = 152/256 (59%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NL+VI+T SVG DHL L EIK RGIRVG + +D AE + L + RR E + + Sbjct: 74 NLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEV 133 Query: 935 TSGEWAL-KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-E 992 +G W+ + G GL +TVGIVGLG IG A+ LK F V + LYT R+ + + Sbjct: 134 KNGGWSSWSPLWMCG---YGLSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQ 190 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 E A+ VP+ L AESDFI V+C+LT DT L + F MK TAI +N SRG +++ Sbjct: 191 EAAEFQAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVN 250 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 QE L + L +I AGLDV PEPLP HPL+ L NCV+ PH SAT R+ S +A Sbjct: 251 QEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMSLLAA 310 Query: 1113 ENIIRGYKGEPMIYEL 1128 N++ G +GE M EL Sbjct: 311 NNLLAGLRGEAMPSEL 326 |
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
Query | 1128 | |||
cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 4e-98 | |
cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 6e-81 | |
COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 3e-79 | |
cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 5e-78 | |
cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 1e-76 | |
COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 1e-73 | |
cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 8e-72 | |
cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 1e-69 | |
cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 2e-68 | |
pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 1e-67 | |
cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 2e-63 | |
cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 5e-63 | |
cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 1e-61 | |
cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 5e-61 | |
PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 4e-60 | |
cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 2e-59 | |
cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 4e-58 | |
cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 9e-58 | |
pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 4e-56 | |
cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 1e-55 | |
cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 4e-55 | |
cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 3e-52 | |
PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 2e-51 | |
cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 4e-51 | |
PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 8e-51 | |
cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 8e-51 | |
cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 7e-50 | |
TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 6e-49 | |
cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 6e-47 | |
cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 3e-45 | |
cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 2e-44 | |
cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 4e-44 | |
cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 1e-43 | |
cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 7e-43 | |
PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 3e-42 | |
cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 1e-41 | |
pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 1e-40 | |
cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 5e-40 | |
cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 8e-40 | |
PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 9e-40 | |
cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 2e-39 | |
cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 2e-39 | |
cd12163 | 334 | cd12163, 2-Hacid_dh_5, Putative D-isomer specific | 8e-39 | |
PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 9e-39 | |
PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 1e-38 | |
cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 3e-38 | |
cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 3e-37 | |
cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 9e-37 | |
cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 1e-36 | |
cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 7e-36 | |
cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 9e-36 | |
cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 2e-35 | |
cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 3e-34 | |
COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 3e-34 | |
cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 1e-33 | |
PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 8e-33 | |
COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 1e-32 | |
cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 1e-32 | |
PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 4e-32 | |
cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 2e-31 | |
COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 5e-31 | |
cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 7e-31 | |
PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 8e-31 | |
cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 2e-30 | |
cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 5e-30 | |
PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 1e-29 | |
cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 2e-29 | |
cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 3e-29 | |
cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 9e-29 | |
cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 9e-29 | |
cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 3e-28 | |
pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 5e-28 | |
cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 6e-28 | |
cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 2e-27 | |
cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 1e-26 | |
cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 2e-26 | |
cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 2e-26 | |
cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 4e-26 | |
PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 2e-25 | |
PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 2e-25 | |
cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 4e-25 | |
PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 7e-25 | |
PRK11790 | 409 | PRK11790, PRK11790, D-3-phosphoglycerate dehydroge | 1e-24 | |
cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 2e-24 | |
cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 3e-24 | |
cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 1e-23 | |
cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 3e-23 | |
TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 5e-23 | |
cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 6e-23 | |
cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 1e-22 | |
cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 2e-22 | |
cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 3e-22 | |
COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 2e-21 | |
PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 2e-21 | |
PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 3e-21 | |
PRK06436 | 303 | PRK06436, PRK06436, glycerate dehydrogenase; Provi | 3e-21 | |
pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 4e-21 | |
cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 8e-21 | |
PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 1e-19 | |
cd12163 | 334 | cd12163, 2-Hacid_dh_5, Putative D-isomer specific | 3e-19 | |
PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 4e-19 | |
COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 9e-19 | |
cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 1e-18 | |
cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 1e-18 | |
cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 2e-18 | |
cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 2e-18 | |
cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 3e-18 | |
cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 7e-18 | |
cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 9e-18 | |
cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 1e-17 | |
cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 2e-17 | |
cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 3e-17 | |
cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 3e-17 | |
cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 1e-16 | |
cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 1e-16 | |
cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 2e-16 | |
cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 4e-16 | |
cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 5e-16 | |
cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 7e-16 | |
cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 8e-16 | |
cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 8e-16 | |
PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 2e-15 | |
PRK11790 | 409 | PRK11790, PRK11790, D-3-phosphoglycerate dehydroge | 4e-15 | |
PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 6e-15 | |
cd12154 | 310 | cd12154, FDH_GDH_like, Formate/glycerate dehydroge | 6e-15 | |
cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 1e-14 | |
cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 2e-14 | |
cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 2e-14 | |
cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 2e-14 | |
PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 3e-14 | |
cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 4e-14 | |
pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 5e-14 | |
cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 6e-14 | |
cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 6e-14 | |
cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 9e-14 | |
cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 1e-13 | |
pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 2e-13 | |
cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 7e-13 | |
PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 1e-12 | |
cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 2e-12 | |
cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 2e-12 | |
cd12170 | 294 | cd12170, 2-Hacid_dh_9, Putative D-isomer specific | 2e-12 | |
cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 4e-12 | |
COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 1e-11 | |
PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 1e-11 | |
PRK08605 | 332 | PRK08605, PRK08605, D-lactate dehydrogenase; Valid | 1e-11 | |
PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 2e-11 | |
cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 4e-11 | |
cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 6e-11 | |
cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 6e-11 | |
PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 1e-10 | |
cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 2e-10 | |
PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 2e-10 | |
cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 2e-10 | |
TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 3e-10 | |
cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 4e-10 | |
PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 5e-10 | |
cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 5e-10 | |
PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 5e-10 | |
PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 6e-10 | |
PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 2e-09 | |
cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 2e-09 | |
cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 2e-09 | |
cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 2e-09 | |
cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 3e-09 | |
PRK15438 | 378 | PRK15438, PRK15438, erythronate-4-phosphate dehydr | 3e-09 | |
cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 4e-09 | |
cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 4e-09 | |
cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 5e-09 | |
cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 1e-08 | |
PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 1e-08 | |
PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 1e-08 | |
cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 2e-08 | |
cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 2e-08 | |
PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 3e-08 | |
PRK06436 | 303 | PRK06436, PRK06436, glycerate dehydrogenase; Provi | 4e-08 | |
PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 9e-08 | |
PRK15469 | 312 | PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr | 9e-08 | |
cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 1e-07 | |
pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 1e-07 | |
cd12163 | 334 | cd12163, 2-Hacid_dh_5, Putative D-isomer specific | 1e-07 | |
cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 1e-07 | |
cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 2e-07 | |
COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 4e-07 | |
cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 1e-06 | |
PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 1e-06 | |
cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 2e-06 | |
cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 3e-06 | |
cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 4e-06 | |
cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 7e-06 | |
cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 9e-06 | |
cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 1e-05 | |
cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 1e-05 | |
COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 2e-05 | |
cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 2e-05 | |
cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 2e-05 | |
cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 2e-05 | |
cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 2e-05 | |
TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 2e-05 | |
cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 3e-05 | |
cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 3e-05 | |
cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 4e-05 | |
cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 4e-05 | |
cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 5e-05 | |
PRK06436 | 303 | PRK06436, PRK06436, glycerate dehydrogenase; Provi | 8e-05 | |
cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 9e-05 | |
cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 1e-04 | |
PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 1e-04 | |
cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 1e-04 | |
cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 1e-04 | |
cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 1e-04 | |
cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 1e-04 | |
cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 1e-04 | |
cd12154 | 310 | cd12154, FDH_GDH_like, Formate/glycerate dehydroge | 1e-04 | |
cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 3e-04 | |
cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 3e-04 | |
PRK08605 | 332 | PRK08605, PRK08605, D-lactate dehydrogenase; Valid | 3e-04 | |
PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 4e-04 | |
PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 4e-04 | |
PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 6e-04 | |
cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 6e-04 | |
PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 6e-04 | |
cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 7e-04 | |
PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 0.001 | |
cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 0.001 | |
cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 0.001 | |
cd12154 | 310 | cd12154, FDH_GDH_like, Formate/glycerate dehydroge | 0.001 | |
PRK15438 | 378 | PRK15438, PRK15438, erythronate-4-phosphate dehydr | 0.001 | |
PRK15469 | 312 | PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr | 0.001 | |
cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 0.002 | |
cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 0.002 | |
cd12170 | 294 | cd12170, 2-Hacid_dh_9, Putative D-isomer specific | 0.002 | |
smart01002 | 149 | smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT | 0.002 | |
cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 0.003 | |
TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 0.003 | |
PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 0.003 | |
PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 0.003 | |
PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 0.003 | |
PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 0.004 | |
cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 0.004 | |
cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 0.004 |
>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
---|
Score = 313 bits (805), Expect = 4e-98 Identities = 118/249 (47%), Positives = 157/249 (63%), Gaps = 6/249 (2%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 LKVI +SVGYDH+++ KARGI V + + +D A+ L +A +RR EG + + Sbjct: 65 PLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARRVVEGDRFV 124 Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR-RVKE 992 +GEW T ++G L G T+GIVG+G IG A+ K F + KILY +R R E Sbjct: 125 RAGEWKGWSPTLLLG---TDLHGKTLGIVGMGRIGQAVARRAKGFGM-KILYHNRSRKPE 180 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 LGA+ V LD L AESDF+ + C LT +T LI ++ +LMKPTAIL+NT+RGG++D Sbjct: 181 AEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVD 240 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 ++ALVE LK KI GAGLDV PEPLPADHPL+ L N VL PH SAT R + +A Sbjct: 241 EDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAMAELAA 300 Query: 1113 ENIIRGYKG 1121 +N++ G Sbjct: 301 DNLLAVLAG 309 |
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
---|
Score = 266 bits (682), Expect = 6e-81 Identities = 105/251 (41%), Positives = 147/251 (58%), Gaps = 6/251 (2%) Query: 868 KTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRF 927 + + LK I G D+++L K RGI V +V +++ VAE+ +GL +A+ RR Sbjct: 56 EVLAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRL 115 Query: 928 QEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 987 + G L L+G TVGIVGLG IG AK L+AF + K+LY Sbjct: 116 PRADAAVRRGWGWLWAGFPGY----ELEGKTVGIVGLGRIGQRVAKRLQAFGM-KVLYYD 170 Query: 988 RRVKEEGTA-LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTS 1046 R K E LG ++V LD L A+SD + + LT +T LI ++ +LMKP A+LVNT+ Sbjct: 171 RTRKPEPEEDLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTA 230 Query: 1047 RGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 RGGL+D++AL+ LK KI GA LDV PEPLPADHPL++L N +LTPH + T+ R+ Sbjct: 231 RGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARER 290 Query: 1107 KSSTSAENIIR 1117 + + EN+ R Sbjct: 291 MAEIAVENLER 301 |
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
---|
Score = 262 bits (672), Expect = 3e-79 Identities = 112/259 (43%), Positives = 158/259 (61%), Gaps = 10/259 (3%) Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930 ++ LK+I T S GYD+++L K RGI V +V S++ VAE+ + L +A++RR EG Sbjct: 62 EKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEG 121 Query: 931 RKCITSGEWAL--KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 + + G W+L ++G ++ G T+GI+GLG IG A+ LK F + K+LY R Sbjct: 122 DRRVREGNWSLSGGPDPLLGFDLRGK---TLGIIGLGRIGQAVARRLKGFGM-KVLYYDR 177 Query: 989 -RVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 E LGA+ V LD L AESD I + C LT +T LI ++ + MKP AILVNT+R Sbjct: 178 SPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTAR 237 Query: 1048 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC---VLTPHTSSATKAVR 1104 GGL+D++AL++ LK KI GAGLDV EP DHPL++LDN VLTPH +SAT+ R Sbjct: 238 GGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEAR 297 Query: 1105 DEKSSTSAENIIRGYKGEP 1123 + + EN+ + G Sbjct: 298 KAMAELALENLEAFFDGGV 316 |
Length = 324 |
>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 258 bits (662), Expect = 5e-78 Identities = 104/252 (41%), Positives = 148/252 (58%), Gaps = 7/252 (2%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 L++I VG D ++L ARGI V ++ ++++VAE+ + L +A+ RR E + Sbjct: 64 PRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPEADRE 123 Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-- 991 + +G W + G L G TVGIVGLGNIG A+ L+ F V +++Y R Sbjct: 124 LRAGRWGRPE----GRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV-EVIYYDRFRDPE 178 Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 E LG + V LD L AESD + + LT +T LIG ++ + MKP AIL+NT+RGGL+ Sbjct: 179 AEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARGGLV 238 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 D+EAL+ L+ + GAGLDV EPLP D PL++LDN +LTPH + T ++ Sbjct: 239 DEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMAAIV 298 Query: 1112 AENIIRGYKGEP 1123 AENI R +GEP Sbjct: 299 AENIARLLRGEP 310 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 254 bits (652), Expect = 1e-76 Identities = 99/249 (39%), Positives = 143/249 (57%), Gaps = 11/249 (4%) Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930 LKVI+ + VGYD+++L K RGI V + +S++VAE IGL +A++R+ + Sbjct: 64 AAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQA 123 Query: 931 RKCITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 + + +G W +G L G T+GI+GLG IG A+ L F + + Y Sbjct: 124 DREVRAGGW---------DRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPY 174 Query: 989 RVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 +E G + V L+ L ESDFI + LT +T LI + +LMKP AIL+NT+RG Sbjct: 175 PDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARG 234 Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKS 1108 GL+D+EAL E LK +I GA LDV EP PAD PL++L N +LTPH ++TK Sbjct: 235 GLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRMG 294 Query: 1109 STSAENIIR 1117 + +A+N+I Sbjct: 295 TMAAQNVID 303 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
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Score = 247 bits (632), Expect = 1e-73 Identities = 105/283 (37%), Positives = 144/283 (50%), Gaps = 8/283 (2%) Query: 844 GLETAKLLKAFKVSKILYTSRNKVK--TPKRTENLKVITTFSVGYDHLELHEIKARGIRV 901 L+ +LL+A + L S V NLK I G D+++L RGI V Sbjct: 33 DLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILV 92 Query: 902 GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGI 961 + ++ +VAE + L +A++RR + GEW K L G TVGI Sbjct: 93 VNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTE-----LAGKTVGI 147 Query: 962 VGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVP-LDTLCAESDFIFVTCAL 1020 +GLG IG AK LKAF + I Y +E G V LD L AE+D + + L Sbjct: 148 IGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPL 207 Query: 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA 1080 T +T LI ++ + MKP AIL+N +RGG++D++AL+ L KI GA LDV EPLPA Sbjct: 208 TPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPA 267 Query: 1081 DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 D PL L N +LTPH +T ++ + AENI+R G P Sbjct: 268 DSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGP 310 |
Length = 324 |
>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
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Score = 241 bits (618), Expect = 8e-72 Identities = 95/251 (37%), Positives = 142/251 (56%), Gaps = 6/251 (2%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 LKVI + VG D++++ RGI V +V ++ VA++ + L +A++R+ + Sbjct: 64 PRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRA 123 Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 + +G W +G I L+G T+G+VG G IG AK KAF +++ V + Sbjct: 124 VRAGGWDWT----VGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGF-RVIAYDPYVPDG 178 Query: 994 GTAL-GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 AL G ++V LD L A SD + + C LT +T LI + +LMKP A LVNT+RGGL+D Sbjct: 179 VAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVD 238 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 + AL LK +I GA LDV+ EP PAD PL+ N +LTPH + ++ E +A Sbjct: 239 EAALARALKSGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESLAELRRKAA 298 Query: 1113 ENIIRGYKGEP 1123 E ++R +GEP Sbjct: 299 EEVVRVLRGEP 309 |
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 235 bits (601), Expect = 1e-69 Identities = 100/252 (39%), Positives = 148/252 (58%), Gaps = 11/252 (4%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 LKVI VG D++++ ARGI V + ++ +VAE+ I L +A++R + Sbjct: 61 PRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQADAS 120 Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 + +G+W K+ MG L+G T+GIVGLG IG E A+ +AF + K+L + Sbjct: 121 LRAGKWDRKKF-------MGVELRGKTLGIVGLGRIGREVARRARAFGM-KVLAYDPYIS 172 Query: 992 EEG-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 E A G +LV LD L AE+DFI + LT +T LI ++ + MKP AIL+NT+RGG+ Sbjct: 173 AERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGI 232 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 +D+ AL + LK KI GA LDV EP PAD PL+ L N +LTPH ++T+ ++ + Sbjct: 233 VDEAALADALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAVD 292 Query: 1111 SAENIIRGYKGE 1122 +AE ++ GE Sbjct: 293 AAEQVLAVLAGE 304 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 232 bits (593), Expect = 2e-68 Identities = 104/293 (35%), Positives = 154/293 (52%), Gaps = 24/293 (8%) Query: 827 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGY 886 + LK A + I + T K+++A LK+I G Sbjct: 41 LEALKDADILITHFAPV---TKKVIEAAP-------------------KLKLIGVCRGGP 78 Query: 887 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 946 +++++ RGI V + +++ VAE+ +GL +A +R + GEW K + Sbjct: 79 ENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEW-RKDYYN 137 Query: 947 IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDT 1006 L+G TVGIVG G IG AK LKAF ++Y E+ A G + V L+ Sbjct: 138 YDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEADGVKKVSLEE 197 Query: 1007 LCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 L SD + + LT +T +IG ++F+LMKPTA +NT+R GL+D++AL+E L++ KIG Sbjct: 198 LLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIG 257 Query: 1067 GAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGY 1119 GA LDV EPLPADHPL++LDN LTPH + AT+ V E+S ++ Y Sbjct: 258 GAALDVFPEEPLPADHPLLKLDNVTLTPHIAGATRDV-AERSPEIIAEELKRY 309 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
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Score = 224 bits (573), Expect = 1e-67 Identities = 83/181 (45%), Positives = 113/181 (62%), Gaps = 6/181 (3%) Query: 917 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLK 976 + L +A++RR E + + +G W L G TVGI+GLG IG A+ LK Sbjct: 1 LALLLALARRIPEADRQVRAGRWRPDALLGRE-----LSGKTVGIIGLGRIGRAVARRLK 55 Query: 977 AFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 AF + K++ R K E ALGA+ V LD L AESD + + LT +T LI ++ +LM Sbjct: 56 AFGM-KVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALM 114 Query: 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHT 1096 KP AIL+NT+RGGL+D++AL+ LK +I GA LDV PEPLP DHPL++L N +LTPH Sbjct: 115 KPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHI 174 Query: 1097 S 1097 + Sbjct: 175 A 175 |
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 217 bits (556), Expect = 2e-63 Identities = 96/257 (37%), Positives = 146/257 (56%), Gaps = 10/257 (3%) Query: 865 NKV----KTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLA 920 NKV + + NLK+I + GY++++L K RGI V +V S+D+VA++ L Sbjct: 51 NKVVLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALL 110 Query: 921 IAVSRRFQEGRKCITSGEWALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFK 979 +A++R + +GEW I+ L G T+GI+G GNIG A++ +AF Sbjct: 111 LALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARIARAFG 170 Query: 980 VSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPT 1039 + K+L+ R+ L V LD L A+SD I + C LT +T LI ++ + MKP Sbjct: 171 M-KVLFAERKGAPP---LREGYVSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPG 226 Query: 1040 AILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQ-LDNCVLTPHTSS 1098 AIL+NT+RGGL+D++AL + L KI GAGLDV+ EP AD+PL++ N ++TPH + Sbjct: 227 AILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPRADNPLLKAAPNLIITPHIAW 286 Query: 1099 ATKAVRDEKSSTSAENI 1115 A++ R +NI Sbjct: 287 ASREARQRLMDILVDNI 303 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
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Score = 216 bits (553), Expect = 5e-63 Identities = 108/252 (42%), Positives = 151/252 (59%), Gaps = 10/252 (3%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 +NLK+I+ G DH++L K RGI V + S++ VAE IGLAI + R Sbjct: 68 KNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAA 127 Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 + +G + +IG L G TVGIVG G IGL A+L KAF K+L SR KEE Sbjct: 128 VRAGG---TKAGLIGRE---LAGKTVGIVGTGAIGLRVARLFKAFG-CKVLAYSRSEKEE 180 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 ALG + V LD L AESD + + L +T+ LIG+++ +LMK +AIL+NT+RG ++D Sbjct: 181 AKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDN 240 Query: 1054 EALVEFLKDKKIGGAGLDV--MIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 EAL + L + KI GAG+DV M P PLPAD+PL+ N +LTPH + AT+ ++++ Sbjct: 241 EALADALNEGKIAGAGIDVFDMEP-PLPADYPLLHAPNTILTPHVAFATEEAMEKRAEIV 299 Query: 1112 AENIIRGYKGEP 1123 +NI G+P Sbjct: 300 FDNIEAWLAGKP 311 |
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
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Score = 212 bits (542), Expect = 1e-61 Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 11/272 (4%) Query: 859 ILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIG 918 +L + + L+ I + S G D L E+ R + + + I +AEY +G Sbjct: 43 VLLGNPPLPELLPAAPRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLG 102 Query: 919 LAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 978 +A +R+ + W ++ + L G TV IVGLG+IG E A+ KAF Sbjct: 103 YMLAFARKLPRYARNQAERRW--QRRGPVRE----LAGKTVLIVGLGDIGREIARRAKAF 156 Query: 979 KVSKILYTSRRVKEEGTALGAQLVP---LDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 + +++ R + + ++ LD L E+D++ LT +T L ++F+ Sbjct: 157 GM-RVIGVRRSGRPAPPVVD-EVYTPDELDELLPEADYVVNALPLTPETRGLFNAERFAA 214 Query: 1036 MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPH 1095 MKP A+L+N RG ++D++AL+E L+ +I GA LDV EPLPAD PL L N ++TPH Sbjct: 215 MKPGAVLINVGRGSVVDEDALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPH 274 Query: 1096 TSSATKAVRDEKSSTSAENIIRGYKGEPMIYE 1127 S + + + EN+ R GEP++ Sbjct: 275 ISGDSPSYPERVVEIFLENLRRYLAGEPLLNV 306 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 210 bits (538), Expect = 5e-61 Identities = 103/257 (40%), Positives = 144/257 (56%), Gaps = 12/257 (4%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG-RKC 933 NLK+I + G+D++++ K +GI V + +S++ AE GL +A++RR EG R Sbjct: 65 NLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLM 124 Query: 934 ITSG--EWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 G WA +G L G T+GI+G+G IG A+ KAF + KILY +R Sbjct: 125 RRGGFLGWAP--LFFLGHE---LAGKTLGIIGMGRIGQAVARRAKAFGM-KILYYNRHRL 178 Query: 992 EEGT--ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 E T LGA V LD L ESDF+ + T +T LI F LMKPTA L+N +RG Sbjct: 179 SEETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGP 238 Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109 L+D++ALV+ LK +I GA LDV EP + L +LDN +LTPH +AT RD + Sbjct: 239 LVDEKALVDALKTGEIAGAALDVFEFEPEVSPE-LKKLDNVILTPHIGNATVEARDAMAK 297 Query: 1110 TSAENIIRGYKGEPMIY 1126 +A+NII +G+ Sbjct: 298 EAADNIISFLEGKRPKN 314 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
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Score = 209 bits (533), Expect = 4e-60 Identities = 100/254 (39%), Positives = 145/254 (57%), Gaps = 11/254 (4%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 L+++ ++VGYD++++ E RGI V + + ++ A++ L +A +RR E + Sbjct: 67 RLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFV 126 Query: 935 TSGEWALKQT--HIIGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 SGEW + H P + + G T+GI+G G IG A+ K F + +ILY SR Sbjct: 127 RSGEWKRRGVAWH---PLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRT 182 Query: 990 VKEEG-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 K E LGA+ PL+ L ESDF+ + LTK+T +I ++ LMKPTAILVNT+RG Sbjct: 183 RKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARG 242 Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKS 1108 ++D +ALV+ LK+ I GAGLDV EP + L L N VL PH SAT R+ + Sbjct: 243 KVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMA 301 Query: 1109 STSAENIIRGYKGE 1122 AEN+I +GE Sbjct: 302 ELVAENLIAFKRGE 315 |
Length = 333 |
>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 206 bits (527), Expect = 2e-59 Identities = 98/251 (39%), Positives = 139/251 (55%), Gaps = 9/251 (3%) Query: 873 TENLKVITTFSVGYDHLELHEIKARGIRVGSV-GHISSDTVAEYNIGLAIAVSRRFQEGR 931 + LK+I +GYD+++L G+ V V G + D VAE+ + L + V R+ + Sbjct: 67 NDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQAS 126 Query: 932 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 + + G+W + + L G TVGI+G GNIG A++LK +K+L V Sbjct: 127 EAVKEGKWTERANFVGHE----LSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYVS 182 Query: 992 EEG-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 EE GA+ V L+ L AESD I + LT++T +I K FS MK ILVNT+RG L Sbjct: 183 EEVIKKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARGEL 242 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATK---AVRDEK 1107 +D+EAL+E LK KI GAGLDV+ EP+ ADHPL+ +N V+TPH + T EK Sbjct: 243 IDEEALIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENVVITPHIGAYTYESLYGMGEK 302 Query: 1108 SSTSAENIIRG 1118 E+ + G Sbjct: 303 VVDDIEDFLAG 313 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 202 bits (516), Expect = 4e-58 Identities = 92/245 (37%), Positives = 140/245 (57%), Gaps = 12/245 (4%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 NLK+I VG D++++ K +GI+V + SS++VAE IGL ++++R + + Sbjct: 63 NLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREM 122 Query: 935 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992 G+W K+ G L+G T+GI+G G IG E AK+ +A + ++ K+ Sbjct: 123 KLGKWNKKK-------YKGIELRGKTLGIIGFGRIGREVAKIARALGM-NVIAYDPYPKD 174 Query: 993 EGTA-LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 E LG + V L+ L SDFI + LT +T+ +I +K+ LMK AI++NTSRGG++ Sbjct: 175 EQAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVI 234 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 D+EAL+E LK K+ GA LDV EP P L++L N LTPH ++TK ++ Sbjct: 235 DEEALLEALKSGKLAGAALDVFENEPPPG-SKLLELPNVSLTPHIGASTKEAQERIGEEL 293 Query: 1112 AENII 1116 A II Sbjct: 294 ANKII 298 |
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 201 bits (514), Expect = 9e-58 Identities = 93/263 (35%), Positives = 138/263 (52%), Gaps = 12/263 (4%) Query: 872 RTENLKVITTFSVGYDHLELHEIKARGIRV-GSVGHISSDTVAEYNIGLAIAVSRRFQEG 930 + LK+I S G DHL L + G+ V + G+ S VAE+ + L +A+++R E Sbjct: 57 ALKRLKLIQVPSAGVDHLPLERLPE-GVVVANNHGN--SPAVAEHALALILALAKRIVEY 113 Query: 931 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990 + G W P L+G TVGI+G G+IG E A+LLKAF + I + Sbjct: 114 DNDLRRGIW--HGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPK 171 Query: 991 KEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 ++EG L LD ++D + V LTK T LIG + + MKP AILVN RG + Sbjct: 172 EDEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPV 231 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEP------LPADHPLVQLDNCVLTPHTSSATKAVR 1104 +D+EAL E LK++ I GA +DV P P+ +P +L N +++PH + T+ Sbjct: 232 VDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEETF 291 Query: 1105 DEKSSTSAENIIRGYKGEPMIYE 1127 + +AENI R +GEP++ Sbjct: 292 RRRIDEAAENIRRYLRGEPLLNL 314 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
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Score = 197 bits (502), Expect = 4e-56 Identities = 86/288 (29%), Positives = 135/288 (46%), Gaps = 12/288 (4%) Query: 846 ETAKLLKAFKVSKILYTSRNKVKTP--KRTENLKVITTFSVGYDHLELHEIKARGIRVGS 903 E + K ++ S V + LKVI VG D+++L RGI V + Sbjct: 31 ELLEAAKDADA--LIVRSTTPVTAEVLEAAPGLKVIARRGVGVDNIDLDAATERGILVTN 88 Query: 904 VGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVG 963 V S+++VAE +GL +A++RR E + +G+W GP + L G T+G++G Sbjct: 89 VPGYSTESVAELTVGLILALARRIPEADASVRAGDWKKG-----GPIGLELYGKTLGVIG 143 Query: 964 LGNIGLETAKLLKAFK---VSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCAL 1020 G IG A + KA V+ Y + EEG L L ESD + Sbjct: 144 GGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPP 203 Query: 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA 1080 T I + M A+ +N +RGG + +EA ++ L ++ I A LDV+ EP P Sbjct: 204 TTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPV 263 Query: 1081 DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 + PL+ L N +LTPH + AT+ ++ + +AEN++ KG + Sbjct: 264 NSPLLDLPNVILTPHIAGATEEAQENMAEEAAENLLAFLKGGTPPNAV 311 |
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
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Score = 194 bits (497), Expect = 1e-55 Identities = 88/238 (36%), Positives = 125/238 (52%), Gaps = 20/238 (8%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 L++I +F VGYD ++L +ARGIRV + + +D VA+ +GL +AV RR + + Sbjct: 64 ALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFV 123 Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 +G W P + G VGIVGLG IG A+ L+AF + +I Y RR K + Sbjct: 124 RAGRWPKGAF----PLTRKVSGKRVGIVGLGRIGRAIARRLEAFGM-EIAYHGRRPKPD- 177 Query: 995 TALGAQLVPL---DTLC---AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 VP +L AESD + V C T L+ + + P +LVN +RG Sbjct: 178 -------VPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARG 230 Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 ++D+ AL+ L++ +I GAGLDV EP L+ LDN VLTPH +SAT R Sbjct: 231 SVVDEAALIAALQEGRIAGAGLDVFENEPNVPA-ALLDLDNVVLTPHIASATVETRRA 287 |
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
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Score = 193 bits (494), Expect = 4e-55 Identities = 96/251 (38%), Positives = 132/251 (52%), Gaps = 9/251 (3%) Query: 872 RTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGR 931 R NLK++ T + ++L K RGI V G AE L +A++R E Sbjct: 66 RLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGG-GPTATAELTWALILALARNLPEED 124 Query: 932 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 + +G W QT + G GL G T+GIVGLG IG A++ +AF + I ++S Sbjct: 125 AALRAGGW---QTTL-G---TGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNLTA 177 Query: 992 EEGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 E A G + V + L A SD + + L+ T L+G + +LMKPTA+LVNTSRG L Sbjct: 178 ERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPL 237 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 +D+ AL+ L+ +I GA LDV EPLPADHPL L N +LTPH T+ + Sbjct: 238 VDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQ 297 Query: 1111 SAENIIRGYKG 1121 + ENI G Sbjct: 298 AVENIAAWLAG 308 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 185 bits (472), Expect = 3e-52 Identities = 77/235 (32%), Positives = 112/235 (47%), Gaps = 12/235 (5%) Query: 894 IKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG 953 I G R + ++TVAE+ + L +A R+ + W + Sbjct: 69 ITDPGRRWTNAAGAYAETVAEHALALLLAGLRQL---PARARATTWDPA---EEDDLVTL 122 Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTL---CAE 1010 L+G+TV IVG G IG LL F I EG + VP D L + Sbjct: 123 LRGSTVAIVGAGGIGRALIPLLAPFGAKVIAVNRSGRPVEG---ADETVPADRLDEVWPD 179 Query: 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGL 1070 +D + + LT +T L+ + MKP A LVN +RG L+D +ALV+ L+ +I GA L Sbjct: 180 ADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAAL 239 Query: 1071 DVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMI 1125 DV PEPLP HPL L N ++TPH ++ + +R + AEN+ GEP++ Sbjct: 240 DVTDPEPLPDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENVRAFAAGEPLL 294 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 189 bits (483), Expect = 2e-51 Identities = 103/275 (37%), Positives = 146/275 (53%), Gaps = 32/275 (11%) Query: 863 SRNKVKTPK---RTENLKVITTFSVGYDHLELHEIKARGIRV-----GSVGHISSDTVAE 914 S KV T + +NLKVI VG D++++ RGI V G+ IS AE Sbjct: 50 SATKV-TAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNT--IS---AAE 103 Query: 915 YNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETA 972 + I L +A++R + + +G+W K MG L G T+GI+GLG IG E A Sbjct: 104 HTIALMLALARNIPQAHASLKAGKWERK-------KFMGVELYGKTLGIIGLGRIGSEVA 156 Query: 973 KLLKAFKVSKILY----TSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLI 1028 K KAF + I Y + R + LG +LV LD L A +DFI + LT +T LI Sbjct: 157 KRAKAFGMKVIAYDPYISPERAAQ----LGVELVSLDELLARADFITLHTPLTPETRGLI 212 Query: 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD 1088 G ++ + MKP ++N +RGG++D+ AL E LK K+ GA LDV EP P D PL +L Sbjct: 213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEP-PTDSPLFELP 271 Query: 1089 NCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 N V+TPH ++T ++ + AE +I +G P Sbjct: 272 NVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGP 306 |
Length = 526 |
>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 183 bits (466), Expect = 4e-51 Identities = 82/235 (34%), Positives = 120/235 (51%), Gaps = 4/235 (1%) Query: 893 EIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIM 952 + RGI V S +++ VAE+ + + RR +G T G Sbjct: 90 AVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGR--- 146 Query: 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESD 1012 GL G TVGIVG G IG +LL+ F + ++Y E ALG +LV LD L A SD Sbjct: 147 GLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGVELVSLDELLARSD 206 Query: 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 + + LT +T +I + +LM+ A +NT+RG L+D+ AL+ L+ ++ A LDV Sbjct: 207 VVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRL-RAALDV 265 Query: 1073 MIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYE 1127 PEPLP D PL L N +LTPH + +T R + + + R GEP+++E Sbjct: 266 TDPEPLPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYALDELERFLAGEPLLHE 320 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
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Score = 182 bits (463), Expect = 8e-51 Identities = 100/283 (35%), Positives = 150/283 (53%), Gaps = 17/283 (6%) Query: 848 AKLLKAFKVSKILYTSRNKV------KTPKRTENLKVITTFSVGYDHLELHEIKARGIRV 901 + AF ++ L S KV K PK L+ +T SVGYD+ ++ + AR I + Sbjct: 37 EQHAAAFAEAEGLLGSGEKVDAALLEKMPK----LRAASTISVGYDNFDVDALTARKILL 92 Query: 902 GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATV 959 + ++TVA+ + L ++ +RR E + + +GEW T IGP+ G + T+ Sbjct: 93 MHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEW----TASIGPDWFGTDVHHKTL 148 Query: 960 GIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG-TALGAQLVPLDTLCAESDFIFVTC 1018 GIVG+G IG+ A+ ILY +RR +E A+ LDTL ESDF+ + Sbjct: 149 GIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIIL 208 Query: 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 1078 LT +T L G +QF+ MK +AI +N RG ++D+ AL+ L+ +I AGLDV EPL Sbjct: 209 PLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPL 268 Query: 1079 PADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKG 1121 D PL+ L N V PH SAT R ++ + +N+I +G Sbjct: 269 SVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQG 311 |
Length = 323 |
>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
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Score = 181 bits (463), Expect = 8e-51 Identities = 83/257 (32%), Positives = 129/257 (50%), Gaps = 17/257 (6%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 +LK+I GYD +++ + RGI+V + + A+ + L + R F + Sbjct: 75 PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERS 134 Query: 934 ITSGEW----ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 +G+W L H +G T+GI+GLG IG A+ AF + KI+Y +R Sbjct: 135 ARAGKWRGFLDLTLAH-------DPRGKTLGILGLGGIGKAIARKAAAFGM-KIIYHNRS 186 Query: 990 VK--EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 E AL V LD L A+SD + + C LT T LI +K+F+ MK I+VNT+R Sbjct: 187 RLPEELEKALATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTAR 246 Query: 1048 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP-LVQLDNCVLTPHTSSATKAVRDE 1106 G ++D++ALV+ L+ K+ AGLDV EP +P L+++ N L PH + T +++ Sbjct: 247 GAVIDEDALVDALESGKVASAGLDVFENEPEV--NPGLLKMPNVTLLPHMGTLTVETQEK 304 Query: 1107 KSSTSAENIIRGYKGEP 1123 ENI + Sbjct: 305 MEELVLENIEAFLETGK 321 |
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 179 bits (457), Expect = 7e-50 Identities = 100/307 (32%), Positives = 153/307 (49%), Gaps = 37/307 (12%) Query: 843 IGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVG 902 + + + K +V + SR + ++ LK+I T S G+DH++L + RGI V Sbjct: 31 LLDDNVEEFKDAEVISVFVYSRLDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVC 90 Query: 903 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVG 960 +V TVAE+ L +A+SR+ +E + G+++ + G L G T+G Sbjct: 91 NVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQA-------GLRGFELAGKTLG 143 Query: 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCAL 1020 +VG G IG A++ + F + + Y +E LG + V L+ L ESD I + Sbjct: 144 VVGTGRIGRRVARIARGFGMKVLAYDVVPDEELAERLGFRYVSLEELLQESDIISLHVPY 203 Query: 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV------MI 1074 T T LI R+ F+LMKP A+L+NT+RG ++D EALV LK+ K+ GAGLDV + Sbjct: 204 TPQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLR 263 Query: 1075 PE--------------PLPADHPLVQLDNCVLTPH----TSSATKAVRDEKSSTSAENII 1116 E L ADH L++ N ++TPH T A + + D T+ ENI Sbjct: 264 EEAELFREDVSPEDLKKLLADHALLRKPNVIITPHVAYNTKEALERILD----TTVENIK 319 Query: 1117 RGYKGEP 1123 G+P Sbjct: 320 AFAAGQP 326 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
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Score = 182 bits (464), Expect = 6e-49 Identities = 99/286 (34%), Positives = 147/286 (51%), Gaps = 14/286 (4%) Query: 844 GLETAKLLKAFKVSKILYT-SRNKV--KTPKRTENLKVITTFSVGYDHLELHEIKARGIR 900 GL +LL+ L S KV + LKVI VG D++++ ARGI Sbjct: 28 GLSREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGIL 87 Query: 901 VGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGAT 958 V + ++ + AE+ + + +A +R + + GEW K MG L G T Sbjct: 88 VVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKA-------FMGTELYGKT 140 Query: 959 VGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVP-LDTLCAESDFIFVT 1017 +G++GLG IG AK KAF + + Y E LG +LV LD L A +DFI V Sbjct: 141 LGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVH 200 Query: 1018 CALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077 LT +T LIG ++ + MK I+VN +RGG++D+ AL E L++ + A LDV EP Sbjct: 201 TPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP 260 Query: 1078 LPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 P D+PL LDN + TPH ++T+ ++ ++ AE ++ KG P Sbjct: 261 -PTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLP 305 |
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
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Score = 170 bits (433), Expect = 6e-47 Identities = 91/258 (35%), Positives = 125/258 (48%), Gaps = 14/258 (5%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 LK+I GYD+ ++ ARGI V V + ++ AE IGL I + R G + Sbjct: 65 PRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGRHILAGDRF 124 Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR--VK 991 + SG++ + G GL G TVGI+G+G +G A+ L F +LY + Sbjct: 125 VRSGKFGGWRPKFYG---TGLDGKTVGILGMGALGRAIARRLSGFGA-TLLYYDPHPLDQ 180 Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 E AL + V LD L SDF+ + LT DT LI + + MKP A+LVN RG ++ Sbjct: 181 AEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSVV 240 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLP-ADHP-------LVQLDNCVLTPHTSSATKAV 1103 D+ A+ E LK +GG DV E D P L Q D V TPH SA V Sbjct: 241 DEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGSAVDEV 300 Query: 1104 RDEKSSTSAENIIRGYKG 1121 R E +A NI++ +G Sbjct: 301 RLEIELEAALNILQALQG 318 |
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 165 bits (421), Expect = 3e-45 Identities = 96/294 (32%), Positives = 139/294 (47%), Gaps = 25/294 (8%) Query: 846 ETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVG 905 ETA+L K +T + + + LK I+ + GYD+++L K GI V +V Sbjct: 38 ETAELAKGADAILTAFTDKIDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVP 97 Query: 906 HISSDTVAEYNIGLAIAVSRRFQEGRKCIT--SGEWALKQTHIIGPNIMGLKGATVGIVG 963 S + VAE+ I L +A+ R RK I L+ +IG + TVG+VG Sbjct: 98 EYSPNAVAEHTIALILALLRN----RKYIDERDKNQDLQDAGVIGRELEDQ---TVGVVG 150 Query: 964 LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKD 1023 G IG A+ K F + I Y R E G + V L+ L SD I + LT + Sbjct: 151 TGKIGRAVAQRAKGFGMKVIAYDPFR-NPELEDKGVKYVSLEELFKNSDIISLHVPLTPE 209 Query: 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE------- 1076 +I + F LMK I++NT+RG L+D EAL+E L KI GAGLDV+ E Sbjct: 210 NHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKD 269 Query: 1077 ------PLPADHPLVQLDNCVLTPHTSSAT-KAVRDEKSSTSAENIIRGYKGEP 1123 + L + N ++TPHT+ T A+++ S ENI+ +GE Sbjct: 270 LEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMV-EISCENIVDFLEGEE 322 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
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Score = 162 bits (414), Expect = 2e-44 Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 50/227 (22%) Query: 515 PKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572 PK+ +TR R+P A +L E F++ + + +PR+ +E +G LLCT D++ Sbjct: 1 PKVLVTR----RLPEEALALLREGFEVEVWD-EDRPLPREELLEAAKGADGLLCTLTDKI 55 Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632 D ++LD + LKVI +SVGYD Sbjct: 56 DAELLDAAP--------------------------------------PLKVIANYSVGYD 77 Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTHI 691 H+++ KARGI V + + +D A+ L +A +RR EG + + +GEW T + Sbjct: 78 HIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLL 137 Query: 692 IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 +G L G T+GIVG+G IG A+ K F + KILY +R K E Sbjct: 138 LG---TDLHGKTLGIVGMGRIGQAVARRAKGFGM-KILYHNRSRKPE 180 |
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
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Score = 162 bits (412), Expect = 4e-44 Identities = 59/95 (62%), Positives = 72/95 (75%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 LGA+ V LD L AESDF+ + C LT +T LI ++ +LMKPTAILINT+RGG++D++A Sbjct: 184 ELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVDEDA 243 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 LVE LK KI GAGLDV PEPLPADHPL+ L N Sbjct: 244 LVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNV 278 |
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
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Score = 161 bits (410), Expect = 1e-43 Identities = 82/243 (33%), Positives = 122/243 (50%), Gaps = 10/243 (4%) Query: 861 YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLA 920 Y + ++ K NLK+ T +G DH++L RGI V V + +VAE+ + + Sbjct: 73 YMTAERIAKAK---NLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMI 129 Query: 921 IAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKV 980 + + R + G + G W + + L+G TVG VG G IGL + LK F V Sbjct: 130 LILVRNYVPGHEQAIEGGWNVAD---VVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDV 186 Query: 981 SKILYTSR-RVKEE-GTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMK 1037 +LY R R+ EE LG L+ + ++ D + + C L +TE L ++ S MK Sbjct: 187 -HLLYYDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMK 245 Query: 1038 PTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTS 1097 A LVNT+RG + D+EA+ E L+ + G DV P+P P DHP + N +TPH S Sbjct: 246 KGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMPNNAMTPHIS 305 Query: 1098 SAT 1100 T Sbjct: 306 GTT 308 |
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
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Score = 158 bits (403), Expect = 7e-43 Identities = 86/247 (34%), Positives = 125/247 (50%), Gaps = 20/247 (8%) Query: 859 ILYTSRNKVKT--PKRTENLKVITTFSVGYDHLELHEIKARGIRV--GSVGHISSDTVAE 914 ILY + +NLK I +S G D+L L IK +GI + S H S +AE Sbjct: 42 ILYGYNPDFDELDLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIH--SIPIAE 99 Query: 915 YNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKL 974 + +G + + + ++ K +W + + + L G T+ +G G+IG E AK Sbjct: 100 WIVGYILEIYKGLKKAYKNQKEKKWKMDSSL------LELYGKTILFLGTGSIGQEIAKR 153 Query: 975 LKAFKVSKI-LYTSRRVKE---EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 LKAF + I + TS R E + L LD + E+D + LT++T L Sbjct: 154 LKAFGMKVIGVNTSGRDVEYFDKCYPLEE----LDEVLKEADIVVNVLPLTEETHHLFDE 209 Query: 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 1090 F MK A+ +N RG +D++AL+E LK+K+I GA LDV EPLP D PL LDN Sbjct: 210 AFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDLDNV 269 Query: 1091 VLTPHTS 1097 ++TPH S Sbjct: 270 LITPHIS 276 |
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 157 bits (398), Expect = 3e-42 Identities = 80/267 (29%), Positives = 143/267 (53%), Gaps = 14/267 (5%) Query: 865 NKV----KTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLA 920 NKV LK+I + G ++++L + RGI V + + +VA++ + L Sbjct: 52 NKVALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALL 111 Query: 921 IAVSRRFQEGRKCITSGEWALKQTHIIGPN--IMGLKGATVGIVGLGNIGLETAKLLKAF 978 +A++ R + ++ + +G W + + + I+ L+G T+G++G G +G A+L +AF Sbjct: 112 LALATRLPDYQQAVAAGRWQ-QSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAF 170 Query: 979 KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKP 1038 + ++L G +PLD L + D + + C LT+ T LIG ++ +LMKP Sbjct: 171 GM-RVLIGQL----PGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225 Query: 1039 TAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD--NCVLTPHT 1096 A+L+NT+RGGL+D++AL + L+ +GGA DV+ EP +PL+ D ++TPH+ Sbjct: 226 GALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHS 285 Query: 1097 SSATKAVRDEKSSTSAENIIRGYKGEP 1123 + ++ R AEN + G+P Sbjct: 286 AWGSREARQRIVGQLAENARAFFAGKP 312 |
Length = 317 |
>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 155 bits (395), Expect = 1e-41 Identities = 75/202 (37%), Positives = 111/202 (54%), Gaps = 18/202 (8%) Query: 877 KVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS 936 K+I G+++++L K GI V V S VAE+ + L +A++R+ + Sbjct: 70 KLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVRE 129 Query: 937 GEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKIL----YTSRRV 990 G ++L ++G L G TVG++G G IG A++LK F ++L Y + + Sbjct: 130 GNFSLD-------GLLGFDLHGKTVGVIGTGKIGQAFARILKGFGC-RVLAYDPYPNPEL 181 Query: 991 KEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 + LG + V LD L AESD I + C LT +T LI + + MK +L+NTSRGGL Sbjct: 182 AK----LGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGL 237 Query: 1051 LDQEALVEFLKDKKIGGAGLDV 1072 +D +AL+E LK KIGG GLDV Sbjct: 238 IDTKALIEALKSGKIGGLGLDV 259 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
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Score = 147 bits (374), Expect = 1e-40 Identities = 54/106 (50%), Positives = 73/106 (68%) Query: 295 GYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN 354 Y+ + ++ ALGA+ V LD L AESD + + LT +T LI ++ +LMKP AILIN Sbjct: 63 AYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAILIN 122 Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 T+RGGL+D++AL+ LK +I GA LDV PEPLP DHPL++L N Sbjct: 123 TARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNV 168 |
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 150 bits (382), Expect = 5e-40 Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 30/280 (10%) Query: 845 LETAKLLKAFKVSKILYTSR--NKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVG 902 LE A L + + IL S+ ++ + +K I+T S+GYDH++L K GI+V Sbjct: 36 LENAHLAEGYDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVS 95 Query: 903 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVG 960 +V + S ++VA+Y + L + R++++ K +++L + G L+ TVG Sbjct: 96 NVTY-SPNSVADYTVMLMLMALRKYKQIMKRAEVNDYSL-------GGLQGRELRNLTVG 147 Query: 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCAL 1020 ++G G IG K L F KIL EE A+ V LDTL ESD I + L Sbjct: 148 VIGTGRIGQAVIKNLSGFG-CKILAYDPYPNEE-VKKYAEYVDLDTLYKESDIITLHTPL 205 Query: 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE---- 1076 T++T LI ++ + MK I++NT+RG L+D EAL+E L+ KIGGA LDV+ E Sbjct: 206 TEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIY 265 Query: 1077 -------PLPADHPLVQL---DNCVLTPHTSSATK-AVRD 1105 L + L L N +LTPH + T AV D Sbjct: 266 YNDRKGDILS-NRELAILRSFPNVILTPHMAFYTDQAVSD 304 |
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 149 bits (379), Expect = 8e-40 Identities = 54/108 (50%), Positives = 72/108 (66%), Gaps = 6/108 (5%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 A G + V L+ L SD + + LT +T +IG ++F+LMKPTA INT+R GL+D++A Sbjct: 187 ADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDA 246 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC------GGAGLDV 407 L+E L++ KIGGA LDV EPLPADHPL++LDN GA DV Sbjct: 247 LIEALEEGKIGGAALDVFPEEPLPADHPLLKLDNVTLTPHIAGATRDV 294 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 149 bits (379), Expect = 9e-40 Identities = 87/264 (32%), Positives = 143/264 (54%), Gaps = 13/264 (4%) Query: 857 SKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYN 916 SK+L+T + PK LK+I + G ++++L K GI V +V SS TV E+ Sbjct: 51 SKVLFTRETLAQLPK----LKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHV 106 Query: 917 IGLAIAVSRRFQEGRKCITSGEWA-LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL 975 +G+ A+ + S WA KQ I ++G+T+G+ G G +G E +L Sbjct: 107 LGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA 166 Query: 976 KAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 +A + K+LY + + P + + ++D + + C LT+ T+ LI + +L Sbjct: 167 QALGM-KVLYAEHK---GASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLAL 222 Query: 1036 MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQ----LDNCV 1091 MKPTA L+NT RG L+D++AL++ L++ KI GA LDV++ EP D+PL+Q L N + Sbjct: 223 MKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLL 282 Query: 1092 LTPHTSSATKAVRDEKSSTSAENI 1115 +TPH + A+ + + A+NI Sbjct: 283 ITPHIAWASDSAVTTLVNKVAQNI 306 |
Length = 314 |
>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 149 bits (379), Expect = 2e-39 Identities = 80/266 (30%), Positives = 126/266 (47%), Gaps = 33/266 (12%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 +K I S G D ++L K G+++ +V S +AE+ + A+ + R E + + Sbjct: 68 GIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRV 127 Query: 935 TSGE--WALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990 G+ WA P ++G ++ TVGI+G G IG AK+ K F +K++ Sbjct: 128 AKGDFRWA--------PGLIGREIRDLTVGIIGTGRIGSAAAKIFKGFG-AKVIAYDPYP 178 Query: 991 KEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 E L+ L ++D I + LTK+ LI + F+ MK AILVN +RGGL Sbjct: 179 NPELEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGL 238 Query: 1051 LDQEALVEFLKDKKIGGAGLDVM---------------IPEPLPADHPLVQLDNCVLTPH 1095 +D +AL++ L KI GA LD I + + + L+ + N ++TPH Sbjct: 239 VDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEVLKE--LIAMPNVLITPH 296 Query: 1096 TSSATK-AVRD--EKSSTSAENIIRG 1118 + T AV++ E S A II G Sbjct: 297 IAFYTDTAVKNMVEISLDDALEIIEG 322 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 148 bits (376), Expect = 2e-39 Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 13/220 (5%) Query: 908 SSDTVAEYNIGLAIAVSRRFQEGRKCITS-GEWALKQTHIIGPNIMGLKGATVGIVGLGN 966 +++ +AE+ + +A ++R E + +W + +G L G+T+GIVG G Sbjct: 95 AAEAIAEFVLAAILAAAKRLPEIW--VKGAEQWRRE---PLGS----LAGSTLGIVGFGA 145 Query: 967 IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTE 1025 IG A+ A + ++L R + G + L L A SD + + LT +T Sbjct: 146 IGQALARRALALGM-RVLALRRSGRPSDVP-GVEAAADLAELFARSDHLVLAAPLTPETR 203 Query: 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLV 1085 LI + KP L+N +RGGL+DQEAL+E L +I A LDV PEPLP HPL Sbjct: 204 HLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDPEPLPEGHPLY 263 Query: 1086 QLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMI 1125 L+PHTS+ R + EN+ R G+P+ Sbjct: 264 THPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQPLH 303 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 147 bits (373), Expect = 8e-39 Identities = 86/282 (30%), Positives = 129/282 (45%), Gaps = 28/282 (9%) Query: 869 TPKRTENLKVITTFSVGYDHLELHE-IKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRF 927 + NL+++ FS G DH H K + + + I +AE+ IG + +S F Sbjct: 48 DAEDVPNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHF 107 Query: 928 QEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 987 + + W ++ G VGI+G G+IG +TA+L +A + YT Sbjct: 108 LQYIELQKEQTW---GRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVYAYTR 164 Query: 988 R-RVKEE----------GTALGAQLVPL------------DTLCAESDFIFVTCALTKDT 1024 R E GT +P + L + D + V+ LT T Sbjct: 165 SPRPTPESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDLDLLVVSLPLTPAT 224 Query: 1025 EQLIGRKQFSLM-KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 + L+G ++F ++ K + N +RG L+D +ALV L+ +I GA LDV PEPLPADHP Sbjct: 225 KHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPADHP 284 Query: 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMI 1125 L N ++TPH S T+ D EN+ R KGEP+I Sbjct: 285 LWSAPNVIITPHVSWQTQEYFDRALDVLEENLERLRKGEPLI 326 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334 |
>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
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Score = 146 bits (371), Expect = 9e-39 Identities = 86/261 (32%), Positives = 143/261 (54%), Gaps = 16/261 (6%) Query: 865 NKVKTPK----RTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLA 920 NKV K + NLK+I + G +++++ K +GI V +V S+++VA++ + Sbjct: 49 NKVVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAML 108 Query: 921 IAVSRRFQEGRKCITSGEWALKQ--THIIGPNIMG-LKGATVGIVGLGNIGLETAKLLKA 977 +++ R + + SGE++ THI P +G +KG GI+GLG IG AK+ +A Sbjct: 109 LSLLGRINYYDRYVKSGEYSESPIFTHISRP--LGEIKGKKWGIIGLGTIGKRVAKIAQA 166 Query: 978 FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMK 1037 F +K++Y S K + + V L+ L SD I + L + T+ LI K+ L+K Sbjct: 167 FG-AKVVYYSTSGKNKNEEY--ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLK 223 Query: 1038 PTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL---DNCVLTP 1094 AIL+N RGG+++++ L + L +K I AGLDV+ EP+ +HPL+ + + ++TP Sbjct: 224 DGAILINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLSIKNKEKLLITP 282 Query: 1095 HTSSATKAVRDEKSSTSAENI 1115 H + A+K R ENI Sbjct: 283 HIAWASKEARKTLIEKVKENI 303 |
Length = 311 |
>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 148 bits (375), Expect = 1e-38 Identities = 83/238 (34%), Positives = 120/238 (50%), Gaps = 10/238 (4%) Query: 869 TPKRTE---NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSR 925 T +R NLK+ T +G DH++L GI V V +S +VAE+ + + +A+ R Sbjct: 105 TAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVR 164 Query: 926 RFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 985 ++ + G W + L+G TVGIVG G IGL + LK F V K+ Y Sbjct: 165 NYEPSHRQAVEGGWNIAD---CVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHY 220 Query: 986 TSR-RVKEEGTA-LGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 1042 T R R+ EE LG D+L + D + + C L +TE L S MK + L Sbjct: 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYL 280 Query: 1043 VNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSAT 1100 VNT+RG ++D++A+V L+ + G DV P+P PADHP + +TPH S T Sbjct: 281 VNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTT 338 |
Length = 385 |
>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 145 bits (367), Expect = 3e-38 Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 19/252 (7%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 L+V+ T S GYD + + G+ + + + + AE + L +A R + Sbjct: 60 RLRVVQTLSAGYDGV--LPLLPEGVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQ 117 Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 G W ++T L V IVG G+IG + L F+V + +R + Sbjct: 118 ARGRWEPRRTP-------SLADRRVLIVGYGSIGRAIERRLAPFEVR-VTRVARTARP-- 167 Query: 995 TALGAQLVP---LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 G Q+ L L E+D + + LT +T L+ + + M A+LVN +RG ++ Sbjct: 168 ---GEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVV 224 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 D +ALV L ++ A LDV PEPLP HPL ++TPH AT A + Sbjct: 225 DTDALVAELASGRLR-AALDVTDPEPLPPGHPLWSAPGVLITPHVGGATPAFLPRAYALV 283 Query: 1112 AENIIRGYKGEP 1123 + R GEP Sbjct: 284 RRQLRRYAAGEP 295 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 142 bits (360), Expect = 3e-37 Identities = 50/94 (53%), Positives = 63/94 (67%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 A G +LV LD L AE+DFI + LT +T LI ++ + MKP AILINT+RGG++D+ A Sbjct: 178 AGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEAA 237 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 L + LK KI GA LDV EP PAD PL+ L N Sbjct: 238 LADALKSGKIAGAALDVFEQEPPPADSPLLGLPN 271 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
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Score = 141 bits (357), Expect = 9e-37 Identities = 45/93 (48%), Positives = 59/93 (63%) Query: 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367 G ++V LD L A SD + + C LT +T LI + +LMKP A L+NT+RGGL+D+ AL Sbjct: 184 GVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALA 243 Query: 368 EFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 LK +I GA LDV+ EP PAD PL+ N Sbjct: 244 RALKSGRIAGAALDVLEEEPPPADSPLLSAPNV 276 |
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 140 bits (356), Expect = 1e-36 Identities = 50/95 (52%), Positives = 62/95 (65%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 G + V L+ L ESDFI + LT +T LI + +LMKP AILINT+RGGL+D+EA Sbjct: 182 EHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEA 241 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 L E LK +I GA LDV EP PAD PL++L N Sbjct: 242 LYEALKSGRIAGAALDVFEEEPPPADSPLLELPNV 276 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 138 bits (350), Expect = 7e-36 Identities = 51/110 (46%), Positives = 67/110 (60%), Gaps = 3/110 (2%) Query: 294 FGYN--WFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 351 FG + ER L V LD L A+SD I + C LT +T LI ++ + MKP AI Sbjct: 169 FGMKVLFAERKGAPPLREGYVSLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAI 228 Query: 352 LINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQ-LDNC 400 LINT+RGGL+D++AL + L KI GAGLDV+ EP AD+PL++ N Sbjct: 229 LINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPRADNPLLKAAPNL 278 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 138 bits (349), Expect = 9e-36 Identities = 50/102 (49%), Positives = 66/102 (64%) Query: 298 WFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 357 + LG + V LD L AESD + + LT +T LIG ++ + MKP AILINT+R Sbjct: 175 RDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTAR 234 Query: 358 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 GGL+D+EAL+ L+ + GAGLDV EPLP D PL++LDN Sbjct: 235 GGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDN 276 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 137 bits (347), Expect = 2e-35 Identities = 70/233 (30%), Positives = 116/233 (49%), Gaps = 21/233 (9%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 +LK I G +++++ RGI V + +++ VAE I + +A+SR + K Sbjct: 49 PSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQAIKW 108 Query: 934 ITSGEWAL-------KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKIL-- 984 +T+G+ + +G L+G T+G++GLGNIG A A + K++ Sbjct: 109 VTNGDGDDISKGVEKGKKQFVGT---ELRGKTLGVIGLGNIGRLVANAALALGM-KVIGY 164 Query: 985 --YTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 1042 Y S + + ++ L+ L A +D+I + LT +T LI + + MKP AIL Sbjct: 165 DPYLSVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKMKPGAIL 224 Query: 1043 VNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPH 1095 +N +RG ++D+EAL+E L + K+GG D P L L N + TPH Sbjct: 225 LNFARGEIVDEEALLEALDEGKLGGYVTDFPEPALLGH------LPNVIATPH 271 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
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Score = 133 bits (336), Expect = 3e-34 Identities = 50/94 (53%), Positives = 68/94 (72%) Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366 LG ++V LD L A+SD + + LT +T LI ++ +LMKP A+L+NT+RGGL+D++AL Sbjct: 181 LGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDAL 240 Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 + LK KI GA LDV PEPLPADHPL++L N Sbjct: 241 LRALKSGKIAGAALDVFEPEPLPADHPLLELPNV 274 |
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
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Score = 134 bits (339), Expect = 3e-34 Identities = 52/94 (55%), Positives = 67/94 (71%) Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366 LGA+ V LD L AESD I + C LT +T LI ++ + MKP AIL+NT+RGGL+D++AL Sbjct: 187 LGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQAL 246 Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 ++ LK KI GAGLDV EP DHPL++LDN Sbjct: 247 IDALKSGKIAGAGLDVFENEPALFDHPLLRLDNF 280 |
Length = 324 |
>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 131 bits (332), Expect = 1e-33 Identities = 81/264 (30%), Positives = 130/264 (49%), Gaps = 16/264 (6%) Query: 845 LETAKLLKAFKVSKILYTSRNKVKTPKR----TENLKVITTFSVGYDHLELHEIKARGIR 900 L+ +L++A K +L R+K + + L I F +G + ++L RGI Sbjct: 31 LDEDELIEALKDVHLLGI-RSKTQLTEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIP 89 Query: 901 VGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVG 960 V + ++ +VAE IG I ++RR + G W ++ ++G T+G Sbjct: 90 VFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIW--NKSAT---GSHEVRGKTLG 144 Query: 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCAL 1020 I+G G+IG + + L +A + I Y G A Q+ L+ L AE+DF+ + Sbjct: 145 IIGYGHIGSQLSVLAEALGMRVIFYDIAEKLPLGNAR--QVSSLEELLAEADFVTLHVPA 202 Query: 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL-- 1078 T T+ +IG ++ + MK AIL+N SRG ++D +AL E L+ + GA +DV EP Sbjct: 203 TPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASN 262 Query: 1079 --PADHPLVQLDNCVLTPHTSSAT 1100 P PL L N +LTPH +T Sbjct: 263 GEPFSSPLQGLPNVILTPHIGGST 286 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 131 bits (331), Expect = 8e-33 Identities = 78/258 (30%), Positives = 124/258 (48%), Gaps = 13/258 (5%) Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930 K+ +NL+++ T +G DH++L A G+ V V + +VAE + + + R F G Sbjct: 117 KKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPG 176 Query: 931 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR-- 988 + SGEW + I L+G TVG VG G IG + LK F +LY R Sbjct: 177 YHQVVSGEWNVAG---IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLK 232 Query: 989 ----RVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVN 1044 KE G L D + + D + + LT+ T + +++ + MK ++VN Sbjct: 233 MDPELEKETGAKFEEDL---DAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVN 289 Query: 1045 TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVR 1104 +RG ++D +A+ + IGG G DV P+P P DHP + N +TPH S T + Sbjct: 290 NARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQ 349 Query: 1105 DEKSSTSAENIIRGYKGE 1122 ++ + + R +KGE Sbjct: 350 LRYAAGVKDMLDRYFKGE 367 |
Length = 386 |
>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
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Score = 129 bits (326), Expect = 1e-32 Identities = 43/92 (46%), Positives = 57/92 (61%) Query: 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367 + LD L AE+D + + LT +T LI ++ + MKP AILIN +RGG++D++AL+ Sbjct: 185 VVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALL 244 Query: 368 EFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 L KI GA LDV EPLPAD PL L N Sbjct: 245 AALDSGKIAGAALDVFEEEPLPADSPLWDLPN 276 |
Length = 324 |
>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
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Score = 128 bits (325), Expect = 1e-32 Identities = 40/87 (45%), Positives = 55/87 (63%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 LD L E+D++ LT +T L ++F+ MKP A+LIN RG ++D++AL+E L+ Sbjct: 183 LDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESG 242 Query: 374 KIGGAGLDVMIPEPLPADHPLVQLDNC 400 +I GA LDV EPLPAD PL L N Sbjct: 243 RIAGAALDVFEEEPLPADSPLWDLPNV 269 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
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Score = 129 bits (325), Expect = 4e-32 Identities = 87/266 (32%), Positives = 143/266 (53%), Gaps = 22/266 (8%) Query: 877 KVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS 936 K + +VGY+++++ GI VG+ + ++T AE L++A +RR E + + + Sbjct: 88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147 Query: 937 GEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL-KAFKVSKI---LYTSRRVKE 992 G + H+ N+ LKG TVG++G G IG A+++ + FK++ I LY S R+++ Sbjct: 148 GLYEGWLPHLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEK 205 Query: 993 EGTALGAQL-------------VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPT 1039 TA G L ++ + E+D I + L K T LI +++ +LMK Sbjct: 206 FVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKE 265 Query: 1040 AILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP-LVQLDNCVLTPHTSS 1098 A+LVN SRG ++D+ ALVE LK + GLDV E P P L + N V+ PH +S Sbjct: 266 AVLVNASRGPVIDEVALVEHLKANPMFRVGLDVF--EDEPYMKPGLADMKNAVVVPHIAS 323 Query: 1099 ATKAVRDEKSSTSAENIIRGYKGEPM 1124 A+K R+ ++ +A N++ KG P+ Sbjct: 324 ASKWTREGMATLAALNVLGKLKGYPV 349 |
Length = 386 |
>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
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Score = 125 bits (317), Expect = 2e-31 Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 3/108 (2%) Query: 295 GYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN 354 Y+ E+ ALG + V LD L AESD + + L +T+ LIG+++ +LMK +AILIN Sbjct: 172 AYSRSEKEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILIN 231 Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDV--MIPEPLPADHPLVQLDNC 400 T+RG ++D EAL + L + KI GAG+DV M P PLPAD+PL+ N Sbjct: 232 TARGPVVDNEALADALNEGKIAGAGIDVFDMEP-PLPADYPLLHAPNT 278 |
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
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Score = 124 bits (314), Expect = 5e-31 Identities = 65/227 (28%), Positives = 100/227 (44%), Gaps = 48/227 (21%) Query: 514 KPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVD 573 K + TR E L E F++ Y P E+L+ A++ DR+D Sbjct: 2 KIVVLSTRK-LPP-EVLERLKEKFEVERYEDDLT--PDTELAERLKDADAVITFVNDRID 57 Query: 574 KQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDH 633 +VL+ + P LK+I T S GYD+ Sbjct: 58 AEVLE--------------------KLP------------------GLKLIATRSAGYDN 79 Query: 634 LELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWAL--KQTHI 691 ++L K RGI V +V S++ VAE+ + L +A++RR EG + + G W+L + Sbjct: 80 VDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPL 139 Query: 692 IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 +G ++ G T+GI+GLG IG A+ LK F + K+LY R E Sbjct: 140 LGFDLRGK---TLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPNPE 182 |
Length = 324 |
>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 123 bits (311), Expect = 7e-31 Identities = 43/104 (41%), Positives = 58/104 (55%), Gaps = 4/104 (3%) Query: 301 RSNGTALGA-QLVPLDTL---CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 356 RS GA + VP D L ++D + + LT +T L+ + MKP A L+N + Sbjct: 156 RSGRPVEGADETVPADRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVA 215 Query: 357 RGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 RG L+D +ALV+ L+ +I GA LDV PEPLP HPL L N Sbjct: 216 RGPLVDTDALVDALRSGEIAGAALDVTDPEPLPDGHPLWSLPNA 259 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 128 bits (324), Expect = 8e-31 Identities = 45/93 (48%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366 LG +LV LD L A +DFI + LT +T LIG ++ + MKP +IN +RGG++D+ AL Sbjct: 181 LGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAAL 240 Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 E LK K+ GA LDV EP P D PL +L N Sbjct: 241 AEALKSGKVAGAALDVFEKEP-PTDSPLFELPN 272 |
Length = 526 |
>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 123 bits (310), Expect = 2e-30 Identities = 82/262 (31%), Positives = 124/262 (47%), Gaps = 33/262 (12%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 +K + T +VG++H++L K G ++ V S + +AE LA+ +SR Sbjct: 68 GIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAY----- 122 Query: 935 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKI---LYTSRR 989 + + + P + ++ +TVGI+G G IGL AKL K I +Y S Sbjct: 123 -TASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIGLTAAKLFKGLGAKVIGYDIYPSDA 181 Query: 990 VKEEGTALGAQLVPLDTLCAESDFIFVTCALTK-DTEQLIGRKQFSLMKPTAILVNTSRG 1048 K+ T V LD L +SD I + K ++LI ++ S MK AIL+NT+RG Sbjct: 182 AKDVVT-----FVSLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARG 236 Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPE-------------PLPADHPLVQLDNCVL-TP 1094 L D+EA++E L+ K+ G G DV+ E P L+ L VL TP Sbjct: 237 ELQDEEAILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTP 296 Query: 1095 HTSSAT-KAVRDEKSSTSAENI 1115 H S T +A+ + TS EN+ Sbjct: 297 HIGSYTDEALSN-MIETSYENL 317 |
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 121 bits (306), Expect = 5e-30 Identities = 49/95 (51%), Positives = 64/95 (67%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 GA+ V L+ L AESD I + LT++T +I K FS MK IL+NT+RG L+D+EA Sbjct: 188 KKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEA 247 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 L+E LK KI GAGLDV+ EP+ ADHPL+ +N Sbjct: 248 LIEALKSGKIAGAGLDVLEEEPIKADHPLLHYENV 282 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
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Score = 121 bits (305), Expect = 1e-29 Identities = 79/246 (32%), Positives = 121/246 (49%), Gaps = 25/246 (10%) Query: 872 RTENLKVITTFSVGYDHLELHEIKARGI---RVGSVGHISSDTVAEYNIGLAIAVSRRFQ 928 R +K+I F VG + +++ GI R+ S G ++ + AE I L + + R+ Sbjct: 79 RASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQN 138 Query: 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 E + +LK + P L G TV I+G G IG+E AK L+ F V K+L T R Sbjct: 139 EMQI-------SLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 Query: 989 R-VKEEGTALGAQLVPLDTL------------CA-ESDFIFVTCALTKDTEQLIGRKQFS 1034 E L +D L A E+D + + C LTK+T ++ + S Sbjct: 191 SWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLS 250 Query: 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTP 1094 MK A+LVN +RGGLLD +A++ L+ +GG +DV EP D P+++ N ++TP Sbjct: 251 SMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITP 310 Query: 1095 HTSSAT 1100 H + T Sbjct: 311 HVAGVT 316 |
Length = 347 |
>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
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Score = 119 bits (300), Expect = 2e-29 Identities = 55/202 (27%), Positives = 78/202 (38%), Gaps = 47/202 (23%) Query: 537 FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQ 596 F++I D L AL+ +S V +VL ++ Sbjct: 22 FEVIVADDLLA----DELEALLADADALIVSSTTPVTAEVLAKA---------------- 61 Query: 597 MFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDT 656 LK I G D+++L K RGI V +V +++ Sbjct: 62 ----------------------PKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEA 99 Query: 657 VAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLET 716 VAE+ +GL +A+ RR + G L L+G TVGIVGLG IG Sbjct: 100 VAEHALGLLLALLRRLPRADAAVRRGWGWLWAGFPGY----ELEGKTVGIVGLGRIGQRV 155 Query: 717 AKLLKAFKVSKILYTSRRVKEE 738 AK L+AF + K+LY R K E Sbjct: 156 AKRLQAFGM-KVLYYDRTRKPE 176 |
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
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Score = 118 bits (299), Expect = 3e-29 Identities = 75/260 (28%), Positives = 111/260 (42%), Gaps = 27/260 (10%) Query: 875 NLKVITTFSVGYDHLELHEIKARGI---RVGSVGHISSDTVAEYNIGLAIAVSRRFQEGR 931 NLK I + G DHL + R+ V + +AEY + + + R Sbjct: 58 NLKAIFSLGAGVDHLLADPD-LPDVPIVRL--VDPGLAQGMAEYVLAAVLRLHRDMDRYA 114 Query: 932 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA--FKV---SKILYT 986 G W + P VG++GLG +G A+ L A F V S+ Sbjct: 115 AQQRRGVW---KPLPQRPA----AERRVGVLGLGELGAAVARRLAALGFPVSGWSR---- 163 Query: 987 SRRVKEEGTAL-GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNT 1045 S + E T G + LD A++D + LT +T ++ + + + A L+N Sbjct: 164 SPKDIEGVTCFHGEEG--LDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALINV 221 Query: 1046 SRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRD 1105 RG L + L+ L + GA LDV EPLPADHPL + +TPH ++ T D Sbjct: 222 GRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPLWRHPRVTVTPHIAAIT--DPD 279 Query: 1106 EKSSTSAENIIRGYKGEPMI 1125 ++ AENI R GEP+ Sbjct: 280 SAAAQVAENIRRLEAGEPLP 299 |
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 117 bits (295), Expect = 9e-29 Identities = 45/94 (47%), Positives = 61/94 (64%), Gaps = 1/94 (1%) Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366 LG + V L+ L SDFI + LT +T+ +I +K+ LMK AI+INTSRGG++D+EAL Sbjct: 180 LGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEAL 239 Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 +E LK K+ GA LDV EP P L++L N Sbjct: 240 LEALKSGKLAGAALDVFENEPPPG-SKLLELPNV 272 |
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 118 bits (297), Expect = 9e-29 Identities = 42/95 (44%), Positives = 57/95 (60%), Gaps = 1/95 (1%) Query: 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 ALG +LV LD L A SD + + LT +T +I + +LM+ A INT+RG L+D+ Sbjct: 189 AALGVELVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEA 248 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 AL+ L+ ++ A LDV PEPLP D PL L N Sbjct: 249 ALLAELRSGRL-RAALDVTDPEPLPPDSPLRTLPN 282 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 116 bits (294), Expect = 3e-28 Identities = 69/227 (30%), Positives = 107/227 (47%), Gaps = 36/227 (15%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 +K + T ++G DH++ +K RGI + ++++VAEY + A+ Q Sbjct: 57 KVKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVAEY---VLSALLVLAQRQGF-- 111 Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 LKG TVGIVG+GN+G A+ L+A ++ +L R + EG Sbjct: 112 ------------------SLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPRAEAEG 153 Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRGGL 1050 V L+ L AE+D I + LT+D T L+ + +KP IL+N SRG + Sbjct: 154 ---DPGFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAV 210 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVL--TPH 1095 +D +AL+ L+ K LDV EP ++L + V TPH Sbjct: 211 IDNQALLALLQRGKDLRVVLDVWENEP----EIDLELLDKVDIATPH 253 |
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
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Score = 115 bits (290), Expect = 5e-28 Identities = 55/223 (24%), Positives = 90/223 (40%), Gaps = 50/223 (22%) Query: 531 EILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFF 590 E+L E ++ + + + +E + AL+ S V +VL+ + Sbjct: 13 ELLKEGGEVEVHDE----LLTEELLEAAKDADALIVRSTTPVTAEVLEAA---------- 58 Query: 591 GLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVG 650 LKVI VG D+++L RGI V +V Sbjct: 59 ----------------------------PGLKVIARRGVGVDNIDLDAATERGILVTNVP 90 Query: 651 HISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLG 710 S+++VAE +GL +A++RR E + +G+W GP + L G T+G++G G Sbjct: 91 GYSTESVAELTVGLILALARRIPEADASVRAGDWKKG-----GPIGLELYGKTLGVIGGG 145 Query: 711 NIGLETAKLLKAFK---VSKILYTSRRVKEEGQLFSLVYDFCR 750 IG A + KA V+ Y + EEG + L+ D Sbjct: 146 GIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGVEVLLLDLLL 188 |
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
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Score = 114 bits (289), Expect = 6e-28 Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 1/95 (1%) Query: 306 ALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 A G + V + L A SD + + L+ T L+G + +LMKPTA+L+NTSRG L+D+ Sbjct: 182 AAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEG 241 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 AL+ L+ +I GA LDV EPLPADHPL L N Sbjct: 242 ALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPN 276 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 114 bits (286), Expect = 2e-27 Identities = 74/241 (30%), Positives = 109/241 (45%), Gaps = 12/241 (4%) Query: 862 TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 +S N +R L+ + + G D + L A + V S + TVAE+ + L + Sbjct: 46 SSDNLADAARRLTRLRWVQALAAGPDAV-LAAGFAPEVAVTSGRGLHDGTVAEHTLALIL 104 Query: 922 AVSRRFQEGRKCITSGEWALK----QTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA 977 A RR E R+ WA + Q + L GA V I G G+IG A LL A Sbjct: 105 AAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIGQRLAPLLTA 164 Query: 978 FKVSKILYTSRRVKEEGTALGAQLVPLDTLCA---ESDFIFVTCALTKDTEQLIGRKQFS 1034 +++ +R G G +V D L E+D + + T T + + + Sbjct: 165 LG-ARVTGVARS---AGERAGFPVVAEDELPELLPETDVLVMILPATPSTAHALDAEVLA 220 Query: 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTP 1094 + A +VN RG +D++ALV L+ ++GGA LDV EPLPA PL N +LTP Sbjct: 221 ALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSPLWDAPNLILTP 280 Query: 1095 H 1095 H Sbjct: 281 H 281 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
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Score = 111 bits (280), Expect = 1e-26 Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 6/124 (4%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 +R L E+L+ LR F+++ + + +PR+ +E KG LLC K+D E+LD Sbjct: 6 TRRLPEEALALLR--EGFEVEVWD-EDRPLPREELLEAAKGADGLLCTLTDKIDAELLDA 62 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVG-TVGPVSSDTVAEYNIGLAIAVSRRFQQR 158 + LKVIA +SVG+DH+ +D K+RGI V T V +D A+ L +A +RR + Sbjct: 63 AP-PLKVIANYSVGYDHIDVDAAKARGIPVTNTPD-VLTDATADLAFALLLAAARRVVEG 120 Query: 159 HNWI 162 ++ Sbjct: 121 DRFV 124 |
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 110 bits (278), Expect = 2e-26 Identities = 46/95 (48%), Positives = 57/95 (60%), Gaps = 1/95 (1%) Query: 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 LGA V LD L ESDF+ + T +T LI F LMKPTA LIN +RG L+D++ Sbjct: 184 KELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEK 243 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 ALV+ LK +I GA LDV EP + L +LDN Sbjct: 244 ALVDALKTGEIAGAALDVFEFEPEVSPE-LKKLDN 277 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 110 bits (279), Expect = 2e-26 Identities = 42/78 (53%), Positives = 51/78 (65%) Query: 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 LG + V LD L AESD I + C LT +T LI + + MK +LINTSRGGL+D + Sbjct: 182 AKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTK 241 Query: 365 ALVEFLKDKKIGGAGLDV 382 AL+E LK KIGG GLDV Sbjct: 242 ALIEALKSGKIGGLGLDV 259 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 110 bits (276), Expect = 4e-26 Identities = 70/256 (27%), Positives = 120/256 (46%), Gaps = 17/256 (6%) Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930 ++ NLK I G ++++L K +GI + + + D V E+ +G+ +A+ + Sbjct: 58 EKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRA 117 Query: 931 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990 + + +G W + G + L G TVGI+G GN+G AK L F I Y + Sbjct: 118 DQEVRNGIWDREGNR--G---VELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKN 172 Query: 991 KEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 G A A+ V L+TL E+D + + LT +T ++ ++ S K +NT+RG + Sbjct: 173 F--GDA-YAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKV 229 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP---------LVQLDNCVLTPHTSSATK 1101 + + LV+ LK KI GA LDV+ E + L++ +LTPH + T Sbjct: 230 VVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWTF 289 Query: 1102 AVRDEKSSTSAENIIR 1117 ++ + + I Sbjct: 290 ESYEKIAEVLVDKIKA 305 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
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Score = 108 bits (272), Expect = 2e-25 Identities = 45/93 (48%), Positives = 61/93 (65%), Gaps = 1/93 (1%) Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366 LGA+ PL+ L ESDF+ + LTK+T +I ++ LMKPTAIL+NT+RG ++D +AL Sbjct: 191 LGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKAL 250 Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 V+ LK+ I GAGLDV EP + L L N Sbjct: 251 VKALKEGWIAGAGLDVFEEEPYY-NEELFSLKN 282 |
Length = 333 |
>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
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Score = 108 bits (272), Expect = 2e-25 Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 50/231 (21%) Query: 513 SKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572 KPK+F+TR+ E+L E F++ + E +IPR++ +EK+R AL+ +R+ Sbjct: 1 MKPKVFITREIPEN--GIEMLEEHFEVEVWE-DEREIPREVLLEKVRDVDALVTMLSERI 57 Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632 D +V + + L+++ ++VGYD Sbjct: 58 DCEVFEAA--------------------------------------PRLRIVANYAVGYD 79 Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQT--H 690 ++++ E RGI V + + ++ A++ L +A +RR E + SGEW + H Sbjct: 80 NIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWH 139 Query: 691 IIGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 P + + G T+GI+G G IG A+ K F + +ILY SR K E Sbjct: 140 ---PLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPE 186 |
Length = 333 |
>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 106 bits (268), Expect = 4e-25 Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 5/121 (4%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 L++I VG D ++L ARGI V ++ ++++VAE+ + L +A+ RR E + Sbjct: 64 PRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPEADRE 123 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 + +G W + G L G TVGIVGLGNIG A+ L+ F V +++Y R E Sbjct: 124 LRAGRWGRPE----GRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV-EVIYYDRFRDPE 178 Query: 739 G 739 Sbjct: 179 A 179 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
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Score = 106 bits (266), Expect = 7e-25 Identities = 42/92 (45%), Positives = 56/92 (60%) Query: 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367 A+ LDTL ESDF+ + LT +T L G +QF+ MK +AI IN RG ++D+ AL+ Sbjct: 188 NARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALI 247 Query: 368 EFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 L+ +I AGLDV EPL D PL+ L N Sbjct: 248 AALQKGEIHAAGLDVFEQEPLSVDSPLLSLPN 279 |
Length = 323 |
>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 107 bits (271), Expect = 1e-24 Identities = 79/230 (34%), Positives = 114/230 (49%), Gaps = 19/230 (8%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDT--VAEYNIGLAIAVSRRFQEGR 931 E L I F +G + ++L RGI V + S+T VAE IG I + R E Sbjct: 74 EKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPF--SNTRSVAELVIGEIILLLRGIPEKN 131 Query: 932 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 G W K ++G T+GIVG G+IG + + L ++ + Y Sbjct: 132 AKAHRGGW-NKSAA----GSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDI---- 182 Query: 992 EEGTALG-AQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 E+ LG A+ V L+ L A+SD + + T T+ +IG ++ +LMKP AIL+N SRG Sbjct: 183 EDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT 242 Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH----PLVQLDNCVLTPH 1095 ++D +AL + LK + GA +DV EP PL LDN +LTPH Sbjct: 243 VVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPH 292 |
Length = 409 |
>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
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Score = 104 bits (263), Expect = 2e-24 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 5/119 (4%) Query: 620 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 679 L++I +F VGYD ++L +ARGIRV + + +D VA+ +GL +AV RR + + Sbjct: 64 ALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFV 123 Query: 680 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 +G W P + G VGIVGLG IG A+ L+AF + +I Y RR K + Sbjct: 124 RAGRWPKGAF----PLTRKVSGKRVGIVGLGRIGRAIARRLEAFGM-EIAYHGRRPKPD 177 |
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
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Score = 104 bits (262), Expect = 3e-24 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 11/131 (8%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 AL V LD L A+SD + + C LT T LI +K+F+ MK I++NT+RG ++D++A Sbjct: 195 ALATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDA 254 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLP----ADHPLVQL-DNCGGAGLDVMIPEPLPADHPLV 420 LV+ L+ K+ AGLDV EP P V L + G ++ + Sbjct: 255 LVDALESGKVASAGLDVFENEPEVNPGLLKMPNVTLLPHMGTLTVETQE------KMEEL 308 Query: 421 QLDNCEEFFEE 431 L+N E F E Sbjct: 309 VLENIEAFLET 319 |
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 102 bits (257), Expect = 1e-23 Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 57/232 (24%) Query: 510 KIMSKPKLFLTRDDYSRVPAFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTS 568 K++ P+ F + A E+L F+++ P + + IE L+ ++ Sbjct: 1 KVLVTPRSFSKYSE----EAKELLEAAGFEVVLNP-LGRPLTEEELIELLKDADGVI-AG 54 Query: 569 RDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFS 628 D + ++VL + LKVI+ + Sbjct: 55 LDPITEEVLAAA--------------------------------------PRLKVISRYG 76 Query: 629 VGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQ 688 VGYD+++L K RGI V + +S++VAE IGL +A++R+ + + + +G W Sbjct: 77 VGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAGGW---- 132 Query: 689 THIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 +G L G T+GI+GLG IG A+ L F + K+L EE Sbjct: 133 -----DRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGM-KVLAYDPYPDEE 178 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 101 bits (254), Expect = 3e-23 Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 54/228 (23%) Query: 516 KLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVD 573 K+ +T +P A E L E F++ Y G I ++ +E++ AL+ VD Sbjct: 2 KVLVT----GWIPKEALEELEENFEVTYYD-GLGLISKEELLERIADYDALITPLSTPVD 56 Query: 574 KQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDH 633 K+++D + KNLK+I + G+D+ Sbjct: 57 KEIIDAA--------------------------------------KNLKIIANYGAGFDN 78 Query: 634 LELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG-RKCITSG--EWALKQTH 690 +++ K +GI V + +S++ AE GL +A++RR EG R G WA Sbjct: 79 IDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMRRGGFLGWAP--LF 136 Query: 691 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 +G L G T+GI+G+G IG A+ KAF + KILY +R E Sbjct: 137 FLGHE---LAGKTLGIIGMGRIGQAVARRAKAFGM-KILYYNRHRLSE 180 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
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Score = 104 bits (261), Expect = 5e-23 Identities = 43/94 (45%), Positives = 59/94 (62%), Gaps = 2/94 (2%) Query: 307 LGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 LG +LV LD L A +DFI V LT +T LIG ++ + MK I++N +RGG++D+ A Sbjct: 179 LGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAA 238 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 L E L++ + A LDV EP P D+PL LDN Sbjct: 239 LYEALEEGHVRAAALDVFEKEP-PTDNPLFDLDN 271 |
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 100 bits (251), Expect = 6e-23 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 6/92 (6%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 LD ++D + V LTK T LIG + + MKP AIL+N RG ++D+EAL E LK++ Sbjct: 185 LDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKER 244 Query: 374 KIGGAGLDVMIPEP------LPADHPLVQLDN 399 I GA +DV P P+ +P +L N Sbjct: 245 PIAGAAIDVWWRYPSRGDPVAPSRYPFHELPN 276 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 100 bits (250), Expect = 1e-22 Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 5/118 (4%) Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366 LG + V L+ L ESD I + T T LI R+ F+LMKP A+LINT+RG ++D EAL Sbjct: 180 LGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTEAL 239 Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPLVQLDN 424 V LK+ K+ GAGLDV+ E + + + ++ L ++ ADH L++ N Sbjct: 240 VRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLL-----ADHALLRKPN 292 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
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Score = 99.2 bits (248), Expect = 2e-22 Identities = 39/86 (45%), Positives = 51/86 (59%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 LD + E+D + LT++T L F MK A+ IN RG +D++AL+E LK+K Sbjct: 183 LDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNK 242 Query: 374 KIGGAGLDVMIPEPLPADHPLVQLDN 399 +I GA LDV EPLP D PL LDN Sbjct: 243 QIRGAALDVFEEEPLPKDSPLWDLDN 268 |
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 98.2 bits (245), Expect = 3e-22 Identities = 40/88 (45%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 308 GAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366 G + L L A SD + + LT +T LI + KP LIN +RGGL+DQEAL Sbjct: 175 GVEAAADLAELFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEAL 234 Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPL 394 +E L +I A LDV PEPLP HPL Sbjct: 235 LEALDSGRISLASLDVTDPEPLPEGHPL 262 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
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Score = 96.6 bits (241), Expect = 2e-21 Identities = 42/128 (32%), Positives = 58/128 (45%), Gaps = 6/128 (4%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 NLK I G D+++L RGI V + ++ +VAE + L +A++RR + Sbjct: 65 PNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADAS 124 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 GEW K L G TVGI+GLG IG AK LKAF + K++ E Sbjct: 125 QRRGEWDRKAFRGT-----ELAGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDPYSPRE 178 Query: 739 GQLFSLVY 746 V Sbjct: 179 RAGVDGVV 186 |
Length = 324 |
>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 96.0 bits (239), Expect = 2e-21 Identities = 39/97 (40%), Positives = 61/97 (62%) Query: 300 ERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 359 E + P + + ++D + + C LT+ T+ LI + +LMKPTA LINT RG Sbjct: 177 EHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGP 236 Query: 360 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQ 396 L+D++AL++ L++ KI GA LDV++ EP D+PL+Q Sbjct: 237 LVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQ 273 |
Length = 314 |
>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 95.5 bits (238), Expect = 3e-21 Identities = 40/95 (42%), Positives = 59/95 (62%) Query: 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363 G +PLD L + D + + C LT+ T LIG ++ +LMKP A+LINT+RGGL+D+ Sbjct: 181 GRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDE 240 Query: 364 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD 398 +AL + L+ +GGA DV+ EP +PL+ D Sbjct: 241 QALADALRSGHLGGAATDVLSVEPPVNGNPLLAPD 275 |
Length = 317 |
>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 95.3 bits (237), Expect = 3e-21 Identities = 63/251 (25%), Positives = 120/251 (47%), Gaps = 15/251 (5%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 + K+I + S G DH+++ I + + G S +VAE+ L +A ++ E Sbjct: 48 KKTKMIQSLSAGVDHIDVSGIPENVVLCSNAGAYSI-SVAEHAFALLLAWAKNICENNYN 106 Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 + +G + T + L ++GI+G G IG A L KAF ++ YT V + Sbjct: 107 MKNGNFKQSPTKL-------LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDG 159 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 +++ + P D + +SDF+ ++ LT +T +I K SL + ++N +R ++D+ Sbjct: 160 ISSIYME--PEDIM-KKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSA-TKAVRDEKSSTSA 1112 ++ FL++ DV EP+ + DN +L+PH + + + + + Sbjct: 217 NDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAF 273 Query: 1113 ENIIRGYKGEP 1123 ENI ++G+P Sbjct: 274 ENIKNFFEGKP 284 |
Length = 303 |
>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
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Score = 95.0 bits (237), Expect = 4e-21 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Query: 69 MPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIR 128 + + +E K AL+ V EVL+ + LKVIA VG D++ LD RGI Sbjct: 27 LLTEELLEAAKDADALIVRSTTPVTAEVLEAA-PGLKVIARRGVGVDNIDLDAATERGIL 85 Query: 129 VGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIAR 164 V V S+++VAE +GL +A++RR + + Sbjct: 86 VTNVPGYSTESVAELTVGLILALARRIPEADASVRA 121 |
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 94.6 bits (236), Expect = 8e-21 Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 1/89 (1%) Query: 294 FGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILI 353 Y+ + A+ V LDTL ESD I + LT++T LI ++ + MK I+I Sbjct: 170 LAYDPYPNEE-VKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIII 228 Query: 354 NTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 NT+RG L+D EAL+E L+ KIGGA LDV Sbjct: 229 NTARGELIDTEALIEGLESGKIGGAALDV 257 |
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
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Score = 92.0 bits (229), Expect = 1e-19 Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 34/224 (15%) Query: 877 KVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS 936 + + T ++G DHL+L GI S ++ V +Y +G + ++ R EG Sbjct: 60 RFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER--EG------ 111 Query: 937 GEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTA 996 + L T G+VG G++G ++L+ ++ R + EG Sbjct: 112 ---------------VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAEGDG 156 Query: 997 LGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 V L+ + E D I + LTK+ T L+ + ++P A L+N SRG ++D Sbjct: 157 ---DFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVL-TPH 1095 +AL E L + A LDV EP D L D C + TPH Sbjct: 214 NQALREALLSGEDLDAVLDVWEGEPQ-IDLEL--ADLCTIATPH 254 |
Length = 381 |
>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 90.0 bits (224), Expect = 3e-19 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 317 LCAESDFIFVTCALTKDTEQLIGRKQFSLM-KPTAILINTSRGGLLDQEALVEFLKDKKI 375 L + D + V+ LT T+ L+G ++F ++ K + N +RG L+D +ALV L+ +I Sbjct: 207 LRQDLDLLVVSLPLTPATKHLLGAEEFEILAKRKTFVSNIARGSLVDTDALVAALESGQI 266 Query: 376 GGAGLDVMIPEPLPADHPLVQLDNC 400 GA LDV PEPLPADHPL N Sbjct: 267 RGAALDVTDPEPLPADHPLWSAPNV 291 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334 |
>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
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Score = 89.3 bits (222), Expect = 4e-19 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 312 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLK 371 V L+ L SD I + L + T+ LI K+ L+K AILIN RGG+++++ L + L Sbjct: 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD 247 Query: 372 DKKIGGAGLDVMIPEPLPADHPLVQLDN 399 +K I AGLDV+ EP+ +HPL+ + N Sbjct: 248 EKDI-YAGLDVLEKEPMEKNHPLLSIKN 274 |
Length = 311 |
>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
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Score = 88.4 bits (220), Expect = 9e-19 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 5/123 (4%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 +R L PE L +L+ +F+++ Y E+LK A++ + ++D EVL++ Sbjct: 8 TRKLPPEVLERLKE--KFEVERYEDDLTPDT--ELAERLKDADAVITFVNDRIDAEVLEK 63 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 LK+IAT S G+D++ L+ K RGI V V S++ VAE+ + L +A++RR + Sbjct: 64 -LPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGD 122 Query: 160 NWI 162 + Sbjct: 123 RRV 125 |
Length = 324 |
>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
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Score = 88.0 bits (219), Expect = 1e-18 Identities = 52/128 (40%), Positives = 68/128 (53%), Gaps = 7/128 (5%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 KNLK+I+ G DH++L K RGI V + S++ VAE IGLAI + R Sbjct: 68 KNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAA 127 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 + +G + +IG L G TVGIVG G IGL A+L KAF K+L SR KEE Sbjct: 128 VRAGG---TKAGLIGRE---LAGKTVGIVGTGAIGLRVARLFKAFG-CKVLAYSRSEKEE 180 Query: 739 GQLFSLVY 746 + + Y Sbjct: 181 AKALGIEY 188 |
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 87.6 bits (218), Expect = 1e-18 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 L+ L A +D+I + LT +T LI + + MKP AIL+N +RG ++D+EAL+E L + Sbjct: 186 LEELLATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEG 245 Query: 374 KIGGAGLDVMIPEPLPADHPLV 395 K+GG D P L P V Sbjct: 246 KLGGYVTDFPEPALLGH-LPNV 266 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 87.4 bits (217), Expect = 2e-18 Identities = 37/88 (42%), Positives = 48/88 (54%) Query: 295 GYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN 354 Y+ F G + V L+ L SD I + LT + +I + F LMK I+IN Sbjct: 171 AYDPFRNPELEDKGVKYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIIN 230 Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDV 382 T+RG L+D EAL+E L KI GAGLDV Sbjct: 231 TARGSLVDTEALIEALDSGKIFGAGLDV 258 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
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Score = 88.2 bits (219), Expect = 2e-18 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 1/103 (0%) Query: 292 HYFGYNWFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350 Y+ + LG L+ + ++ D + + C L +TE L ++ S MK A Sbjct: 189 LYYDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGA 248 Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 393 L+NT+RG + D+EA+ E L+ + G DV P+P P DHP Sbjct: 249 YLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHP 291 |
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 86.8 bits (216), Expect = 3e-18 Identities = 30/72 (41%), Positives = 43/72 (59%) Query: 312 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLK 371 L+ L ++D I + LTK+ LI + F+ MK AIL+N +RGGL+D +AL++ L Sbjct: 190 DSLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALD 249 Query: 372 DKKIGGAGLDVM 383 KI GA LD Sbjct: 250 SGKIAGAALDTY 261 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
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Score = 85.2 bits (212), Expect = 7e-18 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 317 LCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 L AESD + V C T L+ + + P +L+N +RG ++D+ AL+ L++ +I Sbjct: 189 LAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRIA 248 Query: 377 GAGLDVMIPEPLPADHPLVQLDN 399 GAGLDV EP L+ LDN Sbjct: 249 GAGLDVFENEPNVPA-ALLDLDN 270 |
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
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Score = 85.3 bits (212), Expect = 9e-18 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 LKVI + VG D++++ RGI V +V ++ VA++ + L +A++R+ + Sbjct: 64 PRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRA 123 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730 + +G W +G I L+G T+G+VG G IG AK KAF I Y Sbjct: 124 VRAGGWDWT----VGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAY 171 |
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 85.0 bits (211), Expect = 1e-17 Identities = 45/130 (34%), Positives = 65/130 (50%), Gaps = 6/130 (4%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRV-GSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 677 K LK+I S G DHL L + G+ V + G+ S VAE+ + L +A+++R E Sbjct: 59 KRLKLIQVPSAGVDHLPLERLPE-GVVVANNHGN--SPAVAEHALALILALAKRIVEYDN 115 Query: 678 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 + G W P L+G TVGI+G G+IG E A+LLKAF + I + ++ Sbjct: 116 DLRRGIW--HGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKED 173 Query: 738 EGQLFSLVYD 747 EG F Sbjct: 174 EGADFVGTLS 183 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 84.2 bits (209), Expect = 2e-17 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 L L E+D + + LT +T L+ + + M A+L+N +RG ++D +ALV L Sbjct: 177 LPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVAELASG 236 Query: 374 KIGGAGLDVMIPEPLPADHPLVQLDNC 400 ++ A LDV PEPLP HPL Sbjct: 237 RL-RAALDVTDPEPLPPGHPLWSAPGV 262 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 83.2 bits (207), Expect = 3e-17 Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 9/107 (8%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 LKVI VG D++++ ARGI V + ++ +VAE+ I L +A++R + Sbjct: 61 PRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQADAS 120 Query: 679 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAF 723 + +G+W K+ MG L+G T+GIVGLG IG E A+ +AF Sbjct: 121 LRAGKWDRKKF-------MGVELRGKTLGIVGLGRIGREVARRARAF 160 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 83.4 bits (207), Expect = 3e-17 Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 6/100 (6%) Query: 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363 G A Q+ L+ L AE+DF+ + T T+ +IG ++ + MK AILIN SRG ++D Sbjct: 178 GNAR--QVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDI 235 Query: 364 EALVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDN 399 +AL E L+ + GA +DV EP P PL L N Sbjct: 236 DALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPN 275 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
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Score = 82.3 bits (204), Expect = 1e-16 Identities = 56/233 (24%), Positives = 90/233 (38%), Gaps = 52/233 (22%) Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571 KPK+ +T +V E+L ++I+ ++ + R+ + + + L+ DR Sbjct: 1 KPKVVIT----HKVHPEVLELLKPHCEVISNQ-TDEPLSREELLRRCKDADGLMAFMPDR 55 Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631 +D LD LK+I GY Sbjct: 56 IDADFLDAC--------------------------------------PRLKIIACALKGY 77 Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691 D+ ++ ARGI V V + ++ AE IGL I + R G + + SG++ + Sbjct: 78 DNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGRHILAGDRFVRSGKFGGWRPKF 137 Query: 692 IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR---RVKEEGQL 741 G GL G TVGI+G+G +G A+ L F +LY EE L Sbjct: 138 YG---TGLDGKTVGILGMGALGRAIARRLSGFGA-TLLYYDPHPLDQAEEQAL 186 |
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
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Score = 81.8 bits (203), Expect = 1e-16 Identities = 30/81 (37%), Positives = 42/81 (51%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 LD A++D + LT +T ++ + + + A LIN RG L + L+ L Sbjct: 180 LDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALINVGRGPHLVEADLLAALDSG 239 Query: 374 KIGGAGLDVMIPEPLPADHPL 394 + GA LDV EPLPADHPL Sbjct: 240 HLSGAVLDVFEQEPLPADHPL 260 |
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 81.0 bits (201), Expect = 2e-16 Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 53/213 (24%) Query: 529 AFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTE 587 A E L E F++ P I ++ +EK++ L+ SR +V K+V+D + Sbjct: 13 AIEKLEEAGFEVDYEPL----IAKEELLEKIKDYDVLIVRSRTKVTKEVIDAA------- 61 Query: 588 DFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVG 647 KNLK+I VG D++++ K +GI+V Sbjct: 62 -------------------------------KNLKIIARAGVGLDNIDVEYAKKKGIKVI 90 Query: 648 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVG 705 + SS++VAE IGL ++++R + + G+W K+ G L+G T+G Sbjct: 91 NTPGASSNSVAELVIGLMLSLARFIHRANREMKLGKWNKKK-------YKGIELRGKTLG 143 Query: 706 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 I+G G IG E AK+ +A + ++ K+E Sbjct: 144 IIGFGRIGREVAKIARALGM-NVIAYDPYPKDE 175 |
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 80.8 bits (200), Expect = 4e-16 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 9/106 (8%) Query: 620 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 679 LK+I T S G+DH++L + RGI V +V TVAE+ L +A+SR+ +E + Sbjct: 63 RLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERT 122 Query: 680 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAF 723 G+++ + G L G T+G+VG G IG A++ + F Sbjct: 123 RRGDFSQA-------GLRGFELAGKTLGVVGTGRIGRRVARIARGF 161 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
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Score = 80.0 bits (198), Expect = 5e-16 Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 2/126 (1%) Query: 41 RLLVPESLSKLRFNSRFDIDTYPV-SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 ++LV E L + + V + D L AL+ + V EVL + Sbjct: 1 KVLVLEPLFPPEALEALEATGFEVIVADDLLADELEALLADADALIVSSTTPVTAEVLAK 60 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 + LK I G D++ LD K RGI V V +++ VAE+ +GL +A+ RR + Sbjct: 61 A-PKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRAD 119 Query: 160 NWIARL 165 + R Sbjct: 120 AAVRRG 125 |
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
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Score = 79.9 bits (198), Expect = 7e-16 Identities = 50/231 (21%), Positives = 85/231 (36%), Gaps = 55/231 (23%) Query: 514 KPK-LFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLR-----GCSALLCT 567 KPK L L ++ ++ L + ++I + R+ FIE L+ A+ T Sbjct: 1 KPKVLLLGDPIHAH-DEWKELSSIAEVIYPTS----GTREEFIEALKEGKYGDFVAIYRT 55 Query: 568 SRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTF 627 + E+ L +LK+I Sbjct: 56 F-GSAGET-------GPFDEELISP------------------------LPPSLKIIAHA 83 Query: 628 SVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW--- 684 GYD +++ + RGI+V + + A+ + L + R F + +G+W Sbjct: 84 GAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSARAGKWRGF 143 Query: 685 -ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 L H +G T+GI+GLG IG A+ AF + KI+Y +R Sbjct: 144 LDLTLAH-------DPRGKTLGILGLGGIGKAIARKAAAFGM-KIIYHNRS 186 |
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 79.4 bits (197), Expect = 8e-16 Identities = 40/121 (33%), Positives = 66/121 (54%), Gaps = 2/121 (1%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 NLK+I + GY++++L K RGI V +V S+D+VA++ L +A++R Sbjct: 64 PNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDV 123 Query: 679 ITSGEWALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 + +GEW I+ L G T+GI+G GNIG A++ +AF + K+L+ R+ Sbjct: 124 VKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARIARAFGM-KVLFAERKGAP 182 Query: 738 E 738 Sbjct: 183 P 183 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
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Score = 79.6 bits (197), Expect = 8e-16 Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 AL + V LD L SDF+ + LT DT LI + + MKP A+L+N RG ++D+ A Sbjct: 185 ALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAA 244 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLP-ADHP 393 + E LK +GG DV E D P Sbjct: 245 VAEALKSGHLGGYAADVFEMEDWARPDRP 273 |
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 78.8 bits (194), Expect = 2e-15 Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 51/278 (18%) Query: 870 PKRTE-NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 928 PK +K I + G+D +L K I + +V S +T+AEY++ +A+ + RRF Sbjct: 63 PKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFP 122 Query: 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 + + + + ++ + + P +K TV I+G G IG TAK+ F Sbjct: 123 DIERRVQAHDFTWQAEIMSKP----VKNMTVAIIGTGRIGAATAKIYAGFG--------- 169 Query: 989 RVKEEGTALGAQLVPLDTL------------CAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 T P L ++D I + K++ L + F + Sbjct: 170 -----ATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHV 224 Query: 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVM---------------IPEPLPAD 1081 K AILVN +RG +++ L+ + D + GA +D I + + Sbjct: 225 KKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLE 284 Query: 1082 HPLVQLDNCVLTPHTS-SATKAVRD--EKSSTSAENII 1116 L++ + ++TPH + + +AV++ E +A ++I Sbjct: 285 --LIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVI 320 |
Length = 330 |
>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Score = 78.7 bits (195), Expect = 4e-15 Identities = 41/100 (41%), Positives = 57/100 (57%), Gaps = 6/100 (6%) Query: 306 ALG-AQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363 LG A+ V L+ L A+SD + + T T+ +IG ++ +LMKP AILIN SRG ++D Sbjct: 187 PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246 Query: 364 EALVEFLKDKKIGGAGLDVMIPEPLPADH----PLVQLDN 399 +AL + LK + GA +DV EP PL LDN Sbjct: 247 DALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDN 286 |
Length = 409 |
>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 77.8 bits (192), Expect = 6e-15 Identities = 31/82 (37%), Positives = 47/82 (57%) Query: 312 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLK 371 V D+L + D + + C L +TE L S MK + L+NT+RG ++D++A+V L+ Sbjct: 240 VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE 299 Query: 372 DKKIGGAGLDVMIPEPLPADHP 393 + G DV P+P PADHP Sbjct: 300 SGHLAGYAGDVWFPQPAPADHP 321 |
Length = 385 |
>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases | Back alignment and domain information |
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Score = 76.9 bits (189), Expect = 6e-15 Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 30/219 (13%) Query: 875 NLKVITTFSVGYDHLELHE-IKARGIRV----GSVGHISSDT---VAEYNIGLAIAVSRR 926 +++ T+++G DH +L E + G+ G + + E ++ Sbjct: 87 GDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEV 146 Query: 927 FQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYT 986 Q GR + G TV +VG G +G E A++L+ +++L T Sbjct: 147 QQPGRL----------------GGAPDVAGKTVVVVGAGVVGKEAAQMLRGLG-AQVLIT 189 Query: 987 SRRV---KEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTE-QLIGRKQFSLMKPTAIL 1042 V ++ G + L+ AE+D I T L L+ + MKP +++ Sbjct: 190 DINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMKPGSVI 249 Query: 1043 VNTSRGGLLDQEALVEF-LKDKKIGGAGLDVMIPEPLPA 1080 VN + G + +AL L++ DV +P P A Sbjct: 250 VNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGPGCA 288 |
The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310 |
>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 75.7 bits (187), Expect = 1e-14 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 4/112 (3%) Query: 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGE 102 + E+L +L F++ Y G + ++ +E++ AL+ VDKE++D + Sbjct: 9 IPKEALEELE--ENFEVTYYD-GLGLISKEELLERIADYDALITPLSTPVDKEIIDA-AK 64 Query: 103 NLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRR 154 NLK+IA + G D++ +D K +GI V VS++ AE GL +A++RR Sbjct: 65 NLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARR 116 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 75.3 bits (186), Expect = 2e-14 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 1/112 (0%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 LK+I G +++++ RGI V + +++ VAE+ +GL +A +R Sbjct: 66 PKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAA 125 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730 + GEW K + L+G TVGIVG G IG AK LKAF ++Y Sbjct: 126 LKDGEW-RKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVY 176 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 75.4 bits (186), Expect = 2e-14 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSV-GHISSDTVAEYNIGLAIAVSRRFQEGRK 677 LK+I +GYD+++L G+ V V G + D VAE+ + L + V R+ + + Sbjct: 68 DGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQASE 127 Query: 678 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 + G+W + + L G TVGI+G GNIG A++LK +K+L V E Sbjct: 128 AVKEGKWTERANFVGHE----LSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYVSE 183 Query: 738 E 738 E Sbjct: 184 E 184 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
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Score = 75.8 bits (187), Expect = 2e-14 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 KNLK+ T +G DH++L RGI V V + +VAE+ + + + + R + G + Sbjct: 83 KNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQ 142 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 G W + + L+G TVG VG G IGL + LK F V +LY R Sbjct: 143 AIEGGWNVAD---VVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDV-HLLYYDR 193 |
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 75.5 bits (186), Expect = 3e-14 Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 5/123 (4%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 NLK+ T +G DH++L GI V V +S +VAE+ + + +A+ R ++ + Sbjct: 113 PNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQ 172 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR-RVKE 737 G W + L+G TVGIVG G IGL + LK F V K+ YT R R+ E Sbjct: 173 AVEGGWNIAD---CVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPE 228 Query: 738 EGQ 740 E + Sbjct: 229 EVE 231 |
Length = 385 |
>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
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Score = 74.0 bits (183), Expect = 4e-14 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 83 ALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAE 142 A++ N + ++ L++IA+F VG+D + LD ++RGIRV V +D VA+ Sbjct: 45 AVVTNGETGLSAALIAAL-PALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVAD 103 Query: 143 YNIGLAIAVSRRFQQRHNWI 162 +GL +AV RR ++ Sbjct: 104 LAVGLLLAVLRRIPAADRFV 123 |
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
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Score = 73.9 bits (182), Expect = 5e-14 Identities = 28/87 (32%), Positives = 41/87 (47%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 L ESD + T I + M A+ IN +RGG + +EA ++ L ++ Sbjct: 187 LLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAALDALLEE 246 Query: 374 KIGGAGLDVMIPEPLPADHPLVQLDNC 400 I A LDV+ EP P + PL+ L N Sbjct: 247 GIAAAALDVVEEEPPPVNSPLLDLPNV 273 |
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 73.7 bits (182), Expect = 6e-14 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 61 TYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLD 120 + + IE LK ++ + +EVL LKVI+ + VG+D++ L+ Sbjct: 28 VLNPLGRPLTEEELIELLKDADGVIAG-LDPITEEVLAA-APRLKVISRYGVGYDNIDLE 85 Query: 121 EIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160 K RGI V +S++VAE IGL +A++R+ Q Sbjct: 86 AAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADR 125 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 73.9 bits (182), Expect = 6e-14 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 9/114 (7%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 LK I+ + GYD+++L K GI V +V S + VAE+ I L +A+ R RK Sbjct: 66 PGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRN----RKY 121 Query: 679 IT--SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730 I L+ +IG + TVG+VG G IG A+ K F + I Y Sbjct: 122 IDERDKNQDLQDAGVIGRELEDQ---TVGVVGTGKIGRAVAQRAKGFGMKVIAY 172 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
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Score = 73.3 bits (181), Expect = 9e-14 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 7/129 (5%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 L+ I + S G D L E+ R + + + I +AEY +G +A +R+ + Sbjct: 58 PRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARN 117 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 W ++ + L G TV IVGLG+IG E A+ KAF + +++ R + Sbjct: 118 QAERRW--QRRGPVRE----LAGKTVLIVGLGDIGREIARRAKAFGM-RVIGVRRSGRPA 170 Query: 739 GQLFSLVYD 747 + VY Sbjct: 171 PPVVDEVYT 179 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 72.9 bits (180), Expect = 1e-13 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%) Query: 310 QLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 V L+ L AE+D I + LT+D T L+ + +KP ILIN SRG ++D +A Sbjct: 156 GFVSLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDNQA 215 Query: 366 LVEFLKDKKIGGAGLDVMIPEP 387 L+ L+ K LDV EP Sbjct: 216 LLALLQRGKDLRVVLDVWENEP 237 |
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
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Score = 69.4 bits (171), Expect = 2e-13 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 662 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLK 721 + L +A++RR E + + +G W L G TVGI+GLG IG A+ LK Sbjct: 1 LALLLALARRIPEADRQVRAGRWRPDALLGRE-----LSGKTVGIIGLGRIGRAVARRLK 55 Query: 722 AFKVSKILYTSRRVKEE 738 AF + K++ R K E Sbjct: 56 AFGM-KVIAYDRYPKAE 71 |
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 70.8 bits (174), Expect = 7e-13 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 2/93 (2%) Query: 295 GYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTK-DTEQLIGRKQFSLMKPTAILI 353 GY+ + + V LD L +SD I + K ++LI ++ S MK AILI Sbjct: 173 GYDIYPSDAAKDV-VTFVSLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILI 231 Query: 354 NTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 386 NT+RG L D+EA++E L+ K+ G G DV+ E Sbjct: 232 NTARGELQDEEAILEALESGKLAGFGTDVLNNE 264 |
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
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Score = 70.1 bits (172), Expect = 1e-12 Identities = 30/80 (37%), Positives = 49/80 (61%) Query: 320 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAG 379 E+D + + C LTK+T ++ + S MK A+L+N +RGGLLD +A++ L+ +GG Sbjct: 226 EADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLA 285 Query: 380 LDVMIPEPLPADHPLVQLDN 399 +DV EP D P+++ N Sbjct: 286 IDVAWSEPFDPDDPILKHPN 305 |
Length = 347 |
>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 68.7 bits (169), Expect = 2e-12 Identities = 36/113 (31%), Positives = 63/113 (55%), Gaps = 6/113 (5%) Query: 45 PESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENL 104 ++ KL + F++D P+ ++ +EK+K L+ KV KEV+D +NL Sbjct: 11 EIAIEKLE-EAGFEVDYEPLI----AKEELLEKIKDYDVLIVRSRTKVTKEVIDA-AKNL 64 Query: 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 K+IA VG D++ ++ K +GI+V SS++VAE IGL ++++R + Sbjct: 65 KIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHR 117 |
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
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Score = 69.1 bits (170), Expect = 2e-12 Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 8/104 (7%) Query: 620 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 679 NLK++ T + ++L K RGI V G AE L +A++R E + Sbjct: 69 NLKLLVTTGMRNASIDLAAAKERGIVVCGTGG-GPTATAELTWALILALARNLPEEDAAL 127 Query: 680 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 723 +G W QT + G GL G T+GIVGLG IG A++ +AF Sbjct: 128 RAGGW---QTTL-G---TGLAGKTLGIVGLGRIGARVARIGQAF 164 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 68.9 bits (169), Expect = 2e-12 Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 23/170 (13%) Query: 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDF 1013 L G VGI+GLG G A L F + + Y SR K + A G + +PL+ L D Sbjct: 136 LTGLKVGIIGLGTTGQMIADALSFFG-ADVYYYSRTRKPDAEAKGIRYLPLNELLKTVDV 194 Query: 1014 IFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK--------I 1065 I TC L K+ L+G ++F L+ IL NTS G + EAL ++LK Sbjct: 195 IC-TC-LPKNV-ILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKASGYNIFDCDTA 251 Query: 1066 GGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENI 1115 G G D L++ N + T ++ T+ + S N+ Sbjct: 252 GALG-----------DEELLRYPNVICTNKSAGWTRQAFERLSQKVLANL 290 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294 |
>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 68.6 bits (168), Expect = 4e-12 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 3/97 (3%) Query: 301 RSNGTALGAQLVPLDTLCA---ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 357 RS G G +V D L E+D + + T T + + + + A ++N R Sbjct: 174 RSAGERAGFPVVAEDELPELLPETDVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGR 233 Query: 358 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPL 394 G +D++ALV L+ ++GGA LDV EPLPA PL Sbjct: 234 GATVDEDALVAALESGRLGGAALDVTATEPLPASSPL 270 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
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Score = 67.0 bits (164), Expect = 1e-11 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 70 PRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRV 129 + +E L AL+ + V +EVL NLK I G D++ L+ RGI V Sbjct: 35 DEEELLEALADADALIVSV-TPVTEEVLAA-APNLKAIGRAGAGVDNIDLEAATKRGILV 92 Query: 130 GTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIAR 164 ++ +VAE + L +A++RR R Sbjct: 93 VNAPGGNAISVAELVLALLLALARRIPDADASQRR 127 |
Length = 324 |
>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
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Score = 67.1 bits (164), Expect = 1e-11 Identities = 29/115 (25%), Positives = 64/115 (55%), Gaps = 4/115 (3%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 +R + + L F+++ + E +PR++ +EK++ AL+ +++D EV + Sbjct: 8 TREIPENGIEMLE--EHFEVEVWE-DEREIPREVLLEKVRDVDALVTMLSERIDCEVFEA 64 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRR 154 + L+++A ++VG+D++ ++E RGI V V ++ A++ L +A +RR Sbjct: 65 A-PRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARR 118 |
Length = 333 |
>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated | Back alignment and domain information |
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Score = 67.1 bits (164), Expect = 1e-11 Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 29/246 (11%) Query: 876 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935 +K I S G+D +L + + +V S +++AE+ + AI + R F + + + Sbjct: 70 IKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVR 129 Query: 936 SGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKIL----YTSRR 989 + P I+ +K V ++G G IGL AK+ S ++ + + + Sbjct: 130 ------EHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK 183 Query: 990 VKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 ++ +D + + TK L F K A+ VN +RG Sbjct: 184 AATYVDYKDT----IEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEP--LPADH-----------PLVQLDNCVLTPHT 1096 L+D +AL++ L + I GA LD E P+D L+ ++ +LTPH Sbjct: 240 LVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHI 299 Query: 1097 SSATKA 1102 + T A Sbjct: 300 AFYTDA 305 |
Length = 332 |
>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
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Score = 66.3 bits (162), Expect = 2e-11 Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 6/123 (4%) Query: 620 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 679 L+ +T SVGYD+ ++ + AR I + + ++TVA+ + L ++ +RR E + + Sbjct: 66 KLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERV 125 Query: 680 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 +GEW T IGP+ G + T+GIVG+G IG+ A+ ILY +RR + Sbjct: 126 KAGEW----TASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK 181 Query: 738 EGQ 740 E + Sbjct: 182 EAE 184 |
Length = 323 |
>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 65.4 bits (160), Expect = 4e-11 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Query: 89 HQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLA 148 + ++D EVL++ LK+IAT S G DH+ L+ + RGI V V TVAE+ L Sbjct: 50 YSRLDAEVLEKL-PRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALL 108 Query: 149 IAVSRRFQQRHNWIARLSSFAEIQTRALD 177 +A+SR+ ++ R F++ R + Sbjct: 109 LALSRKLREAIE-RTRRGDFSQAGLRGFE 136 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 64.6 bits (158), Expect = 6e-11 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 4/93 (4%) Query: 72 DIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGT 131 D E KG A+L K+D E+LD++ LK I+ + G+D++ LD K GI V Sbjct: 37 DETAELAKGADAILTAFTDKIDAELLDKA-PGLKFISLRATGYDNIDLDYAKELGIGVTN 95 Query: 132 VGPVSSDTVAEYNIGLAIAVSR---RFQQRHNW 161 V S + VAE+ I L +A+ R +R Sbjct: 96 VPEYSPNAVAEHTIALILALLRNRKYIDERDKN 128 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
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Score = 64.9 bits (159), Expect = 6e-11 Identities = 36/107 (33%), Positives = 55/107 (51%), Gaps = 10/107 (9%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRV--GSVGHISSDTVAEYNIGLAIAVSRRFQEGR 676 KNLK I +S G D+L L IK +GI + S H S +AE+ +G + + + ++ Sbjct: 59 KNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIH--SIPIAEWIVGYILEIYKGLKKAY 116 Query: 677 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 723 K +W + + + L G T+ +G G+IG E AK LKAF Sbjct: 117 KNQKEKKWKMDSSL------LELYGKTILFLGTGSIGQEIAKRLKAF 157 |
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 64.5 bits (157), Expect = 1e-10 Identities = 25/80 (31%), Positives = 45/80 (56%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 LD + + D + + LT+ T + +++ + MK +++N +RG ++D +A+ + Sbjct: 249 LDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG 308 Query: 374 KIGGAGLDVMIPEPLPADHP 393 IGG G DV P+P P DHP Sbjct: 309 HIGGYGGDVWYPQPAPKDHP 328 |
Length = 386 |
>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
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Score = 62.9 bits (154), Expect = 2e-10 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 74 FIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 IE ALL + V EV++ LKVI + VG D++ + RGI V V Sbjct: 38 LIEAAADADALLVQ-YAPVTAEVIEAL-PRLKVIVRYGVGVDNVDVAAATERGIPVCNVP 95 Query: 134 PVSSDTVAEYNIGLAIAVSRR 154 ++ VA++ + L +A++R+ Sbjct: 96 DYCTEEVADHALALILALARK 116 |
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 63.7 bits (155), Expect = 2e-10 Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 KNL+++ T +G DH++L A G+ V V + +VAE + + + R F G Sbjct: 120 KNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQ 179 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 + SGEW + I L+G TVG VG G IG + LK F +LY R Sbjct: 180 VVSGEWNVAG---IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDR 230 |
Length = 386 |
>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 63.1 bits (154), Expect = 2e-10 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 25/157 (15%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 +K + T +VG++H++L K G ++ V S + +AE LA+ +SR Sbjct: 67 YGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAY---- 122 Query: 679 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKI---LYTSR 733 + + + P + ++ +TVGI+G G IGL AKL K I +Y S Sbjct: 123 --TASRTANKNFKVDPFMFSKEIRNSTVGIIGTGRIGLTAAKLFKGLGAKVIGYDIYPSD 180 Query: 734 RVKEEGQLFSLVYDFCRYSIGGVTIKRLVKKTFILSF 770 K D + V++ L+KK+ I+S Sbjct: 181 AAK----------DVVTF----VSLDELLKKSDIISL 203 |
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
---|
Score = 63.9 bits (156), Expect = 3e-10 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 9/114 (7%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 LKVI VG D++++ ARGI V + ++ + AE+ + + +A +R + Sbjct: 61 PKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADAS 120 Query: 679 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730 + GEW K MG L G T+G++GLG IG AK KAF + + Y Sbjct: 121 LKEGEWDRKA-------FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY 167 |
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 62.0 bits (152), Expect = 4e-10 Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 13/125 (10%) Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95 ++LV + + + LR + ++D P + + + + AL+ KV E Sbjct: 1 KVLVTDPIDEEGLELLR-EAGIEVDVAP----GLSEEELLAIIADADALIVRSATKVTAE 55 Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVS-SDTVAEYNIGLAIAVSRR 154 V++ LKVI VG D++ ++ +RGI V P + + +VAE+ I L +A++R Sbjct: 56 VIEA-APRLKVIGRAGVGVDNIDVEAATARGILV-VNAPGANTISVAEHTIALMLALARN 113 Query: 155 FQQRH 159 Q Sbjct: 114 IPQAD 118 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 62.0 bits (151), Expect = 5e-10 Identities = 28/105 (26%), Positives = 60/105 (57%), Gaps = 3/105 (2%) Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680 LK+I + G ++++L + RGI V + + +VA++ + L +A++ R + ++ + Sbjct: 67 LKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVA 126 Query: 681 SGEWALKQTHIIGPN--IMGLKGATVGIVGLGNIGLETAKLLKAF 723 +G W + + + I+ L+G T+G++G G +G A+L +AF Sbjct: 127 AGRWQ-QSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAF 170 |
Length = 317 |
>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 62.2 bits (152), Expect = 5e-10 Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 14/112 (12%) Query: 620 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 679 +K I S G D ++L K G+++ +V S +AE+ + A+ + R E + + Sbjct: 68 GIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRV 127 Query: 680 TSGE--WALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAF--KV 725 G+ WA P ++G ++ TVGI+G G IG AK+ K F KV Sbjct: 128 AKGDFRWA--------PGLIGREIRDLTVGIIGTGRIGSAAAKIFKGFGAKV 171 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
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Score = 61.9 bits (151), Expect = 5e-10 Identities = 38/117 (32%), Positives = 68/117 (58%), Gaps = 6/117 (5%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 NLK+I + G +++++ K +GI V +V S+++VA++ + +++ R + Sbjct: 62 PNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRY 121 Query: 679 ITSGEWALKQ--THIIGPNIMG-LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 + SGE++ THI P +G +KG GI+GLG IG AK+ +AF +K++Y S Sbjct: 122 VKSGEYSESPIFTHISRP--LGEIKGKKWGIIGLGTIGKRVAKIAQAFG-AKVVYYS 175 |
Length = 311 |
>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
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Score = 62.2 bits (151), Expect = 6e-10 Identities = 30/68 (44%), Positives = 42/68 (61%) Query: 320 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAG 379 E+D I + L K T LI +++ +LMK A+L+N SRG ++D+ ALVE LK + G Sbjct: 236 EADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVG 295 Query: 380 LDVMIPEP 387 LDV EP Sbjct: 296 LDVFEDEP 303 |
Length = 386 |
>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 60.9 bits (149), Expect = 2e-09 Identities = 43/113 (38%), Positives = 58/113 (51%), Gaps = 19/113 (16%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRV-----GSVGHISSDTVAEYNIGLAIAVSRRFQ 673 KNLKVI VG D++++ RGI V G+ IS AE+ I L +A++R Sbjct: 63 KNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNT--IS---AAEHTIALMLALARNIP 117 Query: 674 EGRKCITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFK 724 + + +G+W K MG L G T+GI+GLG IG E AK KAF Sbjct: 118 QAHASLKAGKWERK-------KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFG 163 |
Length = 526 |
>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 60.5 bits (148), Expect = 2e-09 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 9/104 (8%) Query: 622 KVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS 681 K+I G+++++L K GI V V S VAE+ + L +A++R+ + Sbjct: 70 KLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVRE 129 Query: 682 GEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAF 723 G ++L ++G L G TVG++G G IG A++LK F Sbjct: 130 GNFSLD-------GLLGFDLHGKTVGVIGTGKIGQAFARILKGF 166 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 60.3 bits (147), Expect = 2e-09 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 11/119 (9%) Query: 622 KVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS 681 K I+T S+GYDH++L K GI+V +V + S ++VA+Y + L + R++++ K Sbjct: 70 KYISTRSIGYDHIDLDAAKELGIKVSNVTY-SPNSVADYTVMLMLMALRKYKQIMKRAEV 128 Query: 682 GEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 +++L + G L+ TVG++G G IG K L F KIL EE Sbjct: 129 NDYSL-------GGLQGRELRNLTVGVIGTGRIGQAVIKNLSGFG-CKILAYDPYPNEE 179 |
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 60.6 bits (148), Expect = 2e-09 Identities = 44/202 (21%), Positives = 76/202 (37%), Gaps = 68/202 (33%) Query: 529 AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTED 588 A E+ + ++ P R+I E L+ LL S +V++ +L+ S Sbjct: 11 AEELFSPLGEVTYLPG------REITAEDLKDADVLLVRSVTKVNEALLEGS-------- 56 Query: 589 FFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGS 648 +K + T ++G DH++ +K RGI + Sbjct: 57 -------------------------------KVKFVGTATIGTDHIDTDYLKERGIGFAN 85 Query: 649 VGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVG 708 ++++VAEY + A+ Q LKG TVGIVG Sbjct: 86 APGCNANSVAEY---VLSALLVLAQRQGF--------------------SLKGKTVGIVG 122 Query: 709 LGNIGLETAKLLKAFKVSKILY 730 +GN+G A+ L+A ++ +L Sbjct: 123 VGNVGSRLARRLEALGMNVLLC 144 |
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 59.5 bits (145), Expect = 3e-09 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 638 EIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIM 697 + RGI V S +++ VAE+ + + RR +G T G Sbjct: 90 AVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAGRDWGWPTRRGGR--- 146 Query: 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 730 GL G TVGIVG G IG +LL+ F + ++Y Sbjct: 147 GLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVY 179 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
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Score = 59.9 bits (145), Expect = 3e-09 Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 46/238 (19%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 + +K + T + G DH++ +K GI + ++ V EY + ++ R Sbjct: 57 KPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------- 109 Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-- 991 + L TVGIVG+GN+G L+A + +L R Sbjct: 110 ----------------DGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRG 153 Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKD---------TEQLIGRKQFSLMKPTAIL 1042 +EG LD L E+D + L KD E+LI +KP AIL Sbjct: 154 DEG-----DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRS-----LKPGAIL 203 Query: 1043 VNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSAT 1100 +N RG ++D AL+ L + + LDV EP L ++D + TPH + T Sbjct: 204 INACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD--IGTPHIAGYT 259 |
Length = 378 |
>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
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Score = 58.9 bits (144), Expect = 4e-09 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 5/55 (9%) Query: 812 NGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865 GEW T ++G L G T+GIVG+G IG A+ K F + KILY +R+ Sbjct: 126 AGEWKGWSPTLLLG---TDLHGKTLGIVGMGRIGQAVARRAKGFGM-KILYHNRS 176 |
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 59.2 bits (144), Expect = 4e-09 Identities = 28/75 (37%), Positives = 44/75 (58%) Query: 309 AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVE 368 A+ V L+TL E+D + + LT +T ++ ++ S K INT+RG ++ + LV+ Sbjct: 178 AEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVK 237 Query: 369 FLKDKKIGGAGLDVM 383 LK KI GA LDV+ Sbjct: 238 ALKSGKILGACLDVL 252 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
---|
Score = 58.8 bits (143), Expect = 5e-09 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 17/152 (11%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 NLK I G ++++L K +GI + + + D V E+ +G+ +A+ + + Sbjct: 61 TNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQE 120 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 + +G W + G + L G TVGI+G GN+G AK L F I Y + + Sbjct: 121 VRNGIWDREGNR--G---VELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNFGD 175 Query: 739 GQLFSLVYDFCRYSIGGVTIKRLVKKTFILSF 770 + V+++ L K+ ILS Sbjct: 176 --------AYAEQ----VSLETLFKEADILSL 195 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 57.6 bits (140), Expect = 1e-08 Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 10/112 (8%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 +LK I G +++++ RGI V + +++ VAE I + +A+SR + K Sbjct: 49 PSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQAIKW 108 Query: 679 ITSGEWAL-------KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 723 +T+G+ + +G L+G T+G++GLGNIG A A Sbjct: 109 VTNGDGDDISKGVEKGKKQFVGT---ELRGKTLGVIGLGNIGRLVANAALAL 157 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
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Score = 58.3 bits (141), Expect = 1e-08 Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 6/120 (5%) Query: 622 KVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITS 681 K + +VGY+++++ GI VG+ + ++T AE L++A +RR E + + + Sbjct: 88 KAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147 Query: 682 GEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL-KAFKVSKI---LYTSRRVKE 737 G + H+ N+ LKG TVG++G G IG A+++ + FK++ I LY S R+++ Sbjct: 148 GLYEGWLPHLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEK 205 |
Length = 386 |
>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
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Score = 58.5 bits (142), Expect = 1e-08 Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 4/80 (5%) Query: 312 VPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALV 367 V L+ + E D I + LTK+ T L+ + ++P A LIN SRG ++D +AL Sbjct: 159 VSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALR 218 Query: 368 EFLKDKKIGGAGLDVMIPEP 387 E L + A LDV EP Sbjct: 219 EALLSGEDLDAVLDVWEGEP 238 |
Length = 381 |
>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 57.2 bits (139), Expect = 2e-08 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 5/53 (9%) Query: 812 NGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 864 G W + G L G TVGIVGLGNIG A+ L+ F V +++Y R Sbjct: 126 AGRWGRPE----GRPSRELSGKTVGIVGLGNIGRAVARRLRGFGV-EVIYYDR 173 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
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Score = 57.3 bits (139), Expect = 2e-08 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 45 PESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENL 104 PE L L+ + + + R+ + + K L+ ++D + LD + L Sbjct: 12 PEVLELLKPHCEVISNQTDEP---LSREELLRRCKDADGLMAFMPDRIDADFLD-ACPRL 67 Query: 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSR 153 K+IA G+D+ ++ +RGI V V + ++ AE IGL I + R Sbjct: 68 KIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116 |
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 56.3 bits (136), Expect = 3e-08 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 2/115 (1%) Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680 LK+I + G ++++L K GI V +V SS TV E+ +G+ A+ + Sbjct: 66 LKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQL 125 Query: 681 SGEWA-LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 S WA KQ I ++G+T+G+ G G +G E +L +A + K+LY + Sbjct: 126 SDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHK 179 |
Length = 314 |
>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 56.0 bits (135), Expect = 4e-08 Identities = 39/152 (25%), Positives = 63/152 (41%), Gaps = 8/152 (5%) Query: 592 LDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGH 651 LDLD + P + G K K+I + S G DH+++ I + + G Sbjct: 21 LDLDDVHWYPDYYDAEAILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNAGA 80 Query: 652 ISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGN 711 S +VAE+ L +A ++ E + +G + T + L ++GI+G G Sbjct: 81 YSI-SVAEHAFALLLAWAKNICENNYNMKNGNFKQSPTKL-------LYNKSLGILGYGG 132 Query: 712 IGLETAKLLKAFKVSKILYTSRRVKEEGQLFS 743 IG A L KAF ++ YT V + Sbjct: 133 IGRRVALLAKAFGMNIYAYTRSYVNDGISSIY 164 |
Length = 303 |
>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
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Score = 55.1 bits (133), Expect = 9e-08 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 11/123 (8%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGI---RVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 675 +K+I F VG + +++ GI R+ S G ++ + AE I L + + R+ E Sbjct: 81 SQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEM 140 Query: 676 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 + +LK + P L G TV I+G G IG+E AK L+ F V K+L T R Sbjct: 141 QI-------SLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW 192 Query: 736 KEE 738 E Sbjct: 193 TSE 195 |
Length = 347 |
>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
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Score = 54.8 bits (132), Expect = 9e-08 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 2/166 (1%) Query: 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVT 1017 T+GI+G G +G + A+ L+ + ++ R G A L +++ + Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINL 197 Query: 1018 CALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077 T +T +I ++ + A L+N +RG + ++ L+ L K+ GA LDV EP Sbjct: 198 LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREP 257 Query: 1078 LPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 LP + PL Q +TPH ++ T+ E + I + KGE Sbjct: 258 LPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGER 301 |
Length = 312 |
>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 54.5 bits (132), Expect = 1e-07 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Query: 49 SKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIA 108 + L ++ T D L L+ + +D E+L L++I Sbjct: 18 ALLPPAPGVEVVTAA------ELDEEAALLADADVLVPGMRKVIDAELLAA-APRLRLIQ 70 Query: 109 TFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRR 154 VG D + L+ +RGI V + ++++VAE+ + L +A+ RR Sbjct: 71 QPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRR 116 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
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Score = 52.1 bits (126), Expect = 1e-07 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 812 NGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPK 871 G W L G TVGI+GLG IG A+ LKAF + K++ R + Sbjct: 20 AGRWRPDALLGRE-----LSGKTVGIIGLGRIGRAVARRLKAFGM-KVIAYDRYPKAEAE 73 Query: 872 RT 873 Sbjct: 74 AL 75 |
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 54.6 bits (132), Expect = 1e-07 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 4/118 (3%) Query: 617 LIKNLKVITTFSVGYDHLELHE-IKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 675 + NL+++ FS G DH H K + + + I +AE+ IG + +S F + Sbjct: 51 DVPNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHFLQY 110 Query: 676 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 + W ++ G VGI+G G+IG +TA+L +A + YT Sbjct: 111 IELQKEQTW---GRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVYAYTRS 165 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334 |
>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 54.1 bits (131), Expect = 1e-07 Identities = 27/109 (24%), Positives = 45/109 (41%), Gaps = 9/109 (8%) Query: 618 IKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 677 + L+V+ T S GYD + + G+ + + + + AE + L +A R + Sbjct: 58 LPRLRVVQTLSAGYDGV--LPLLPEGVTLCNARGVHDASTAELAVALILASLRGLPRFVR 115 Query: 678 CITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVS 726 G W ++T L V IVG G+IG + L F+V Sbjct: 116 AQARGRWEPRRTP-------SLADRRVLIVGYGSIGRAIERRLAPFEVR 157 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 54.1 bits (131), Expect = 2e-07 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Query: 75 IEKLKGCSALLCNPHQKVDKEVLDRSGE-NLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 +G + K+ E+L++ E +K I+T S+G+DH+ LD K GI+V V Sbjct: 39 AHLAEGYDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNV- 97 Query: 134 PVSSDTVAEYNIGLAIAVSRR 154 S ++VA+Y + L + R+ Sbjct: 98 TYSPNSVADYTVMLMLMALRK 118 |
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
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Score = 53.0 bits (128), Expect = 4e-07 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%) Query: 810 TINGEWAL--KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865 G W+L ++G ++ G T+GI+GLG IG A+ LK F + K+LY R+ Sbjct: 125 VREGNWSLSGGPDPLLGFDLRGK---TLGIIGLGRIGQAVARRLKGFGM-KVLYYDRS 178 |
Length = 324 |
>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
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Score = 51.1 bits (123), Expect = 1e-06 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query: 812 NGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPK 871 G L L+G TVGIVGLG IG AK L+AF + K+LY R + P+ Sbjct: 124 RGWGWLWAGFPGY----ELEGKTVGIVGLGRIGQRVAKRLQAFGM-KVLYYDRTRKPEPE 178 Query: 872 RTENLKVIT 880 +V++ Sbjct: 179 EDLGFRVVS 187 |
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 51.5 bits (123), Expect = 1e-06 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 4/103 (3%) Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680 +K I + G+D +L K I + +V S +T+AEY++ +A+ + RRF + + + Sbjct: 70 IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQ 129 Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 723 + ++ + + P +K TV I+G G IG TAK+ F Sbjct: 130 AHDFTWQAEIMSKP----VKNMTVAIIGTGRIGAATAKIYAGF 168 |
Length = 330 |
>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 50.3 bits (121), Expect = 2e-06 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 6/95 (6%) Query: 639 IKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG 698 I G R + ++TVAE+ + L +A R+ + W + Sbjct: 69 ITDPGRRWTNAAGAYAETVAEHALALLLAGLRQL---PARARATTWDPA---EEDDLVTL 122 Query: 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 L+G+TV IVG G IG LL F I Sbjct: 123 LRGSTVAIVGAGGIGRALIPLLAPFGAKVIAVNRS 157 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
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Score = 49.8 bits (120), Expect = 3e-06 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV 867 + G VGIVGLG IG A+ L+AF + +I Y R Sbjct: 139 VSGKRVGIVGLGRIGRAIARRLEAFGM-EIAYHGRRPK 175 |
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
---|
Score = 49.8 bits (120), Expect = 4e-06 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 2/100 (2%) Query: 65 SEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124 E P + +E LK L+ + V K+V++ LK+I G +++ ++ Sbjct: 31 PEAVEPEEELLEALKDADILITH-FAPVTKKVIEA-APKLKLIGVCRGGPENVDVEAATE 88 Query: 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIAR 164 RGI V +++ VAE+ +GL +A +R + H + Sbjct: 89 RGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKD 128 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
---|
Score = 49.0 bits (118), Expect = 7e-06 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 12/68 (17%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKT 869 G W +G L G T+GI+GLG IG A+ L F + K+L + Sbjct: 129 AGGW---------DRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGM-KVLAYDPYPDEE 178 Query: 870 PKRTENLK 877 + ++ Sbjct: 179 FAKEHGVE 186 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
---|
Score = 48.8 bits (117), Expect = 9e-06 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%) Query: 70 PRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRV 129 P + E L+ L+ +E L + LK+I S G DHL L+ + G+ V Sbjct: 30 PDEAAEEALEDADVLVGGR--LTKEEALAA-LKRLKLIQVPSAGVDHLPLERLPE-GVVV 85 Query: 130 -GTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160 G +S VAE+ + L +A+++R + N Sbjct: 86 ANNHG--NSPAVAEHALALILALAKRIVEYDN 115 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
---|
Score = 48.2 bits (116), Expect = 1e-05 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 9/45 (20%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAF 854 G+W K+ MG L+G T+GIVGLG IG E A+ +AF Sbjct: 123 AGKWDRKKF-------MGVELRGKTLGIVGLGRIGREVARRARAF 160 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
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Score = 48.8 bits (117), Expect = 1e-05 Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 94 KEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSR 153 EV+ + +NLK+I+ G DH+ L+ K RGI V S++ VAE IGLAI + R Sbjct: 61 GEVI-EACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLR 119 Query: 154 RFQQ 157 Sbjct: 120 NIVP 123 |
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Score = 47.7 bits (114), Expect = 2e-05 Identities = 23/50 (46%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 812 NGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 GEW K L G TVGI+GLG IG AK LKAF + I Y Sbjct: 127 RGEWDRKAFRGTE-----LAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGY 171 |
Length = 324 |
>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
---|
Score = 47.6 bits (114), Expect = 2e-05 Identities = 21/35 (60%), Positives = 23/35 (65%), Gaps = 1/35 (2%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 864 L G TVGIVG G IGL A+L KAF K+L SR Sbjct: 142 LAGKTVGIVGTGAIGLRVARLFKAFG-CKVLAYSR 175 |
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
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Score = 47.5 bits (114), Expect = 2e-05 Identities = 16/25 (64%), Positives = 18/25 (72%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAF 854 L G TV IVGLG+IG E A+ KAF Sbjct: 132 LAGKTVLIVGLGDIGREIARRAKAF 156 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 47.6 bits (114), Expect = 2e-05 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTE 874 L G T+GI+G+G IG A+ KAF + KILY +R+++ E Sbjct: 142 LAGKTLGIIGMGRIGQAVARRAKAFGM-KILYYNRHRLSEETEKE 185 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 47.6 bits (114), Expect = 2e-05 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Query: 812 NGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 854 G W P L+G TVGI+G G+IG E A+LLKAF Sbjct: 119 RGIW--HGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAF 159 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
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Score = 48.5 bits (116), Expect = 2e-05 Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 66 EGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSR 125 + + R+ +E + AL+ KV +EV+ LKVI VG D++ ++ +R Sbjct: 26 QTGLSREELLEIIPDYDALIVRSATKVTEEVIAA-APKLKVIGRAGVGVDNIDIEAATAR 84 Query: 126 GIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 GI V ++ + AE+ + + +A +R Q Sbjct: 85 GILVVNAPTGNTISAAEHALAMLLAAARNIPQAD 118 |
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 47.1 bits (113), Expect = 3e-05 Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 10/115 (8%) Query: 48 LSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKV--DKEVLDRSGENLK 105 LS ++ Y R + +E++K ++ N KV D EVL + NLK Sbjct: 16 LSWDPLEFLGELTVYD----RTSPEEVVERIKDADIVITN---KVVLDAEVLAQL-PNLK 67 Query: 106 VIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160 +I + G++++ L K RGI V V S+D+VA++ L +A++R ++ Sbjct: 68 LIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHND 122 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
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Score = 47.1 bits (113), Expect = 3e-05 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%) Query: 74 FIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 E+L LL NP E+L + L+ I + S G D L E+ R + + Sbjct: 34 LTEELADADVLLGNPP---LPELLPAA-PRLRWIQSTSAGVDALLFPELLERDVVLTNAR 89 Query: 134 PVSSDTVAEYNIGLAIAVSRRF------QQRHNW 161 + +AEY +G +A +R+ Q W Sbjct: 90 GIFGPPIAEYVLGYMLAFARKLPRYARNQAERRW 123 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
---|
Score = 46.8 bits (112), Expect = 4e-05 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 57 FDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDH 116 +++ G + D IE LK L ++ +EVL+ + L I F +G + Sbjct: 22 IEVERLK---GALDEDELIEALKDVHLLGIRSKTQLTEEVLEAA-PKLLAIGCFCIGTNQ 77 Query: 117 LHLDEIKSRGIRVGTVGPVS-SDTVAEYNIGLAIAVSRRFQQR 158 + LD RGI V P S + +VAE IG I ++RR R Sbjct: 78 VDLDAAAKRGIPVFN-APFSNTRSVAELVIGEIIMLARRLPDR 119 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 46.8 bits (112), Expect = 4e-05 Identities = 41/203 (20%), Positives = 75/203 (36%), Gaps = 47/203 (23%) Query: 529 AFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTE 587 A E+ ++ + D IE L+ L S+ ++ ++VL+ + Sbjct: 13 ADELFRAGGIEVERLKGAL---DEDELIEALKDVHLLGIRSKTQLTEEVLEAA------- 62 Query: 588 DFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVG 647 L I F +G + ++L RGI V Sbjct: 63 -------------------------------PKLLAIGCFCIGTNQVDLDAAAKRGIPVF 91 Query: 648 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIV 707 + ++ +VAE IG I ++RR + G W ++ ++G T+GI+ Sbjct: 92 NAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIW--NKSAT---GSHEVRGKTLGII 146 Query: 708 GLGNIGLETAKLLKAFKVSKILY 730 G G+IG + + L +A + I Y Sbjct: 147 GYGHIGSQLSVLAEALGMRVIFY 169 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
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Score = 46.4 bits (111), Expect = 5e-05 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 5/59 (8%) Query: 831 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHL 889 +G T+GI+GLG IG A+ AF + KI+Y +R + E K + T+ V D L Sbjct: 153 RGKTLGILGLGGIGKAIARKAAAFGM-KIIYHNR----SRLPEELEKALATYYVSLDEL 206 |
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 45.6 bits (108), Expect = 8e-05 Identities = 16/54 (29%), Positives = 32/54 (59%) Query: 320 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 +SDF+ ++ LT +T +I K SL + +IN +R ++D+ ++ FL++ Sbjct: 173 KSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH 226 |
Length = 303 |
>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 45.5 bits (109), Expect = 9e-05 Identities = 14/40 (35%), Positives = 23/40 (57%) Query: 827 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866 I+ L G T+GI+G GNIG A++ +AF + + + Sbjct: 142 IIELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERKGA 181 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
---|
Score = 45.2 bits (108), Expect = 1e-04 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Query: 813 GEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 G W +G I L+G T+G+VG G IG AK KAF I Y Sbjct: 127 GGWDWT----VGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAY 171 |
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 45.8 bits (110), Expect = 1e-04 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 9/46 (19%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFK 855 G+W K MG L G T+GI+GLG IG E AK KAF Sbjct: 125 AGKWERK-------KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFG 163 |
Length = 526 |
>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
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Score = 45.2 bits (108), Expect = 1e-04 Identities = 30/134 (22%), Positives = 49/134 (36%), Gaps = 25/134 (18%) Query: 52 RFNSRFDIDTYPVSEGRMPRDIFIEKLK-----GCSALLCNPHQK-----VDKEVLDRSG 101 +S ++ R+ FIE LK A+ D+E++ Sbjct: 19 ELSSIAEVIYPT----SGTREEFIEALKEGKYGDFVAIYRTFGSAGETGPFDEELISPLP 74 Query: 102 ENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNW 161 +LK+IA G+D + +D + RGI+V + A+ + L + R F Sbjct: 75 PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNF------ 128 Query: 162 IARLSSFAEIQTRA 175 S AE RA Sbjct: 129 -----SRAERSARA 137 |
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
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Score = 45.4 bits (108), Expect = 1e-04 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 806 CYHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865 + I G W + + L+G TVG VG G IGL + LK F V +LY R+ Sbjct: 139 GHEQAIEGGWNVAD---VVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDV-HLLYYDRH 194 |
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 44.7 bits (107), Expect = 1e-04 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 91 KVDKEVLDRSGEN-LKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAI 149 +D VL++ E +K+IA G +++ L K GI V V S VAE+ + L + Sbjct: 55 DLDAPVLEKLAELGVKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLL 114 Query: 150 AVSRR 154 A++R+ Sbjct: 115 ALNRK 119 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 45.2 bits (108), Expect = 1e-04 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%) Query: 75 IEKLKGCSALLCNPHQKVDKEVLDRSGEN-LKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 ++ KG ++ D+EV ++ E +K IA S G D + LD K G+++ V Sbjct: 39 VDLAKGYDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVP 98 Query: 134 PVSSDTVAEYNIGLAIAVSRR---FQQRHN 160 S +AE+ + A+ + R +R Sbjct: 99 AYSPRAIAEFAVTQALNLLRNTPEIDRRVA 128 |
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
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Score = 45.1 bits (107), Expect = 1e-04 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 656 TVAEYNIGLAIAVSRRFQEGRKCITSGEWALK----QTHIIGPNIMGLKGATVGIVGLGN 711 TVAE+ + L +A RR E R+ WA + Q + L GA V I G G+ Sbjct: 94 TVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGS 153 Query: 712 IGLETAKLLKAF 723 IG A LL A Sbjct: 154 IGQRLAPLLTAL 165 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases | Back alignment and domain information |
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Score = 44.9 bits (106), Expect = 1e-04 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTE-QLIGRKQFSLMKPTAILINTSRGGLLD 362 G + L+ AE+D I T L L+ + MKP ++++N + G + Sbjct: 200 EELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGC 259 Query: 363 QEALVEF-LKDKKIGGAGLDVMIPEPLPA 390 +AL L++ DV +P P A Sbjct: 260 VQALHTQLLEEGHGVVHYGDVNMPGPGCA 288 |
The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310 |
>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
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Score = 43.7 bits (104), Expect = 3e-04 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 5/90 (5%) Query: 70 PRDIFIEKLKGCSAL-LCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIR 128 D E+L A+ L +L+R NLK++ T + + + L K RGI Sbjct: 36 DEDALAERLAPFDAIVLMRERTPFPAALLERLP-NLKLLVTTGMRNASIDLAAAKERGIV 94 Query: 129 V-GTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 V GT G AE L +A++R + Sbjct: 95 VCGTGG--GPTATAELTWALILALARNLPE 122 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 44.2 bits (105), Expect = 3e-04 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 75 IEKLKGCSALLCNPHQKVDKEVLDRSGE-NLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 + KG A++ + DKE L+ E +K + T +VG +H+ L+ K G ++ V Sbjct: 39 VHLAKGHDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVP 98 Query: 134 PVSSDTVAEYNIGLAIAVSRRFQ 156 S + +AE LA+ +SR Sbjct: 99 SYSPNAIAELAFTLAMTLSRHTA 121 |
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated | Back alignment and domain information |
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Score = 44.0 bits (104), Expect = 3e-04 Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 320 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAG 379 +D + + TK L F K A+ +N +RG L+D +AL++ L + I GA Sbjct: 200 GADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAA 259 Query: 380 LD 381 LD Sbjct: 260 LD 261 |
Length = 332 |
>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
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Score = 43.9 bits (104), Expect = 4e-04 Identities = 35/193 (18%), Positives = 60/193 (31%), Gaps = 68/193 (35%) Query: 531 EILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFF 590 +I P R +R LL S RVD+ +L+ S Sbjct: 14 AFFAGFGEIRRLPG------RAFDRAAVRDADVLLVRSVTRVDRALLEGS---------- 57 Query: 591 GLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVG 650 ++ + T ++G DHL+L GI S Sbjct: 58 -----------------------------RVRFVGTCTIGTDHLDLDYFAEAGITWSSAP 88 Query: 651 HISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLG 710 ++ V +Y +G + ++ R EG + L T G+VG G Sbjct: 89 GCNARGVVDYVLGSLLTLAER--EG---------------------VDLAERTYGVVGAG 125 Query: 711 NIGLETAKLLKAF 723 ++G ++L+ Sbjct: 126 HVGGRLVRVLRGL 138 |
Length = 381 |
>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 43.7 bits (103), Expect = 4e-04 Identities = 17/63 (26%), Positives = 33/63 (52%) Query: 319 AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGA 378 ++D I + K++ L + F +K AIL+N +RG +++ L+ + D + GA Sbjct: 197 KDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGA 256 Query: 379 GLD 381 +D Sbjct: 257 AID 259 |
Length = 330 |
>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
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Score = 43.5 bits (104), Expect = 6e-04 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 22/131 (16%) Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95 ++LV + +S L+ ++D + ++ +E + AL+ KV E Sbjct: 2 KVLVSDPISPAGLEILKDAPGVEVDVKT----GLDKEELLEIIGDYDALIVRSATKVTAE 57 Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRV------GTVGPVSSDTVAEYNIGLAI 149 VL+ +NLKVI VG D++ + RGI V T+ + AE+ I L + Sbjct: 58 VLEA-AKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTI------SAAEHTIALML 110 Query: 150 AVSRRFQQRHN 160 A++R Q H Sbjct: 111 ALARNIPQAHA 121 |
Length = 526 |
>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
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Score = 43.0 bits (102), Expect = 6e-04 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Query: 827 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV 867 GL G TVGI+G+G +G A+ L F +LY + + Sbjct: 139 GTGLDGKTVGILGMGALGRAIARRLSGFGA-TLLYYDPHPL 178 |
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
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Score = 43.1 bits (102), Expect = 6e-04 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Query: 816 ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865 +LK + P L G TV I+G G IG+E AK L+ F V K+L T R+ Sbjct: 143 SLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS 191 |
Length = 347 |
>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 42.5 bits (101), Expect = 7e-04 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 10/71 (14%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKT 869 G+W K+ G L+G T+GI+G G IG E AK+ +A + ++ Sbjct: 124 LGKWNKKK-------YKGIELRGKTLGIIGFGRIGREVAKIARALGM-NVIAYDPYPKDE 175 Query: 870 PKRTENLKVIT 880 +K ++ Sbjct: 176 QAVELGVKTVS 186 |
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
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Score = 42.1 bits (99), Expect = 0.001 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%) Query: 808 HGTINGEWALKQT--HIIGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYT 862 H +GEW + H P + + G T+GI+G G IG A+ K F + +ILY Sbjct: 124 HFVRSGEWKRRGVAWH---PLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYY 179 Query: 863 SRNK 866 SR + Sbjct: 180 SRTR 183 |
Length = 333 |
>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 42.3 bits (100), Expect = 0.001 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 4/55 (7%) Query: 812 NGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866 G+W + + L G TVGI+G GNIG A++LK +K+L Sbjct: 131 EGKWTERANFVGHE----LSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYV 181 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
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Score = 41.9 bits (99), Expect = 0.001 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 10/72 (13%) Query: 653 SSDTVAEYNIGLAIAVSRRFQEGRKCITS-GEWALKQTHIIGPNIMGLKGATVGIVGLGN 711 +++ +AE+ + +A ++R E + +W + +G L G+T+GIVG G Sbjct: 95 AAEAIAEFVLAAILAAAKRLPEIW--VKGAEQWRRE---PLGS----LAGSTLGIVGFGA 145 Query: 712 IGLETAKLLKAF 723 IG A+ A Sbjct: 146 IGQALARRALAL 157 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases | Back alignment and domain information |
---|
Score = 42.2 bits (99), Expect = 0.001 Identities = 31/195 (15%), Positives = 66/195 (33%), Gaps = 39/195 (20%) Query: 620 NLKVITTFSVGYDHLELHE-IKARGIRV----GSVGHISSDT---VAEYNIGLAIAVSRR 671 +++ T+++G DH +L E + G+ G + + E ++ Sbjct: 87 GDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFIARFLEV 146 Query: 672 FQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYT 731 Q GR + G TV +VG G +G E A++L+ +++L T Sbjct: 147 QQPGRL----------------GGAPDVAGKTVVVVGAGVVGKEAAQMLRGLG-AQVLIT 189 Query: 732 SRRVKEEGQLFSLVYDFCRYSIGGVTIKRLVKKTFILSFGGLVVTVLHVHIGDLPAESFE 791 V+ QL L ++ + + ++ V + A Sbjct: 190 DINVEALEQLEELGGKNV------EELEEALAEADVI--------VTTTLLPGKRAGILV 235 Query: 792 DQVQTDGLKTLTELC 806 + + +K + + Sbjct: 236 PEELVEQMKPGSVIV 250 |
The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310 |
>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
---|
Score = 42.6 bits (100), Expect = 0.001 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 14/83 (16%) Query: 314 LDTLCAESDFIFVTCALTKD---------TEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 LD L E+D + L KD E+LI +KP AILIN RG ++D Sbjct: 161 LDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRS-----LKPGAILINACRGAVVDNT 215 Query: 365 ALVEFLKDKKIGGAGLDVMIPEP 387 AL+ L + + LDV EP Sbjct: 216 ALLTCLNEGQKLSVVLDVWEGEP 238 |
Length = 378 |
>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
---|
Score = 42.1 bits (99), Expect = 0.001 Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 331 TKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA 390 T +T +I ++ + A L+N +RG + ++ L+ L K+ GA LDV EPLP Sbjct: 201 TPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPP 260 Query: 391 DHPL 394 + PL Sbjct: 261 ESPL 264 |
Length = 312 |
>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
---|
Score = 41.7 bits (99), Expect = 0.002 Identities = 15/27 (55%), Positives = 19/27 (70%) Query: 828 MGLKGATVGIVGLGNIGLETAKLLKAF 854 GL G T+GIVGLG IG A++ +AF Sbjct: 138 TGLAGKTLGIVGLGRIGARVARIGQAF 164 |
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
---|
Score = 41.4 bits (98), Expect = 0.002 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 68 RMP-RDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRG 126 +P R+I E LK LL KV++ +L+ S +K + T ++G DH+ D +K RG Sbjct: 23 YLPGREITAEDLKDADVLLVRSVTKVNEALLEGS--KVKFVGTATIGTDHIDTDYLKERG 80 Query: 127 IRVGTVGPVSSDTVAEY 143 I ++++VAEY Sbjct: 81 IGFANAPGCNANSVAEY 97 |
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
---|
Score = 41.5 bits (98), Expect = 0.002 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 313 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372 PL+ L D I TC L K+ L+G ++F L+ IL NTS G + EAL ++LK Sbjct: 184 PLNELLKTVDVIC-TC-LPKNV-ILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKA 240 Query: 373 KK 374 Sbjct: 241 SG 242 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294 |
>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain | Back alignment and domain information |
---|
Score = 39.4 bits (93), Expect = 0.002 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 12/102 (11%) Query: 953 GLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEEGTA-LGAQLV-------P 1003 G+ A V ++G G +GL A K +L + + LGA+ Sbjct: 17 GVPPAKVVVIGAGVVGLGAAATAKGLGAEVTVLDVRPARLRQLESLLGARFTTLYSQAEL 76 Query: 1004 LDTLCAESDFIFVTCAL--TKDTEQLIGRKQFSLMKPTAILV 1043 L+ E+D + + L +L+ R+ MKP +++V Sbjct: 77 LEEAVKEAD-LVIGAVLIPGAKAPKLVTREMVKSMKPGSVIV 117 |
Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 149 |
>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
---|
Score = 41.0 bits (97), Expect = 0.003 Identities = 16/33 (48%), Positives = 21/33 (63%) Query: 829 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 GL G TVGIVG G IG +LL+ F + ++Y Sbjct: 147 GLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVY 179 |
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
---|
Score = 41.2 bits (97), Expect = 0.003 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 14/63 (22%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKIL----YTSRN 865 GEW K MG L G T+G++GLG IG AK KAF + K+L Y S Sbjct: 123 EGEWDRKA-------FMGTELYGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDPYISPE 174 Query: 866 KVK 868 + + Sbjct: 175 RAE 177 |
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
---|
Score = 40.4 bits (95), Expect = 0.003 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 6/55 (10%) Query: 812 NGEWALKQ--THIIGPNIMG-LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 863 +GE++ THI P +G +KG GI+GLG IG AK+ +AF +K++Y S Sbjct: 124 SGEYSESPIFTHISRP--LGEIKGKKWGIIGLGTIGKRVAKIAQAFG-AKVVYYS 175 |
Length = 311 |
>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
---|
Score = 41.0 bits (96), Expect = 0.003 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866 YH ++GEW + I L+G TVG VG G IG + LK F +LY R K Sbjct: 177 YHQVVSGEWNVAG---IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLK 232 Query: 867 V 867 + Sbjct: 233 M 233 |
Length = 386 |
>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
---|
Score = 40.7 bits (95), Expect = 0.003 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 9/102 (8%) Query: 75 IEKLKGCSALLCNPHQKVDKEVLDR-SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 +++LK + K++ +V + +K IA + G D LD K I + V Sbjct: 40 VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVP 99 Query: 134 PVSSDTVAEYNIGLAIAVSRRFQ------QRHN--WIARLSS 167 S +T+AEY++ +A+ + RRF Q H+ W A + S Sbjct: 100 SYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMS 141 |
Length = 330 |
>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
---|
Score = 40.4 bits (95), Expect = 0.004 Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 103 NLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWI 162 NLK+ T +G DH+ L GI V V +S +VAE+ + + +A+ R ++ H Sbjct: 114 NLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQA 173 |
Length = 385 |
>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
---|
Score = 40.4 bits (95), Expect = 0.004 Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAF 854 ++ +TVGI+G G IGL AKL K Sbjct: 143 IRNSTVGIIGTGRIGLTAAKLFKGL 167 |
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
---|
Score = 40.6 bits (96), Expect = 0.004 Identities = 16/32 (50%), Positives = 23/32 (71%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 LKG TVGIVG+GN+G A+ L+A ++ +L Sbjct: 113 LKGKTVGIVGVGNVGSRLARRLEALGMNVLLC 144 |
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
Query | 1128 | |||
COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 100.0 | |
PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 100.0 | |
COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 100.0 | |
PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 100.0 | |
PRK06487 | 317 | glycerate dehydrogenase; Provisional | 100.0 | |
COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 100.0 | |
PRK06932 | 314 | glycerate dehydrogenase; Provisional | 100.0 | |
KOG0068|consensus | 406 | 100.0 | ||
PRK13243 | 333 | glyoxylate reductase; Reviewed | 100.0 | |
PLN03139 | 386 | formate dehydrogenase; Provisional | 100.0 | |
PRK07574 | 385 | formate dehydrogenase; Provisional | 100.0 | |
PLN02928 | 347 | oxidoreductase family protein | 100.0 | |
PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
KOG0068|consensus | 406 | 100.0 | ||
PLN02306 | 386 | hydroxypyruvate reductase | 100.0 | |
COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 100.0 | |
PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 100.0 | |
TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 100.0 | |
PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 100.0 | |
PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 100.0 | |
PRK06487 | 317 | glycerate dehydrogenase; Provisional | 100.0 | |
PRK06932 | 314 | glycerate dehydrogenase; Provisional | 100.0 | |
PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 100.0 | |
PRK08605 | 332 | D-lactate dehydrogenase; Validated | 100.0 | |
KOG0069|consensus | 336 | 100.0 | ||
PRK13243 | 333 | glyoxylate reductase; Reviewed | 100.0 | |
PLN02306 | 386 | hydroxypyruvate reductase | 100.0 | |
PLN03139 | 386 | formate dehydrogenase; Provisional | 100.0 | |
PRK06436 | 303 | glycerate dehydrogenase; Provisional | 100.0 | |
PRK07574 | 385 | formate dehydrogenase; Provisional | 100.0 | |
PLN02928 | 347 | oxidoreductase family protein | 100.0 | |
TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 100.0 | |
PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 100.0 | |
PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 100.0 | |
KOG0069|consensus | 336 | 100.0 | ||
PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 100.0 | |
PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 100.0 | |
PRK08605 | 332 | D-lactate dehydrogenase; Validated | 100.0 | |
PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 100.0 | |
PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 100.0 | |
PRK06436 | 303 | glycerate dehydrogenase; Provisional | 100.0 | |
PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 100.0 | |
PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 100.0 | |
KOG0067|consensus | 435 | 99.95 | ||
KOG0067|consensus | 435 | 99.89 | ||
PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.8 | |
TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.67 | |
PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.59 | |
PF00389 | 133 | 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr | 99.59 | |
PF00389 | 133 | 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr | 99.57 | |
PLN02494 | 477 | adenosylhomocysteinase | 99.51 | |
PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.43 | |
TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 99.4 | |
PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.37 | |
TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.3 | |
PLN02712 | 667 | arogenate dehydrogenase | 99.2 | |
PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.16 | |
PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 99.12 | |
PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 99.05 | |
PLN02494 | 477 | adenosylhomocysteinase | 99.03 | |
PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 98.99 | |
COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 98.92 | |
TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 98.87 | |
PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 98.87 | |
TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.85 | |
PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 98.84 | |
cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.83 | |
PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.78 | |
PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 98.77 | |
PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.7 | |
PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.65 | |
PLN02256 | 304 | arogenate dehydrogenase | 98.64 | |
PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 98.53 | |
COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.52 | |
PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 98.52 | |
TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.47 | |
PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.44 | |
KOG0409|consensus | 327 | 98.43 | ||
PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.41 | |
PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.4 | |
PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.39 | |
TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.37 | |
TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.34 | |
PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.32 | |
PRK08655 | 437 | prephenate dehydrogenase; Provisional | 98.3 | |
PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 98.28 | |
PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 98.25 | |
cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.24 | |
PLN02712 | 667 | arogenate dehydrogenase | 98.24 | |
KOG1370|consensus | 434 | 98.24 | ||
TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.22 | |
PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.21 | |
PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.2 | |
TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.17 | |
PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.14 | |
PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 98.13 | |
PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.11 | |
PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.07 | |
PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.05 | |
PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.04 | |
PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 98.03 | |
PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.02 | |
PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.02 | |
PRK06545 | 359 | prephenate dehydrogenase; Validated | 98.01 | |
PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.99 | |
COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 97.96 | |
PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.95 | |
cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.94 | |
PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 97.94 | |
TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.92 | |
PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.9 | |
PRK08507 | 275 | prephenate dehydrogenase; Validated | 97.9 | |
cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.89 | |
PRK08818 | 370 | prephenate dehydrogenase; Provisional | 97.84 | |
PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.84 | |
PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 97.82 | |
PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.79 | |
TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.79 | |
PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.78 | |
PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.77 | |
PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 97.76 | |
PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.75 | |
PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.7 | |
PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.69 | |
PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.66 | |
PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.64 | |
PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 97.61 | |
TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 97.59 | |
PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.59 | |
PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.58 | |
PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.57 | |
PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.57 | |
PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.57 | |
COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 97.56 | |
PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.53 | |
TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 97.52 | |
COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.46 | |
PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.45 | |
TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.44 | |
PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.41 | |
PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 97.4 | |
TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 97.39 | |
COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.36 | |
PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.35 | |
cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.35 | |
PRK07680 | 273 | late competence protein ComER; Validated | 97.33 | |
TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.33 | |
PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.31 | |
PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.3 | |
PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.29 | |
cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.26 | |
PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.26 | |
PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 97.24 | |
PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 97.21 | |
PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.19 | |
PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.18 | |
PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.17 | |
cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.16 | |
PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.15 | |
PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.13 | |
PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.13 | |
PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 97.12 | |
PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.1 | |
cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.05 | |
PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.04 | |
cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.02 | |
PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.02 | |
PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.02 | |
PLN00203 | 519 | glutamyl-tRNA reductase | 96.97 | |
PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 96.95 | |
PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.94 | |
PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 96.93 | |
PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.93 | |
cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.91 | |
PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 96.9 | |
PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.9 | |
COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 96.89 | |
TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 96.83 | |
TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.8 | |
TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 96.75 | |
COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 96.73 | |
PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 96.73 | |
cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.73 | |
PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 96.69 | |
PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.68 | |
COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.66 | |
KOG2380|consensus | 480 | 96.66 | ||
PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.65 | |
PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 96.62 | |
PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.58 | |
PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.57 | |
PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.57 | |
PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.55 | |
PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.54 | |
PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.5 | |
PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 96.49 | |
PRK06141 | 314 | ornithine cyclodeaminase; Validated | 96.44 | |
PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.42 | |
PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.42 | |
cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.38 | |
PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.37 | |
COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.31 | |
PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 96.3 | |
cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 96.25 | |
PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 96.25 | |
PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.24 | |
PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.24 | |
PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.23 | |
TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.22 | |
PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 96.21 | |
PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.2 | |
PRK07340 | 304 | ornithine cyclodeaminase; Validated | 96.19 | |
PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.18 | |
PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.17 | |
PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.16 | |
TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 96.15 | |
PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.15 | |
PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.09 | |
PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.09 | |
PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.08 | |
PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.08 | |
PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.07 | |
cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.0 | |
PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.92 | |
TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.91 | |
PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 95.9 | |
cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.85 | |
COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.83 | |
PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.8 | |
PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.69 | |
PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.68 | |
TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.63 | |
PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.6 | |
PRK14031 | 444 | glutamate dehydrogenase; Provisional | 95.59 | |
COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.58 | |
TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 95.52 | |
PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.51 | |
COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.49 | |
PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 95.39 | |
PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 95.39 | |
PRK06444 | 197 | prephenate dehydrogenase; Provisional | 95.38 | |
TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 95.35 | |
TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 95.34 | |
PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.33 | |
PRK09414 | 445 | glutamate dehydrogenase; Provisional | 95.3 | |
PRK14030 | 445 | glutamate dehydrogenase; Provisional | 95.3 | |
PRK08618 | 325 | ornithine cyclodeaminase; Validated | 95.28 | |
PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 95.26 | |
PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 95.18 | |
PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 95.13 | |
PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 95.06 | |
PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 95.0 | |
TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 94.99 | |
PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 94.98 | |
COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 94.92 | |
PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 94.91 | |
PRK08291 | 330 | ectoine utilization protein EutC; Validated | 94.82 | |
PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 94.81 | |
COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 94.77 | |
PRK06046 | 326 | alanine dehydrogenase; Validated | 94.75 | |
PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 94.71 | |
smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 94.7 | |
TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 94.58 | |
PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.58 | |
PLN02477 | 410 | glutamate dehydrogenase | 94.57 | |
KOG0023|consensus | 360 | 94.56 | ||
PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 94.53 | |
COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 94.48 | |
PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 94.48 | |
PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 94.47 | |
TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 94.46 | |
PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.44 | |
COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 94.44 | |
TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 94.44 | |
PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.41 | |
TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 94.41 | |
TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.32 | |
COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 94.23 | |
COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 94.2 | |
TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 94.2 | |
PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 94.19 | |
TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 94.16 | |
PRK06823 | 315 | ornithine cyclodeaminase; Validated | 94.14 | |
TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 94.11 | |
PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 94.07 | |
PRK06199 | 379 | ornithine cyclodeaminase; Validated | 94.04 | |
PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 94.0 | |
PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 93.88 | |
PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 93.86 | |
COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 93.75 | |
TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 93.63 | |
PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 93.56 | |
COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 93.51 | |
PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 93.47 | |
PLN02527 | 306 | aspartate carbamoyltransferase | 93.46 | |
TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 93.46 | |
PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 93.41 | |
PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.39 | |
PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 93.39 | |
PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 93.35 | |
PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 93.26 | |
PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 93.2 | |
TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 93.14 | |
cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 93.13 | |
PLN02342 | 348 | ornithine carbamoyltransferase | 93.13 | |
cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 93.08 | |
PLN02256 | 304 | arogenate dehydrogenase | 93.07 | |
COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 93.02 | |
COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 92.89 | |
PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 92.83 | |
PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 92.72 | |
PRK07589 | 346 | ornithine cyclodeaminase; Validated | 92.7 | |
PRK06223 | 307 | malate dehydrogenase; Reviewed | 92.54 | |
PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 92.5 | |
PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 92.47 | |
PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 92.41 | |
COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 92.39 | |
PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 92.32 | |
TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 92.15 | |
PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 92.02 | |
PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 91.95 | |
KOG2653|consensus | 487 | 91.95 | ||
PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 91.93 | |
COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 91.84 | |
PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 91.83 | |
cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 91.72 | |
PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 91.7 | |
PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 91.67 | |
cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 91.66 | |
cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 91.54 | |
PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 91.54 | |
cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 91.44 | |
cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 91.43 | |
PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 91.43 | |
TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 91.4 | |
PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.38 | |
PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 91.36 | |
PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.36 | |
PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.35 | |
KOG1370|consensus | 434 | 91.18 | ||
PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.17 | |
PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 91.1 | |
COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 91.06 | |
PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.06 | |
PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.99 | |
PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 90.96 | |
PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 90.95 | |
cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 90.92 | |
PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 90.9 | |
PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 90.85 | |
PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 90.82 | |
PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.77 | |
PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 90.74 | |
COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 90.58 | |
cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 90.57 | |
PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 90.53 | |
PRK10669 | 558 | putative cation:proton antiport protein; Provision | 90.52 | |
PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 90.51 | |
cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 90.48 | |
PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 90.47 | |
KOG0409|consensus | 327 | 90.43 | ||
PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.41 | |
PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.41 | |
PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 90.25 | |
cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 90.22 | |
COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 90.02 | |
cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 89.93 | |
cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 89.91 | |
PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 89.87 | |
cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 89.87 | |
PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 89.85 | |
COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 89.82 | |
PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 89.73 | |
PRK09414 | 445 | glutamate dehydrogenase; Provisional | 89.72 | |
PRK11579 | 346 | putative oxidoreductase; Provisional | 89.72 | |
PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 89.72 | |
PRK06270 | 341 | homoserine dehydrogenase; Provisional | 89.71 | |
cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 89.7 | |
cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 89.66 | |
PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 89.6 | |
COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 89.58 | |
PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 89.41 | |
PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 89.41 | |
COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 89.4 | |
PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 89.34 | |
PRK14030 | 445 | glutamate dehydrogenase; Provisional | 89.32 | |
PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 89.24 | |
cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 89.2 | |
COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 89.19 | |
TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 89.08 | |
PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 89.0 | |
PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 88.96 | |
PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 88.94 | |
TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 88.92 | |
cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 88.8 | |
PRK05086 | 312 | malate dehydrogenase; Provisional | 88.74 | |
PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 88.73 | |
PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 88.62 | |
PRK06484 | 520 | short chain dehydrogenase; Validated | 88.54 | |
PRK10637 | 457 | cysG siroheme synthase; Provisional | 88.48 | |
PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 88.48 | |
PRK14031 | 444 | glutamate dehydrogenase; Provisional | 88.38 | |
PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.33 | |
PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 88.33 | |
KOG0023|consensus | 360 | 88.32 | ||
PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 88.29 | |
TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 88.26 | |
TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 88.25 | |
TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 88.25 | |
PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 88.14 | |
PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 88.05 | |
PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.99 | |
PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 87.94 | |
PF05222 | 136 | AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal | 87.93 | |
cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 87.81 | |
PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 87.79 | |
TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 87.74 | |
PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.73 | |
PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 87.66 | |
PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 87.58 | |
TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 87.58 | |
PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 87.49 | |
PLN02477 | 410 | glutamate dehydrogenase | 87.49 | |
PRK08223 | 287 | hypothetical protein; Validated | 87.45 | |
PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 87.31 | |
COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 87.25 | |
PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 87.21 | |
PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 87.19 | |
PRK06545 | 359 | prephenate dehydrogenase; Validated | 87.18 | |
TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 87.11 | |
PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 87.11 | |
PRK04148 | 134 | hypothetical protein; Provisional | 86.94 | |
PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.92 | |
PRK12862 | 763 | malic enzyme; Reviewed | 86.64 | |
PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 86.6 | |
cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 86.57 | |
PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 86.45 | |
PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.02 | |
TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 86.0 | |
PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 85.98 | |
TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 85.89 | |
PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 85.75 | |
PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 85.67 | |
PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 85.37 | |
PRK12861 | 764 | malic enzyme; Reviewed | 85.33 | |
COG5322 | 351 | Predicted dehydrogenase [General function predicti | 85.27 | |
PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 85.24 | |
PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 85.17 | |
TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 84.89 | |
cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 84.86 | |
PRK07411 | 390 | hypothetical protein; Validated | 84.83 | |
PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 84.74 | |
PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.74 | |
PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 84.65 | |
cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 84.5 | |
PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 84.37 | |
PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 84.36 | |
PLN02688 | 266 | pyrroline-5-carboxylate reductase | 84.27 | |
PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.26 | |
PLN00203 | 519 | glutamyl-tRNA reductase | 84.23 | |
PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 84.22 | |
PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.22 | |
PTZ00325 | 321 | malate dehydrogenase; Provisional | 84.19 | |
PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 84.14 | |
COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 84.04 | |
PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.02 | |
PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 83.82 | |
TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 83.81 | |
TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 83.59 | |
TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 83.57 | |
PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.49 | |
PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 83.4 | |
PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 83.35 | |
COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 83.28 | |
COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 83.14 | |
PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 83.13 | |
PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 83.04 | |
PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 82.91 | |
PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 82.88 | |
TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 82.69 | |
cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 82.67 | |
TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 82.63 | |
PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 82.55 | |
TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 82.49 | |
cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 82.46 | |
PRK10206 | 344 | putative oxidoreductase; Provisional | 82.42 | |
PRK06392 | 326 | homoserine dehydrogenase; Provisional | 82.37 | |
COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 82.37 | |
PRK08507 | 275 | prephenate dehydrogenase; Validated | 82.21 | |
PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 82.21 | |
COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 82.17 | |
PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 82.11 | |
PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 82.09 | |
PRK08328 | 231 | hypothetical protein; Provisional | 82.03 | |
cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 82.02 | |
PLN00106 | 323 | malate dehydrogenase | 81.93 | |
PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.78 |
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=100.00 E-value=5.8e-63 Score=559.00 Aligned_cols=275 Identities=36% Similarity=0.511 Sum_probs=254.7 Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128) .+++.+.+++++++.+..+++++++++.+ |+||||++.|+|+||||+++++++||.|+|+|+.|+.+||||+++++|++ T Consensus 36 ~~~l~~~~~~~d~~~~~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~ 114 (324) T COG0111 36 EEELLEALADADALIVSVTPVTEEVLAAA-PNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLAL 114 (324) T ss_pred hHHHHhhcccCcEEEEecCCCCHHHHhhC-CCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHH Confidence 44567778888866667789999999997 99999999999999999999999999999999999999999999999999 Q ss_pred HhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCC-ccc Q psy13054 924 SRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGA-QLV 1002 (1128) Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~-~~~ 1002 (1128) .|+++.+++.+++|.|.+. .....+|+||||||||+|+||+++|++|++|||+|++||++.+++.....++ ... T Consensus 115 ~R~~~~~~~~~~~g~W~~~-----~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~ 189 (324) T COG0111 115 ARRIPDADASQRRGEWDRK-----AFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVD 189 (324) T ss_pred hcCchhhHHHHHcCCcccc-----ccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecc Confidence 9999999999999999831 1223389999999999999999999999999999999999777654333333 456 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) +|++++++||||++|+|+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.+| T Consensus 190 ~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~ 269 (324) T COG0111 190 SLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADS 269 (324) T ss_pred cHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCC Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC Q psy13054 1083 PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPM 1124 (1128) Q Consensus 1083 pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l 1124 (1128) |||++|||++|||+||+|.|+++++++++++|+.+|+.|+++ T Consensus 270 pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~ 311 (324) T COG0111 270 PLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPV 311 (324) T ss_pred hhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCC Confidence 999999999999999999999999999999999999999984 |
|
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=2.1e-61 Score=548.37 Aligned_cols=281 Identities=31% Similarity=0.448 Sum_probs=254.4 Q ss_pred hHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHH Q psy13054 845 LETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVS 924 (1128) Q Consensus 845 ~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~ 924 (1128) ++..+.++++++++....++++++++++ |+||||++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++. T Consensus 37 ~~~~~~~~~ad~li~~~~~~~~~~l~~~-p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~ 115 (323) T PRK15409 37 EQHAAAFAEAEGLLGSGEKVDAALLEKM-PKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTA 115 (323) T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHhhC-CCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHH Confidence 3556666777765544467999999997 999999999999999999999999999999999999999999999999999 Q ss_pred hccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHh-hCCCEEEEEeCCCCchhhhhcCCcccC Q psy13054 925 RRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLK-AFKVSKILYTSRRVKEEGTALGAQLVP 1003 (1128) Q Consensus 925 R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~-afG~~Vi~~d~~~~~~~~~~~g~~~~~ 1003 (1128) |++..+++.+++|+|..... ......+|+|||+||||+|+||+++|++++ +|||+|++||++.........++++++ T Consensus 116 R~i~~~~~~~~~g~w~~~~~--~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~ 193 (323) T PRK15409 116 RRVVEVAERVKAGEWTASIG--PDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCD 193 (323) T ss_pred cCHHHHHHHHHcCCCcccCc--cccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecC Confidence 99999999999999972110 011234899999999999999999999998 999999988876543333455777889 Q ss_pred hHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCc Q psy13054 1004 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 (1128) Q Consensus 1004 l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~p 1083 (1128) +++++++||+|++|||+|++|+||||++.|++||||++|||+|||++||++||++||++|+|+|||||||++||+|.++| T Consensus 194 l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~p 273 (323) T PRK15409 194 LDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSP 273 (323) T ss_pred HHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCch Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1084 L~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) ||++|||++|||+||.|.++++++.+.+++||.+|++|+++.|.| T Consensus 274 L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 318 (323) T PRK15409 274 LLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCV 318 (323) T ss_pred hhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc Confidence 999999999999999999999999999999999999999887765 |
|
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
---|
Probab=100.00 E-value=8e-61 Score=541.05 Aligned_cols=280 Identities=41% Similarity=0.594 Sum_probs=256.3 Q ss_pred HHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHH Q psy13054 846 ETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVS 924 (1128) Q Consensus 846 e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~ 924 (1128) ++.+.+++++..... ++++++++++++ |+||+|++.|+|+||||+++|+++||.|+|+|++++++||||++++||++. T Consensus 37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~ 115 (324) T COG1052 37 ELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALA 115 (324) T ss_pred HHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHh Confidence 446677777755554 789999999998 999999999999999999999999999999999999999999999999999 Q ss_pred hccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccC Q psy13054 925 RRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVP 1003 (1128) Q Consensus 925 R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~ 1003 (1128) |++.++++.+++|.|.... ........+++|||+||||+|+||+++|+++++|||+|+.|+++.. ++ .+..++++++ T Consensus 116 R~~~~~~~~~r~g~w~~~~-~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~ 193 (324) T COG1052 116 RRIHEGDRRVREGNWSLSG-GPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD 193 (324) T ss_pred hchHHHHHHHhcCcccccC-CcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc Confidence 9999999999999998321 0111233489999999999999999999999999999998887765 44 4556688889 Q ss_pred hHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCc Q psy13054 1004 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 (1128) Q Consensus 1004 l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~p 1083 (1128) ++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+|||||||+.||.+.++| T Consensus 194 l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~ 273 (324) T COG1052 194 LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHP 273 (324) T ss_pred HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999 Q ss_pred cccCCC---eEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1084 LVQLDN---CVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1084 L~~~pN---vilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |+.++| |++|||+||+|.+++.+|++.+++||.+|++|++..++| T Consensus 274 l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~v 321 (324) T COG1052 274 LLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNEV 321 (324) T ss_pred HhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCCC Confidence 999888 999999999999999999999999999999999988875 |
|
>PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=4.8e-60 Score=535.63 Aligned_cols=275 Identities=29% Similarity=0.437 Sum_probs=247.2 Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128) .++..+.+++++++....+++++++++++ |+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++ T Consensus 33 ~~~~~~~~~~~d~ii~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~ 111 (311) T PRK08410 33 PEEVIERIKDANIIITNKVVIDKEVLSQL-PNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSL 111 (311) T ss_pred HHHHHHHhCCCCEEEECCCCCCHHHHhhC-CCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHH Confidence 34566667777755544568999999997 99999999999999999999999999999999999999999999999999 Q ss_pred HhccHHHHHHHHcCCCcccccc-ccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc Q psy13054 924 SRRFQEGRKCITSGEWALKQTH-IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128) Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~~~-~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128) .|++..+++.+++|.|...... .......+|+||||||||+|+||+++|+++++|||+|++||++.... ..+++++ T Consensus 112 ~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---~~~~~~~ 188 (311) T PRK08410 112 LGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---NEEYERV 188 (311) T ss_pred HhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---ccCceee Confidence 9999999999999999731100 00011348999999999999999999999999999999998754321 2356678 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) +|++++++||+|++|||+|++|+||||++.|++||||++|||+|||++||++||++||++|+|+ ||||||++||+|.++ T Consensus 189 ~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~ 267 (311) T PRK08410 189 SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNH 267 (311) T ss_pred cHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCC Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999 Q ss_pred ccccC---CCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC Q psy13054 1083 PLVQL---DNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1083 pL~~~---pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) |||++ |||++|||+||+|.++.+++.+.+++||.+|++|++ T Consensus 268 pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311) T PRK08410 268 PLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311) T ss_pred hhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC Confidence 99997 899999999999999999999999999999999874 |
|
>PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=1.3e-59 Score=533.39 Aligned_cols=275 Identities=28% Similarity=0.491 Sum_probs=247.6 Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128) .++..+.++++++++...+++++++++++ |+||||++.|+|+|++|+++|+++||.|+|+||+++.+||||++++||++ T Consensus 36 ~~~~~~~~~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~ 114 (317) T PRK06487 36 PEQVAERLRGAQVAISNKVALDAAALAAA-PQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLAL 114 (317) T ss_pred HHHHHHHhCCCeEEEEeCCCCCHHHHhhC-CCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHH Confidence 35667777777755444567999999997 99999999999999999999999999999999999999999999999999 Q ss_pred HhccHHHHHHHHcCCCccccccc-cCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc Q psy13054 924 SRRFQEGRKCITSGEWALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128) Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~~~~-~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128) .|++..+++.+++|.|.+..... ......+|+||||||||+|+||+++|+++++|||+|++||++.. . .....+ T Consensus 115 ~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~-~----~~~~~~ 189 (317) T PRK06487 115 ATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGR-P----ARPDRL 189 (317) T ss_pred HcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCC-c----cccccc Confidence 99999999999999997321000 00112489999999999999999999999999999999986532 1 123467 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) +|+|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.++ T Consensus 190 ~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~ 269 (317) T PRK06487 190 PLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGN 269 (317) T ss_pred CHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccc--CCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC Q psy13054 1083 PLVQ--LDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPM 1124 (1128) Q Consensus 1083 pL~~--~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l 1124 (1128) |||. +|||++|||+||+|.++.+++.+.+++||.+|++|+|+ T Consensus 270 pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~ 313 (317) T PRK06487 270 PLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL 313 (317) T ss_pred chhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC Confidence 9995 89999999999999999999999999999999999876 |
|
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
---|
Probab=100.00 E-value=6.2e-60 Score=533.81 Aligned_cols=302 Identities=33% Similarity=0.488 Sum_probs=251.1 Q ss_pred ccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128) .++++.+.++. ..|++..++......+ ++.+.++++|++++...+++++++++++ |+||+|+++|+||||||+++ T Consensus 10 ~~~~~~~~~l~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~vDl~a 84 (324) T COG1052 10 KLPPEVLERLK--EKFEVERYEDDLTPDT--ELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDNVDLEA 84 (324) T ss_pred cCCHHHHHHhh--ccEEEEEeccCCccch--HHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCcccHHH Confidence 57777778776 4489888876423333 7889999999999987889999999997 89999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128) |++|||.|+|+|+|++++||||+|+|||++.||+.++++++|++ +|.. . |....+ T Consensus 85 a~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g-~w~~----------~--------------~~~~~~ 139 (324) T COG1052 85 AKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREG-NWSL----------S--------------GGPDPL 139 (324) T ss_pred HHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcC-cccc----------c--------------CCcccc Confidence 99999999999999999999999999999999999999988774 3421 0 000012 Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128) Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128) .+....|||+||+|+|. ||++++++++||+|. T Consensus 140 ~~~~l~gktvGIiG~Gr---------------------------------IG~avA~r~~~Fgm~--------------- 171 (324) T COG1052 140 LGFDLRGKTLGIIGLGR---------------------------------IGQAVARRLKGFGMK--------------- 171 (324) T ss_pred cccCCCCCEEEEECCCH---------------------------------HHHHHHHHHhcCCCE--------------- Confidence 23345678999999873 688888888887653 Q ss_pred cccCCccccceeeccccccc-ccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc Q psy13054 282 WRMGSKTDTNHYFGYNWFER-SNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128) Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~-~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128) ++.|+++++ +.+++.+++|++|+||+++|||||+|||||++|+||||++.|++||+|++|||||||++ T Consensus 172 -----------v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~ 240 (324) T COG1052 172 -----------VLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240 (324) T ss_pred -----------EEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc Confidence 334444432 33556678999999999999999999999999999999999999999999999999999 Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhhhHHHHHHHHHHHHHHhhhccC Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPLVQLDNCEEFFEELFDKNFQSI 440 (1128) Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~~~~~n~~~~~~~~~~~~~~~~ 440 (1128) |||+||++||++|+|+||||||||+||.+.++||++++| T Consensus 241 VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~----------------------------------------- 279 (324) T COG1052 241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDN----------------------------------------- 279 (324) T ss_pred cCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccC----------------------------------------- Confidence 999999999999999999999999999766666666655 Q ss_pred CCCCCCCCCCceeEEeccccccccCccchhhhcccccccccc Q psy13054 441 DPPGAEPGSGQNLATTSKSCILKDKTLPRISASHLLPFKKYS 482 (1128) Q Consensus 441 ~~~~~~~~~~~nv~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1128) .|||++|||+||+|+|++.+++..+++|++.|. T Consensus 280 ---------~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~ 312 (324) T COG1052 280 ---------FPNVVLTPHIASATEEARKAMAELALENLEAFF 312 (324) T ss_pred ---------CCCEEEccccccccHHHHHHHHHHHHHHHHHHH Confidence 256888888888888888888888888887765 |
|
>PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=6.1e-59 Score=527.02 Aligned_cols=275 Identities=28% Similarity=0.417 Sum_probs=246.5 Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128) .++..+.++++++++...+++++++++++ |+||||++.++|+|+||+++|.++||.|+|+||+++.+||||++++||++ T Consensus 35 ~~~~~~~~~~~d~ii~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~ 113 (314) T PRK06932 35 AEQTIERAKDADIVITSKVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL 113 (314) T ss_pred hHHHHHHhCCCcEEEEeCCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHH Confidence 46677777788765555568999999997 99999999999999999999999999999999999999999999999999 Q ss_pred HhccHHHHHHHHcCCCcccc-ccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc Q psy13054 924 SRRFQEGRKCITSGEWALKQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128) Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~-~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128) .|++..+++.+++|.|.... .........+++||||||||+|+||+++|+++++|||+|++|++..... ....+. T Consensus 114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~~~~~ 189 (314) T PRK06932 114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CREGYT 189 (314) T ss_pred HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cccccC Confidence 99999999999999997311 0000112248999999999999999999999999999999987543211 122356 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) +|+|++++||||++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.++ T Consensus 190 ~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~ 269 (314) T PRK06932 190 PFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDN 269 (314) T ss_pred CHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccc----cCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC Q psy13054 1083 PLV----QLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1083 pL~----~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) ||| ++|||++|||+||+|.++++++.+.+++||.+|++|++ T Consensus 270 pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314) T PRK06932 270 PLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314) T ss_pred hhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC Confidence 999 49999999999999999999999999999999998864 |
|
>KOG0068|consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=1.2e-59 Score=509.73 Aligned_cols=330 Identities=26% Similarity=0.346 Sum_probs=270.5 Q ss_pred cccEEEEEeeccccccccccccccccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHH Q psy13054 18 HIEKLLLIVQNSHGISSFSRQGSRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVL 97 (1128) Q Consensus 18 ~~~~ll~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL 97 (1128) .|.++|+.+ .+.++.++.++. ..++++.+.. ++.||+++.++++|++|+++.+++++++| T Consensus 5 ~~~~il~~e---------------~~~~~~~~~l~~-~g~~v~~~~~----~~~eel~~~i~~~~aviVrs~tkvtadvl 64 (406) T KOG0068|consen 5 DMRKILVAE---------------SLDQACIEILKD-NGYQVEFKKN----LSLEELIEKIKDCDALIVRSKTKVTADVL 64 (406) T ss_pred CcceEEEec---------------ccchHHHHHHHh-cCceEEEecc----CCHHHHHHHhccCCEEEEEeCCeecHHHH Confidence 355677777 566677777762 3347776543 46789999999999999999999999999 Q ss_pred hccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccC Q psy13054 98 DRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALD 177 (1128) Q Consensus 98 ~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~ 177 (1128) +.+..+||+|+++|+|+||||+++|+++||.|+|+|.+|+.|+||++++|+++++|++++++..+++ T Consensus 65 ~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~------------- 131 (406) T KOG0068|consen 65 EAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKE------------- 131 (406) T ss_pred HhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeec------------- Confidence 9656799999999999999999999999999999999999999999999999999999998876654 Q ss_pred CCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHh Q psy13054 178 TKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEIN 257 (1128) Q Consensus 178 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va 257 (1128) ++|.. ..+.|.++.|||+|++|+|+ ||++++ T Consensus 132 g~wnr----------------~~~~G~el~GKTLgvlG~Gr---------------------------------IGseVA 162 (406) T KOG0068|consen 132 GKWNR----------------VKYLGWELRGKTLGVLGLGR---------------------------------IGSEVA 162 (406) T ss_pred Cceee----------------cceeeeEEeccEEEEeeccc---------------------------------chHHHH Confidence 34431 11223345667888887762 567777 Q ss_pred hhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCccccc Q psy13054 258 NSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQ 336 (1128) Q Consensus 258 ~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~ 336 (1128) +++++++| ++++||++.+. ..+.+|++.++|+|++++|||||+||||||+|+| T Consensus 163 ~r~k~~gm--------------------------~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~ 216 (406) T KOG0068|consen 163 VRAKAMGM--------------------------HVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEK 216 (406) T ss_pred HHHHhcCc--------------------------eEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhh Confidence 77766533 55677766544 4678899999999999999999999999999999 Q ss_pred ccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCC Q psy13054 337 LIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPAD 416 (1128) Q Consensus 337 lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t 416 (1128) |+|+++|++||+|+++||+|||++|||+||++||++|+++|||+|||++||+. T Consensus 217 lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~--------------------------- 269 (406) T KOG0068|consen 217 LLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPK--------------------------- 269 (406) T ss_pred ccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCc--------------------------- Confidence 99999999999999999999999999999999999999999999999999931 Q ss_pred hhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCceeEEeccccccccCccchhhhccccccccccCc--------cccc Q psy13054 417 HPLVQLDNCEEFFEELFDKNFQSIDPPGAEPGSGQNLATTSKSCILKDKTLPRISASHLLPFKKYSGV--------PRLF 488 (1128) Q Consensus 417 ~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 488 (1128) ++ ...++.++|||+.|||++|+|.||..+|+..+.+++-+|..- |.+- T Consensus 270 -----------~~-------------~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~~~~g~Vna~~v~ 325 (406) T KOG0068|consen 270 -----------NG-------------WDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYINGNSAGSVNAPEVA 325 (406) T ss_pred -----------cc-------------hhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhccCccceechhhhh Confidence 01 233778899999999999999999999999999999999764 3333 Q ss_pred ccCCcchhhHHHHHHHHH Q psy13054 489 ERSTPTQKAFIFHLLYFF 506 (1128) Q Consensus 489 ~~~~~~~~~~~~~~~~~~ 506 (1128) -++.+.-|.++--.+|.- T Consensus 326 ~~~l~~~~~~~~~a~~l~ 343 (406) T KOG0068|consen 326 LESLTELKPNIVLAEKLG 343 (406) T ss_pred hhhhhccCchhHHHHHHh Confidence 444455555555544443 |
|
>PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
---|
Probab=100.00 E-value=5.9e-58 Score=523.22 Aligned_cols=282 Identities=34% Similarity=0.515 Sum_probs=253.7 Q ss_pred chHHHHHhhccceeEEee-cCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKILY-TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~~-~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) .++..+.++++++.++.. +++++++++++ |+||||++.|+|+|+||+++|+++||.|+|+||+|+.+||||++++||+ T Consensus 36 ~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~ 114 (333) T PRK13243 36 REVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLA 114 (333) T ss_pred HHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHH Confidence 344566677777554433 57999999997 9999999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCC---cccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCC Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGP---NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGA 999 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~---~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~ 999 (1128) +.|++..+++.+++|.|.+... .+.+ ...+|+||||||||+|+||+.+|++|++|||+|++||++.........++ T Consensus 115 ~~R~~~~~~~~~~~g~W~~~~~-~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 193 (333) T PRK13243 115 TARRLVEADHFVRSGEWKRRGV-AWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGA 193 (333) T ss_pred HHhCHHHHHHHHHcCCCCcccc-ccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCC Confidence 9999999999999999973210 0111 23489999999999999999999999999999999987654333334566 Q ss_pred cccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCC Q psy13054 1000 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 1079 (1128) Q Consensus 1000 ~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~ 1079 (1128) ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++ T Consensus 194 ~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~ 273 (333) T PRK13243 194 EYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY 273 (333) T ss_pred EecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999998 Q ss_pred CCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1080 ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1080 ~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) ++|||++|||++|||+||+|.++.+++.+.+++||.+|++|+++.|.| T Consensus 274 -~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 321 (333) T PRK13243 274 -NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTLV 321 (333) T ss_pred -CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCccc Confidence 899999999999999999999999999999999999999999988865 |
|
>PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=1.3e-57 Score=524.80 Aligned_cols=279 Identities=28% Similarity=0.430 Sum_probs=252.6 Q ss_pred chHHHHHhhccceeEEee---cCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKILY---TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLA 920 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~~---~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alali 920 (1128) .++..+.++++++++... .++++++|+++ |+||||++.|+|+||||+++|.++||.|+|++|+|+.+||||++++| T Consensus 88 ~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~li 166 (386) T PLN03139 88 DCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRI 166 (386) T ss_pred HHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHH Confidence 346677777777655432 36999999997 99999999999999999999999999999999999999999999999 Q ss_pred HHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC Q psy13054 921 IAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA 999 (1128) Q Consensus 921 L~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~ 999 (1128) |++.|++.++++.+++|.|.... ......+|.||||||||+|+||+++|++|++|||+|++||+.....+ ....++ T Consensus 167 L~l~R~~~~~~~~~~~g~W~~~~---~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~ 243 (386) T PLN03139 167 LILLRNFLPGYHQVVSGEWNVAG---IAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGA 243 (386) T ss_pred HHHHcCcHHHHHHHHhCCCcccc---ccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCc Confidence 99999999999999999997310 11223489999999999999999999999999999999987653333 344566 Q ss_pred ccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC Q psy13054 1000 QLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 1078 (1128) Q Consensus 1000 ~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl 1078 (1128) .++ +++|++++||+|++|||++++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+ T Consensus 244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPl 323 (386) T PLN03139 244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPA 323 (386) T ss_pred eecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCC Confidence 654 8999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC Q psy13054 1079 PADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIY 1126 (1128) Q Consensus 1079 ~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~ 1126 (1128) |.++|||.+|||++|||+||.|.++++++.+.+++||.+|++|+++.. T Consensus 324 p~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~~ 371 (386) T PLN03139 324 PKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPA 371 (386) T ss_pred CCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCCC Confidence 999999999999999999999999999999999999999999998654 |
|
>PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=1.1e-57 Score=525.78 Aligned_cols=280 Identities=31% Similarity=0.455 Sum_probs=253.4 Q ss_pred chHHHHHhhccceeEEe---ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKIL---YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLA 920 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~---~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alali 920 (1128) .++..+.++++++.+.. ..++++++++++ |+||||+++|+|+||+|+++|.++||.|+|++++|+.+||||++++| T Consensus 81 ~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~ 159 (385) T PRK07574 81 DSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMI 159 (385) T ss_pred HHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHH Confidence 34556667777755443 146899999997 99999999999999999999999999999999999999999999999 Q ss_pred HHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC Q psy13054 921 IAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA 999 (1128) Q Consensus 921 L~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~ 999 (1128) |++.|++..+++.+++|+|.... ......+|+||||||||+|+||+++|++|++|||+|++||++..... ....++ T Consensus 160 L~l~R~~~~~~~~~~~g~W~~~~---~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~ 236 (385) T PRK07574 160 LALVRNYEPSHRQAVEGGWNIAD---CVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGL 236 (385) T ss_pred HHHHcCHHHHHHHHHhCCCCccc---ccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCc Confidence 99999999999999999997311 01123489999999999999999999999999999999997653333 334566 Q ss_pred cc-cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC Q psy13054 1000 QL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 1078 (1128) Q Consensus 1000 ~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl 1078 (1128) +. .+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||+ T Consensus 237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPl 316 (385) T PRK07574 237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPA 316 (385) T ss_pred eecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCC Confidence 54 68999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC Q psy13054 1079 PADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYE 1127 (1128) Q Consensus 1079 ~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~ 1127 (1128) |.+||||++|||++|||+||+|.++++++.+.+++||++|++|+++.|+ T Consensus 317 p~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~ 365 (385) T PRK07574 317 PADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE 365 (385) T ss_pred CCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC Confidence 9999999999999999999999999999999999999999999999886 |
|
>PLN02928 oxidoreductase family protein | Back alignment and domain information |
---|
Probab=100.00 E-value=3.7e-57 Score=518.68 Aligned_cols=275 Identities=25% Similarity=0.393 Sum_probs=250.7 Q ss_pred chHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCC---ChhHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHI---SSDTVAEYNIGLA 920 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~---~a~sVAE~alali 920 (1128) .++..+.+++++++....+++++++++.+ |+||||++.++|+|++|+++|.++||.|+|+|++ ++.+||||+++++ T Consensus 52 ~~e~~~~~~~~d~~i~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~ 130 (347) T PLN02928 52 REDVPDVIANYDICVPKMMRLDADIIARA-SQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLM 130 (347) T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHhcC-CCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHH Confidence 45677778888866555678999999997 9999999999999999999999999999999986 7899999999999 Q ss_pred HHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhh----- Q psy13054 921 IAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT----- 995 (1128) Q Consensus 921 L~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~----- 995 (1128) |++.|++..+.+.+++|.|.. +...+++|||+||||+|+||+.+|++|++|||+|++||++....... T Consensus 131 L~~~R~~~~~~~~~~~~~w~~-------~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~ 203 (347) T PLN02928 131 LGLLRKQNEMQISLKARRLGE-------PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP 203 (347) T ss_pred HHHHhCHHHHHHHHHcCCccc-------ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc Confidence 999999999999999999962 23347999999999999999999999999999999998764332211 Q ss_pred --------hcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 996 --------ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 996 --------~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) .......+|+|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++||++|+|+| T Consensus 204 ~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~g 283 (347) T PLN02928 204 NGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGG 283 (347) T ss_pred cccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeE Confidence 011255699999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC Q psy13054 1068 AGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIY 1126 (1128) Q Consensus 1068 aaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~ 1126 (1128) |+||||++||+|+++|||++|||++|||+||+|.++++++.+.+++||.+|+.|+++.| T Consensus 284 AaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 342 (347) T PLN02928 284 LAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTG 342 (347) T ss_pred EEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCCCCCc Confidence 99999999999999999999999999999999999999999999999999999998875 |
|
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=4.7e-57 Score=527.86 Aligned_cols=276 Identities=28% Similarity=0.416 Sum_probs=249.9 Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) .++..+.++++++..+. .+++++++++++ |+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+ T Consensus 44 ~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~ 122 (409) T PRK11790 44 EEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIL 122 (409) T ss_pred HHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHH Confidence 45666777777765433 358999999997 9999999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc- Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL- 1001 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~- 1001 (1128) +.|++..+++.+++|.|.+. .....+|.|||+||||+|+||+++|+++++|||+|++||++.... ..++.. T Consensus 123 ~~R~~~~~~~~~~~g~w~~~-----~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~---~~~~~~~ 194 (409) T PRK11790 123 LLRGIPEKNAKAHRGGWNKS-----AAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP---LGNARQV 194 (409) T ss_pred HHcChHHHHHHHHcCccccc-----ccCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc---cCCceec Confidence 99999999999999999731 123358999999999999999999999999999999999753221 123444 Q ss_pred cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC- Q psy13054 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA- 1080 (1128) Q Consensus 1002 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~- 1080 (1128) .+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+|. T Consensus 195 ~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~ 274 (409) T PRK11790 195 GSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNG 274 (409) T ss_pred CCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCcc Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999999987 Q ss_pred ---CCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1081 ---DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1081 ---~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) ++|||++|||++|||+||+|.++++++.+.+++|+.+|+.|+++.+.| T Consensus 275 ~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~v 325 (409) T PRK11790 275 DPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAV 325 (409) T ss_pred ccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcce Confidence 479999999999999999999999999999999999999999988764 |
|
>KOG0068|consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=1.7e-57 Score=492.98 Aligned_cols=274 Identities=29% Similarity=0.415 Sum_probs=258.5 Q ss_pred CchHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHH Q psy13054 843 IGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 (1128) Q Consensus 843 ~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL 921 (1128) +-+|+++.+++++..++. .+++++++|+.+..+||+|+++|+|+||+|+++|.++||.|.|+|.+|+.++||+++++++ T Consensus 37 ~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~ 116 (406) T KOG0068|consen 37 SLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLIL 116 (406) T ss_pred CHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHH Confidence 445888889998855554 7999999999654899999999999999999999999999999999999999999999999 Q ss_pred HHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc Q psy13054 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001 (1128) Q Consensus 922 ~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~ 1001 (1128) ++.|+++++...+++|+|.+. ...+.+++|||+||+|+|+||+.+|++++++||+|+.||+..+.+.....|++. T Consensus 117 SLaR~i~~A~~s~k~g~wnr~-----~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~ 191 (406) T KOG0068|consen 117 SLARQIGQASASMKEGKWNRV-----KYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQL 191 (406) T ss_pred HHhhhcchhheeeecCceeec-----ceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhcccee Confidence 999999999999999999842 234448999999999999999999999999999999999999988888899999 Q ss_pred cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC- Q psy13054 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA- 1080 (1128) Q Consensus 1002 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~- 1080 (1128) ++++|+++.||||++|||+||+|++|+|.+.|++||+|..+||+|||++||++||++||++|+++|||+|||+.||... T Consensus 192 vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~ 271 (406) T KOG0068|consen 192 VSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNG 271 (406) T ss_pred eeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccc Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999655 Q ss_pred -CCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcC Q psy13054 1081 -DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKG 1121 (1128) Q Consensus 1081 -~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G 1121 (1128) ++.|.++|||++|||+|++|.|++.+++..+++++.+|.+| T Consensus 272 ~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406) T KOG0068|consen 272 WDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406) T ss_pred hhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc Confidence 88999999999999999999999999999999999999988 |
|
>PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
---|
Probab=100.00 E-value=3.1e-56 Score=515.11 Aligned_cols=278 Identities=29% Similarity=0.406 Sum_probs=246.5 Q ss_pred chHHHHHh-hccceeEEe-ecCCChhhhhcCCCC--ccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHH Q psy13054 844 GLETAKLL-KAFKVSKIL-YTSRNKVKTPKRTEN--LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGL 919 (1128) Q Consensus 844 ~~e~~~~l-~~~~~~~~~-~~~i~~~~l~~~~~~--LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alal 919 (1128) .+++.+.+ .++++.++. .+++++++++++ |+ ||+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++ T Consensus 52 ~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~-~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~l 130 (386) T PLN02306 52 VEDIIALIGDKCDGVIGQLTEDWGETLFSAL-SKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASL 130 (386) T ss_pred HHHHHHHhhcCCcEEEEcCCCCcCHHHHHhC-CcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHH Confidence 44566665 457754443 457999999998 74 79999999999999999999999999999999999999999999 Q ss_pred HHHHHhccHHHHHHHHcCCCccccccccCC---cccccCCCeEEEEEcChhhHHHHHHHh-hCCCEEEEEeCCCCchhh- Q psy13054 920 AIAVSRRFQEGRKCITSGEWALKQTHIIGP---NIMGLKGATVGIVGLGNIGLETAKLLK-AFKVSKILYTSRRVKEEG- 994 (1128) Q Consensus 920 iL~~~R~i~~~~~~~~~g~w~~~~~~~~~~---~~~~L~gktvGIIG~G~IG~~vA~~l~-afG~~Vi~~d~~~~~~~~- 994 (1128) ||++.|++..+++.+++|.|. .|.+ ...++.||||||||+|+||+++|++++ +|||+|++||++...... T Consensus 131 iLal~R~i~~~~~~~~~g~w~-----~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~ 205 (386) T PLN02306 131 SLAAARRIVEADEFMRAGLYE-----GWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEK 205 (386) T ss_pred HHHHHhChHHHHHHHHcCCCc-----cccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhh Confidence 999999999999999999985 2221 234899999999999999999999985 999999999987542211 Q ss_pred --hhcC------------Ccc-cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHH Q psy13054 995 --TALG------------AQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128) Q Consensus 995 --~~~g------------~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128) ...+ ++. .+|+|++++||||++|||+|++|+||||++.|++||+|++|||+|||++||++||++| T Consensus 206 ~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~A 285 (386) T PLN02306 206 FVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEH 285 (386) T ss_pred hhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHH Confidence 1111 222 4899999999999999999999999999999999999999999999999999999999 Q ss_pred HhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1060 LKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1060 L~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |++|+|+|||||||++||++ ++|||++|||++|||+||+|.++++++.+.+++||.+|++|+++.|.| T Consensus 286 L~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~ 353 (386) T PLN02306 286 LKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDP 353 (386) T ss_pred HHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCcccc Confidence 99999999999999999975 579999999999999999999999999999999999999999998875 |
|
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=100.00 E-value=1.8e-56 Score=506.13 Aligned_cols=292 Identities=29% Similarity=0.425 Sum_probs=241.5 Q ss_pred ccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128) .+.++.++.++.. .++..... ...+.+++.+.++++|++++ +.+++++++++.+ ++||+|++.|+|+||||+++ T Consensus 11 ~~~~~~~~~l~~~--~~~~~~~~--~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~id~~~ 84 (324) T COG0111 11 PLAPDALEELLAA--YDVEVPDG--PDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDNIDLEA 84 (324) T ss_pred ccCHHHHHHHHhc--cccccccc--cccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccccCHHH Confidence 4556666665422 23333221 23456779999999999998 6789999999986 79999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128) ++++||.|+|+|+.|+.+||||++++||+++|+++.++++.++ +.|..+ .+ T Consensus 85 ~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~-------------g~W~~~----------------~~ 135 (324) T COG0111 85 ATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRR-------------GEWDRK----------------AF 135 (324) T ss_pred HhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHc-------------CCcccc----------------cc Confidence 9999999999999999999999999999999999999887754 334320 11 Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128) Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128) .|.++.|||+||||+|+ ||+++++++++|+| T Consensus 136 ~g~el~gkTvGIiG~G~---------------------------------IG~~va~~l~afgm---------------- 166 (324) T COG0111 136 RGTELAGKTVGIIGLGR---------------------------------IGRAVAKRLKAFGM---------------- 166 (324) T ss_pred ccccccCCEEEEECCCH---------------------------------HHHHHHHHHHhCCC---------------- Confidence 23345679999999974 68889999988764 Q ss_pred cccCCccccceeeccccccccc-ccccCCc-ccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCC Q psy13054 282 WRMGSKTDTNHYFGYNWFERSN-GTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 359 (1128) Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~~~-~~~~g~~-~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~ 359 (1128) ++++||++.... +...++. ..+||+||++|||||+|+|+|++|+||||++.|++||+|++|||+|||+ T Consensus 167 ----------~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~ 236 (324) T COG0111 167 ----------KVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGG 236 (324) T ss_pred ----------eEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcc Confidence 456777654432 3333343 4579999999999999999999999999999999999999999999999 Q ss_pred ccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH Q psy13054 360 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128) Q Consensus 360 lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128) +|||+||++||++|+|+||+||||++||+|.+||||++||| ++|||++++|.+ ..+.+|+..|..+.. T Consensus 237 vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV------~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~ 310 (324) T COG0111 237 VVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNV------ILTPHIGGSTDEAQERVAEIVAENIVRYLAGGP 310 (324) T ss_pred eecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCe------EECCcccccCHHHHHHHHHHHHHHHHHHHcCCC Confidence 99999999999999999999999999999999999999999 999999999985 344677777666654 |
|
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=5.3e-56 Score=504.18 Aligned_cols=294 Identities=27% Similarity=0.391 Sum_probs=240.4 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128) +.++.++.|. ..+++..++. ....+.+++.+.++++|+++++. .++++++++++ |+||+|+++|+|+||||+++| T Consensus 11 ~~~~~~~~l~--~~~~v~~~~~-~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d~id~~~~ 85 (323) T PRK15409 11 LPDDLLQRLE--EHFTVTQVAN-LSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYDNFDVDAL 85 (323) T ss_pred CCHHHHHHHH--hcCcEEEcCC-CCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceecccccHHHH Confidence 3445555554 3467765542 12235678999999999999864 58999999986 899999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128) +++||.|+|+|++++++||||++++||+++|++..+++.++++ .|.... +..+. T Consensus 86 ~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g-------------~w~~~~-------------~~~~~ 139 (323) T PRK15409 86 TARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAG-------------EWTASI-------------GPDWF 139 (323) T ss_pred HHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcC-------------CCcccC-------------ccccc Confidence 9999999999999999999999999999999999988877653 232100 00011 Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhcc-CCceeeeeeCCCCCCCCccc Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLK-GSDIFEFFLGPKKNGSQNPK 281 (1128) Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~-g~~~~~~ilG~g~iG~~va~ 281 (1128) |..+.|||+||+|+|+ ||++++++++ +|+|. T Consensus 140 g~~L~gktvGIiG~G~---------------------------------IG~~va~~l~~~fgm~--------------- 171 (323) T PRK15409 140 GTDVHHKTLGIVGMGR---------------------------------IGMALAQRAHFGFNMP--------------- 171 (323) T ss_pred cCCCCCCEEEEEcccH---------------------------------HHHHHHHHHHhcCCCE--------------- Confidence 2346679999999973 6888888887 77653 Q ss_pred cccCCccccceeecccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc Q psy13054 282 WRMGSKTDTNHYFGYNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128) Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128) +++|+++.+. .....++++++|+||+++|||||+|||+|++|+||||++.|++||||++|||||||++ T Consensus 172 -----------V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~v 240 (323) T PRK15409 172 -----------ILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPV 240 (323) T ss_pred -----------EEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccc Confidence 2334433222 2234577889999999999999999999999999999999999999999999999999 Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) |||+||++||++|+|+|||||||++||+|.++|||++||| ++|||+++.|.+ ...++|+.+|+++. T Consensus 241 Vde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 312 (323) T PRK15409 241 VDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNV------VAVPHIGSATHETRYNMAACAVDNLIDALQGK 312 (323) T ss_pred cCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCE------EEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCC Confidence 9999999999999999999999999999999999999999 999999999875 33467777777654 |
|
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
---|
Probab=100.00 E-value=9.9e-56 Score=532.43 Aligned_cols=278 Identities=32% Similarity=0.494 Sum_probs=254.0 Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) .++..+.++++++..+. .+++++++++++ |+||||+++|+|+||+|+++|.++||.|+|+|++|+.+||||++++||+ T Consensus 31 ~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~ 109 (525) T TIGR01327 31 REELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLA 109 (525) T ss_pred HHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHH Confidence 45666777777765443 357999999997 9999999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128) +.|+++.+++.+++|+|.+. .....+|+||||||||+|+||+++|++|++|||+|++||++.......+.++..+ T Consensus 110 ~~R~~~~~~~~~~~g~W~~~-----~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~ 184 (525) T TIGR01327 110 AARNIPQADASLKEGEWDRK-----AFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELV 184 (525) T ss_pred HhcCHHHHHHHHHcCCcccc-----ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEc Confidence 99999999999999999731 1223489999999999999999999999999999999998654433455677655 Q ss_pred -ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC Q psy13054 1003 -PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128) Q Consensus 1003 -~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128) +++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||+ .+ T Consensus 185 ~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~-~~ 263 (525) T TIGR01327 185 DDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP-TD 263 (525) T ss_pred CCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC-CC Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999995 58 Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) +|||++|||++|||+||+|.++++++++.+++|+.+|++|+++.|.| T Consensus 264 ~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 310 (525) T TIGR01327 264 NPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAV 310 (525) T ss_pred ChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCcee Confidence 99999999999999999999999999999999999999999988765 |
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=2.8e-55 Score=528.62 Aligned_cols=278 Identities=34% Similarity=0.511 Sum_probs=255.4 Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) .++..+.++++++.++. .+++++++++++ |+||||++.|+|+||+|+++|+++||.|+|+|++++.+||||++++||+ T Consensus 33 ~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~ 111 (526) T PRK13581 33 KEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLA 111 (526) T ss_pred HHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHH Confidence 45666777777765443 358999999997 9999999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128) +.|+++.+++.+++|.|.+. .....+|+||||||||+|+||+.+|++|++|||+|++||++.......+.+++++ T Consensus 112 ~~R~~~~~~~~~~~g~W~~~-----~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~ 186 (526) T PRK13581 112 LARNIPQAHASLKAGKWERK-----KFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELV 186 (526) T ss_pred HHcCHHHHHHHHHcCCCCcc-----CccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEE Confidence 99999999999999999731 1223489999999999999999999999999999999998654433455677778 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) +++|++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+|||||||++||++ ++ T Consensus 187 ~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~ 265 (526) T PRK13581 187 SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DS 265 (526) T ss_pred cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-Cc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 89 Q ss_pred ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1083 PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1083 pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |||++|||++|||+||+|.++++++++.+++|+.+|++|+++.|.| T Consensus 266 pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 311 (526) T PRK13581 266 PLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAV 311 (526) T ss_pred hhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCcee Confidence 9999999999999999999999999999999999999999988865 |
|
>PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=6.1e-55 Score=494.03 Aligned_cols=287 Identities=25% Similarity=0.397 Sum_probs=233.1 Q ss_pred hhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhC Q psy13054 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSR 125 (1128) Q Consensus 46 ~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~er 125 (1128) +.++.++ +.+++..++. .+.+++.+.++++|+++++ ..++++++|+++ |+||+|+++|+|+||||+++|+++ T Consensus 14 ~~~~~l~--~~~~~~~~~~----~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~ 85 (311) T PRK08410 14 KDLSVFE--EFGDFQIYPT----TSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDIEYAKKK 85 (311) T ss_pred hhHHHHh--hCceEEEeCC----CCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccHHHHHhC Confidence 3344443 3356665542 2467899999999999986 468999999986 799999999999999999999999 Q ss_pred CcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccc Q psy13054 126 GIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKY 205 (1128) Q Consensus 126 GI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 205 (1128) ||.|+|+||+++++||||+++|||+++|++..+++.++++ .| ..... .. ..++ .+.. T Consensus 86 gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g-~w------------~~~~~-~~-----~~~~----~~~~ 142 (311) T PRK08410 86 GIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSG-EY------------SESPI-FT-----HISR----PLGE 142 (311) T ss_pred CCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcC-CC------------CcCCC-cc-----ccCc----cccc Confidence 9999999999999999999999999999999988877653 23 21000 00 0000 1234 Q ss_pred cccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccC Q psy13054 206 STHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMG 285 (1128) Q Consensus 206 ~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g 285 (1128) +.|||+||+|+|+ ||+++++++++|+|. T Consensus 143 L~gktvGIiG~G~---------------------------------IG~~vA~~~~~fgm~------------------- 170 (311) T PRK08410 143 IKGKKWGIIGLGT---------------------------------IGKRVAKIAQAFGAK------------------- 170 (311) T ss_pred cCCCEEEEECCCH---------------------------------HHHHHHHHHhhcCCE------------------- Confidence 5678999999973 688889998887653 Q ss_pred CccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHH Q psy13054 286 SKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 (1128) Q Consensus 286 ~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~A 365 (1128) +++|+++.+. ...++++++|+||+++|||||+|||+|++|+||||++.|++||||++|||+|||++|||+| T Consensus 171 -------V~~~d~~~~~--~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~A 241 (311) T PRK08410 171 -------VVYYSTSGKN--KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKD 241 (311) T ss_pred -------EEEECCCccc--cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHH Confidence 3445543221 1235678899999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHcCCeeEEEEecCCCCCCCCCCCcccC---CCCCCCCcccccccCCCCChh------hhHHHHHHHHHHH Q psy13054 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL---DNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEE 431 (1128) Q Consensus 366 L~~AL~sG~IagAaLDVfe~EPl~~~~pL~~l---pNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~ 431 (1128) |++||++|+|+ ||||||++||++.+||||.+ ||| ++|||+++.|.+ ...++|+.+|+++ T Consensus 242 L~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~Nv------ilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g 309 (311) T PRK08410 242 LAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKL------LITPHIAWASKEARKTLIEKVKENIKDFLEG 309 (311) T ss_pred HHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCE------EECCccccCCHHHHHHHHHHHHHHHHHHHcC Confidence 99999999999 99999999999999999997 899 999999999875 3456777776653 |
|
>PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=2e-53 Score=484.78 Aligned_cols=280 Identities=22% Similarity=0.316 Sum_probs=251.2 Q ss_pred CCCchHHHHHhhccceeEEe-ecCCChhhhhcCCC--CccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHH Q psy13054 841 GNIGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTE--NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNI 917 (1128) Q Consensus 841 ~~~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~--~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~al 917 (1128) ..+.++..+.+++++++++. .+++++++++++ | +||+|++.++|+|+||+++|+++||.|+|+|++++++||||++ T Consensus 33 ~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~ 111 (330) T PRK12480 33 ELLSSATVDQLKDYDGVTTMQFGKLENDVYPKL-ESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSV 111 (330) T ss_pred CCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhh-hhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHH Confidence 34577788899999976654 468999999997 6 8999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhc Q psy13054 918 GLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTAL 997 (1128) Q Consensus 918 aliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~ 997 (1128) +++|++.|++..+++.+++|.|... . .....+|+|++|||||+|.||+.+|++|++|||+|++||++...... T Consensus 112 ~l~L~~~R~~~~~~~~~~~~~~~w~---~-~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~--- 184 (330) T PRK12480 112 SIALQLVRRFPDIERRVQAHDFTWQ---A-EIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD--- 184 (330) T ss_pred HHHHHHHHhHHHHHHHHHhCCcccc---c-ccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh--- Confidence 9999999999999999999977410 0 11234899999999999999999999999999999999976543221 Q ss_pred CCcc-cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC Q psy13054 998 GAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 1076 (1128) Q Consensus 998 g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E 1076 (1128) ..++ .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||.+||++||+++|++|+|+|||||||++| T Consensus 185 ~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~E 264 (330) T PRK12480 185 FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENE 264 (330) T ss_pred hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCC Confidence 1233 389999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCC-------------CCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1077 PLP-------------ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1077 Pl~-------------~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |++ ..+|||++|||++|||+||+|.++++++.+.+++|+.+|++|++..++| T Consensus 265 P~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 329 (330) T PRK12480 265 AAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCETRL 329 (330) T ss_pred CccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCCCCcccC Confidence 962 1247999999999999999999999999999999999999999998875 |
|
>PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=2.7e-53 Score=481.78 Aligned_cols=268 Identities=25% Similarity=0.398 Sum_probs=222.9 Q ss_pred CHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHH Q psy13054 70 PRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAI 149 (1128) Q Consensus 70 ~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL 149 (1128) +.+++.+.++++|+++.+ ..++++++++++ |+||+|+++|+|+||||+++|+++||.|+|+||+++++||||++++|| T Consensus 35 ~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L 112 (317) T PRK06487 35 TPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLL 112 (317) T ss_pred CHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHH Confidence 468899999999998875 468999999986 899999999999999999999999999999999999999999999999 Q ss_pred HHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCccc Q psy13054 150 AVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKW 229 (1128) Q Consensus 150 ~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w 229 (1128) +++|++..+++.++++ .|..... .. .....+..+.|||+||+|+|+ T Consensus 113 ~~~R~~~~~~~~~~~g-------------~W~~~~~-~~---------~~~~~~~~l~gktvgIiG~G~----------- 158 (317) T PRK06487 113 ALATRLPDYQQAVAAG-------------RWQQSSQ-FC---------LLDFPIVELEGKTLGLLGHGE----------- 158 (317) T ss_pred HHHcCHHHHHHHHHcC-------------CCccCcc-cc---------cccCcccccCCCEEEEECCCH----------- Confidence 9999999988776653 2321000 00 000112345678999999973 Q ss_pred ccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCC Q psy13054 230 RMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGA 309 (1128) Q Consensus 230 ~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~ 309 (1128) ||+++++++++|+|. +++|+++.+. ..+ T Consensus 159 ----------------------IG~~vA~~l~~fgm~--------------------------V~~~~~~~~~----~~~ 186 (317) T PRK06487 159 ----------------------LGGAVARLAEAFGMR--------------------------VLIGQLPGRP----ARP 186 (317) T ss_pred ----------------------HHHHHHHHHhhCCCE--------------------------EEEECCCCCc----ccc Confidence 688899999887653 3334432211 124 Q ss_pred cccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCC Q psy13054 310 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 389 (1128) Q Consensus 310 ~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~ 389 (1128) ++++|+|++++|||||+|||||++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++ T Consensus 187 ~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~ 266 (317) T PRK06487 187 DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPV 266 (317) T ss_pred cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCC Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCccc--CCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHH Q psy13054 390 ADHPLVQ--LDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEE 431 (1128) Q Consensus 390 ~~~pL~~--lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~ 431 (1128) .+||||. +||| ++|||++++|.+ ....+|+.+|+++ T Consensus 267 ~~~pl~~~~~pnv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g 310 (317) T PRK06487 267 NGNPLLAPDIPRL------IVTPHSAWGSREARQRIVGQLAENARAFFAG 310 (317) T ss_pred CCCchhhcCCCCE------EECCccccCCHHHHHHHHHHHHHHHHHHHcC Confidence 9999995 8999 999999999875 3345666666654 |
|
>PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=5.1e-53 Score=478.67 Aligned_cols=268 Identities=26% Similarity=0.357 Sum_probs=221.4 Q ss_pred CHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHH Q psy13054 70 PRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAI 149 (1128) Q Consensus 70 ~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL 149 (1128) +.+++.+.++++|++++. ..++++++++++ |+||+|+++|+|+||||+++|+++||.|+|+||+++++||||++++|| T Consensus 34 ~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l 111 (314) T PRK06932 34 SAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIF 111 (314) T ss_pred ChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHH Confidence 578899999999998874 568999999986 899999999999999999999999999999999999999999999999 Q ss_pred HHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCccc Q psy13054 150 AVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKW 229 (1128) Q Consensus 150 ~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w 229 (1128) ++.|+++..++.++++ .|..... +. .....+..+.|||+||+|+|+ T Consensus 112 ~~~R~~~~~~~~~~~~-------------~W~~~~~-~~---------~~~~~~~~l~gktvgIiG~G~----------- 157 (314) T PRK06932 112 ALKHSLMGWYRDQLSD-------------RWATCKQ-FC---------YFDYPITDVRGSTLGVFGKGC----------- 157 (314) T ss_pred HHHhChHHHHHHHHcC-------------CCCcCcc-cc---------ccCCcccccCCCEEEEECCCH----------- Confidence 9999999888766542 2321000 00 000112235678999999973 Q ss_pred ccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCC Q psy13054 230 RMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGA 309 (1128) Q Consensus 230 ~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~ 309 (1128) ||+++++++++|+|. +++|++... ..... T Consensus 158 ----------------------IG~~va~~l~~fg~~--------------------------V~~~~~~~~---~~~~~ 186 (314) T PRK06932 158 ----------------------LGTEVGRLAQALGMK--------------------------VLYAEHKGA---SVCRE 186 (314) T ss_pred ----------------------HHHHHHHHHhcCCCE--------------------------EEEECCCcc---ccccc Confidence 688899998888664 223332211 11122 Q ss_pred cccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCC Q psy13054 310 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 389 (1128) Q Consensus 310 ~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~ 389 (1128) .+++|+|+|++|||||+|||||++|+||||++.|++||||++|||+|||++|||+||++||++|+|+||+||||++||++ T Consensus 187 ~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~ 266 (314) T PRK06932 187 GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPE 266 (314) T ss_pred ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCC Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCcc----cCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHH Q psy13054 390 ADHPLV----QLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFE 430 (1128) Q Consensus 390 ~~~pL~----~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~ 430 (1128) .++||| ++||| ++|||++++|.+ ...++|+.+|++ T Consensus 267 ~~~pl~~~~~~~pnv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~ 311 (314) T PRK06932 267 KDNPLIQAAKRLPNL------LITPHIAWASDSAVTTLVNKVAQNIEEFVQ 311 (314) T ss_pred CCChhhHhhcCCCCE------EECCccccCcHHHHHHHHHHHHHHHHHHHh Confidence 999998 59999 999999999875 334667777664 |
|
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=8.7e-53 Score=492.01 Aligned_cols=288 Identities=25% Similarity=0.345 Sum_probs=234.0 Q ss_pred chhhhhhhhccCCc-eEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH Q psy13054 44 VPESLSKLRFNSRF-DIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 44 ~~~~l~~l~~~~~~-~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128) .++.++.++. ..+ ++..++. ..+.+++.+.++++|+++++..+++++++|+++ |+||+|+++|+|+||||+++| T Consensus 20 ~~~~~~~l~~-~~~~~v~~~~~---~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~ 94 (409) T PRK11790 20 HQSAVEVLRA-AGYTNIEYHKG---ALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIGTNQVDLDAA 94 (409) T ss_pred CHHHHHHHHh-cCCceEEECCC---CCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECceecccccHHHH Confidence 3444555531 235 6665542 246788999999999998876678999999986 899999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128) +++||.|+|+||+++++||||++++||+++|++..++++++++ .|... ... T Consensus 95 ~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g-------------~w~~~----------------~~~ 145 (409) T PRK11790 95 AKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG-------------GWNKS----------------AAG 145 (409) T ss_pred HhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcC-------------ccccc----------------ccC Confidence 9999999999999999999999999999999999988877653 33210 011 Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128) Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128) +.++.|||+||+|+|+ ||+++++++++|++. T Consensus 146 ~~~L~gktvGIiG~G~---------------------------------IG~~vA~~~~~fGm~---------------- 176 (409) T PRK11790 146 SFEVRGKTLGIVGYGH---------------------------------IGTQLSVLAESLGMR---------------- 176 (409) T ss_pred cccCCCCEEEEECCCH---------------------------------HHHHHHHHHHHCCCE---------------- Confidence 2345678999999973 688889998887654 Q ss_pred ccCCccccceeecccccccccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCcc Q psy13054 283 RMGSKTDTNHYFGYNWFERSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 361 (1128) Q Consensus 283 ~~g~~~~~~~~~g~~~~~~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lV 361 (1128) +++|+++... ...+++++ +|+||+++|||||+|||+|++|+||||++.|++||+|++|||+|||++| T Consensus 177 ----------V~~~d~~~~~--~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v 244 (409) T PRK11790 177 ----------VYFYDIEDKL--PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVV 244 (409) T ss_pred ----------EEEECCCccc--ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCccc Confidence 3444432211 11134444 9999999999999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHcCCeeEEEEecCCCCCCCC----CCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHH Q psy13054 362 DQEALVEFLKDKKIGGAGLDVMIPEPLPA----DHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEE 431 (1128) Q Consensus 362 De~AL~~AL~sG~IagAaLDVfe~EPl~~----~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~ 431 (1128) ||+||++||++|+|+|||||||++||++. ++|||++||| ++|||++++|.+ ....+|+..|+++ T Consensus 245 de~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nv------ilTPHia~~t~ea~~~~~~~~~~nl~~~~~~ 318 (409) T PRK11790 245 DIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNV------ILTPHIGGSTQEAQENIGLEVAGKLVKYSDN 318 (409) T ss_pred CHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCE------EECCcCCCCHHHHHHHHHHHHHHHHHHHHcC Confidence 99999999999999999999999999876 4799999999 999999999874 3345666666654 Q ss_pred H Q psy13054 432 L 432 (1128) Q Consensus 432 ~ 432 (1128) . T Consensus 319 ~ 319 (409) T PRK11790 319 G 319 (409) T ss_pred C Confidence 3 |
|
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=1.3e-52 Score=474.40 Aligned_cols=253 Identities=22% Similarity=0.291 Sum_probs=225.8 Q ss_pred ChhhhhcCCCCccEEEEccccCCcCChhh-----hhhCCcEEEEcCC-CChhHHHHHHHHHHHHHHhccHHHHHHHHcCC Q psy13054 865 NKVKTPKRTENLKVITTFSVGYDHLELHE-----IKARGIRVGSVGH-ISSDTVAEYNIGLAIAVSRRFQEGRKCITSGE 938 (1128) Q Consensus 865 ~~~~l~~~~~~LK~I~~~~aGvd~idl~a-----~~~~GI~V~n~p~-~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~ 938 (1128) +.+.++ . ++||||++.|+|+|++|.+. +.++||.|+|+++ .++.+||||+++++|++.|+++.+.+.+++|. T Consensus 48 ~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~ 125 (312) T PRK15469 48 PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSH 125 (312) T ss_pred ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCC Confidence 556675 4 89999999999999998332 4458999999864 68999999999999999999999999999999 Q ss_pred CccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEec Q psy13054 939 WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 939 w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~l 1018 (1128) |.. ....+++||||||||+|+||+++|++|++|||+|++||++..............++++++++||+|++|+ T Consensus 126 w~~-------~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~l 198 (312) T PRK15469 126 WQP-------LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLL 198 (312) T ss_pred cCC-------CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECC Confidence 972 1234789999999999999999999999999999999875543221111123458999999999999999 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCC Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag 1098 (1128) |+|++|+++||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+|.++|||++|||++|||+|| T Consensus 199 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag 278 (312) T PRK15469 199 PNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAA 278 (312) T ss_pred CCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1099 ATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1099 ~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) .|.+. ++.+.+.+|+++|++|+++.|+| T Consensus 279 ~t~~~--~~~~~~~~n~~~~~~g~~~~~~V 306 (312) T PRK15469 279 VTRPA--EAVEYISRTIAQLEKGERVCGQV 306 (312) T ss_pred CcCHH--HHHHHHHHHHHHHHcCCCCcccC Confidence 99874 68999999999999999999876 |
|
>PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=4.4e-52 Score=474.98 Aligned_cols=277 Identities=21% Similarity=0.328 Sum_probs=250.0 Q ss_pred CchHHHHHhhccceeEEe-ecCCChhhhhcCCCC--ccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHH Q psy13054 843 IGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTEN--LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGL 919 (1128) Q Consensus 843 ~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~--LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alal 919 (1128) ..+|..+.+++++.+++. .+++++++|+++ |+ ||+|++.|+|+|++|+++|+++||.|+|+|++++.+||||++++ T Consensus 35 ~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~ 113 (332) T PRK08605 35 LTDDNVEEVEGFDGLSLSQQIPLSEAIYKLL-NELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQ 113 (332) T ss_pred CCHHHHHHhcCCCEEEEecCCCCCHHHHHhh-hhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHH Confidence 456777788888865553 578999999997 76 99999999999999999999999999999999999999999999 Q ss_pred HHHHHhccHHHHHHHHcCCCccccccccCC--cccccCCCeEEEEEcChhhHHHHHHH-hhCCCEEEEEeCCCCchhhhh Q psy13054 920 AIAVSRRFQEGRKCITSGEWALKQTHIIGP--NIMGLKGATVGIVGLGNIGLETAKLL-KAFKVSKILYTSRRVKEEGTA 996 (1128) Q Consensus 920 iL~~~R~i~~~~~~~~~g~w~~~~~~~~~~--~~~~L~gktvGIIG~G~IG~~vA~~l-~afG~~Vi~~d~~~~~~~~~~ 996 (1128) +|++.|++..+++.+++|.|. |.. ...+|+|++|||||+|.||+++|++| ++|||+|++||++..... . T Consensus 114 ~l~~~R~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~ 185 (332) T PRK08605 114 AINLVRHFNQIQTKVREHDFR------WEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A 185 (332) T ss_pred HHHHhcChHHHHHHHHhCCcc------cccccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--H Confidence 999999999999999999885 222 23489999999999999999999999 899999999987654332 1 Q ss_pred cCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 997 LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 997 ~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) ..+... ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||.++|+++|+++|++|+|+||+||||+. T Consensus 186 ~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~ 265 (332) T PRK08605 186 TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEF 265 (332) T ss_pred hhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccC Confidence 234444 8999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CC--CCCCC-----------ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1076 EP--LPADH-----------PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1076 EP--l~~~~-----------pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) || +|.++ |||++|||++|||+||+|.++++++...+++|+.+|++|++..|+| T Consensus 266 Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~ 331 (332) T PRK08605 266 ERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRV 331 (332) T ss_pred CCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCc Confidence 98 56665 4999999999999999999999999999999999999999998875 |
|
>KOG0069|consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=1.3e-52 Score=468.28 Aligned_cols=263 Identities=44% Similarity=0.679 Sum_probs=240.3 Q ss_pred ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCc Q psy13054 861 YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWA 940 (1128) Q Consensus 861 ~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~ 940 (1128) ....+.+.+.+..|+||+|+++|+|+||||+++|++|||+|+|+|+.++++|||++++++|.+.|++...++.+++|+|. T Consensus 70 ~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~ 149 (336) T KOG0069|consen 70 TGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWG 149 (336) T ss_pred chHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCcc Confidence 34567788877669999999999999999999999999999999999999999999999999999999999999999994 Q ss_pred cccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc-hh-hhhcCCcccChHhhhccCCEEEEec Q psy13054 941 LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-EE-GTALGAQLVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 941 ~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~-~~-~~~~g~~~~~l~ell~~sDvV~l~l 1018 (1128) . . ...+....+.||||||+|+|+||+.+|++|++|||. +.|+.+... .+ ..+.+.+.+++++++++||+||+|| T Consensus 150 ~--~-~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~-i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~ 225 (336) T KOG0069|consen 150 W--A-GGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCV-ILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNC 225 (336) T ss_pred c--c-CCccccccccCCEEEEecCcHHHHHHHHhhhhccce-eeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEec Confidence 1 1 111234489999999999999999999999999965 566666544 33 5556777889999999999999999 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCC Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag 1098 (1128) |+|++|+|+||+++|++||+|+++||+|||+++|++++++||++|+|++|+||||++|| +.++||++++||++|||+|+ T Consensus 226 pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs 304 (336) T KOG0069|consen 226 PLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGS 304 (336) T ss_pred CCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEeccccc Confidence 99999999999999999999999999999999999999999999999999999999999 88999999999999999999 Q ss_pred CcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1099 ATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1099 ~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) .|.+++++|+..++.|+.++++|+|+..+| T Consensus 305 ~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336) T KOG0069|consen 305 ATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336) T ss_pred CcHHHHHHHHHHHHHHHHHHHccCCCCCcC Confidence 999999999999999999999999987764 |
|
>PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
---|
Probab=100.00 E-value=3.7e-52 Score=475.54 Aligned_cols=296 Identities=28% Similarity=0.465 Sum_probs=237.1 Q ss_pred hhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHh Q psy13054 45 PESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKS 124 (1128) Q Consensus 45 ~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~e 124 (1128) ++.++.++ ..+++..++. ....+.+++.+.++++|+++++..+++++++++++ |+||+|+++|+|+||||+++|++ T Consensus 13 ~~~~~~l~--~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~ 88 (333) T PRK13243 13 ENGIEMLE--EHFEVEVWED-EREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDNIDVEEATR 88 (333) T ss_pred HHHHHHHh--cCceEEEecC-CCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccccCHHHHHH Confidence 34445554 3356655532 12346788999999999999876568999999986 89999999999999999999999 Q ss_pred CCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccccc Q psy13054 125 RGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQK 204 (1128) Q Consensus 125 rGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 204 (1128) +||.|+|+||+++++||||++++||+++|+++.+++.++++ .| ......+. .....|. T Consensus 89 ~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-~W------------~~~~~~~~---------~~~~~g~ 146 (333) T PRK13243 89 RGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSG-EW------------KRRGVAWH---------PLMFLGY 146 (333) T ss_pred cCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcC-CC------------Cccccccc---------ccccccc Confidence 99999999999999999999999999999999988877653 33 21000000 0001123 Q ss_pred ccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccccc Q psy13054 205 YSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRM 284 (1128) Q Consensus 205 ~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~ 284 (1128) ++.||++||||+|. ||+.+++++++|++. T Consensus 147 ~L~gktvgIiG~G~---------------------------------IG~~vA~~l~~~G~~------------------ 175 (333) T PRK13243 147 DVYGKTIGIIGFGR---------------------------------IGQAVARRAKGFGMR------------------ 175 (333) T ss_pred CCCCCEEEEECcCH---------------------------------HHHHHHHHHHHCCCE------------------ Confidence 45678999999973 678888888877653 Q ss_pred CCccccceeeccccccccc-ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCH Q psy13054 285 GSKTDTNHYFGYNWFERSN-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363 (1128) Q Consensus 285 g~~~~~~~~~g~~~~~~~~-~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe 363 (1128) +++|+++.+.. ....++++.+++|++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++||| T Consensus 176 --------V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~ 247 (333) T PRK13243 176 --------ILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDT 247 (333) T ss_pred --------EEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCH Confidence 23344332221 224466778999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 364 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 364 ~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) +||++||++|+|+||+||||++||++ ++|||++||| ++|||+++.|.+ ...++|+.+|+.+. T Consensus 248 ~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~ 315 (333) T PRK13243 248 KALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNV------VLAPHIGSATFEAREGMAELVAENLIAFKRGE 315 (333) T ss_pred HHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCE------EECCcCCcCHHHHHHHHHHHHHHHHHHHHcCC Confidence 99999999999999999999999987 8999999999 999999999875 33467777776654 |
|
>PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
---|
Probab=100.00 E-value=8.2e-52 Score=478.35 Aligned_cols=301 Identities=20% Similarity=0.273 Sum_probs=228.6 Q ss_pred CceEEEcCCCCCCCCHHHHHHhc-CCceEEEeCCCCCCCHHHHhccCC-CceEEEEcCcccccccHHHHHhCCcEEEecC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKL-KGCSALLCNPHQKVDKEVLDRSGE-NLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l-~~adaIi~~~~~~i~~evL~~~~~-~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128) .+++..+...+...+.+++.+.+ .++|+++++..++++++++++++. +||+|+++|+|+||||+++|+++||.|+|+| T Consensus 37 ~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~p 116 (386) T PLN02306 37 DCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTP 116 (386) T ss_pred CceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCCCEEEECC Confidence 36776544222235778898988 579999987667899999998732 4799999999999999999999999999999 Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128) Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128) |+++++||||++++||+++|++..+++.++++ .| ..|... ...|..+.|||+|| T Consensus 117 g~~~~~VAE~al~liLal~R~i~~~~~~~~~g-~w---------~~~~~~----------------~~~g~~L~gktvGI 170 (386) T PLN02306 117 GVLTETTAELAASLSLAAARRIVEADEFMRAG-LY---------EGWLPH----------------LFVGNLLKGQTVGV 170 (386) T ss_pred CcCHHHHHHHHHHHHHHHHhChHHHHHHHHcC-CC---------cccccc----------------ccCCcCCCCCEEEE Confidence 99999999999999999999999988877653 23 112110 01123456789999 Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhcc-CCceeeeeeCCCCCCCC-ccccccCCccccc Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLK-GSDIFEFFLGPKKNGSQ-NPKWRMGSKTDTN 291 (1128) Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~-g~~~~~~ilG~g~iG~~-va~~~~g~~~~~~ 291 (1128) +|+|+ ||+++++++. +|+|.+..+++ .... .... . T Consensus 171 iG~G~---------------------------------IG~~vA~~l~~~fGm~V~~~d~--~~~~~~~~~--------~ 207 (386) T PLN02306 171 IGAGR---------------------------------IGSAYARMMVEGFKMNLIYYDL--YQSTRLEKF--------V 207 (386) T ss_pred ECCCH---------------------------------HHHHHHHHHHhcCCCEEEEECC--CCchhhhhh--------h Confidence 99973 6888888874 77664322221 1100 0000 0 Q ss_pred eeecccccccccccccCCcc-cCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHH Q psy13054 292 HYFGYNWFERSNGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL 370 (1128) Q Consensus 292 ~~~g~~~~~~~~~~~~g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL 370 (1128) ..++.+... ......++++ .+|+|+|++|||||+|||+|++|+||||++.|++||+|++|||+|||++|||+||++|| T Consensus 208 ~~~~~~l~~-~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL 286 (386) T PLN02306 208 TAYGQFLKA-NGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHL 286 (386) T ss_pred hhhcccccc-cccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHH Confidence 000000000 0000112233 49999999999999999999999999999999999999999999999999999999999 Q ss_pred HcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH Q psy13054 371 KDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128) Q Consensus 371 ~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128) ++|+|+|||||||++||++ ++|||++||| ++|||++++|.+ ...++|+.+|+++.. T Consensus 287 ~sg~i~gAaLDVf~~EP~~-~~~L~~~pNV------ilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~~ 348 (386) T PLN02306 287 KANPMFRVGLDVFEDEPYM-KPGLADMKNA------VVVPHIASASKWTREGMATLAALNVLGKLKGYP 348 (386) T ss_pred HhCCeeEEEEeCCCCCCCC-cchHhhCCCE------EECCccccCcHHHHHHHHHHHHHHHHHHHcCCC Confidence 9999999999999999964 6799999999 999999999874 345677777776543 |
|
>PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=4.6e-52 Score=478.88 Aligned_cols=281 Identities=20% Similarity=0.279 Sum_probs=231.4 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCC--CCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPH--QKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~--~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128) .++++.+++. ..+.+++.+.++++|++|+... .++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+| T Consensus 75 g~~~v~~~~~--~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~ 151 (386) T PLN03139 75 GHQYIVTDDK--EGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAGLTVAEVT 151 (386) T ss_pred CCeEEEeCCC--CCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCCeEEEECC Confidence 3677666532 3467889999999999998542 46999999986 89999999999999999999999999999999 Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128) Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128) |+|+++||||++++||++.|++..++++++++ .|..... ...+..+.||++|| T Consensus 152 g~na~sVAE~al~liL~l~R~~~~~~~~~~~g-------------~W~~~~~--------------~~~~~~L~gktVGI 204 (386) T PLN03139 152 GSNVVSVAEDELMRILILLRNFLPGYHQVVSG-------------EWNVAGI--------------AYRAYDLEGKTVGT 204 (386) T ss_pred CcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhC-------------CCccccc--------------cCCCcCCCCCEEEE Confidence 99999999999999999999999988877653 2321000 00123356789999 Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128) Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128) +|+|. ||+.+++++++|++. + T Consensus 205 VG~G~---------------------------------IG~~vA~~L~afG~~--------------------------V 225 (386) T PLN03139 205 VGAGR---------------------------------IGRLLLQRLKPFNCN--------------------------L 225 (386) T ss_pred EeecH---------------------------------HHHHHHHHHHHCCCE--------------------------E Confidence 99873 678888888877653 2 Q ss_pred ecccccc--cccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHH Q psy13054 294 FGYNWFE--RSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL 370 (1128) Q Consensus 294 ~g~~~~~--~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL 370 (1128) ++|+++. .+...+.+++++ +|+|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++|||+||++|| T Consensus 226 ~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL 305 (386) T PLN03139 226 LYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADAC 305 (386) T ss_pred EEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHH Confidence 3344332 112234566665 9999999999999999999999999999999999999999999999999999999999 Q ss_pred HcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHHH Q psy13054 371 KDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEE 431 (1128) Q Consensus 371 ~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~ 431 (1128) ++|+|+||+||||++||+|.+||||++||| ++|||+++.|.+. .+.+|+..|+.+ T Consensus 306 ~sG~l~GAaLDV~~~EPlp~d~pL~~~pNv------ilTPHiag~t~~~~~r~~~~~~~nl~~~~~G 366 (386) T PLN03139 306 SSGHIGGYGGDVWYPQPAPKDHPWRYMPNH------AMTPHISGTTIDAQLRYAAGVKDMLDRYFKG 366 (386) T ss_pred HcCCceEEEEcCCCCCCCCCCChhhcCCCe------EEcccccccCHHHHHHHHHHHHHHHHHHHcC Confidence 999999999999999999999999999999 9999999998753 245666666553 |
|
>PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=6.4e-51 Score=458.18 Aligned_cols=240 Identities=25% Similarity=0.389 Sum_probs=218.9 Q ss_pred CCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccc Q psy13054 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG 953 (1128) Q Consensus 874 ~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~ 953 (1128) ++||||++.++|+|++|+++|+++||.++|. |.++.+||||+++++|++.|++.++++.+++|.|.. ....+ T Consensus 48 ~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~-------~~~~~ 119 (303) T PRK06436 48 KKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQ-------SPTKL 119 (303) T ss_pred CCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCC-------CCCCC Confidence 8999999999999999999999998888775 889999999999999999999999999999999972 12358 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) |+||||||||+|+||+++|+++++|||+|++||++...... .....++++++++||+|++|||+|++|+++|+++.| T Consensus 120 L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~---~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l 196 (303) T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGI---SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML 196 (303) T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCc---ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHH Confidence 99999999999999999999999999999999976432211 112468999999999999999999999999999999 Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCC-CCcHHHHHHHHHHHH Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTS-SATKAVRDEKSSTSA 1112 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHia-g~t~e~~~~~~~~~~ 1112 (1128) ++||+|++|||+|||++||++||+++|++|++.||+||||++||+|.++ .+|||++|||++ +.|.++++++.+.++ T Consensus 197 ~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~ 273 (303) T PRK06436 197 SLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAF 273 (303) T ss_pred hcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHH Confidence 9999999999999999999999999999999999999999999998776 689999999976 589999999999999 Q ss_pred HHHHHHHcCCCCCCCC Q psy13054 1113 ENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1113 ~nl~~~l~G~~l~~~v 1128 (1128) +||.+|++|++ .|.| T Consensus 274 ~ni~~~~~g~~-~~~V 288 (303) T PRK06436 274 ENIKNFFEGKP-KNIV 288 (303) T ss_pred HHHHHHHcCCC-CceE Confidence 99999999987 5654 |
|
>PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=2.5e-51 Score=473.13 Aligned_cols=284 Identities=23% Similarity=0.300 Sum_probs=232.8 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCC--CCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~--~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128) .+++..+.+ ...+.+++.+.++++|++|+.. ..++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+| T Consensus 68 g~e~~~~~~--~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~ 144 (385) T PRK07574 68 GHELVVTSD--KDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITVAEVT 144 (385) T ss_pred CcEEEEeCC--CCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEEEcCC Confidence 367766543 2346788999999999999853 357999999986 89999999999999999999999999999999 Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128) Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128) ++++++||||++++||+++|++..++++++++ .|..... ...+..+.||++|| T Consensus 145 g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g-------------~W~~~~~--------------~~~~~~L~gktVGI 197 (385) T PRK07574 145 GSNSISVAEHVVMMILALVRNYEPSHRQAVEG-------------GWNIADC--------------VSRSYDLEGMTVGI 197 (385) T ss_pred CCchHHHHHHHHHHHHHHHcCHHHHHHHHHhC-------------CCCcccc--------------cccceecCCCEEEE Confidence 99999999999999999999999988876653 2321000 00112355788999 Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128) Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128) +|+|+ ||+.+++++++|++. + T Consensus 198 vG~G~---------------------------------IG~~vA~~l~~fG~~--------------------------V 218 (385) T PRK07574 198 VGAGR---------------------------------IGLAVLRRLKPFDVK--------------------------L 218 (385) T ss_pred ECCCH---------------------------------HHHHHHHHHHhCCCE--------------------------E Confidence 98873 678888888887654 2 Q ss_pred eccccccc--ccccccCCc-ccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHH Q psy13054 294 FGYNWFER--SNGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL 370 (1128) Q Consensus 294 ~g~~~~~~--~~~~~~g~~-~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL 370 (1128) ++|+++.. +.....+++ +.+++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++||++||++|| T Consensus 219 ~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL 298 (385) T PRK07574 219 HYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRAL 298 (385) T ss_pred EEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHH Confidence 34443321 112344565 469999999999999999999999999999999999999999999999999999999999 Q ss_pred HcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHHHHHH Q psy13054 371 KDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEELFD 434 (1128) Q Consensus 371 ~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~~~~ 434 (1128) ++|+|+|||||||++||+|.+||||++||| ++|||+++.|.+. .+.+|+..|+++... T Consensus 299 ~sG~i~GAaLDV~~~EPlp~d~pL~~~pNv------ilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~ 362 (385) T PRK07574 299 ESGHLAGYAGDVWFPQPAPADHPWRTMPRN------GMTPHISGTTLSAQARYAAGTREILECFFEGRPI 362 (385) T ss_pred HhCCccEEEEecCCCCCCCCCChHHhCCCe------EECCccccCcHHHHHHHHHHHHHHHHHHHcCCCC Confidence 999999999999999999999999999999 9999999998753 345777777665433 |
|
>PLN02928 oxidoreductase family protein | Back alignment and domain information |
---|
Probab=100.00 E-value=2e-50 Score=463.08 Aligned_cols=279 Identities=19% Similarity=0.316 Sum_probs=222.8 Q ss_pred CHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCC---CchhHHHHHHH Q psy13054 70 PRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPV---SSDTVAEYNIG 146 (1128) Q Consensus 70 ~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~---~~~aVAE~ala 146 (1128) +.+++.+.++++|+++++ ..++++++|+.+ |+||+|+++|+|+||||+++|.++||.|+|+|++ ++.+||||+++ T Consensus 51 ~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~ 128 (347) T PLN02928 51 AREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIY 128 (347) T ss_pred CHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHH Confidence 567889999999998875 468999999985 8999999999999999999999999999999986 78999999999 Q ss_pred HHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCC Q psy13054 147 LAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQN 226 (1128) Q Consensus 147 lmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~ 226 (1128) +||+++|++...++.++++ .|... .+..+.||++||+|+|. T Consensus 129 l~L~~~R~~~~~~~~~~~~-------------~w~~~------------------~~~~l~gktvGIiG~G~-------- 169 (347) T PLN02928 129 LMLGLLRKQNEMQISLKAR-------------RLGEP------------------IGDTLFGKTVFILGYGA-------- 169 (347) T ss_pred HHHHHHhCHHHHHHHHHcC-------------Ccccc------------------cccCCCCCEEEEECCCH-------- Confidence 9999999999887766542 23210 11235678999999973 Q ss_pred cccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccc-ccccc Q psy13054 227 PKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFE-RSNGT 305 (1128) Q Consensus 227 ~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~-~~~~~ 305 (1128) ||+++++++++|++.+. ++.+..+.... ..+++.... ..... T Consensus 170 -------------------------IG~~vA~~l~afG~~V~--~~dr~~~~~~~----------~~~~~~~~~~~~~~~ 212 (347) T PLN02928 170 -------------------------IGIELAKRLRPFGVKLL--ATRRSWTSEPE----------DGLLIPNGDVDDLVD 212 (347) T ss_pred -------------------------HHHHHHHHHhhCCCEEE--EECCCCChhhh----------hhhcccccccccccc Confidence 68889999998877532 22211110000 000000000 00000 Q ss_pred ccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCC Q psy13054 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 385 (1128) Q Consensus 306 ~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~ 385 (1128) . ...+.+|+|++++||||++|||+|++|+||||++.|++||||++|||+|||++|||+||++||++|+|+||+||||++ T Consensus 213 ~-~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~ 291 (347) T PLN02928 213 E-KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWS 291 (347) T ss_pred c-cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCC Confidence 1 125679999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH Q psy13054 386 EPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128) Q Consensus 386 EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128) ||+++++|||++||| ++|||++++|.+ ....+|+.+|+++.. T Consensus 292 EP~~~~~pL~~~~nv------iiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~ 339 (347) T PLN02928 292 EPFDPDDPILKHPNV------IITPHVAGVTEYSYRSMGKIVGDAALQLHAGRP 339 (347) T ss_pred CCCCCCChhhcCCCE------EECCcCCCChHHHHHHHHHHHHHHHHHHHCCCC Confidence 999999999999999 999999999875 334677777766543 |
|
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
---|
Probab=100.00 E-value=5.2e-50 Score=482.87 Aligned_cols=288 Identities=27% Similarity=0.404 Sum_probs=235.7 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128) +.++.++.++. ..+++...+ ..+.+++.+.++++|++++++.+++++++|+++ |+||+|+++|+|+||||+++| T Consensus 8 ~~~~~~~~l~~-~~~~~~~~~----~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~ 81 (525) T TIGR01327 8 ISPDGIDILED-VGVEVDVQT----GLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIEAA 81 (525) T ss_pred CCHHHHHHHHh-cCcEEEeCC----CCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHHHH Confidence 33455555531 235666543 235788999999999999887778999999986 899999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128) +++||.|+|+|++++.+||||++++||+++|+++.+++.++++ .|... .+. T Consensus 82 ~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-------------~W~~~----------------~~~ 132 (525) T TIGR01327 82 TARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEG-------------EWDRK----------------AFM 132 (525) T ss_pred HHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcC-------------Ccccc----------------ccC Confidence 9999999999999999999999999999999999988876653 33210 011 Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128) Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128) |..+.||++||+|+|. ||+.+++++++|++. T Consensus 133 g~~l~gktvgIiG~G~---------------------------------IG~~vA~~l~~fG~~---------------- 163 (525) T TIGR01327 133 GTELYGKTLGVIGLGR---------------------------------IGSIVAKRAKAFGMK---------------- 163 (525) T ss_pred ccccCCCEEEEECCCH---------------------------------HHHHHHHHHHhCCCE---------------- Confidence 2345678999999973 678889988887653 Q ss_pred ccCCccccceeecccccc-cccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc Q psy13054 283 RMGSKTDTNHYFGYNWFE-RSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128) Q Consensus 283 ~~g~~~~~~~~~g~~~~~-~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128) +++|+++. ++...+++++++ +|+|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++ T Consensus 164 ----------V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~ 233 (525) T TIGR01327 164 ----------VLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGI 233 (525) T ss_pred ----------EEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCce Confidence 34445432 222344567766 899999999999999999999999999999999999999999999999 Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHHH Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEE 431 (1128) Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~ 431 (1128) |||+||++||++|+|+|||||||++||+ .++|||++||| ++|||++++|.+. ..++|+.+|+++ T Consensus 234 vde~aL~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nv------i~TPHia~~t~e~~~~~~~~~~~ni~~~~~g 303 (525) T TIGR01327 234 IDEAALYEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNV------IATPHLGASTREAQENVATQVAEQVLDALKG 303 (525) T ss_pred eCHHHHHHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCe------EECCCccccHHHHHHHHHHHHHHHHHHHHcC Confidence 9999999999999999999999999994 58999999999 9999999998752 334566665554 |
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=2.4e-49 Score=454.77 Aligned_cols=242 Identities=26% Similarity=0.343 Sum_probs=216.0 Q ss_pred hhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHH Q psy13054 851 LKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQE 929 (1128) Q Consensus 851 l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~ 929 (1128) +++++++.+. .+++++++++ . ++||||+++++|+||||+++++++||.|+|+||+|+.+||||+++++|++.|+. T Consensus 35 l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-- 110 (378) T PRK15438 35 LADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-- 110 (378) T ss_pred hCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-- Confidence 4555544433 3678999986 4 899999999999999999999999999999999999999999999999999851 Q ss_pred HHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhc Q psy13054 930 GRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCA 1009 (1128) Q Consensus 930 ~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~ 1009 (1128) .| ++.||||||||+|+||+++|++|++|||+|++||+..... .....+++|+++++ T Consensus 111 --------g~-------------~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~ 166 (378) T PRK15438 111 --------GF-------------SLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---GDEGDFRSLDELVQ 166 (378) T ss_pred --------CC-------------CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---ccccccCCHHHHHh Confidence 12 4899999999999999999999999999999998643321 11234679999999 Q ss_pred cCCEEEEecCCCcc----cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccc Q psy13054 1010 ESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLV 1085 (1128) Q Consensus 1010 ~sDvV~l~lPlt~~----T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~ 1085 (1128) +||||++|+|+|++ |+||||++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||. .++||| T Consensus 167 ~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll 245 (378) T PRK15438 167 EADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELL 245 (378) T ss_pred hCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-Cchhhh Confidence 99999999999996 9999999999999999999999999999999999999999999999999999996 467898 Q ss_pred cCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC Q psy13054 1086 QLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1086 ~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) ..+| ++|||+||+|.+...++..++.+|+.+|+ |.+ T Consensus 246 ~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~ 281 (378) T PRK15438 246 KKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE 281 (378) T ss_pred hcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc Confidence 8766 99999999999999999999999999998 444 |
|
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=1.5e-49 Score=478.93 Aligned_cols=289 Identities=30% Similarity=0.428 Sum_probs=236.2 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128) +.++.++.++....+++...+. .+.+++.+.++++|++++++.+++++++++++ |+||+|+++|+|+||||+++| T Consensus 9 ~~~~~~~~l~~~~~~~v~~~~~----~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~ 83 (526) T PRK13581 9 ISPAGLEILKDAPGVEVDVKTG----LDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVDVPAA 83 (526) T ss_pred CCHHHHHHHhccCCeEEEeCCC----CCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCcccccccHHHH Confidence 3345555554211356654332 35788999999999999877678999999986 899999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128) +++||.|+|+|++++.+||||++++||+++|+++.+++.++++ .|... .+. T Consensus 84 ~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g-------------~W~~~----------------~~~ 134 (526) T PRK13581 84 TRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAG-------------KWERK----------------KFM 134 (526) T ss_pred HHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcC-------------CCCcc----------------Ccc Confidence 9999999999999999999999999999999999988766543 33210 011 Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128) Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128) +..+.+|++||+|+|. ||+.+++++++|++. T Consensus 135 g~~l~gktvgIiG~G~---------------------------------IG~~vA~~l~~fG~~---------------- 165 (526) T PRK13581 135 GVELYGKTLGIIGLGR---------------------------------IGSEVAKRAKAFGMK---------------- 165 (526) T ss_pred ccccCCCEEEEECCCH---------------------------------HHHHHHHHHHhCCCE---------------- Confidence 2335678999999973 678888888877653 Q ss_pred ccCCccccceeeccccccc-ccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCcc Q psy13054 283 RMGSKTDTNHYFGYNWFER-SNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 361 (1128) Q Consensus 283 ~~g~~~~~~~~~g~~~~~~-~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lV 361 (1128) +++|+++.. +.....++++++++|++++||+|++|||+|++|+||||++.|++||+|++|||+|||++| T Consensus 166 ----------V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~v 235 (526) T PRK13581 166 ----------VIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGII 235 (526) T ss_pred ----------EEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCcee Confidence 344554322 223456778889999999999999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHHH Q psy13054 362 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEE 431 (1128) Q Consensus 362 De~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~ 431 (1128) ||+||++||++|+|+|||||||++||++ +||||++||| ++|||++++|.+. ..++|+.+|+++ T Consensus 236 de~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~g 304 (526) T PRK13581 236 DEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNV------VVTPHLGASTAEAQENVAIQVAEQVIDALRG 304 (526) T ss_pred CHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCe------eEcCccccchHHHHHHHHHHHHHHHHHHHcC Confidence 9999999999999999999999999976 9999999999 9999999998752 345666665554 |
|
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=7.3e-49 Score=452.19 Aligned_cols=244 Identities=24% Similarity=0.343 Sum_probs=218.5 Q ss_pred HhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccH Q psy13054 850 LLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 928 (1128) Q Consensus 850 ~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~ 928 (1128) .+++++++.+. .+++++++++ . ++||||+++++|+||+|+++++++||.|+|+||+|+.+||||+++++|++.|+ T Consensus 34 ~l~daD~liv~~~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-- 109 (381) T PRK00257 34 AVRDADVLLVRSVTRVDRALLE-G-SRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-- 109 (381) T ss_pred HhCCceEEEEeCCCCCCHHHhc-C-CCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-- Confidence 34455544333 3679999997 3 89999999999999999999999999999999999999999999999999874 Q ss_pred HHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhh Q psy13054 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLC 1008 (1128) Q Consensus 929 ~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell 1008 (1128) +. .++.||||||||+|+||+++|+++++|||+|++||+..... +.+...++++|++ T Consensus 110 ----------~g-----------~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~---~~~~~~~~l~ell 165 (381) T PRK00257 110 ----------EG-----------VDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA---EGDGDFVSLERIL 165 (381) T ss_pred ----------cC-----------CCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc---ccCccccCHHHHH Confidence 11 25899999999999999999999999999999998754321 1234567999999 Q ss_pred ccCCEEEEecCCCc----ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCcc Q psy13054 1009 AESDFIFVTCALTK----DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPL 1084 (1128) Q Consensus 1009 ~~sDvV~l~lPlt~----~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL 1084 (1128) ++||+|++|+|+|+ +|+||||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||. .++|| T Consensus 166 ~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L 244 (381) T PRK00257 166 EECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLEL 244 (381) T ss_pred hhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhh Confidence 99999999999999 59999999999999999999999999999999999999999999999999999996 47899 Q ss_pred ccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC Q psy13054 1085 VQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1085 ~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) |.. |+++|||+||+|.+...++.+++++|+.+|+.+.+ T Consensus 245 ~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~ 282 (381) T PRK00257 245 ADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPA 282 (381) T ss_pred hhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCC Confidence 985 99999999999999999999999999999998765 |
|
>KOG0069|consensus | Back alignment and domain information |
---|
Probab=100.00 E-value=6.7e-49 Score=438.62 Aligned_cols=273 Identities=34% Similarity=0.513 Sum_probs=226.9 Q ss_pred CCHHHHHHhcCCceEEEeCC-CCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHH Q psy13054 69 MPRDIFIEKLKGCSALLCNP-HQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGL 147 (1128) Q Consensus 69 ~~~eel~~~l~~adaIi~~~-~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alal 147 (1128) .+.+++.+.+.++..++... ....+.+.+.+++|+||+|+++|+|+||||+++|++|||+|+|+|+.++++|||+++++ T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~l 128 (336) T KOG0069|consen 49 LIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSL 128 (336) T ss_pred cchhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHH Confidence 45566777777766555443 44688999998889999999999999999999999999999999999999999999999 Q ss_pred HHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCc Q psy13054 148 AIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNP 227 (1128) Q Consensus 148 mL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~ 227 (1128) +|.++||+..++++++.+ .| .|. +....|....+|++||+|+|. T Consensus 129 il~~~R~~~~g~~~~~~g-~w----------~~~----------------~~~~~g~~~~gK~vgilG~G~--------- 172 (336) T KOG0069|consen 129 LLALLRRFSEGNEMVRNG-GW----------GWA----------------GGWPLGYDLEGKTVGILGLGR--------- 172 (336) T ss_pred HHHHHhhhhhhhhhhhcC-Cc----------ccc----------------CCccccccccCCEEEEecCcH--------- Confidence 999999999999877654 22 011 111234456678999998862 Q ss_pred ccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccccccc Q psy13054 228 KWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTAL 307 (1128) Q Consensus 228 ~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~ 307 (1128) ||+.+++++.+|++. +.|..+..-..+.+.++ T Consensus 173 ------------------------IG~~ia~rL~~Fg~~------------------------i~y~~r~~~~~~~~~~~ 204 (336) T KOG0069|consen 173 ------------------------IGKAIAKRLKPFGCV------------------------ILYHSRTQLPPEEAYEY 204 (336) T ss_pred ------------------------HHHHHHHhhhhccce------------------------eeeecccCCchhhHHHh Confidence 678888888877532 12222222223334556 Q ss_pred CCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCC Q psy13054 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 387 (1128) Q Consensus 308 g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EP 387 (1128) +.++++++|++++||+|++|||||++|+||||++.|++||+|++|||+|||+++||+||++||++|+|++||||||++|| T Consensus 205 ~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP 284 (336) T KOG0069|consen 205 YAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP 284 (336) T ss_pred cccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC Confidence 77788999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 388 LPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 388 l~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) +.++||++++|| +++||++++|.+ ..++.|+.+||.+. T Consensus 285 -~~~~~l~~~dnv------v~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~ 328 (336) T KOG0069|consen 285 -PVDHPLLTLDNV------VILPHIGSATLETREKMAEIVLNNLLAFFSGK 328 (336) T ss_pred -CCCcchhcccce------eEecccccCcHHHHHHHHHHHHHHHHHHHccC Confidence 999999999999 999999999984 56678888888765 |
|
>PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=8.6e-49 Score=446.80 Aligned_cols=294 Identities=19% Similarity=0.277 Sum_probs=230.1 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccC-CCceEEEEcCcccccccHHHHHhCCcEEEecCC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSG-ENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGP 134 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~-~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg 134 (1128) .+++...+. ..+. ++.+.++++|+++++..++++++++++++ ++||+|+++|+|+||||+++|+++||.|+|+|+ T Consensus 25 ~~~~~~~~~---~~~~-~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~ 100 (330) T PRK12480 25 NVEVTTSKE---LLSS-ATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPS 100 (330) T ss_pred CeEEEEcCC---CCCH-HHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCC Confidence 355555432 2444 45899999999998766789999999973 389999999999999999999999999999999 Q ss_pred CCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeee Q psy13054 135 VSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLI 214 (1128) Q Consensus 135 ~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gii 214 (1128) +++++||||++++||++.|+++.+++.++++ .| .|.. ...+..+.|+++||| T Consensus 101 ~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~-~~----------~w~~-----------------~~~~~~l~g~~VgII 152 (330) T PRK12480 101 YSPETIAEYSVSIALQLVRRFPDIERRVQAH-DF----------TWQA-----------------EIMSKPVKNMTVAII 152 (330) T ss_pred CChHHHHHHHHHHHHHHHHhHHHHHHHHHhC-Cc----------cccc-----------------ccCccccCCCEEEEE Confidence 9999999999999999999999988766553 11 1210 011223556788999 Q ss_pred eccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceee Q psy13054 215 SLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYF 294 (1128) Q Consensus 215 Glg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~ 294 (1128) |+|. +|+.+++++.++++. ++ T Consensus 153 G~G~---------------------------------IG~~vA~~L~~~G~~--------------------------V~ 173 (330) T PRK12480 153 GTGR---------------------------------IGAATAKIYAGFGAT--------------------------IT 173 (330) T ss_pred CCCH---------------------------------HHHHHHHHHHhCCCE--------------------------EE Confidence 8873 577788887766543 33 Q ss_pred cccccccccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcC Q psy13054 295 GYNWFERSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 (1128) Q Consensus 295 g~~~~~~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG 373 (1128) +|++....... ..++. ++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++| T Consensus 174 ~~d~~~~~~~~--~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330) T PRK12480 174 AYDAYPNKDLD--FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330) T ss_pred EEeCChhHhhh--hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC Confidence 34432211111 12333 8999999999999999999999999999999999999999999999999999999999999 Q ss_pred CeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhhhHHHHHHHHHHHHHHhhhccCCCCCCCCCCCcee Q psy13054 374 KIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPLVQLDNCEEFFEELFDKNFQSIDPPGAEPGSGQNL 453 (1128) Q Consensus 374 ~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~nv 453 (1128) +|+|||||||++||++... +....... ++...++.++||| T Consensus 252 ~i~gaalDV~~~EP~~~~~--------------------------------------~~~~~~~~--~~~~~~L~~~~nv 291 (330) T PRK12480 252 TLLGAAIDTYENEAAYFTN--------------------------------------DWTNKDID--DKTLLELIEHERI 291 (330) T ss_pred CeeEEEEeccCCCCccccc--------------------------------------cccccccC--chhhHHHhcCCCE Confidence 9999999999999942110 00000000 1222346778999 Q ss_pred EEeccccccccCccchhhhcccccccccc Q psy13054 454 ATTSKSCILKDKTLPRISASHLLPFKKYS 482 (1128) Q Consensus 454 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1128) ++|||.|++|++++.++...+++|+.+|. T Consensus 292 ilTPHia~~t~~~~~~~~~~~~~n~~~~~ 320 (330) T PRK12480 292 LVTPHIAFFSDEAVQNLVEGGLNAALSVI 320 (330) T ss_pred EECCcccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999998875 |
|
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=2.5e-46 Score=429.76 Aligned_cols=251 Identities=22% Similarity=0.274 Sum_probs=209.0 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPV 135 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~ 135 (1128) .++|.+.+. ...+. +.++++|++++++.+++++++++ . ++||+|+++++|+||||+++|+++||.|+|+||+ T Consensus 19 ~~ev~~~~~--~~~~~----~~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~ 90 (378) T PRK15438 19 LGEVKAVPG--RPIPV----AQLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGC 90 (378) T ss_pred cCcEEEeCC--CCCCH----HHhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccCHHHHHHCCCEEEECCCc Confidence 357777653 22343 34689999999887899999997 3 7999999999999999999999999999999999 Q ss_pred CchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeee Q psy13054 136 SSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLIS 215 (1128) Q Consensus 136 ~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiG 215 (1128) |+.+||||++++||++.|+.. ..+.+||+|||| T Consensus 91 na~aVAE~~~~~lL~l~r~~g-----------------------------------------------~~L~gktvGIIG 123 (378) T PRK15438 91 NAIAVVEYVFSSLLMLAERDG-----------------------------------------------FSLHDRTVGIVG 123 (378) T ss_pred CchHHHHHHHHHHHHHhccCC-----------------------------------------------CCcCCCEEEEEC Confidence 999999999999999988521 013468999999 Q ss_pred ccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeec Q psy13054 216 LKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFG 295 (1128) Q Consensus 216 lg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g 295 (1128) +|+ ||+++++++++|++. +++ T Consensus 124 ~G~---------------------------------IG~~vA~~l~a~G~~--------------------------V~~ 144 (378) T PRK15438 124 VGN---------------------------------VGRRLQARLEALGIK--------------------------TLL 144 (378) T ss_pred cCH---------------------------------HHHHHHHHHHHCCCE--------------------------EEE Confidence 974 688899998887653 344 Q ss_pred ccccccccccccCCcccCHHHHhhcCCEEEEecCCCcc----cccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHH Q psy13054 296 YNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLK 371 (1128) Q Consensus 296 ~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~----T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~ 371 (1128) ||+...+. .....+++|+|++++|||||+|+|||++ |+||||++.|++||+|++|||+|||++|||+||++||+ T Consensus 145 ~dp~~~~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378) T PRK15438 145 CDPPRADR--GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLN 222 (378) T ss_pred ECCccccc--ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHH Confidence 44322111 1123567999999999999999999996 99999999999999999999999999999999999999 Q ss_pred cCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHH Q psy13054 372 DKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFE 430 (1128) Q Consensus 372 sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~ 430 (1128) +|++.||+||||++||. .++||+..++ ++|||++++|.+ .+.++|+.+|+. T Consensus 223 ~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-------i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378) T PRK15438 223 EGQKLSVVLDVWEGEPE-LNVELLKKVD-------IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378) T ss_pred hCCCcEEEEecCCCCCC-CchhhhhcCC-------EECCccCcCcHHHHHHHHHHHHHHHHHHHc Confidence 99999999999999995 5778877654 689999999885 445688888764 |
|
>PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=5.6e-46 Score=424.75 Aligned_cols=267 Identities=21% Similarity=0.315 Sum_probs=218.3 Q ss_pred HHHHHHhcCCceEEEeCCCCCCCHHHHhccCCC--ceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHH Q psy13054 71 RDIFIEKLKGCSALLCNPHQKVDKEVLDRSGEN--LKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLA 148 (1128) Q Consensus 71 ~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~--LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalm 148 (1128) .+|+++.++++|+++++..+++++++|+++ |+ ||+|+++|+|+||||+++|+++||.|+|+|++++++||||++++| T Consensus 36 ~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~ 114 (332) T PRK08605 36 TDDNVEEVEGFDGLSLSQQIPLSEAIYKLL-NELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQA 114 (332) T ss_pred CHHHHHHhcCCCEEEEecCCCCCHHHHHhh-hhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHH Confidence 356678999999999887789999999987 55 999999999999999999999999999999999999999999999 Q ss_pred HHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcc Q psy13054 149 IAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPK 228 (1128) Q Consensus 149 L~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~ 228 (1128) |+++|++...++.++++ .| .|.. .+.+..+.|+++||||+|. T Consensus 115 l~~~R~~~~~~~~~~~~-~~----------~~~~-----------------~~~~~~l~g~~VgIIG~G~---------- 156 (332) T PRK08605 115 INLVRHFNQIQTKVREH-DF----------RWEP-----------------PILSRSIKDLKVAVIGTGR---------- 156 (332) T ss_pred HHHhcChHHHHHHHHhC-Cc----------cccc-----------------ccccceeCCCEEEEECCCH---------- Confidence 99999999988766543 12 1211 0112335678899999873 Q ss_pred cccCCccccccccccccccccchhhHhHhhhc-cCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccccccc Q psy13054 229 WRMGSKTDTNHYFKAFENSTGAFLSSEINNSL-KGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTAL 307 (1128) Q Consensus 229 w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l-~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~ 307 (1128) +|+.+++++ .++++. +.+|++...... .. T Consensus 157 -----------------------IG~~vA~~L~~~~g~~--------------------------V~~~d~~~~~~~-~~ 186 (332) T PRK08605 157 -----------------------IGLAVAKIFAKGYGSD--------------------------VVAYDPFPNAKA-AT 186 (332) T ss_pred -----------------------HHHHHHHHHHhcCCCE--------------------------EEEECCCccHhH-Hh Confidence 577788887 566543 233333221111 11 Q ss_pred CCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCC Q psy13054 308 GAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 386 (1128) Q Consensus 308 g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~E 386 (1128) .++++ ++++++++||+|++|+|+|++|++++|++.|++||+|++|||+|||.++|++||++||++|+|+||+||||++| T Consensus 187 ~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~E 266 (332) T PRK08605 187 YVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFE 266 (332) T ss_pred hccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCC Confidence 23444 89999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred C--CCCCC-----------CcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 387 P--LPADH-----------PLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 387 P--l~~~~-----------pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) | +|.+| |||++||| ++|||+++.|.+ ...++|+.+|+++. T Consensus 267 p~~~~~~~~~~~~~~~~~~~L~~~~nv------ilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~ 325 (332) T PRK08605 267 RPLFPSDQRGQTINDPLLESLINREDV------ILTPHIAFYTDAAVKNLIVDALDATLEVLQTG 325 (332) T ss_pred CCccccccccccccchhhHHHhcCCCE------EECCcccccHHHHHHHHHHHHHHHHHHHHcCC Confidence 8 46665 49999999 999999999874 34567777777654 |
|
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=100.00 E-value=1.2e-45 Score=425.56 Aligned_cols=259 Identities=22% Similarity=0.296 Sum_probs=214.6 Q ss_pred ceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCC Q psy13054 57 FDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVS 136 (1128) Q Consensus 57 ~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~ 136 (1128) .++...+. ...+ .+.++++|++++++.+++++++|+. ++||+|+++++|+||||+++|+++||.|+|+||+| T Consensus 20 ~~v~~~~~--~~~~----~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~n 91 (381) T PRK00257 20 GEIRRLPG--RAFD----RAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCN 91 (381) T ss_pred CcEEEcCC--cccC----HHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHHHHHHCCCEEEECCCcC Confidence 46666652 1122 3467999999998878999999983 79999999999999999999999999999999999 Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeec Q psy13054 137 SDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISL 216 (1128) Q Consensus 137 ~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGl 216 (1128) +.+||||++++||++.|+.. ..+.+||+||||+ T Consensus 92 a~aVAE~v~~~lL~l~r~~g-----------------------------------------------~~l~gktvGIIG~ 124 (381) T PRK00257 92 ARGVVDYVLGSLLTLAEREG-----------------------------------------------VDLAERTYGVVGA 124 (381) T ss_pred hHHHHHHHHHHHHHHhcccC-----------------------------------------------CCcCcCEEEEECC Confidence 99999999999999988511 0134689999999 Q ss_pred cccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecc Q psy13054 217 KDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGY 296 (1128) Q Consensus 217 g~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~ 296 (1128) |+ ||+.+++++.++++. +++| T Consensus 125 G~---------------------------------IG~~va~~l~a~G~~--------------------------V~~~ 145 (381) T PRK00257 125 GH---------------------------------VGGRLVRVLRGLGWK--------------------------VLVC 145 (381) T ss_pred CH---------------------------------HHHHHHHHHHHCCCE--------------------------EEEE Confidence 74 678888888877653 3344 Q ss_pred cccccccccccCCcccCHHHHhhcCCEEEEecCCCc----ccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHc Q psy13054 297 NWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTK----DTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372 (1128) Q Consensus 297 ~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~----~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128) |+.... ...+..+++|+|++++||+|++|+|||+ +|+||||++.|++||+|++|||+|||++||++||++||++ T Consensus 146 Dp~~~~--~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~ 223 (381) T PRK00257 146 DPPRQE--AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS 223 (381) T ss_pred CCcccc--cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh Confidence 432211 1123457799999999999999999999 5999999999999999999999999999999999999999 Q ss_pred CCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHHHhhhcc Q psy13054 373 KKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELFDKNFQS 439 (1128) Q Consensus 373 G~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~~~~~~~ 439 (1128) |+|+||+||||++||. .++||+.. |+ ++|||+++++.+ .+.++|+.+|+.......+.. T Consensus 224 g~i~~a~LDV~e~EP~-~~~~L~~~-nv------i~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~~~ 288 (381) T PRK00257 224 GEDLDAVLDVWEGEPQ-IDLELADL-CT------IATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSLTD 288 (381) T ss_pred CCCcEEEEeCCCCCCC-CChhhhhC-CE------EEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccchhc Confidence 9999999999999995 67899986 98 999999999885 456788888887665444443 |
|
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=8.1e-44 Score=402.81 Aligned_cols=253 Identities=17% Similarity=0.193 Sum_probs=200.0 Q ss_pred cCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH-----HHhCCcEEEecCC-CCchhHHHHHHHHHHHH Q psy13054 78 LKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE-----IKSRGIRVGTVGP-VSSDTVAEYNIGLAIAV 151 (1128) Q Consensus 78 l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a-----a~erGI~V~n~pg-~~~~aVAE~alalmL~l 151 (1128) .+++|+++++. .+.++++ . ++||+|++.|+|+||+|.+. +.++||.|+|+++ .++.+||||++++||++ T Consensus 36 ~~~a~~~~~~~---~~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312) T PRK15469 36 NDPADYALVWH---PPVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312) T ss_pred CccCeEEEEeC---CChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH Confidence 37899998864 2567786 3 79999999999999998332 3458999999974 68999999999999999 Q ss_pred hhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCccccc Q psy13054 152 SRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRM 231 (1128) Q Consensus 152 ~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~i 231 (1128) .|+++...+..++ +.|... .+..+.+||+||+|+|. T Consensus 111 ~r~~~~~~~~~~~-------------~~w~~~------------------~~~~l~g~tvgIvG~G~------------- 146 (312) T PRK15469 111 FRRFDDYQALQNS-------------SHWQPL------------------PEYHREDFTIGILGAGV------------- 146 (312) T ss_pred HcChHHHHHHHHh-------------CCcCCC------------------CCCCcCCCEEEEECCCH------------- Confidence 9999987664433 234210 01123468999999973 Q ss_pred CCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccc--ccccCC Q psy13054 232 GSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSN--GTALGA 309 (1128) Q Consensus 232 g~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~--~~~~g~ 309 (1128) ||+++++++++|++.+. +|+++.+.. .... . T Consensus 147 --------------------IG~~vA~~l~afG~~V~--------------------------~~~~~~~~~~~~~~~-~ 179 (312) T PRK15469 147 --------------------LGSKVAQSLQTWGFPLR--------------------------CWSRSRKSWPGVQSF-A 179 (312) T ss_pred --------------------HHHHHHHHHHHCCCEEE--------------------------EEeCCCCCCCCceee-c Confidence 68889999988776422 222211110 0111 1 Q ss_pred cccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCC Q psy13054 310 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 389 (1128) Q Consensus 310 ~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~ 389 (1128) ...+|++++++||||++|||+|++|+|+||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||+| T Consensus 180 ~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~ 259 (312) T PRK15469 180 GREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLP 259 (312) T ss_pred ccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCC Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCcccCCCCCCCCcccccccCCCCChhh----hHHHHHHHHHHHH Q psy13054 390 ADHPLVQLDNCGGAGLDVMIPEPLPADHPL----VQLDNCEEFFEEL 432 (1128) Q Consensus 390 ~~~pL~~lpNvg~~~~~v~tph~~~~t~~~----~~~~n~~~~~~~~ 432 (1128) .++|||++||| ++|||+++.|.+. ...+|+..|.++. T Consensus 260 ~~~pl~~~~nv------i~TPHiag~t~~~~~~~~~~~n~~~~~~g~ 300 (312) T PRK15469 260 PESPLWQHPRV------AITPHVAAVTRPAEAVEYISRTIAQLEKGE 300 (312) T ss_pred CCChhhcCCCe------EECCcCCCCcCHHHHHHHHHHHHHHHHcCC Confidence 99999999999 9999999998743 2345555555443 |
|
>PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=100.00 E-value=1.9e-42 Score=389.59 Aligned_cols=244 Identities=20% Similarity=0.312 Sum_probs=192.5 Q ss_pred cCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHH Q psy13054 78 LKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 (1128) Q Consensus 78 l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~ 157 (1128) ..++|++++.. . .+ . +++||+|++.|+|+||||+++|+++||.++| +|.++.+||||++++||+++|++.. T Consensus 32 ~~~a~~~~~~~-~-----~~-~-~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~ 102 (303) T PRK06436 32 YYDAEAILIKG-R-----YV-P-GKKTKMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICE 102 (303) T ss_pred cCCCCEEEecC-C-----cC-C-CCCeEEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHH Confidence 35788886543 1 12 2 4799999999999999999999999887776 5788999999999999999999998 Q ss_pred HHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCcccc Q psy13054 158 RHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDT 237 (1128) Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~ 237 (1128) .++.++++ .|... .+..+.||++||+|+|+ T Consensus 103 ~~~~~~~g-------------~w~~~------------------~~~~L~gktvgIiG~G~------------------- 132 (303) T PRK06436 103 NNYNMKNG-------------NFKQS------------------PTKLLYNKSLGILGYGG------------------- 132 (303) T ss_pred HHHHHHcC-------------CCCCC------------------CCCCCCCCEEEEECcCH------------------- Confidence 88766542 34310 01235678999999973 Q ss_pred ccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHHHH Q psy13054 238 NHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTL 317 (1128) Q Consensus 238 ~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeL 317 (1128) ||+++++++++|++. +++|+++..+. .....+.+++|+ T Consensus 133 --------------IG~~vA~~l~afG~~--------------------------V~~~~r~~~~~--~~~~~~~~l~el 170 (303) T PRK06436 133 --------------IGRRVALLAKAFGMN--------------------------IYAYTRSYVND--GISSIYMEPEDI 170 (303) T ss_pred --------------HHHHHHHHHHHCCCE--------------------------EEEECCCCccc--CcccccCCHHHH Confidence 678888888877653 23344322111 111125699999 Q ss_pred hhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccC Q psy13054 318 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL 397 (1128) Q Consensus 318 l~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~l 397 (1128) +++||+|++|||+|++|+||||++.|++||||++|||+|||++|||+||++||++|+|+||+||||++||+++++ .+ T Consensus 171 l~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~ 247 (303) T PRK06436 171 MKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NP 247 (303) T ss_pred HhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CC Confidence 999999999999999999999999999999999999999999999999999999999999999999999988776 68 Q ss_pred CCCCCCCcccccccCCC-CChh------hhHHHHHHHHHHH Q psy13054 398 DNCGGAGLDVMIPEPLP-ADHP------LVQLDNCEEFFEE 431 (1128) Q Consensus 398 pNvg~~~~~v~tph~~~-~t~~------~~~~~n~~~~~~~ 431 (1128) ||| ++|||+++ ++.+ ...++|+.+|+++ T Consensus 248 ~nv------iiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g 282 (303) T PRK06436 248 DNV------ILSPHVAGGMSGEIMQPAVALAFENIKNFFEG 282 (303) T ss_pred CCE------EECCccccccCHHHHHHHHHHHHHHHHHHHcC Confidence 999 99999865 4443 2245666666553 |
|
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
---|
Probab=100.00 E-value=1.5e-43 Score=371.10 Aligned_cols=177 Identities=44% Similarity=0.653 Sum_probs=157.6 Q ss_pred HHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh Q psy13054 917 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT 995 (1128) Q Consensus 917 laliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~ 995 (1128) +++||++.|++..+++.+++|.|.. .......+++|+||||||+|+||+++|++|++|||+|++||++..... .. T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~----~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~ 76 (178) T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWAS----RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGAD 76 (178) T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHH----HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHH T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCC----CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcc Confidence 6899999999999999999999921 113345589999999999999999999999999999999998887655 55 Q ss_pred hcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 996 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 996 ~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) ..++.+.+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++ T Consensus 77 ~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~ 156 (178) T PF02826_consen 77 EFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEP 156 (178) T ss_dssp HTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SS T ss_pred cccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCC Confidence 66778889999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCccccCCCeEECCCCC Q psy13054 1076 EPLPADHPLVQLDNCVLTPHTS 1097 (1128) Q Consensus 1076 EPl~~~~pL~~~pNvilTPHia 1097 (1128) ||+|.++|||++|||++|||+| T Consensus 157 EP~~~~~~l~~~~nvi~TPH~a 178 (178) T PF02826_consen 157 EPLPADSPLWDLPNVILTPHIA 178 (178) T ss_dssp SSSSTTHHHHTSTTEEEESS-T T ss_pred CCCCCCChHHcCCCEEEeCccC Confidence 9999999999999999999987 |
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
---|
Probab=100.00 E-value=2.8e-37 Score=323.66 Aligned_cols=176 Identities=32% Similarity=0.505 Sum_probs=142.6 Q ss_pred HHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCC Q psy13054 145 IGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGS 224 (1128) Q Consensus 145 lalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~ 224 (1128) +++||++.|++..++++++++ .|... ....+..+.++++||+|+|+ T Consensus 1 i~l~L~~~R~~~~~~~~~~~~-~W~~~---------------------------~~~~~~~l~g~tvgIiG~G~------ 46 (178) T PF02826_consen 1 IALMLALLRRLPEYHEAQRNG-EWASR---------------------------ERFPGRELRGKTVGIIGYGR------ 46 (178) T ss_dssp HHHHHHHHTTHHHHHHHHHTT-BHHHH---------------------------TTTTBS-STTSEEEEESTSH------ T ss_pred ChHHHHHHhCHHHHHHHHHcC-CCCCC---------------------------cCCCccccCCCEEEEEEEcC------ Confidence 689999999999999887664 44110 01123345678999999973 Q ss_pred CCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccc- Q psy13054 225 QNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSN- 303 (1128) Q Consensus 225 ~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~- 303 (1128) ||+++++++++|++. +++|+++.+.. T Consensus 47 ---------------------------IG~~vA~~l~~fG~~--------------------------V~~~d~~~~~~~ 73 (178) T PF02826_consen 47 ---------------------------IGRAVARRLKAFGMR--------------------------VIGYDRSPKPEE 73 (178) T ss_dssp ---------------------------HHHHHHHHHHHTT-E--------------------------EEEEESSCHHHH T ss_pred ---------------------------CcCeEeeeeecCCce--------------------------eEEecccCChhh Confidence 688999999887653 44555444332 Q ss_pred -ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec Q psy13054 304 -GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128) Q Consensus 304 -~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128) ....++++.+|+|++++||||++|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+||+||| T Consensus 74 ~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV 153 (178) T PF02826_consen 74 GADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDV 153 (178) T ss_dssp HHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS T ss_pred hcccccceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEEC Confidence 3456778889999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCCCcccCCCCCCCCcccccccCC Q psy13054 383 MIPEPLPADHPLVQLDNCGGAGLDVMIPEPL 413 (1128) Q Consensus 383 fe~EPl~~~~pL~~lpNvg~~~~~v~tph~~ 413 (1128) |++||++.++||+++||| ++|||++ T Consensus 154 ~~~EP~~~~~~l~~~~nv------i~TPH~a 178 (178) T PF02826_consen 154 FEPEPLPADSPLWDLPNV------ILTPHIA 178 (178) T ss_dssp -SSSSSSTTHHHHTSTTE------EEESS-T T ss_pred CCCCCCCCCChHHcCCCE------EEeCccC Confidence 999999999999999999 9999985 |
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
>KOG0067|consensus | Back alignment and domain information |
---|
Probab=99.95 E-value=3.3e-28 Score=267.86 Aligned_cols=256 Identities=27% Similarity=0.385 Sum_probs=229.5 Q ss_pred eecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCC Q psy13054 860 LYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW 939 (1128) Q Consensus 860 ~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w 939 (1128) .+-.++++-+++. +-||++...+.|+|++|+.+|.+.||.|||.|+..-+.+|+-++.++|.++|+.....+..++|.| T Consensus 81 h~i~l~reDlEkf-kalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~ 159 (435) T KOG0067|consen 81 HTITLPREDLEKF-KALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTC 159 (435) T ss_pred eecccchhhHHHh-hhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccce Confidence 3567889999997 889999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccc--ccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEE Q psy13054 940 ALKQ--THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFV 1016 (1128) Q Consensus 940 ~~~~--~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l 1016 (1128) .... -..+.......+|.++|++|+|++|++++.++++||+.|+.||++...-....+|.+++ ++++++.+||.+++ T Consensus 160 ~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~ 239 (435) T KOG0067|consen 160 TQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSL 239 (435) T ss_pred eechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceee Confidence 6321 00111122378999999999999999999999999999999999887655566777776 89999999999999 Q ss_pred ecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC-CCCCccccCCCeEECCC Q psy13054 1017 TCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL-PADHPLVQLDNCVLTPH 1095 (1128) Q Consensus 1017 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl-~~~~pL~~~pNvilTPH 1095 (1128) ||-+++.++++|+.-.+++|+.|++++|++||.++|+.+|.++|+.|++.+++ |. -...||.+-||.+.||| T Consensus 240 hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ 312 (435) T KOG0067|consen 240 HCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPH 312 (435) T ss_pred ecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcc Confidence 99999999999999999999999999999999999999999999999999997 22 13468999999999999 Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCC Q psy13054 1096 TSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1096 iag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) .+++++.+..++-+.+...+++-+.|.- T Consensus 313 ta~~~e~~~~e~re~aa~eiR~ai~g~i 340 (435) T KOG0067|consen 313 TAWYSEAASVELREVAALEIRRAITGRI 340 (435) T ss_pred cchhhHHHHHHHHHHHhhhhhhccCCCC Confidence 9999999999999999999998887753 |
|
>KOG0067|consensus | Back alignment and domain information |
---|
Probab=99.89 E-value=1.7e-23 Score=230.86 Aligned_cols=247 Identities=21% Similarity=0.294 Sum_probs=184.9 Q ss_pred HhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhch Q psy13054 76 EKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155 (1128) Q Consensus 76 ~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i 155 (1128) +.+.++-+-.......++++=+++. +.||+|.+.+.|+||+|+.+|.+.||.|||.|+..-+.+|+-++.++|.+.|+- T Consensus 69 kvLneavgam~yh~i~l~reDlEkf-kalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrn 147 (435) T KOG0067|consen 69 KVLNEAVGAMMYHTITLPREDLEKF-KALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRN 147 (435) T ss_pred HHHHHhhhcceeeecccchhhHHHh-hhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhccc Confidence 3344444434444556889999987 679999999999999999999999999999999999999999999999999876 Q ss_pred HHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCcc Q psy13054 156 QQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKT 235 (1128) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t 235 (1128) .......+ ++.|.. .+++.. .|..|. T Consensus 148 tw~cq~l~-------------eg~~~q-----------~~~q~~----------------------------e~a~g~-- 173 (435) T KOG0067|consen 148 TWLCQALR-------------EGTCTQ-----------GLEQVR----------------------------EAACGL-- 173 (435) T ss_pred chhhhhhc-------------ccceee-----------chhhhh----------------------------hhhhcc-- Confidence 64433222 122211 000000 010010 Q ss_pred ccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccc-ccccCCccc-C Q psy13054 236 DTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSN-GTALGAQLV-P 313 (1128) Q Consensus 236 ~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~-~~~~g~~~v-s 313 (1128) .+..|-.++ ++|+|++|++++.++..|+ -.++-||+|-.+. .+.+|.+.| + T Consensus 174 ----------------------~~~~G~~~g--~~g~gr~g~av~~~A~afg---~~~ifydp~~~~g~~~~lg~~rVyt 226 (435) T KOG0067|consen 174 ----------------------ARIRGPTLG--LIGFGRTGQAVALRAKAFG---FVVIFYDPYLIDGIDKSLGLQRVYT 226 (435) T ss_pred ----------------------cccccccee--eeccccccceehhhhhccc---ceeeeecchhhhhhhhhcccceecc Confidence 111222222 5678888888887644332 2344556554443 667888877 8 Q ss_pred HHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCC-CCCC Q psy13054 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL-PADH 392 (1128) Q Consensus 314 LdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl-~~~~ 392 (1128) |+|++.+||.+|+||-+++.++|+||.-.+++|++|++++|++||++||++||.+||++|+|.+++ |. .... T Consensus 227 lqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~ 299 (435) T KOG0067|consen 227 LQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQG 299 (435) T ss_pred cchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------Ccccccc Confidence 999999999999999999999999999999999999999999999999999999999999999998 21 1345 Q ss_pred CcccCCCCCCCCcccccccCCCCCh Q psy13054 393 PLVQLDNCGGAGLDVMIPEPLPADH 417 (1128) Q Consensus 393 pL~~lpNvg~~~~~v~tph~~~~t~ 417 (1128) ||.+.||. +.+||.++++. T Consensus 300 ~l~d~pn~------ic~~~ta~~~e 318 (435) T KOG0067|consen 300 PLKDAPNL------ICTPHTAWYSE 318 (435) T ss_pred cccCCCCC------CCCcccchhhH Confidence 78899998 89999987754 |
|
>PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
---|
Probab=99.80 E-value=5.6e-19 Score=207.04 Aligned_cols=169 Identities=18% Similarity=0.236 Sum_probs=139.8 Q ss_pred ccccCCcC-ChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEE Q psy13054 882 FSVGYDHL-ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVG 960 (1128) Q Consensus 882 ~~aGvd~i-dl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvG 960 (1128) +++|+..+ .++...+.+|+|+|+|++++.++||+++++++++. +..+|.+. ..+.||++| T Consensus 198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~~-------------~~LaGKtVg 258 (476) T PTZ00075 198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRATD-------------VMIAGKTVV 258 (476) T ss_pred chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhcC-------------CCcCCCEEE Confidence 45666553 23344456899999999999999999999999988 33344432 258999999 Q ss_pred EEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCC Q psy13054 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPT 1039 (1128) Q Consensus 961 IIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~g 1039 (1128) |||+|.||+.+|++|++|||+|++++..+.+.. +...|++.+++++++++||+|++|+ .|+++|+++.|++||+| T Consensus 259 VIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpG 334 (476) T PTZ00075 259 VCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNN 334 (476) T ss_pred EECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCC Confidence 999999999999999999999999976655442 3445777789999999999999984 47899999999999999 Q ss_pred cEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC Q psy13054 1040 AILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA 1080 (1128) Q Consensus 1040 a~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~ 1080 (1128) ++|||+||+ |++.++++|+.+. ++||++.||... T Consensus 335 AiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476) T PTZ00075 335 AIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476) T ss_pred cEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC Confidence 999999999 7889999998754 699999999654 |
|
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
---|
Probab=99.67 E-value=1.6e-16 Score=178.75 Aligned_cols=157 Identities=18% Similarity=0.185 Sum_probs=130.1 Q ss_pred cCCChhhhhcCCCCccEEEEccccCCcCChh-hhhhCCcEEE------EcCCCChhHHHHHHHHHHHHHHhccHHHHHHH Q psy13054 862 TSRNKVKTPKRTENLKVITTFSVGYDHLELH-EIKARGIRVG------SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 (1128) Q Consensus 862 ~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~-a~~~~GI~V~------n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~ 934 (1128) .++++++++.+ | .++...+|+++.|++ +|+++||+|+ |++.+|+.++||+++++++.. T Consensus 80 ~~l~~~~l~~~-~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~----------- 144 (287) T TIGR02853 80 VVLTPELLEST-K---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH----------- 144 (287) T ss_pred ccccHHHHHhc-C---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh----------- Confidence 45788999886 5 488899999999999 9999999999 999999999999999988732 Q ss_pred HcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc---cChHhhhcc Q psy13054 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL---VPLDTLCAE 1010 (1128) Q Consensus 935 ~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~---~~l~ell~~ 1010 (1128) .. .+++|++++|+|+|.||+.+|+.|+++|++|.+++++..+.. ..+.+... .++++++++ T Consensus 145 --~~-------------~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~ 209 (287) T TIGR02853 145 --TD-------------FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAE 209 (287) T ss_pred --cC-------------CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhcc Confidence 01 158899999999999999999999999999999987654432 33344443 357789999 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCc-ccCH Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG-LLDQ 1053 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~-lVde 1053 (1128) +|+|++|+|.+ +++++.++.||+++++||++... -+|. T Consensus 210 aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287) T TIGR02853 210 IDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287) T ss_pred CCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH Confidence 99999999974 78899999999999999998754 3444 |
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
>PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
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Probab=99.59 E-value=4.1e-15 Score=174.81 Aligned_cols=170 Identities=15% Similarity=0.128 Sum_probs=126.7 Q ss_pred EcCcccccc-cHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCccccccc Q psy13054 109 TFSVGHDHL-HLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNL 187 (1128) Q Consensus 109 ~~gvG~DnI-Dl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (1128) -.++|+... .++...+.||+|+|+|++++.++||+++++++++...+. |.+ T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~------R~~---------------------- 248 (476) T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGIF------RAT---------------------- 248 (476) T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHHH------Hhc---------------------- Confidence 345666654 333444568999999999999999999999999983333 210 Q ss_pred ccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceee Q psy13054 188 HNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFE 267 (1128) Q Consensus 188 ~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~ 267 (1128) +..+.||+++|+|+|. ||+.++++++++++.+ T Consensus 249 ---------------~~~LaGKtVgVIG~G~---------------------------------IGr~vA~rL~a~Ga~V 280 (476) T PTZ00075 249 ---------------DVMIAGKTVVVCGYGD---------------------------------VGKGCAQALRGFGARV 280 (476) T ss_pred ---------------CCCcCCCEEEEECCCH---------------------------------HHHHHHHHHHHCCCEE Confidence 0113468889998862 6788888888776542 Q ss_pred eeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCC Q psy13054 268 FFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMK 347 (1128) Q Consensus 268 ~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK 347 (1128) .++ ..++.....+...|++.+++++++++||||++|+ .|+|+|+++.|++|| T Consensus 281 iV~------------------------e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MK 332 (476) T PTZ00075 281 VVT------------------------EIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMK 332 (476) T ss_pred EEE------------------------eCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccC Confidence 211 1121111112234777889999999999999984 589999999999999 Q ss_pred CCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCC Q psy13054 348 PTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 389 (1128) Q Consensus 348 ~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~ 389 (1128) ||++|||+||| |+++++++|+++. ++||++.||.. T Consensus 333 pGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476) T PTZ00075 333 NNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476) T ss_pred CCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCC Confidence 99999999999 8999999998754 78999999954 |
|
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
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Probab=99.59 E-value=8.5e-15 Score=146.45 Aligned_cols=81 Identities=27% Similarity=0.261 Sum_probs=67.7 Q ss_pred EEEEecCCCCchHHHHHhhccceeEEeecC-CChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHH Q psy13054 834 TVGIVGLGNIGLETAKLLKAFKVSKILYTS-RNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTV 912 (1128) Q Consensus 834 ~v~i~~~~~~~~e~~~~l~~~~~~~~~~~~-i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sV 912 (1128) ++.+.. ....++..+.++++++++....+ +++++|+.+ |+||||++.|+|+|++|+++|+++||.|+|+||+++.+| T Consensus 20 ~v~~~~-~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aV 97 (133) T PF00389_consen 20 EVEFCD-SPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAV 97 (133) T ss_dssp EEEEES-SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHH T ss_pred eEEEeC-CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcch Confidence 444444 44566788888888877766555 999999998 999999999999999999999999999999999999999 Q ss_pred HHHH Q psy13054 913 AEYN 916 (1128) Q Consensus 913 AE~a 916 (1128) |||+ T Consensus 98 AE~a 101 (133) T PF00389_consen 98 AEHA 101 (133) T ss_dssp HHHH T ss_pred hccc Confidence 9999 |
The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A .... |
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
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Probab=99.57 E-value=7.8e-15 Score=146.71 Aligned_cols=96 Identities=29% Similarity=0.437 Sum_probs=82.7 Q ss_pred ccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128) .+.++.++.|+. .+++.+++. .+.+++.+.++++|+++++..+++++++|+++ |+||+|++.|+|+||||+++ T Consensus 6 ~~~~~~~~~l~~--~~~v~~~~~----~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~ 78 (133) T PF00389_consen 6 PLPDEEIERLEE--GFEVEFCDS----PSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEA 78 (133) T ss_dssp S-SHHHHHHHHH--TSEEEEESS----SSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHH T ss_pred cCCHHHHHHHHC--CceEEEeCC----CCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHH Confidence 467777888873 468888763 46889999999999999987767999999997 89999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHH Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYN 144 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~a 144 (1128) |+++||.|+|+||+++++||||+ T Consensus 79 a~~~gI~V~n~~g~~~~aVAE~a 101 (133) T PF00389_consen 79 AKERGIPVTNVPGYNAEAVAEHA 101 (133) T ss_dssp HHHTTSEEEE-TTTTHHHHHHHH T ss_pred HhhCeEEEEEeCCcCCcchhccc Confidence 99999999999999999999999 |
The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A .... |
>PLN02494 adenosylhomocysteinase | Back alignment and domain information |
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Probab=99.51 E-value=3.3e-14 Score=166.72 Aligned_cols=120 Identities=22% Similarity=0.284 Sum_probs=106.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-hhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .+.||+++|+|+|.||+.+|+++++|||+|++++..+.+. .+...|+..++++++++.+|+|+. +..|+++|+++ T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~vI~~e 326 (477) T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDIIMVD 326 (477) T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccchHHH Confidence 4799999999999999999999999999999998766543 355567777789999999999996 55688999999 Q ss_pred HHccCCCCcEEEEcCC-CcccCHHHHHHH--HhcCCceEEEEeccCCCC Q psy13054 1032 QFSLMKPTAILVNTSR-GGLLDQEALVEF--LKDKKIGGAGLDVMIPEP 1077 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aR-G~lVde~aL~~a--L~~g~i~gaaLDV~e~EP 1077 (1128) .|+.||+|++|||+|| +..||+++|.++ ++.+.+. +.+|+|+.|- T Consensus 327 ~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477) T PLN02494 327 HMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477) T ss_pred HHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC Confidence 9999999999999999 679999999998 9999998 8899998753 |
|
>PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
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Probab=99.43 E-value=1.3e-12 Score=148.06 Aligned_cols=151 Identities=19% Similarity=0.206 Sum_probs=122.1 Q ss_pred CChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCC------ChhHHHHHHHHHHHHHHhccHHHHHHHHcC Q psy13054 864 RNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHI------SSDTVAEYNIGLAIAVSRRFQEGRKCITSG 937 (1128) Q Consensus 864 i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~------~a~sVAE~alaliL~~~R~i~~~~~~~~~g 937 (1128) ++++.++.+ |++..+. .|.+.++++ +.|.++||.+.+.... |+.++||.++.+.+... T Consensus 83 ~~~~~l~~l-~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~------------- 146 (296) T PRK08306 83 LTEELLELT-PEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT------------- 146 (296) T ss_pred chHHHHHhc-CCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC------------- Confidence 467889887 8886444 588889988 8899999999997764 89999999887644110 Q ss_pred CCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc---ChHhhhccCCE Q psy13054 938 EWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV---PLDTLCAESDF 1013 (1128) Q Consensus 938 ~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~---~l~ell~~sDv 1013 (1128) ..+++|++++|||+|.+|+.+++.|+++|++|.+++++..+.. ..+.|.+.+ ++.+.++++|+ T Consensus 147 -------------~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDi 213 (296) T PRK08306 147 -------------PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDI 213 (296) T ss_pred -------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCE Confidence 1146899999999999999999999999999999988765433 445666554 56788999999 Q ss_pred EEEecCCCcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1014 IFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1014 V~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) |++++|. .+++++.++.|++++++||++.. T Consensus 214 VI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296) T PRK08306 214 IFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296) T ss_pred EEECCCh-----hhhhHHHHHcCCCCcEEEEEccC Confidence 9999984 47889999999999999999754 |
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>TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
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Probab=99.40 E-value=5.7e-13 Score=155.48 Aligned_cols=146 Identities=19% Similarity=0.215 Sum_probs=115.9 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .+.|++|+|+|+|.||+.+|++++++|++|++++..+.+.. +...|+...+++++++.+|+|+.+. .+.++|+.+ T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaT----G~~~vI~~~ 267 (406) T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITAT----GNKDVIRGE 267 (406) T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECC----CCHHHHHHH Confidence 47999999999999999999999999999999986665543 4556777778999999999998754 367899999 Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHHHHhcCCceEEEEeccCCCCCCCCCcccc-----CCCeE-ECCCCCCCcHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQ-----LDNCV-LTPHTSSATKAVR 1104 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~-----~pNvi-lTPHiag~t~e~~ 1104 (1128) .|+.||+|++++|+||+.+ ||.++|.+++.+.+..+..+|+|.- |.+++++- +=|+. -++|-+-.-+-++ T Consensus 268 ~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~---~~g~~i~ll~~GrlvNl~~~~ghp~~vmd~sf 344 (406) T TIGR00936 268 HFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL---KDGRRIYLLAEGRLVNLAAAEGHPSEVMDMSF 344 (406) T ss_pred HHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe---CCCCEEEEEeCCceecccCCCCCcceeeCHHH Confidence 9999999999999999998 9999999999887777888999873 43444432 22433 3456555444444 Q ss_pred H Q psy13054 1105 D 1105 (1128) Q Consensus 1105 ~ 1105 (1128) . T Consensus 345 a 345 (406) T TIGR00936 345 A 345 (406) T ss_pred H Confidence 3 |
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
>PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
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Probab=99.37 E-value=7.5e-13 Score=148.61 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=83.8 Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccC Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) ...|.||||||||+|.||+++|++|++|||+|++|++...... +...|++..+++|++++||+|++|+|+ ++|+++++ T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335) T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335) T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHH Confidence 4479999999999999999999999999999999986533322 445577777999999999999999996 78899999 Q ss_pred HHHHccCCCCcEEEEcCCCccc Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lV 1051 (1128) .+.++.||+|++|+-. .|--| T Consensus 90 ~eil~~MK~GaiL~f~-hgfni 110 (335) T PRK13403 90 AEVEENLREGQMLLFS-HGFNI 110 (335) T ss_pred HHHHhcCCCCCEEEEC-CCcce Confidence 9999999999988653 44433 |
|
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
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Probab=99.30 E-value=4.2e-12 Score=143.13 Aligned_cols=157 Identities=18% Similarity=0.189 Sum_probs=112.3 Q ss_pred CCCHHHHhccCCCceEEEEcCcccccccHH-HHHhCCcEEE------ecCCCCchhHHHHHHHHHHHHhhchHHHHHHHH Q psy13054 91 KVDKEVLDRSGENLKVIATFSVGHDHLHLD-EIKSRGIRVG------TVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIA 163 (1128) Q Consensus 91 ~i~~evL~~~~~~LK~I~~~gvG~DnIDl~-aa~erGI~V~------n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~ 163 (1128) ++++++|+++ | .++...+|++|.|++ +|+++||.|+ |++.+|+.+|||+++++++.... T Consensus 81 ~l~~~~l~~~-~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~---------- 146 (287) T TIGR02853 81 VLTPELLEST-K---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTD---------- 146 (287) T ss_pred cccHHHHHhc-C---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcC---------- Confidence 3678999976 3 477889999999999 9999999999 99999999999999987774310 Q ss_pred hhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCcccccccccc Q psy13054 164 RLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKA 243 (1128) Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~ 243 (1128) .+ +.+++++|+|+|. T Consensus 147 ---------------------~~-------------------l~gk~v~IiG~G~------------------------- 161 (287) T TIGR02853 147 ---------------------FT-------------------IHGSNVMVLGFGR------------------------- 161 (287) T ss_pred ---------------------CC-------------------CCCCEEEEEcChH------------------------- Confidence 01 2346788888862 Q ss_pred ccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCC---cccCHHHHhhc Q psy13054 244 FENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGA---QLVPLDTLCAE 320 (1128) Q Consensus 244 fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~---~~vsLdeLl~~ 320 (1128) +|+.+++.++++++.+.++.. ... ......+.+. .+.++++++++ T Consensus 162 --------iG~avA~~L~~~G~~V~v~~R--~~~----------------------~~~~~~~~g~~~~~~~~l~~~l~~ 209 (287) T TIGR02853 162 --------TGMTIARTFSALGARVFVGAR--SSA----------------------DLARITEMGLIPFPLNKLEEKVAE 209 (287) T ss_pred --------HHHHHHHHHHHCCCEEEEEeC--CHH----------------------HHHHHHHCCCeeecHHHHHHHhcc Confidence 577888888776543222211 000 0000111222 23367889999 Q ss_pred CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCC-CccCH Q psy13054 321 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG-GLLDQ 363 (1128) Q Consensus 321 SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG-~lVDe 363 (1128) +|+|++|+|++ +++++.+++||+++++||++-. +-+|- T Consensus 210 aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287) T TIGR02853 210 IDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287) T ss_pred CCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH Confidence 99999999984 8899999999999999999753 33454 |
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
>PLN02712 arogenate dehydrogenase | Back alignment and domain information |
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Probab=99.20 E-value=4.7e-10 Score=139.60 Aligned_cols=110 Identities=20% Similarity=0.341 Sum_probs=87.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhc-cCCEEEEecCCCcccccccCH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCA-ESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~-~sDvV~l~lPlt~~T~~li~~ 1030 (1128) .+.+++|||||+|.||+.+|+.++.+|++|++||+......+.+.|+... ++++++. ++|+|++|+| ...+..++.+ T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi~~ 444 (667) T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVLKS 444 (667) T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHHHH Confidence 67889999999999999999999999999999987643322445666543 7888776 5999999999 5788888876 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) -....||+|+++++++.++-...+++.+.+..+ T Consensus 445 l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~ 477 (667) T PLN02712 445 LPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD 477 (667) T ss_pred HHHhcCCCCcEEEECCCccHHHHHHHHHhccCC Confidence 555579999999999999865566666665543 |
|
>PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
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Probab=99.16 E-value=1.9e-10 Score=152.46 Aligned_cols=108 Identities=18% Similarity=0.131 Sum_probs=93.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCccccccc--CH Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLI--GR 1030 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li--~~ 1030 (1128) ..++|||||+|+||.++|++|...|++|.+||++..+.. ..+.|... .+..+++++||+|++|+|..++++.++ +. T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378) T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378) T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh Confidence 347899999999999999999999999999997765544 44455543 488999999999999999999999887 45 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ..++.|++|.++|+++....-..+.+.+.+++ T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378) T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378) T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh Confidence 67889999999999999999999999999887 |
|
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
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Probab=99.12 E-value=2.1e-10 Score=134.88 Aligned_cols=154 Identities=18% Similarity=0.200 Sum_probs=113.5 Q ss_pred ccccCCcC-ChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEE Q psy13054 882 FSVGYDHL-ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVG 960 (1128) Q Consensus 882 ~~aGvd~i-dl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvG 960 (1128) +++|+..+ ..+...+.+++|.|++..+..+.-|...+.- ++.|.. ........+.|++++ T Consensus 156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~---------------~s~~~a----i~rat~~~l~Gk~Vl 216 (425) T PRK05476 156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTG---------------ESLLDG----IKRATNVLIAGKVVV 216 (425) T ss_pred chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHH---------------hhhHHH----HHHhccCCCCCCEEE Confidence 35565543 3344456789999999988876544333222 222220 000001147899999 Q ss_pred EEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCC Q psy13054 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPT 1039 (1128) Q Consensus 961 IIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~g 1039 (1128) |+|+|.||+.+|++|+++|++|+++|....+.. +...|+...+++++++.+|+|+.+. .+.++|+.+.|+.||+| T Consensus 217 ViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~G 292 (425) T PRK05476 217 VAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDG 292 (425) T ss_pred EECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCC Confidence 999999999999999999999999987665543 4445777678999999999998764 45678999999999999 Q ss_pred cEEEEcCCCcc-cCHHHHHH Q psy13054 1040 AILVNTSRGGL-LDQEALVE 1058 (1128) Q Consensus 1040 a~lIN~aRG~l-Vde~aL~~ 1058 (1128) ++++|+|+... +|.++|.+ T Consensus 293 ailiNvG~~d~Eid~~~L~~ 312 (425) T PRK05476 293 AILANIGHFDNEIDVAALEE 312 (425) T ss_pred CEEEEcCCCCCccChHHHhh Confidence 99999999987 78888754 |
|
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
---|
Probab=99.05 E-value=4.8e-10 Score=114.91 Aligned_cols=102 Identities=22% Similarity=0.354 Sum_probs=76.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .+.||++.|+|||.+|+.+|+.|+++|++|++++..+-+.. +...|++..+++++++++|+++.+.. .+++++.+ T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~~e 95 (162) T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVITGE 95 (162) T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-HH T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccCHH Confidence 58999999999999999999999999999999987665543 56678888899999999999987655 35689999 Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVE 1058 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~ 1058 (1128) .|++||+|+++.|++.... +|-+.|.+ T Consensus 96 ~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162) T PF00670_consen 96 HFRQMKDGAILANAGHFDVEIDVDALEA 123 (162) T ss_dssp HHHHS-TTEEEEESSSSTTSBTHHHHHT T ss_pred HHHHhcCCeEEeccCcCceeEeeccccc Confidence 9999999999999998665 56666554 |
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
>PLN02494 adenosylhomocysteinase | Back alignment and domain information |
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Probab=99.03 E-value=1.3e-10 Score=136.84 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=96.0 Q ss_pred ccCCceeeeeeCCCCCCCCccccccCCccccceeecccccc--cccccccCCcccCHHHHhhcCCEEEEecCCCcccccc Q psy13054 260 LKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFE--RSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 337 (1128) Q Consensus 260 l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~--~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~l 337 (1128) +.|..+. ++|+|.||+.++++..++++ +++.++..+ ...+...|+..++++++++.+|||+. +..|+++ T Consensus 252 LaGKtVv--ViGyG~IGr~vA~~aka~Ga---~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~----tTGt~~v 322 (477) T PLN02494 252 IAGKVAV--ICGYGDVGKGCAAAMKAAGA---RVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVT----TTGNKDI 322 (477) T ss_pred cCCCEEE--EECCCHHHHHHHHHHHHCCC---EEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEE----CCCCccc Confidence 4565544 88999999999998766654 344444322 22344557777899999999999997 6789999 Q ss_pred cCHHHHhcCCCCcEEEEecC-CCccCHHHHHHH--HHcCCeeEEEEecCCCC Q psy13054 338 IGRKQFSLMKPTAILINTSR-GGLLDQEALVEF--LKDKKIGGAGLDVMIPE 386 (1128) Q Consensus 338 In~~~l~~MK~gaiLINtaR-G~lVDe~AL~~A--L~sG~IagAaLDVfe~E 386 (1128) |+++.|++||+|++|||+|| |..||+++|.++ ++.+.+. +++|+|+.| T Consensus 323 I~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477) T PLN02494 323 IMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477) T ss_pred hHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC Confidence 99999999999999999999 689999999998 9999997 999999985 |
|
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
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Probab=98.99 E-value=5.9e-10 Score=115.58 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=90.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCccccccc-CHHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI-GRKQF 1033 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li-~~~~l 1033 (1128) ++|||||+|.||+.+|++|...|.+|.+||+...+.. ..+.+++.+ ++.|+++++|+|++++|..++++.++ +.+.+ T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163) T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163) T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh Confidence 5899999999999999999999999999997766554 455576654 89999999999999999999988876 33378 Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128) +.+++|.++||++....-+...+.+.+++..+.. +|. T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~--vda 118 (163) T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRY--VDA 118 (163) T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEE--EEE T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhcccee--eee Confidence 8999999999999999999999999998766543 454 |
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
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Probab=98.92 E-value=2.5e-09 Score=119.49 Aligned_cols=111 Identities=21% Similarity=0.201 Sum_probs=99.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc-hh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC--HH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-EE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RK 1031 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~-~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~--~~ 1031 (1128) .+||+||+|.||.++|++|..-|..|.+||+...+ .+ ....|.... +..|+.+++|+|++|+|..++.+.++- .. T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286) T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286) T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc Confidence 47999999999999999999999999999988877 33 455677765 678999999999999999999999874 57 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) .++.||+|+++|++|..+......+.+.++++.+.. T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~ 116 (286) T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEF 116 (286) T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcE Confidence 999999999999999999999999999999987655 |
|
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
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Probab=98.87 E-value=5.1e-09 Score=118.54 Aligned_cols=109 Identities=22% Similarity=0.245 Sum_probs=91.5 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCccccccc-C-HHHH Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLI-G-RKQF 1033 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li-~-~~~l 1033 (1128) +|||||+|.||+.+|+.|...|++|++||++..+.. ..+.|... .+.++++++||+|++|+|.++.++.++ + ...+ T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291) T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291) T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh Confidence 589999999999999999999999999987765444 34455543 478899999999999999988888775 3 3467 Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ 1066 (1128) ..+++++++||+++....+.+++.+.++++.+. T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291) T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291) T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC Confidence 889999999999999999999999999886544 |
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
>PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
---|
Probab=98.87 E-value=4.3e-09 Score=120.19 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=92.0 Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCCCccccccc Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLI 1028 (1128) Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li 1028 (1128) ...+.|++|||||+|+||+++|+.|+.+|++|++++++..+.. +.+.|+...+.++++++||+|++++|.+.. ..++ T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330) T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330) T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHH Confidence 3478999999999999999999999999999998876644432 445677777999999999999999997665 7788 Q ss_pred CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1029 ~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) +++.+..|++|+++ -.+.|--+.. +. ..-+..+||+.-.|-.+.+ T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G~~i~~--~~------~~p~~~~~Vi~vaPn~Pg~ 135 (330) T PRK05479 91 EEEIEPNLKEGAAL-AFAHGFNIHF--GQ------IVPPADVDVIMVAPKGPGH 135 (330) T ss_pred HHHHHhcCCCCCEE-EECCCCChhh--ce------eccCCCCcEEEeCCCCCch Confidence 77888999999988 5555522211 11 0013346788777755444 |
|
>TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
---|
Probab=98.85 E-value=6.2e-09 Score=121.96 Aligned_cols=143 Identities=15% Similarity=0.120 Sum_probs=102.8 Q ss_pred eeCCCCCCCCccccccCCccccceeecc--cccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcC Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGY--NWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 346 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~--~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~M 346 (1128) ++|+|.||+.+++...++++ +++.+ ++.....+...|++.++++|+++.+|+|+.. ..+.++|+.+.|+.| T Consensus 200 ViG~G~IG~~vA~~ak~~Ga---~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVIta----TG~~~vI~~~~~~~m 272 (406) T TIGR00936 200 VAGYGWCGKGIAMRARGMGA---RVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITA----TGNKDVIRGEHFENM 272 (406) T ss_pred EECCCHHHHHHHHHHhhCcC---EEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEEC----CCCHHHHHHHHHhcC Confidence 67888888777776554432 33344 3322223344577778999999999999764 358999999999999 Q ss_pred CCCcEEEEecCCCc-cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCC-----CCCCCCcccccccCCCCChhhh Q psy13054 347 KPTAILINTSRGGL-LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD-----NCGGAGLDVMIPEPLPADHPLV 420 (1128) Q Consensus 347 K~gaiLINtaRG~l-VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lp-----Nvg~~~~~v~tph~~~~t~~~~ 420 (1128) |+|++|+|+||+.+ ||.++|.+++.+.+..+..+|+|.- |.+++++-+. |.+. -++|+.....-.+ T Consensus 273 K~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~---~~g~~i~ll~~GrlvNl~~-----~~ghp~~vmd~sf 344 (406) T TIGR00936 273 KDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL---KDGRRIYLLAEGRLVNLAA-----AEGHPSEVMDMSF 344 (406) T ss_pred CCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe---CCCCEEEEEeCCceecccC-----CCCCcceeeCHHH Confidence 99999999999999 9999999999998888999999984 4455655433 3321 2457766544445 Q ss_pred HHHHHH Q psy13054 421 QLDNCE 426 (1128) Q Consensus 421 ~~~n~~ 426 (1128) +.|.+. T Consensus 345 a~q~la 350 (406) T TIGR00936 345 ANQALA 350 (406) T ss_pred HHHHHH Confidence 555543 |
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
>PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
---|
Probab=98.84 E-value=6.2e-09 Score=118.04 Aligned_cols=111 Identities=21% Similarity=0.240 Sum_probs=93.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC--HHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 1032 (1128) ++|||||+|.||+.+|+.+...|.+|++||++..+.. ..+.+...+ ++++++++||+|++|+|.++.++.++. ... T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296) T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296) T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH Confidence 4799999999999999999999999999987665543 344565544 789999999999999999888888763 346 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +..+++|.++||+++..+...+++.+.+++..+.. T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~ 117 (296) T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEM 117 (296) T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcE Confidence 78899999999999999988899999998765544 |
|
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
---|
Probab=98.83 E-value=9.3e-09 Score=120.89 Aligned_cols=102 Identities=21% Similarity=0.320 Sum_probs=88.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .+.|++|+|+|+|.||+.+|+.++++|++|+++|..+.+.. +...|+..+++++.++.+|+|+.+.. +.++++.+ T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~~~ 274 (413) T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIITGE 274 (413) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHHHH Confidence 47899999999999999999999999999999987766654 66778877788899999999997643 45688988 Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVE 1058 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~ 1058 (1128) .|+.||+|++++|+|++.+ +|..+|.. T Consensus 275 ~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413) T cd00401 275 HFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413) T ss_pred HHhcCCCCcEEEEeCCCCCccCHHHHHh Confidence 9999999999999999886 78888764 |
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
---|
Probab=98.78 E-value=2.1e-08 Score=114.19 Aligned_cols=111 Identities=23% Similarity=0.348 Sum_probs=94.0 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhcc---CCEEEEecCCCcccccccCHHH Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAE---SDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~---sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) +|||||+|+||+.+|+.|...|.+|++||++.++.+ ..+.|.... +.++++++ +|+|++|+|..+.++.+++ +. T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i 80 (299) T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL 80 (299) T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH Confidence 699999999999999999999999999997765544 445566544 78888876 6999999998888888884 67 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEe Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLD 1071 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLD 1071 (1128) +..+++|.++||+++....+...+.+.+++..+.. +| T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~--vd 117 (299) T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHY--VD 117 (299) T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeE--Ee Confidence 78899999999999999999999999998876543 56 |
|
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=98.77 E-value=1.7e-08 Score=114.66 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=95.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccC--HHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIG--RKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 1032 (1128) ++|||||+|.||..+|+.|...|.+|.+||++..+.. ..+.+... .+..+++++||+|++|+|....++.++. ... T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296) T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296) T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH Confidence 3799999999999999999999999999998766554 34455544 4788999999999999998887887764 346 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128) +..+++|.++||++++.+...+.+.+.+.+..+.. +|. T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~--lda 119 (296) T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSM--MDV 119 (296) T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcE--EEc Confidence 77899999999999999999999999999887653 554 |
|
>PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
---|
Probab=98.70 E-value=6.3e-08 Score=110.05 Aligned_cols=169 Identities=18% Similarity=0.166 Sum_probs=113.1 Q ss_pred HhcCCceEEEeCCC----------------CCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCC---- Q psy13054 76 EKLKGCSALLCNPH----------------QKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPV---- 135 (1128) Q Consensus 76 ~~l~~adaIi~~~~----------------~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~---- 135 (1128) +.++++|+|+.-.. ..++++.++.+ +++..+. .|.+.+++| +.|++|||.|.+.+.. T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l-~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296) T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELT-PEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296) T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhc-CCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh Confidence 45688999986311 12478999987 5666443 599999999 8899999999988865 Q ss_pred --CchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee Q psy13054 136 --SSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128) Q Consensus 136 --~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128) |+.++||.++.+.+... . .. ..+++++| T Consensus 128 ~~ns~~~aegav~~a~~~~---~----------------------------~~-------------------l~g~kvlV 157 (296) T PRK08306 128 ILNSIPTAEGAIMMAIEHT---P----------------------------IT-------------------IHGSNVLV 157 (296) T ss_pred hhccHhHHHHHHHHHHHhC---C----------------------------CC-------------------CCCCEEEE Confidence 88899999776543210 0 00 12466777 Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128) Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128) +|.|. +|+.+++.+++++..+ T Consensus 158 iG~G~---------------------------------iG~~~a~~L~~~Ga~V-------------------------- 178 (296) T PRK08306 158 LGFGR---------------------------------TGMTLARTLKALGANV-------------------------- 178 (296) T ss_pred ECCcH---------------------------------HHHHHHHHHHHCCCEE-------------------------- Confidence 77752 4566666666554321 Q ss_pred eccccc--ccccccccCCccc---CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEec--CCCccC Q psy13054 294 FGYNWF--ERSNGTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS--RGGLLD 362 (1128) Q Consensus 294 ~g~~~~--~~~~~~~~g~~~v---sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINta--RG~lVD 362 (1128) ..+++. .......+|++.+ ++.+.++++|+|+.++|. ++++++.++.||+++++|+++ .|+ +| T Consensus 179 ~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~pgg-td 248 (296) T PRK08306 179 TVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASKPGG-TD 248 (296) T ss_pred EEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccCCCC-cC Confidence 112211 1111223455544 567789999999999884 689999999999999999997 444 54 |
|
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
---|
Probab=98.65 E-value=8.1e-08 Score=109.42 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=95.0 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhcc---CCEEEEecCCCcccccccCHHH Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAE---SDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~---sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) +|||||+|.||+++|+.|...|.+|.+||++..+.. ..+.|+... +++++++. +|+|++++|..+.++.+++ .. T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~l 80 (301) T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-EL 80 (301) T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-HH Confidence 699999999999999999999999999998766544 445676655 78888876 6999999998878888874 67 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128) +..+++|.++|+++++.......+.+.+++..+.. +|. T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~--~da 118 (301) T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHF--VDV 118 (301) T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEE--EeC Confidence 78899999999999999999999999998887654 464 |
|
>PLN02256 arogenate dehydrogenase | Back alignment and domain information |
---|
Probab=98.64 E-value=2.4e-07 Score=105.66 Aligned_cols=108 Identities=19% Similarity=0.327 Sum_probs=84.1 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc-cChHhhh-ccCCEEEEecCCCcccccccCHH Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL-VPLDTLC-AESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~-~~l~ell-~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) -.+++|||||+|.||+.+|+.++..|.+|++|+++.....+...|+.. .++++++ .++|+|++|+|. ..+..++.+- T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l 112 (304) T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL 112 (304) T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh Confidence 467899999999999999999999999999999775332244556644 3677776 479999999994 4677777543 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ....+++++++++++..+-+..+++.+.+.. T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304) T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304) T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCC Confidence 3567899999999999776666677776654 |
|
>PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
---|
Probab=98.53 E-value=2e-07 Score=112.18 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=99.8 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh----cCCc----ccChHhhhcc---CCEEEEecCCCcccc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA----LGAQ----LVPLDTLCAE---SDFIFVTCALTKDTE 1025 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~----~g~~----~~~l~ell~~---sDvV~l~lPlt~~T~ 1025 (1128) +||+||+|.||+.+|++|..-|.+|.+||+..++.+ ..+ .|.. ..+++|+.+. +|+|++|+|..+.++ T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493) T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493) T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH Confidence 699999999999999999999999999998776654 222 1432 3478888876 999999999999999 Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP 1077 (1128) .++ ...+..+++|.++|+++....-+...+.+.+++..+.....=|.-.++ T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493) T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493) T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH Confidence 998 478899999999999999999999999999999888765555555544 |
|
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=98.52 E-value=2.6e-07 Score=103.76 Aligned_cols=111 Identities=20% Similarity=0.331 Sum_probs=92.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) -+.||++.|.|||.+|+-+|.+++++|++|++..-.+-+.. +.-.|++..++++..+.+||++.+.- ++++|..+ T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~e 281 (420) T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRKE 281 (420) T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCHH Confidence 48999999999999999999999999999999876665554 56678888999999999999997654 66899999 Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHHH-HhcCCceE Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVEF-LKDKKIGG 1067 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~a-L~~g~i~g 1067 (1128) .|..||+|+++-|.|.-.+ ||..+|.+. ++...+.. T Consensus 282 h~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~ 319 (420) T COG0499 282 HFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRP 319 (420) T ss_pred HHHhccCCeEEecccccceeccHHHHHHhhhhHhcccc Confidence 9999999999999998887 676666533 34444444 |
|
>PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
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Probab=98.52 E-value=2.5e-07 Score=105.02 Aligned_cols=113 Identities=21% Similarity=0.190 Sum_probs=92.2 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCH--HHHc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR--KQFS 1034 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~--~~l~ 1034 (1128) +|||||+|+||..+|+.|...|.+|.+||+........+.|...+ +..+++++||+|++++|..+..+.++.. ..++ T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292) T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292) T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc Confidence 699999999999999999999999999987654322444566543 7889999999999999988888877632 3677 Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec Q psy13054 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128) Q Consensus 1035 ~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128) .+++|.++|+++....-....+.+.+++..+. .+|. T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292) T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292) T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe Confidence 88999999999999999999999998887554 3553 |
|
>TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
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Probab=98.47 E-value=3e-07 Score=105.13 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=75.3 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-h-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-E-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) |.||+|||||+|+||+++|+.|+.+|++|++++++..+. . +.+.|+...+..+++++||+|++++|.... ...+.++ T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e 79 (314) T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE 79 (314) T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH Confidence 578999999999999999999999999988776554322 2 345677767888999999999999995433 3445566 Q ss_pred HHccCCCCcEEEEcCCCccc Q psy13054 1032 QFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lV 1051 (1128) ....|+++. +|.++.|--+ T Consensus 80 i~~~l~~g~-iVs~aaG~~i 98 (314) T TIGR00465 80 IQPLLKEGK-TLGFSHGFNI 98 (314) T ss_pred HHhhCCCCc-EEEEeCCccH Confidence 778888886 8888888654 |
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
>PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
---|
Probab=98.44 E-value=1.4e-07 Score=110.12 Aligned_cols=97 Identities=23% Similarity=0.211 Sum_probs=75.8 Q ss_pred cccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC------CCch-hhhhcCCcccChHhhhccCCEEEEecCCCccc Q psy13054 952 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR------RVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 952 ~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~------~~~~-~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) ..|.||||+|||+|.+|++-|..|+..|.+|++--+. ...- .+.+.|++..+++|++++||+|++.+|++ + T Consensus 32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt-~- 109 (487) T PRK05225 32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDK-Q- 109 (487) T ss_pred HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChH-H- Confidence 4799999999999999998888888888887633222 1121 14446777789999999999999999999 4 Q ss_pred ccccCHHHHccCCCCcEEEEcCCCccc Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lV 1051 (1128) ++.+.++.+..||+|++|. -|.|=.| T Consensus 110 q~~v~~~i~p~LK~Ga~L~-fsHGFni 135 (487) T PRK05225 110 HSDVVRAVQPLMKQGAALG-YSHGFNI 135 (487) T ss_pred HHHHHHHHHhhCCCCCEEE-ecCCcee Confidence 7778899999999999985 3455443 |
|
>KOG0409|consensus | Back alignment and domain information |
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Probab=98.43 E-value=6.1e-07 Score=99.21 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=100.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCccccccc-- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI-- 1028 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li-- 1028 (1128) ....++||+||+|.||..++..|-..|.+|++||++.++.. ..+.|.+.. +..|+.+.||+|+.++|.....+.++ T Consensus 32 ~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g 111 (327) T KOG0409|consen 32 TPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLG 111 (327) T ss_pred CcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcC Confidence 45688999999999999999999999999999998888876 677787765 89999999999999999999999887 Q ss_pred CHHHHccCCCCcEE-EEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1029 GRKQFSLMKPTAIL-VNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1029 ~~~~l~~mk~ga~l-IN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +...|+..++|... |+++.-+.--...|.++++...... T Consensus 112 ~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~ 151 (327) T KOG0409|consen 112 KSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRF 151 (327) T ss_pred CCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeE Confidence 33578888888888 9999999988899999998875433 |
|
>PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
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Probab=98.41 E-value=4.6e-07 Score=102.54 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=67.8 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCcccc-----CchhhhHHHHHhhc-------CCChhhhhhhhH Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-----GQLFSLVYDFCRYS-------IGGVTIKRLVKK 764 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~~-----~~~~~~~~~la~~~-------pg~~~t~~l~~~ 764 (1128) ..|+||||||||+|+||+++|++|++|||+|++|+++.+..+ +....-+.+++++| |- ++|+++++. T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335) T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335) T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH Confidence 458999999999999999999999999999999976432211 22122388888888 85 888999999 Q ss_pred HHHHHhc-ceEEee-eee--cccCCCcc Q psy13054 765 TFILSFG-GLVVTV-LHV--HIGDLPAE 788 (1128) Q Consensus 765 ~~l~~~~-~~~~~~-~~~--~~~~~~~~ 788 (1128) +++..++ +.++.- |.. |.+.|-|+ T Consensus 91 eil~~MK~GaiL~f~hgfni~~~~i~pp 118 (335) T PRK13403 91 EVEENLREGQMLLFSHGFNIHFGQINPP 118 (335) T ss_pred HHHhcCCCCCEEEECCCcceecCceeCC Confidence 9999986 334433 333 66665543 |
|
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
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Probab=98.40 E-value=3.4e-07 Score=93.73 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=69.6 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) |.+|+|+|||||.-|++.|..|+.-|++|++-.+...+.. +++.|++..+.+|..++||+|.+.+|.. .-..++.++ T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~~ 80 (165) T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDE-VQPEVYEEE 80 (165) T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HH-HHHHHHHHH T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChH-HHHHHHHHH Confidence 6799999999999999999999999999988776555332 7788999999999999999999999943 333466788 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) ....||+|+.|+= +.|- T Consensus 81 I~p~l~~G~~L~f-ahGf 97 (165) T PF07991_consen 81 IAPNLKPGATLVF-AHGF 97 (165) T ss_dssp HHHHS-TT-EEEE-SSSH T ss_pred HHhhCCCCCEEEe-CCcc Confidence 8889999998763 4444 |
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
>PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
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Probab=98.39 E-value=7.2e-07 Score=119.14 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=99.3 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCccccccc--CH Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI--GR 1030 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li--~~ 1030 (1128) ..++||+||+|.||..+|++|..-|.+|.+||++..+.+ ..+.|+..+ +..|+.++||+|++|+|..+.++.++ .. T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378) T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378) T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh Confidence 357899999999999999999999999999998766655 555677654 89999999999999999999999887 34 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128) ..++.+++|.++|++|....-....+.+.+++..-...-+|. T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa 124 (1378) T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA 124 (1378) T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc Confidence 678889999999999999999999999999876511223664 |
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>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
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Probab=98.37 E-value=1.4e-06 Score=99.12 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=88.1 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhh---hccCCEEEEecCCCcccccccCHHH Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTL---CAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~el---l~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) +|||||+|.||..+|+.|...|.+|.+||++..+.+ ..+.+... .+++++ +.++|+|++++|.. .++.+++ +. T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~-~l 79 (298) T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLE-EL 79 (298) T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHH-HH Confidence 699999999999999999999999999987766544 33444432 355554 45789999999977 8888884 67 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) ...+++|.++|+++.+...+...+.+.+++..+.. T Consensus 80 ~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~ 114 (298) T TIGR00872 80 APTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHL 114 (298) T ss_pred HhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeE Confidence 78889999999999999999999999998876643 |
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
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Probab=98.34 E-value=8.9e-07 Score=100.30 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=88.9 Q ss_pred EEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC--HHHHccC Q psy13054 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQFSLM 1036 (1128) Q Consensus 961 IIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~--~~~l~~m 1036 (1128) |||+|.||.++|+.|...|.+|.+||++..+.. ..+.|.... ++.+++++||+|++|+|..+.++.++. ...+..+ T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288) T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288) T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC Confidence 689999999999999999999999997766544 445566544 789999999999999998788887762 4567789 Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEe Q psy13054 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLD 1071 (1128) Q Consensus 1037 k~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLD 1071 (1128) ++|.++||++...+-....+.+.+++..+.. +| T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~--vd 113 (288) T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVF--MD 113 (288) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcE--EE Confidence 9999999999888777788888887765543 55 |
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
---|
Probab=98.32 E-value=3.1e-06 Score=96.16 Aligned_cols=103 Identities=24% Similarity=0.229 Sum_probs=78.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh------------hhhcC-------------CcccChHhhhccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE------------GTALG-------------AQLVPLDTLCAES 1011 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~------------~~~~g-------------~~~~~l~ell~~s 1011 (1128) ++|||||+|.||..+|+.+...|++|++||++....+ ..+.| ....+-.+.++.| T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295) T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295) T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC Confidence 6899999999999999999999999999997765432 01111 1223333568999 Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEE-EcCCCcccCHHHHHHHHhc Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILV-NTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~lVde~aL~~aL~~ 1062 (1128) |+|+.|+|..++.+..+-++..+.++++++++ |+|.-. ...+.+.++. T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~~ 133 (295) T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQR 133 (295) T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcCC Confidence 99999999999988877777777899999997 777664 4456666543 |
|
>PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=98.30 E-value=3.3e-06 Score=101.13 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=96.4 Q ss_pred CeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCch-h-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 957 ATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKE-E-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 957 ktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) ++|+||| +|.||+.+|+.|+..|.+|.+|+++.... . +.+.|+... +.++.+.++|+|++++|. +.+..++ ++. T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437) T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437) T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH Confidence 3799998 99999999999999999999998765543 2 344566544 678899999999999995 4556666 456 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCC-CCCccccCCCeEECCCC Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCVLTPHT 1096 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~-~~~pL~~~pNvilTPHi 1096 (1128) ...+++++++++++.......+++.+.+..+. .+...-|+. +..|++.-..+++||+- T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437) T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTE 137 (437) T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCC Confidence 67789999999999876665666666654321 122223441 23467777889999976 |
|
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=98.28 E-value=1.7e-06 Score=104.07 Aligned_cols=118 Identities=16% Similarity=0.213 Sum_probs=97.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc----CCc---ccChHhhhc---cCCEEEEecCCCcccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL----GAQ---LVPLDTLCA---ESDFIFVTCALTKDTE 1025 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~----g~~---~~~l~ell~---~sDvV~l~lPlt~~T~ 1025 (1128) .+|||||+|.||..+|++|..-|.+|.+||++..+.+ ..+. |.. ..+++|+++ ++|+|++++|..+.++ T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470) T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470) T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH Confidence 3799999999999999999999999999997776643 2221 422 347888886 5899999999999999 Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) .++ .+.+..+++|.++|+++.+..-|+..+.+.+++..+.....=|.-. T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470) T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470) T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC Confidence 998 4678889999999999999999999999999998877644334443 |
|
>PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=98.25 E-value=5.3e-06 Score=94.82 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=91.2 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh-hhhcCCc---ccChHhhhccCCEEEEecCCCcccccccC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE-GTALGAQ---LVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~-~~~~g~~---~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) .++|+|||+|.||..+|+.++..|. +|++||++..... ....|.. ..++++.++++|+|++++|.. .+..++ T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307) T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307) T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH- Confidence 4689999999999999999998884 8999987655433 3344431 236788899999999999953 333343 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEE-eccCCC---CCCCCCccccCCCeEECCCCCCCcHHHHH Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGL-DVMIPE---PLPADHPLVQLDNCVLTPHTSSATKAVRD 1105 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaL-DV~e~E---Pl~~~~pL~~~pNvilTPHiag~t~e~~~ 1105 (1128) ++....++++.++++++....--.+++.+.+.. .+...+. =++-.| |-....+|+.-.++++||+-++ +.+..+ T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~~~~ 161 (307) T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPAAVA 161 (307) T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHHHHH Confidence 345567899999999977543222333333322 1111111 111111 1112236666678999997554 344443 |
|
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
---|
Probab=98.24 E-value=5e-06 Score=89.37 Aligned_cols=109 Identities=20% Similarity=0.272 Sum_probs=85.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhc-cCCEEEEecCCCcccccccC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCA-ESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~-~sDvV~l~lPlt~~T~~li~ 1029 (1128) ++.||+++|+|+|++|+.+|+.|..+|++|+++|.+..+.. ....+.+.++.++++. ++|+++.|... ++|+ T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~-----~~I~ 99 (200) T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALG-----GVIN 99 (200) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccc-----cccC Confidence 48999999999999999999999999999999987655433 2333666667778776 79999976663 5899 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ++.++.|+ .-+++--+-+.+-| ..-.+.|++..|... T Consensus 100 ~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~ 136 (200) T cd01075 100 DDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGILYA 136 (200) T ss_pred HHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCEEe Confidence 99999997 45788888887766 556677777776554 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
>PLN02712 arogenate dehydrogenase | Back alignment and domain information |
---|
Probab=98.24 E-value=1.6e-06 Score=108.43 Aligned_cols=109 Identities=18% Similarity=0.312 Sum_probs=81.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhh-ccCCEEEEecCCCcccccccCH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLC-AESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell-~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) .-+.++|||||+|.||+.+|+.++.+|++|++||++.....+.+.|+... ++++++ .++|+|++|+|. ..+..++.. T Consensus 49 ~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~ 127 (667) T PLN02712 49 NTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKS 127 (667) T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHh Confidence 34557899999999999999999999999999987643333555666543 678865 569999999994 578888876 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) -.+..|+++++++|++.-+..--+++.+.+.. T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~ 159 (667) T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE 159 (667) T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC Confidence 44567999999999976553323444555443 |
|
>KOG1370|consensus | Back alignment and domain information |
---|
Probab=98.24 E-value=2e-06 Score=94.34 Aligned_cols=93 Identities=23% Similarity=0.328 Sum_probs=80.5 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) +.||.+.|-|||.+|+..|+.|++||++|++-.-.+-... +.-.|++.++++|+.++.||++.+. -.+.+|..+. T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~H 287 (434) T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGEH 287 (434) T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHHH Confidence 6899999999999999999999999999987654444443 5567889999999999999999644 4678999999 Q ss_pred HccCCCCcEEEEcCCCcc Q psy13054 1033 FSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~l 1050 (1128) |.+||+++++.|++.-.+ T Consensus 288 ~~~mk~d~IvCN~Ghfd~ 305 (434) T KOG1370|consen 288 FDQMKNDAIVCNIGHFDT 305 (434) T ss_pred HHhCcCCcEEeccccccc Confidence 999999999999998765 |
|
>TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
---|
Probab=98.22 E-value=2.6e-06 Score=99.87 Aligned_cols=94 Identities=17% Similarity=0.338 Sum_probs=75.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-hhcCCc-------ccChHhhhccCCEEEEecCCC-c Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-TALGAQ-------LVPLDTLCAESDFIFVTCALT-K 1022 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-~~~g~~-------~~~l~ell~~sDvV~l~lPlt-~ 1022 (1128) .+.+++|.|||+|.+|+.+++.++++|++|.++|++..+.+ . ...+.. ..++.+.++++|+|+.+++.+ . T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370) T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370) T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC Confidence 46788999999999999999999999999999987655433 1 122221 124678889999999998653 3 Q ss_pred ccccccCHHHHccCCCCcEEEEcC Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .+..+|+++.++.||+++++||++ T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370) T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370) T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe Confidence 356689999999999999999997 |
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
---|
Probab=98.21 E-value=5.5e-06 Score=98.77 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=94.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-----------------ccChHhhhccCCEEEEecC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-----------------LVPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-----------------~~~l~ell~~sDvV~l~lP 1019 (1128) .+|||||+|.||..+|..+.. |.+|++||....+.+....|.. ..+..+.+++||++++|+| T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425) T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425) T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC Confidence 679999999999999999877 7999999988776552223322 2333457899999999999 Q ss_pred CC------ccccccc--CHHHHccCCCCcEEEEcCCCcccCHHHHHHHH-hc--CCceEEEE-eccCCCCCCCCCc---c Q psy13054 1020 LT------KDTEQLI--GRKQFSLMKPTAILVNTSRGGLLDQEALVEFL-KD--KKIGGAGL-DVMIPEPLPADHP---L 1084 (1128) Q Consensus 1020 lt------~~T~~li--~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL-~~--g~i~gaaL-DV~e~EPl~~~~p---L 1084 (1128) .. ++...++ .....+.+++|.++|+.|.-.+-..+.+++.+ ++ |.-.+-.. =+|.|||+.+... + T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425) T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425) T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc Confidence 65 3345555 33566889999999999999999888765554 33 22111111 1467899876544 4 Q ss_pred ccCCCeEE Q psy13054 1085 VQLDNCVL 1092 (1128) Q Consensus 1085 ~~~pNvil 1092 (1128) ...|.++. T Consensus 166 ~~~~riv~ 173 (425) T PRK15182 166 TNIKKITS 173 (425) T ss_pred cCCCeEEE Confidence 45555643 |
|
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=98.20 E-value=5.6e-06 Score=98.57 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=96.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc---cChHhhh---------------ccCCEEEEec Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL---VPLDTLC---------------AESDFIFVTC 1018 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~---~~l~ell---------------~~sDvV~l~l 1018 (1128) ++|+|||+|.||..+|..|...|.+|++||....+.+....|... ..+++++ +.||+|++|+ T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415) T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415) T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc Confidence 689999999999999999999999999999776654432222211 2344443 3799999999 Q ss_pred CCC------ccccccc--CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce-------EEEEe---ccCCCCCCC Q psy13054 1019 ALT------KDTEQLI--GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG-------GAGLD---VMIPEPLPA 1080 (1128) Q Consensus 1019 Plt------~~T~~li--~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~-------gaaLD---V~e~EPl~~ 1080 (1128) |.. ++...+. -......+++|+++|+.|.-.+-..+.+...+.+.... |.+.| ++.+|-+.+ T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~ 163 (415) T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLP 163 (415) T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCC Confidence 964 2223332 13566778999999999998888888888777653211 11223 466666655 Q ss_pred CCccc---cCCCeEECCCCCCCcHHHHHHH Q psy13054 1081 DHPLV---QLDNCVLTPHTSSATKAVRDEK 1107 (1128) Q Consensus 1081 ~~pL~---~~pNvilTPHiag~t~e~~~~~ 1107 (1128) .+.+. ..|.+ +||.+.++.+++ T Consensus 164 G~~~~~~~~~~~v-----vgG~~~~~~~~~ 188 (415) T PRK11064 164 GQVMVELIKNDRV-----IGGMTPVCSARA 188 (415) T ss_pred CChhhhhcCCCEE-----EEeCCHHHHHHH Confidence 54443 33333 255566665544 |
|
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
---|
Probab=98.17 E-value=4.2e-06 Score=100.69 Aligned_cols=110 Identities=17% Similarity=0.217 Sum_probs=90.2 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc---C--Ccc-cChHhhh---ccCCEEEEecCCCcccccc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL---G--AQL-VPLDTLC---AESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~---g--~~~-~~l~ell---~~sDvV~l~lPlt~~T~~l 1027 (1128) .|||||+|.||+.+|++|..-|.+|.+||++..+.+ ..+. + +.. .+++++. +++|+|++++|..+.+..+ T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467) T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467) T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH Confidence 389999999999999999999999999998776554 2222 2 222 3677766 4699999999998888888 Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ++ +.+..+++|.++|+++....-|+..+.+.+++..+... T Consensus 81 i~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fv 120 (467) T TIGR00873 81 IN-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFV 120 (467) T ss_pred HH-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEE Confidence 84 67788999999999999999999999999988877644 |
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
---|
Probab=98.14 E-value=3.7e-06 Score=99.46 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=49.8 Q ss_pred cCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc-cCHHHHHH Q psy13054 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL-LDQEALVE 368 (1128) Q Consensus 307 ~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l-VDe~AL~~ 368 (1128) .|++..+++++++.+|+|+.++ .+.++|+.+.|+.||+|++++|+||... +|.++|.+ T Consensus 254 ~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425) T PRK05476 254 DGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEE 312 (425) T ss_pred cCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh Confidence 3666678999999999998753 6788999999999999999999999887 78888754 |
|
>PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
---|
Probab=98.13 E-value=1.3e-05 Score=90.43 Aligned_cols=130 Identities=19% Similarity=0.202 Sum_probs=84.9 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc--ccChHhhhccCCEEEEecCCCcccccccCHHHHc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ--LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~--~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128) +|||||+|.||..+|..|+..|.+|.+||++....+ +.+.|.. ..+..+.++++|+|++++|.. .+..++ ++... T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~~ 79 (279) T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLIP 79 (279) T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHHH Confidence 699999999999999999999999999997654433 3334431 223335789999999999944 334444 45667 Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC---------CCccccCCCeEECCCCCC Q psy13054 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA---------DHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1035 ~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~---------~~pL~~~pNvilTPHiag 1098 (1128) .+++++++++++.-..- .++++....-.. +... |+.. ..-|+.-.++++||+-.. T Consensus 80 ~l~~~~ii~d~~Svk~~----~~~~~~~~~~~~--v~~H---Pm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~ 143 (279) T PRK07417 80 ALPPEAIVTDVGSVKAP----IVEAWEKLHPRF--VGSH---PMAGTAESGVEAGQRGLFKNRPWVLTPTENT 143 (279) T ss_pred hCCCCcEEEeCcchHHH----HHHHHHHhhCCc--eeeC---CcCCCCcchHHHhhHHHhCCCcEEEccCCCC Confidence 78999999999876532 233332211111 1111 3211 112566788999998654 |
|
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=98.11 E-value=5.5e-06 Score=94.79 Aligned_cols=84 Identities=21% Similarity=0.300 Sum_probs=68.9 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128) .+++|||||+|.+|+++|++|...|.+|.+|+++.. .+++++++++|+|++++|. +..+.+++. ... T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~ 69 (308) T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQA 69 (308) T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHH Confidence 457899999999999999999999999999986532 3678899999999999997 578887743 222 Q ss_pred -cCCCCcEEEEcCCCccc Q psy13054 1035 -LMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1035 -~mk~ga~lIN~aRG~lV 1051 (1128) .+++++++|++++|-.. T Consensus 70 ~~~~~~~ivi~~s~gi~~ 87 (308) T PRK14619 70 LNLPPETIIVTATKGLDP 87 (308) T ss_pred hcCCCCcEEEEeCCcccC Confidence 47899999999885443 |
|
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=98.07 E-value=2.3e-05 Score=88.88 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=81.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-------hcC-----------------Ccc-cChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-------ALG-----------------AQL-VPLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-------~~g-----------------~~~-~~l~ell~~ 1010 (1128) ++|+|||.|.||..+|..+...|.+|++||.+....+ .. +.+ ++. .++++.+++ T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288) T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288) T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC Confidence 5799999999999999999999999999997655433 11 011 122 367889999 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEE-EEcCCCcccCHHHHHHHHhcCCceEEEEecc Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL-VNTSRGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l-IN~aRG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128) ||+|+.|+|...+.+..+=.+..+.+++++++ +|+|.-.+ ..+.+.++. .-...++..+ T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288) T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288) T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC Confidence 99999999988776655444566778999877 78877544 556666543 2234455555 |
|
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=98.05 E-value=1.9e-05 Score=90.68 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=81.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hcC---------Ccc-cChHhhhccCCEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------ALG---------AQL-VPLDTLCAESDFI 1014 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~g---------~~~-~~l~ell~~sDvV 1014 (1128) ++|||||.|.||..+|..+...|++|++||+...... .. +.+ ++. .++++.++.||+| T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321) T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321) T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE Confidence 6899999999999999999999999999998754322 10 011 122 3788999999999 Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) +-++|.+.+.++-+-++.-+.++++++| .++..+ +...++.+.++. T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~ 133 (321) T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH 133 (321) T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC Confidence 9999999999987778888999999944 444443 467778877754 |
|
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=98.04 E-value=1.1e-05 Score=91.20 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=67.7 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||+|+|||.| .+|+++|.+|..-|++|.+|+++.. ++.++.++||+|+++++.. +++.+. T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v~~~ 219 (301) T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLIDAD 219 (301) T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hcccHh Confidence 6899999999996 9999999999999999999976542 6889999999999999965 356654 Q ss_pred HHccCCCCcEEEEcCCCcc Q psy13054 1032 QFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l 1050 (1128) . +|+|+++|++|--.+ T Consensus 220 ~---ik~GaiVIDvgin~~ 235 (301) T PRK14194 220 W---LKPGAVVIDVGINRI 235 (301) T ss_pred h---ccCCcEEEEeccccc Confidence 4 899999999986553 |
|
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=98.03 E-value=3.8e-05 Score=90.37 Aligned_cols=91 Identities=20% Similarity=0.236 Sum_probs=70.7 Q ss_pred CCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 955 KGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 955 ~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) ..++|+||| +|.||+.+|+.|+..|..|.+||+... .+.++++++||+|++|+|... +..++. + + T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------~~~~~~~~~aDlVilavP~~~-~~~~~~-~-l 162 (374) T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------DRAEDILADAGMVIVSVPIHL-TEEVIA-R-L 162 (374) T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------hhHHHHHhcCCEEEEeCcHHH-HHHHHH-H-H Confidence 458899999 999999999999999999999985321 256788899999999999664 556663 3 4 Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHH Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128) ..+++|+++++++.-+..-.+++.+. T Consensus 163 ~~l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374) T PRK11199 163 PPLPEDCILVDLTSVKNAPLQAMLAA 188 (374) T ss_pred hCCCCCcEEEECCCccHHHHHHHHHh Confidence 44999999999987654334445444 |
|
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=98.02 E-value=1.2e-05 Score=90.17 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=86.9 Q ss_pred ccCCCeEEEEEcChh-hHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~I-G~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||.|.+ |+++|.+|...|++|.++..+. .++.+.+++||+|++++| +.++|+. T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i~~- 217 (285) T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVLTA- 217 (285) T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCccCH- Confidence 589999999999999 9999999999999998875432 268899999999999999 4578987 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) +.+|+|+++||+|--.+. +|++.| ||-.++- ..---.+||=-||.-.-+..-+.+-+ T Consensus 218 --~~ik~gavVIDVGin~~~----------~gkl~G---DVd~~~v--------~~~a~~iTPVPGGVGp~T~a~Ll~N~ 274 (285) T PRK14189 218 --DMVKPGATVIDVGMNRDD----------AGKLCG---DVDFAGV--------KEVAGYITPVPGGVGPMTITMLLVNT 274 (285) T ss_pred --HHcCCCCEEEEccccccC----------CCCeeC---CccHHHH--------HhhceEecCCCCCchHHHHHHHHHHH Confidence 678999999999976542 255544 5521111 11124588876666555544443333 Q ss_pred H Q psy13054 1112 A 1112 (1128) Q Consensus 1112 ~ 1112 (1128) + T Consensus 275 ~ 275 (285) T PRK14189 275 I 275 (285) T ss_pred H Confidence 3 |
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>PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
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Probab=98.02 E-value=3.3e-05 Score=86.29 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=76.7 Q ss_pred eEEEEEcChhhHHHHHHHhhCCC----EEEEE-eCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCH Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV----SKILY-TSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~----~Vi~~-d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) +|||||+|+||.++++.|..-|. ++++| +++..+.. ..+.|+... +..+++++||+|++++| .+..+.++. T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~- 79 (266) T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT- 79 (266) T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH- Confidence 69999999999999999988887 88888 55444333 445676554 78889999999999997 666777763 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) +....++++.++|++.-| +..+.+.+.+.. T Consensus 80 ~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266) T PLN02688 80 ELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266) T ss_pred HHHhhcCCCCEEEEecCC--CcHHHHHHHcCC Confidence 455667899999988665 466677765543 |
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>PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=98.01 E-value=2.7e-05 Score=91.16 Aligned_cols=134 Identities=25% Similarity=0.262 Sum_probs=90.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--CCc---ccChHhhhccCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--GAQ---LVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--g~~---~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ++|+|||+|.||..+|+.|+..|..|.+|+....... .... ++. ..++++++++||+|++++|. +.+..++. T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~- 78 (359) T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA- 78 (359) T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH- Confidence 4799999999999999999999998888886655433 2222 221 13678889999999999996 46677773 Q ss_pred HHHc-cCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC---------CCccccCCCeEECCCCCC Q psy13054 1031 KQFS-LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA---------DHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1031 ~~l~-~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~---------~~pL~~~pNvilTPHiag 1098 (1128) +... .+++++++.+++.-+.-..+++.+.+.. .... ++. -|++- ...|+.-...++||+-.. T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~~--ig~---HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359) T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIRF--VGG---HPMAGSHKSGVAAARADLFENAPWVLTPDDHT 150 (359) T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCeE--Eee---CCcCcCchhhHHHhcHHHHCCCcEEEecCCCC Confidence 3333 4789999999988875444444443222 1122 222 24432 234666677899997543 |
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>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
---|
Probab=97.99 E-value=6.4e-06 Score=77.40 Aligned_cols=88 Identities=18% Similarity=0.312 Sum_probs=63.7 Q ss_pred eEEEEEcChhhHHHHHHHhhCC---CEEEEE-eCCCCchh--hhhcCCccc--ChHhhhccCCEEEEecCCCcccccccC Q psy13054 958 TVGIVGLGNIGLETAKLLKAFK---VSKILY-TSRRVKEE--GTALGAQLV--PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG---~~Vi~~-d~~~~~~~--~~~~g~~~~--~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) ||||||+|+||.++++.+...| .+|.++ +++..+.. ..+.++... +..+++++||+|++++|. .....++. T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~~ 79 (96) T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVLS 79 (96) T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHHH T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHHH Confidence 6999999999999999999999 999855 65554443 345555433 789999999999999993 33344443 Q ss_pred HHHHccCCCCcEEEEcCCC Q psy13054 1030 RKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG 1048 (1128) +. ....++.++|.+.-| T Consensus 80 -~i-~~~~~~~~vis~~ag 96 (96) T PF03807_consen 80 -EI-PHLLKGKLVISIAAG 96 (96) T ss_dssp -HH-HHHHTTSEEEEESTT T ss_pred -HH-hhccCCCEEEEeCCC Confidence 22 666789999987643 |
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=97.96 E-value=4.3e-05 Score=86.15 Aligned_cols=143 Identities=27% Similarity=0.314 Sum_probs=98.2 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcCCcc---cC-hHhhhccCCEEEEecCCCccccccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALGAQL---VP-LDTLCAESDFIFVTCALTKDTEQLI 1028 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g~~~---~~-l~ell~~sDvV~l~lPlt~~T~~li 1028 (1128) -++|+|+|+|.||+.+|+.++.-|..|.+++....... +.+.|+.. .+ ..+.+..+|+|++++| -..|..++ T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-i~~~~~~l 81 (279) T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-IEATEEVL 81 (279) T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-HHHHHHHH Confidence 36899999999999999999999998866654444332 33455533 12 3678888999999999 45666666 Q ss_pred CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC--C-CCCccccCCCeEECCCCCCCcHHHHH Q psy13054 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL--P-ADHPLVQLDNCVLTPHTSSATKAVRD 1105 (1128) Q Consensus 1029 ~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl--~-~~~pL~~~pNvilTPHiag~t~e~~~ 1105 (1128) . +.-..+|+|+++.+++.-+----+++.+.+.++. ... -.=|+ | .+.+++.--.+++||.-... .+... T Consensus 82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~v-----g~HPM~G~~~~~~lf~~~~~vltp~~~~~-~~~~~ 153 (279) T COG0287 82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFV-----GGHPMFGPEADAGLFENAVVVLTPSEGTE-KEWVE 153 (279) T ss_pred H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeE-----ecCCCCCCcccccccCCCEEEEcCCCCCC-HHHHH Confidence 3 3444799999999999888766666666664432 221 22343 1 25577777889999985544 34443 Q ss_pred HH Q psy13054 1106 EK 1107 (1128) Q Consensus 1106 ~~ 1107 (1128) ++ T Consensus 154 ~~ 155 (279) T COG0287 154 EV 155 (279) T ss_pred HH Confidence 33 |
|
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=97.95 E-value=7.4e-05 Score=84.71 Aligned_cols=139 Identities=13% Similarity=0.109 Sum_probs=92.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-------------------------cCCcc-cChHhhhc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-------------------------LGAQL-VPLDTLCA 1009 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-------------------------~g~~~-~~l~ell~ 1009 (1128) ++|+|||.|.+|..+|..+...|.+|++||......+ ..+ ..++. .++++.++ T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287) T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287) T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc Confidence 5799999999999999999989999999997654322 110 01122 36888899 Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCC Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 1089 (1128) Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pN 1089 (1128) .||+|+.++|...+.+.-+=++.-+.++++++++..+.+ .....+.+.++... ...++-. .+|.+..|. T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~~-r~vg~Hf--------~~p~~~~~l 152 (287) T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRPE-KFLALHF--------ANEIWKNNT 152 (287) T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCcc-cEEEEcC--------CCCCCcCCe Confidence 999999999977655444334566678899988543333 34456777665322 3333322 234567788 Q ss_pred eEECCCCCCCcHHHHHHH Q psy13054 1090 CVLTPHTSSATKAVRDEK 1107 (1128) Q Consensus 1090 vilTPHiag~t~e~~~~~ 1107 (1128) |.+.|+-.. ++++.+.+ T Consensus 153 vevv~~~~t-~~~~~~~~ 169 (287) T PRK08293 153 AEIMGHPGT-DPEVFDTV 169 (287) T ss_pred EEEeCCCCC-CHHHHHHH Confidence 888887553 44444433 |
|
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
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Probab=97.94 E-value=4.8e-05 Score=77.62 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=78.6 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcCC-----cccChHhhhccCCEEEEecCCCcc-c Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALGA-----QLVPLDTLCAESDFIFVTCALTKD-T 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g~-----~~~~l~ell~~sDvV~l~lPlt~~-T 1024 (1128) +.+++++|+|.|.||+.+++.+...| .+|.++|++..+.. ....+. ...+++++++++|+|++++|.... . T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~ 96 (155) T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPG 96 (155) T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCC Confidence 56889999999999999999999886 78889987655433 223232 334778889999999999997654 2 Q ss_pred cc-ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc Q psy13054 1025 EQ-LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1025 ~~-li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128) .. .+... .++++.++++++..... + .+.+.+++..+ T Consensus 97 ~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~ 133 (155) T cd01065 97 DELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALGA 133 (155) T ss_pred CCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCCC Confidence 22 23432 36899999999877544 3 77777776544 |
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
>PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=97.94 E-value=1.7e-05 Score=89.19 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=77.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhh--CCCEEE-EEeCCCCchh--hhhcCC--cccChHhhhccCCEEEEecCCCcccccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA--FKVSKI-LYTSRRVKEE--GTALGA--QLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a--fG~~Vi-~~d~~~~~~~--~~~~g~--~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) ...+|||||+|.||+.+++.+.. .++++. ++|+...+.. ....+. .+.++++++.++|+|++|+|.. ++.- T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~--~h~e 82 (271) T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS--VLRA 82 (271) T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH--HHHH Confidence 45789999999999999999975 588876 4554443332 233443 2458999999999999999943 2222 Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ 1066 (1128) + ..+.++.|.-++..+.|.+.+.++|.++.+++... T Consensus 83 ~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271) T PRK13302 83 I---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271) T ss_pred H---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE Confidence 2 23445667777788999998999999988876543 |
|
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
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Probab=97.92 E-value=6.4e-05 Score=89.53 Aligned_cols=134 Identities=19% Similarity=0.173 Sum_probs=89.0 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhh--------------------cC-Ccc-cChHhhhccCCEEE Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTA--------------------LG-AQL-VPLDTLCAESDFIF 1015 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~--------------------~g-~~~-~~l~ell~~sDvV~ 1015 (1128) +|||||+|.+|..+|..|...|.+|++||.+..+..... .| ++. .++++++++||+|+ T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411) T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411) T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE Confidence 699999999999999999999999999997765433111 12 232 26788899999999 Q ss_pred EecCCCccc------ccccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHH-Hhc--CCceEEEEec---cCCCCCCCC Q psy13054 1016 VTCALTKDT------EQLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEF-LKD--KKIGGAGLDV---MIPEPLPAD 1081 (1128) Q Consensus 1016 l~lPlt~~T------~~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~a-L~~--g~i~gaaLDV---~e~EPl~~~ 1081 (1128) +++|..... ..+.. ....+.+++|.++|+.|.-.+=..+.+... +++ |.-. +.|. +-+|...+. T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~--~~d~~v~~~Pe~~~~G 159 (411) T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKL--GEDFYLAYNPEFLREG 159 (411) T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCC--CCCceEEECCCcCCCC Confidence 999965431 11221 345567899999999987666666677644 444 2111 2332 345554443 Q ss_pred C---ccccCCCeEEC Q psy13054 1082 H---PLVQLDNCVLT 1093 (1128) Q Consensus 1082 ~---pL~~~pNvilT 1093 (1128) . .++..+.+++. T Consensus 160 ~~~~~~~~~~~iv~G 174 (411) T TIGR03026 160 NAVHDLLNPDRIVGG 174 (411) T ss_pred ChhhhhcCCCEEEEe Confidence 3 34555677765 |
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=97.90 E-value=7e-05 Score=85.04 Aligned_cols=138 Identities=21% Similarity=0.228 Sum_probs=88.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh-hh-----------cC-------------Cccc-ChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG-TA-----------LG-------------AQLV-PLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~-~~-----------~g-------------~~~~-~l~ell~~ 1010 (1128) ++|+|||.|.||..+|..+...|.+|++||.+....+. .+ .+ ++.. +++ .+++ T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292) T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292) T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC Confidence 67999999999999999999999999999976543321 10 12 2222 454 5789 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEE-EcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILV-NTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 1089 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pN 1089 (1128) ||+|+.++|..++.+..+=++..+.++++++++ |+|.-. ...+.+.+... -...++-.+. |.+ -. +- T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~--p~~-~~-----~~ 151 (292) T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN--PVP-VM-----KL 151 (292) T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC--Ccc-cC-----ce Confidence 999999999887755544356677889999998 666544 34677766431 1233444454 322 12 22 Q ss_pred eEECCCCCCCcHHHHHHHH Q psy13054 1090 CVLTPHTSSATKAVRDEKS 1108 (1128) Q Consensus 1090 vilTPHiag~t~e~~~~~~ 1108 (1128) +-+.|+.+ .+.+..++.. T Consensus 152 vei~~g~~-t~~~~~~~~~ 169 (292) T PRK07530 152 VELIRGIA-TDEATFEAAK 169 (292) T ss_pred EEEeCCCC-CCHHHHHHHH Confidence 44566643 3445444433 |
|
>PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
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Probab=97.90 E-value=6.7e-05 Score=84.51 Aligned_cols=97 Identities=20% Similarity=0.366 Sum_probs=68.9 Q ss_pred eEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh-hhhcCCc--ccChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE-GTALGAQ--LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~-~~~~g~~--~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) +|||||+|.||+.+|+.|+..|. +|++||++..... ..+.|+. ..+.+++. ++|+|++++|.. .+..++. +. T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~~-~l 78 (275) T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEILP-KL 78 (275) T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHHH-HH Confidence 69999999999999999987774 7888887655433 3445542 23677765 599999999954 4444553 44 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) .. +++++++++++.- ...+.+.+.. T Consensus 79 ~~-l~~~~iv~d~gs~----k~~i~~~~~~ 103 (275) T PRK08507 79 LD-IKENTTIIDLGST----KAKIIESVPK 103 (275) T ss_pred hc-cCCCCEEEECccc----hHHHHHHHHH Confidence 55 8999999997552 3445555544 |
|
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
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Probab=97.89 E-value=4.1e-05 Score=80.11 Aligned_cols=89 Identities=25% Similarity=0.344 Sum_probs=74.6 Q ss_pred ccCCCeEEEEEcChh-hHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~I-G~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .+.||++.|||.|.+ |+.+|+.|...|++|.+.+++. .++.+.++++|+|+.+.+.. ++|+++ T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~~ 104 (168) T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKGD 104 (168) T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecHH Confidence 589999999999986 9999999999999988887542 25778999999999998854 378887 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) . ++++.++|++|...-+| ..++++.| T Consensus 105 ~---~~~~~viIDla~prdvd-------~~~~~~~G 130 (168) T cd01080 105 M---VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168) T ss_pred H---ccCCeEEEEccCCCccc-------ccCCCeeC Confidence 5 57899999999999888 56666655 |
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
>PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=97.84 E-value=0.00011 Score=85.89 Aligned_cols=122 Identities=19% Similarity=0.240 Sum_probs=83.5 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhh-CCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCH-- Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKA-FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR-- 1030 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~-- 1030 (1128) .-.||+|||+ |.||+.+|+.++. +|.+|++||+... ...++++.+++||+|++|+|- ..+..++.+ T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv-~~~~~~l~~l~ 72 (370) T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPI-RHTAALIEEYV 72 (370) T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHHHHh Confidence 4578999999 9999999999985 5999999986311 123678889999999999993 455555532 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC--CCCCccccCCCeEECCC Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL--PADHPLVQLDNCVLTPH 1095 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl--~~~~pL~~~pNvilTPH 1095 (1128) .....+|+++++.+++.-+---.+++ ++.+ . ++.-.=|+ |+.+.++.-.++++||. T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~---~~~~-~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370) T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAM---LASQ-A-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370) T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHH---HhcC-C-----CEEeeCCCCCCCCCcccCCCeEEEeCC Confidence 11234799999999998773222222 2211 1 22223354 33456777778999997 |
|
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=97.84 E-value=4.2e-05 Score=86.60 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=66.9 Q ss_pred ccCCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||+|+||| .|.+|+++|.+|..-|+.|.+|+.+.. ++++++++||+|+++++..+ ++.+. T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v~~~ 218 (296) T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MVKGD 218 (296) T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hcchh Confidence 58999999999 999999999999999999999965442 47899999999999999654 45543 Q ss_pred HHccCCCCcEEEEcCCCcc Q psy13054 1032 QFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l 1050 (1128) . +|+|+++|++|--.+ T Consensus 219 ~---lk~GavVIDvGin~~ 234 (296) T PRK14188 219 W---IKPGATVIDVGINRI 234 (296) T ss_pred e---ecCCCEEEEcCCccc Confidence 3 899999999986553 |
|
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
---|
Probab=97.82 E-value=8e-05 Score=95.15 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=93.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchh-hhhcCCc---ccChHhhhccCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEE-GTALGAQ---LVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~-~~~~g~~---~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ++|||||+|.||..+++.++..| .+|++||++..+.. +.+.|+. ..+++++++++|+|++++|.. .+..++. T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl~- 81 (735) T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVLA- 81 (735) T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHHH- Confidence 68999999999999999999888 58999987765543 4445553 346888899999999999953 4444442 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC---------CCCCccccCCCeEECCCCCC Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL---------PADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl---------~~~~pL~~~pNvilTPHiag 1098 (1128) +.-..++++.++++++.-+....+++.+.+....+ .+.-+=|. ..+..|+.-.++++||+... T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~-----r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735) T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPA-----GFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735) T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCC-----eEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC Confidence 33445688999999988664445556555543222 22223332 12346778888999997654 |
|
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=97.79 E-value=0.00017 Score=81.52 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=75.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh------------hhhcC-------------Cccc-ChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE------------GTALG-------------AQLV-PLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~------------~~~~g-------------~~~~-~l~ell~~ 1010 (1128) ++|+|||.|.||..+|..+...|.+|++||.+....+ ..+.| ++.. +.+ .+++ T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282) T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282) T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc Confidence 5799999999999999999999999999997665431 11122 1222 444 4799 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ||+|+.++|...+.+.-+=++.-+.++++++++....| +....|.+.++. T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282) T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282) T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC Confidence 99999999987776644434566678999999555444 666688888854 |
|
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
---|
Probab=97.79 E-value=0.00017 Score=87.11 Aligned_cols=94 Identities=20% Similarity=0.294 Sum_probs=74.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--C-------------------------- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--P-------------------------- 1003 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--~-------------------------- 1003 (1128) ...+.++.|+|+|.+|...++.++++|++|+++|.+..+.+ ++..|.+.+ + T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~ 240 (511) T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL 240 (511) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH Confidence 45678999999999999999999999999999998876554 445555431 1 Q ss_pred hHhhhccCCEEEEec--CCCcccccccCHHHHccCCCCcEEEEcCC Q psy13054 1004 LDTLCAESDFIFVTC--ALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1004 l~ell~~sDvV~l~l--Plt~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) +.+.++++|+|+.++ |..+ .-.++.++.++.||+|+++|++|- T Consensus 241 ~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511) T TIGR00561 241 FAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511) T ss_pred HHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee Confidence 445678899998877 3322 236899999999999999999964 |
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
---|
Probab=97.78 E-value=2.4e-05 Score=78.85 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=70.9 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh--hhhc---CCccc---ChHhhhccCCEEEEecCCCcc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE--GTAL---GAQLV---PLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~--~~~~---g~~~~---~l~ell~~sDvV~l~lPlt~~ 1023 (1128) ++.|+++.|||.|.+|+.++..|...|++ +.+++++..+.. .... .+... ++.+.+.++|+|+.+.|.... T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135) T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135) T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc Confidence 68999999999999999999999999997 888887666544 2333 22233 566678999999999996544 Q ss_pred cccccCHHHHccCCCCc-EEEEcCCCcccC Q psy13054 1024 TEQLIGRKQFSLMKPTA-ILVNTSRGGLLD 1052 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga-~lIN~aRG~lVd 1052 (1128) .+.++.++..++.. +++++|...-|| T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~ 115 (135) T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDID 115 (135) T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB- T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCCC Confidence 78888888776543 777776554443 |
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=97.77 E-value=8.3e-05 Score=85.84 Aligned_cols=100 Identities=20% Similarity=0.169 Sum_probs=75.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--------C------Ccc-cChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--------G------AQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--------g------~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) .+|+|||+|.||..+|..|...|.+|.+|+++.++.+ .... + +.. .+++++++.+|+|++++|. T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328) T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328) T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch Confidence 5799999999999999999999999999987655433 2211 2 222 3788889999999999996 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCC-cccC--HHHHHHHHhc Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRG-GLLD--QEALVEFLKD 1062 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG-~lVd--e~aL~~aL~~ 1062 (1128) . .+ ++.++.++++.++|+++.| ..-+ .+.+.+.+.+ T Consensus 85 ~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328) T PRK14618 85 K-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328) T ss_pred H-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH Confidence 6 22 5667889999999999998 3332 4566666654 |
|
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=97.76 E-value=0.00014 Score=85.90 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=87.6 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh----------------cCCcc-c--ChHhhhccCCEEEEe Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA----------------LGAQL-V--PLDTLCAESDFIFVT 1017 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~----------------~g~~~-~--~l~ell~~sDvV~l~ 1017 (1128) +|+|||+|.+|..+|..+. .|.+|++||....+.+ ..+ .+.+. . +..++.+.||+|++| T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388) T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388) T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe Confidence 6999999999999997665 5999999998776544 111 11222 2 356778999999999 Q ss_pred cCCCccc-ccccCH-------HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccc---c Q psy13054 1018 CALTKDT-EQLIGR-------KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLV---Q 1086 (1128) Q Consensus 1018 lPlt~~T-~~li~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~---~ 1086 (1128) +|...+- .+.+|- +.+..+++|.++|+.|.-.+=..+.+.+.+.+..+ +|.+|.+.+.+.+. . T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~~ 154 (388) T PRK15057 81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNLH 154 (388) T ss_pred CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccccC Confidence 9965221 112221 22334799999999999999889999988765322 25788776655444 3 Q ss_pred CCCeEE Q psy13054 1087 LDNCVL 1092 (1128) Q Consensus 1087 ~pNvil 1092 (1128) .|.|++ T Consensus 155 p~rvv~ 160 (388) T PRK15057 155 PSRIVI 160 (388) T ss_pred CCEEEE Confidence 444443 |
|
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=97.75 E-value=8.6e-05 Score=83.48 Aligned_cols=126 Identities=18% Similarity=0.232 Sum_probs=88.0 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||+++|||. |.+|+++|.+|...|++|.+|.++. .++.+..++||+|+++++.. +++..+ T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v~~~ 218 (284) T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFVTKE 218 (284) T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccCCHH Confidence 589999999999 9999999999999999999984322 16889999999999999965 356654 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) . +|+|+++|++|--.+. +|++-| ||-.++- .. ---.+||==||.-.-+..-+.+-+ T Consensus 219 ~---ik~GavVIDvgin~~~----------~gkl~G---DVdf~~v-------~~-~a~~iTPVPGGVGp~T~a~L~~N~ 274 (284) T PRK14179 219 F---VKEGAVVIDVGMNRDE----------NGKLIG---DVDFDEV-------AE-VASYITPVPGGVGPMTITMLMEQT 274 (284) T ss_pred H---ccCCcEEEEecceecC----------CCCeec---CccHHHH-------Hh-hccEecCCCCCchHHHHHHHHHHH Confidence 3 8999999999855532 355544 4432211 11 113588887776655554444444 Q ss_pred HHHHHHH Q psy13054 1112 AENIIRG 1118 (1128) Q Consensus 1112 ~~nl~~~ 1118 (1128) ++-.+++ T Consensus 275 ~~a~~~~ 281 (284) T PRK14179 275 YQAALRS 281 (284) T ss_pred HHHHHHH Confidence 4444433 |
|
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=97.70 E-value=0.00027 Score=80.29 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=79.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh--------------cCC-------------ccc-ChHhh Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA--------------LGA-------------QLV-PLDTL 1007 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~--------------~g~-------------~~~-~l~el 1007 (1128) ++|+|||.|.||..+|..+...|++|++||.+....+ ..+ .+. ... ++ +. T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291) T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291) T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH Confidence 6899999999999999999999999999997665432 100 011 112 34 56 Q ss_pred hccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 1008 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 1008 l~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) +++||+|+.++|...+.+.-+=++.-+.++++++|+++..| +....+.+.+... -...++..|.+ T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P 147 (291) T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNP 147 (291) T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCC Confidence 78999999999977654443333445567899999987776 4567777777542 23444555544 |
|
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
---|
Probab=97.69 E-value=5.6e-05 Score=85.15 Aligned_cols=101 Identities=13% Similarity=0.212 Sum_probs=76.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC----EEEEEeCCCCchh-hh-hcCCccc-ChHhhhccCCEEEEecCCCcccccccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV----SKILYTSRRVKEE-GT-ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~----~Vi~~d~~~~~~~-~~-~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) ++|||||+|+||.++++.|..-|. +|+++|+...+.+ .. ..|+... +..+++++||+|++++| ......++. T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~ 81 (272) T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVIN 81 (272) T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHH Confidence 479999999999999999987664 6888887655443 22 3566544 68889999999999999 466766663 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHh Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128) +.-..++++.++|.+.=| ++.+.|.+.|. T Consensus 82 -~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272) T PRK12491 82 -QIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272) T ss_pred -HHHHhhcCCcEEEEeCCC--CcHHHHHHhcC Confidence 344456789999999877 56666776664 |
|
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
---|
Probab=97.66 E-value=0.0001 Score=83.28 Aligned_cols=104 Identities=11% Similarity=0.184 Sum_probs=75.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCch-h--hhhcCCccc-ChHhhhccCCEEEEecCCCccccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKE-E--GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~-~--~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .+.+|||||+|+||.++++.|..-| .+|++++++.++. . ....+++.. +..+++++||+|++++| ++.... T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~ 80 (279) T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAE 80 (279) T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHH Confidence 3568999999999999999998877 6788887654322 2 233466543 77889999999999999 444555 Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ++ .+....++++.++|++.-| +..+.+.+.+.. T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279) T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279) T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC Confidence 55 3444556889999998655 356666666543 |
|
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=97.64 E-value=0.00014 Score=81.87 Aligned_cols=78 Identities=19% Similarity=0.332 Sum_probs=67.5 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||.|. +|+.+|..|...|++|.+++++. .++.+.+++||+|+.+++.. ++|.++ T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~p----~~i~~~ 218 (286) T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGKP----GLVTKD 218 (286) T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCCC----cccCHH Confidence 58999999999998 99999999999999999987543 25889999999999999853 478876 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) . +|+|+++|++|--. T Consensus 219 ~---vk~gavVIDvGi~~ 233 (286) T PRK14175 219 V---VKEGAVIIDVGNTP 233 (286) T ss_pred H---cCCCcEEEEcCCCc Confidence 4 68999999998654 |
|
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=97.61 E-value=0.00026 Score=86.44 Aligned_cols=116 Identities=27% Similarity=0.352 Sum_probs=84.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh------------hhcC-------------Cccc-ChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG------------TALG-------------AQLV-PLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~------------~~~g-------------~~~~-~l~ell~~ 1010 (1128) ++|||||+|.||..+|..+...|.+|++||......+. .+.| ++.. ++++ ++. T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507) T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507) T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC Confidence 67999999999999999999999999999977654331 2223 2322 5655 569 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEE-EEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL-VNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l-IN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP 1077 (1128) ||+|+-++|.+.+.+..+=++.-+.++++++| .|||.-.+ ..+..+++.- =...++..|.+-| T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~p-~r~~G~hff~Pa~ 150 (507) T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKHP-ERVAGLHFFNPVP 150 (507) T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCc-ccEEEEeecCCcc Confidence 99999999999998887655555556899999 59987776 3676666532 2345667776544 |
|
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
---|
Probab=97.59 E-value=0.00017 Score=81.53 Aligned_cols=91 Identities=15% Similarity=0.098 Sum_probs=74.3 Q ss_pred hHHHHHHHhhCCCEEEEEeCCCCch------hhhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCc Q psy13054 968 GLETAKLLKAFKVSKILYTSRRVKE------EGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 1040 (1128) Q Consensus 968 G~~vA~~l~afG~~Vi~~d~~~~~~------~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga 1040 (1128) |+++|++|...|..|++||++.... ...+.|+..+ +..+++++||+|++|+|..+.++.++ ...++.+++|+ T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341) T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341) T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC Confidence 8999999999999999998765421 1455677765 68899999999999999888898888 56899999999 Q ss_pred EEEEcCCCcccCHHHHHHHHhc Q psy13054 1041 ILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1041 ~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ++||++.. +.+.+++.|+. T Consensus 111 IVID~STI---sP~t~~~~~e~ 129 (341) T TIGR01724 111 VICNTCTV---SPVVLYYSLEK 129 (341) T ss_pred EEEECCCC---CHHHHHHHHHH Confidence 99999764 56666666655 |
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=97.59 E-value=0.00057 Score=78.33 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=84.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-----------hhcCC-------------cc-cChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-----------TALGA-------------QL-VPLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-----------~~~g~-------------~~-~~l~ell~~ 1010 (1128) ++|+|||.|.||..+|..+...|.+|++||+.....+ . .+.|. .. .++.++++. T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308) T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308) T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC Confidence 4799999999999999999999999999997754322 1 12231 22 378889999 Q ss_pred CCEEEEecCCCcccccccCHHHHcc-CCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSL-MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 1089 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~-mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pN 1089 (1128) +|+|+.++|...+.+..+=.+ ++. .+++.++..... ......+.+.+.... ..+ .|-+-+ | -+..|= T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts--~~~~~~la~~~~~~~-~~~-~~hp~~-p------~~~~~l 150 (308) T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTS--ALLASAFTEHLAGRE-RCL-VAHPIN-P------PYLIPV 150 (308) T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCC--CCCHHHHHHhcCCcc-cEE-EEecCC-C------cccCce Confidence 999999999775544333222 444 455555543333 345667887775432 222 343332 2 111233 Q ss_pred eEECCCCCCCcHHHHHH Q psy13054 1090 CVLTPHTSSATKAVRDE 1106 (1128) Q Consensus 1090 vilTPHiag~t~e~~~~ 1106 (1128) +.++||-++ +++..++ T Consensus 151 veiv~~~~t-~~~~~~~ 166 (308) T PRK06129 151 VEVVPAPWT-APATLAR 166 (308) T ss_pred EEEeCCCCC-CHHHHHH Confidence 668887543 3444443 |
|
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
---|
Probab=97.58 E-value=3.7e-05 Score=83.43 Aligned_cols=129 Identities=12% Similarity=0.167 Sum_probs=91.8 Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHH--HhhCCCEEEEEeCC Q psy13054 911 TVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKL--LKAFKVSKILYTSR 988 (1128) Q Consensus 911 sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~--l~afG~~Vi~~d~~ 988 (1128) +.++|.++.++...|++. .|. ..++++|||+|.+|+.+++. ....|++++++-+. T Consensus 62 ~~~gy~v~~l~~~~~~~l---------~~~--------------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~ 118 (213) T PRK05472 62 RGVGYNVEELLEFIEKIL---------GLD--------------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDV 118 (213) T ss_pred CCCCeeHHHHHHHHHHHh---------CCC--------------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEEC Confidence 444688888888887665 222 23579999999999999986 34678988875433 Q ss_pred CCchhh-hhcCC---cccChHhhhcc--CCEEEEecCCCcc---cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHH Q psy13054 989 RVKEEG-TALGA---QLVPLDTLCAE--SDFIFVTCALTKD---TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128) Q Consensus 989 ~~~~~~-~~~g~---~~~~l~ell~~--sDvV~l~lPlt~~---T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128) .+.... ...++ ...++++++++ .|+|++++|.... ...+.......-|...++.+|+.+|.+|+.++|..+ T Consensus 119 d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~ 198 (213) T PRK05472 119 DPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVE 198 (213) T ss_pred ChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHH Confidence 222111 11122 12367888765 9999999997765 334445555667788899999999999999999999 Q ss_pred Hhc Q psy13054 1060 LKD 1062 (1128) Q Consensus 1060 L~~ 1062 (1128) |.. T Consensus 199 l~~ 201 (213) T PRK05472 199 LQT 201 (213) T ss_pred HHH Confidence 874 |
|
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
---|
Probab=97.57 E-value=0.00041 Score=84.70 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=75.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-------------------hcC-Cccc-ChHhhhccCCEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-------------------ALG-AQLV-PLDTLCAESDFI 1014 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-------------------~~g-~~~~-~l~ell~~sDvV 1014 (1128) ++|||||.|.||..+|..+...|.+|.+||+.....+ .. ..+ ++.+ ++++++++||+| T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495) T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495) T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE Confidence 5799999999999999999999999999998765432 11 012 3333 788999999999 Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) +.++|...+.+..+=++.-+.+++++++ .++..++ +...+.+.+.. T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495) T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495) T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC Confidence 9999988776664333444567778754 4444443 35577777754 |
|
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=97.57 E-value=0.00021 Score=81.04 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=80.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh------------hhcCC-------------cc-cChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG------------TALGA-------------QL-VPLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~------------~~~g~-------------~~-~~l~ell~~ 1010 (1128) ++|||||.|.||..+|..+...|.+|++||......+. .+.|. +. .++ +.++. T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286) T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286) T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC Confidence 48999999999999999999999999999987664321 11221 12 256 55799 Q ss_pred CCEEEEecCCCcccccccCHHHHccC-CCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLM-KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~m-k~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) ||+|+-++|.+.+.+.-+=++.-+.+ +++++|++.+.+-.+. ++..+++.. =...++..|.+ T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~--~la~~~~~~-~r~~g~hf~~P 147 (286) T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM--KLAAATKRP-GRVLGLHFFNP 147 (286) T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCC-ccEEEEecCCC Confidence 99999999999998876654333444 8999998887765544 444444322 22445566654 |
|
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=97.57 E-value=0.00011 Score=84.16 Aligned_cols=93 Identities=18% Similarity=0.227 Sum_probs=70.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--------------CCcc-cChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--------------GAQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--------------g~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) ++|+|||+|.||..+|..|...|.+|.+|++.....+ .... +... .+++++++.+|+|++++|. T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325) T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325) T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH Confidence 3799999999999999999999999999987654433 2222 2222 3677889999999999995 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCccc Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~lV 1051 (1128) +.+..++. .....++++.++|+++.|--. T Consensus 82 -~~~~~v~~-~l~~~~~~~~~vi~~~ngv~~ 110 (325) T PRK00094 82 -QALREVLK-QLKPLLPPDAPIVWATKGIEP 110 (325) T ss_pred -HHHHHHHH-HHHhhcCCCCEEEEEeecccC Confidence 56666663 455667899999999866544 |
|
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
---|
Probab=97.56 E-value=0.00026 Score=76.25 Aligned_cols=115 Identities=21% Similarity=0.274 Sum_probs=96.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhh---hccCCEEEEecCCCcccccccCHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTL---CAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~el---l~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) +++|.||+|+||..++++|..-|.+|++||.+....+ ....+++.+ +++|+ |...-+|-+++|...-|..+|+ + T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~ 79 (300) T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D 79 (300) T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H Confidence 4689999999999999999999999999997776554 555666544 66765 5668999999999988888885 6 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128) .-..|.+|-++|+-+...--|.....+.|++..|.. +||=. T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~f--lD~GT 120 (300) T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHF--LDVGT 120 (300) T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeE--EeccC Confidence 778889999999999999889998999999998865 68743 |
|
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=97.53 E-value=0.00059 Score=78.16 Aligned_cols=109 Identities=17% Similarity=0.315 Sum_probs=73.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-----cC--------------Ccc-cChHhhhccCCEEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-----LG--------------AQL-VPLDTLCAESDFIF 1015 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-----~g--------------~~~-~~l~ell~~sDvV~ 1015 (1128) ++|||||.|.||..+|..+...|.+|++||++....+ ..+ .+ ++. .++++++++||+|+ T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311) T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311) T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE Confidence 5799999999999999999999999999997654432 111 11 122 36778899999999 Q ss_pred EecCCCcc-cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc-CCceEE Q psy13054 1016 VTCALTKD-TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD-KKIGGA 1068 (1128) Q Consensus 1016 l~lPlt~~-T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~-g~i~ga 1068 (1128) +++|...+ ...++. +.-...+++++++...-| +....+.+.+.. .++.++ T Consensus 85 ~av~~~~~~~~~v~~-~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~~~~~ig~ 136 (311) T PRK06130 85 EAVPEKLELKRDVFA-RLDGLCDPDTIFATNTSG--LPITAIAQAVTRPERFVGT 136 (311) T ss_pred EeccCcHHHHHHHHH-HHHHhCCCCcEEEECCCC--CCHHHHHhhcCCcccEEEE Confidence 99997654 334443 333345777777544333 345677777753 333343 |
|
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
---|
Probab=97.52 E-value=0.0003 Score=85.74 Aligned_cols=116 Identities=21% Similarity=0.254 Sum_probs=84.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-----------hhcC-------------Ccc-cChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-----------TALG-------------AQL-VPLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-----------~~~g-------------~~~-~~l~ell~~ 1010 (1128) ++|||||.|.||+.+|..+...|++|++||......+ . .+.| ++. .++++ ++. T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503) T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503) T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC Confidence 5799999999999999999999999999997755432 1 1122 122 25655 469 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEE-EcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILV-NTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP 1077 (1128) ||+|+.++|...+.+..+=.+.-+.++++++|. |||.-.+ ..+.++++. +-...++..|.+-| T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap 148 (503) T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP 148 (503) T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc Confidence 999999999998888765555556678888877 7766554 467777753 34566777777655 |
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=97.46 E-value=0.0002 Score=79.78 Aligned_cols=89 Identities=18% Similarity=0.236 Sum_probs=73.0 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCCCcccccccCH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) -|.||||+|||||.=|++=|..|+--|.+|++--+...... +.+.|++..+.+|+.++||+|.+.+|...+ ..++.. T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q-~~vy~~ 93 (338) T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQ-KEVYEK 93 (338) T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhH-HHHHHH Confidence 58999999999999999999999999999877654444422 667899988999999999999999995543 346666 Q ss_pred HHHccCCCCcEE Q psy13054 1031 KQFSLMKPTAIL 1042 (1128) Q Consensus 1031 ~~l~~mk~ga~l 1042 (1128) +.-..||+|+.| T Consensus 94 ~I~p~Lk~G~aL 105 (338) T COG0059 94 EIAPNLKEGAAL 105 (338) T ss_pred HhhhhhcCCceE Confidence 777788888855 |
|
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
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Probab=97.45 E-value=0.00016 Score=72.14 Aligned_cols=90 Identities=20% Similarity=0.357 Sum_probs=56.4 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhh-c-CCcccChHhhhccCCEEEEecCCCcccccccCH Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTA-L-GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~-~-g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ...+|||||.|++|..+++.|+..|..|..+..+..... +.. . .....+++|+++++|++++++|.. ....+. + T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va-~ 86 (127) T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA-E 86 (127) T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-H T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-H Confidence 346899999999999999999999999998876655332 211 2 223458899999999999999966 333332 2 Q ss_pred HHHcc--CCCCcEEEEcC Q psy13054 1031 KQFSL--MKPTAILVNTS 1046 (1128) Q Consensus 1031 ~~l~~--mk~ga~lIN~a 1046 (1128) +.-.. .++|.+++=+| T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127) T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127) T ss_dssp HHHCC--S-TT-EEEES- T ss_pred HHHHhccCCCCcEEEECC Confidence 33333 58899999884 |
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
>TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
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Probab=97.44 E-value=0.00023 Score=85.04 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=72.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcCCcc---cChHhhhccCCEEEEecCCCccccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALGAQL---VPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g~~~---~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .+.|++++|||+|.||+.+++.|...| .+|+++++...+.. +...+... .++.+.+.++|+|+.+++ .+.. T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~ 253 (417) T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP 253 (417) T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc Confidence 478999999999999999999999999 68889987665543 33334322 356788899999999865 4456 Q ss_pred ccCHHHHccCC----CCcEEEEcCCCcccCH Q psy13054 1027 LIGRKQFSLMK----PTAILVNTSRGGLLDQ 1053 (1128) Q Consensus 1027 li~~~~l~~mk----~ga~lIN~aRG~lVde 1053 (1128) +++++.++.+. ...++|+.+...=||. T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417) T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417) T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh Confidence 78888887752 2358888876544443 |
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=97.41 E-value=0.0006 Score=76.75 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=86.3 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||.|. +|+++|.+|...|++|.+++++. .++.+.+++||+|+.+++-. +++.. T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~p----~~v~~- 218 (285) T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGKP----GFIPG- 218 (285) T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCCc----ccccH- Confidence 58999999999999 99999999999999999987543 25889999999999999533 46776 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) +.+|+|+++|++|--.+- +|++.| ||-..+ .... --.+||=-||...-+..-+.+-+ T Consensus 219 --~~vk~gavVIDvGin~~~----------~gk~~G---Dvd~~~-------~~~~-a~~itPvPGGVGp~T~a~L~~N~ 275 (285) T PRK10792 219 --EWIKPGAIVIDVGINRLE----------DGKLVG---DVEFET-------AAER-ASWITPVPGGVGPMTVATLLENT 275 (285) T ss_pred --HHcCCCcEEEEccccccc----------CCCcCC---CcCHHH-------HHhh-ccCcCCCCCCChHHHHHHHHHHH Confidence 556899999999844321 233322 221000 0111 23478877777766665555544 Q ss_pred HHHHHH Q psy13054 1112 AENIIR 1117 (1128) Q Consensus 1112 ~~nl~~ 1117 (1128) ++-.++ T Consensus 276 ~~a~~~ 281 (285) T PRK10792 276 LQACEE 281 (285) T ss_pred HHHHHH Confidence 444333 |
|
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
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Probab=97.40 E-value=0.00026 Score=78.96 Aligned_cols=100 Identities=15% Similarity=0.262 Sum_probs=72.4 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCE---EEEEeCCCCchh-h-hhc-CCcc-cChHhhhccCCEEEEecCCCcccccccCH Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVS---KILYTSRRVKEE-G-TAL-GAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~---Vi~~d~~~~~~~-~-~~~-g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) +|||||+|+||+.+++.|...|.. +.++++...+.. . ... ++.. .+.+++++++|+|++++| .+....++.. T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258) T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258) T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH Confidence 699999999999999999877743 456765544333 2 223 3444 378889999999999999 4555555532 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) + .++++.++|.++ .-+..+.|.+.++.+ T Consensus 81 --l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258) T PRK06476 81 --L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258) T ss_pred --h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC Confidence 3 357899999987 447888888887653 |
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>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
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Probab=97.39 E-value=0.001 Score=79.35 Aligned_cols=90 Identities=22% Similarity=0.247 Sum_probs=64.5 Q ss_pred ccCCCeEEEEEc----------ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCc Q psy13054 953 GLKGATVGIVGL----------GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 953 ~L~gktvGIIG~----------G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~ 1022 (1128) .+.|++|+|+|+ ..-...+++.|...|.+|.+|||..........+ ...++++.++.+|+|+++.+-.+ T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~~ 388 (411) T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHDE 388 (411) T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCHH Confidence 479999999998 3467899999999999999999986554322211 13588899999999999988543 Q ss_pred ccccccCHHHHccCCCCcEEEEc Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) -+. ++-+.++.+-...++|++ T Consensus 389 -~~~-~~~~~~~~~~~~~~v~D~ 409 (411) T TIGR03026 389 -FKD-LDLEKIKDLMKGKVVVDT 409 (411) T ss_pred -Hhc-cCHHHHHHhcCCCEEEeC Confidence 232 355555543334577764 |
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
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Probab=97.36 E-value=0.00043 Score=74.17 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=67.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcC--CcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALG--AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g--~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++++|+|.|+||..+|+++...|.+|++-.++.++.. .+..+ ++..+.++..+.+|||++.+|...- ..+ -++ T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~v-~~~ 79 (211) T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PDV-LAE 79 (211) T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-HhH-HHH Confidence 5799999999999999999999999998877777644 22233 3345889999999999999996532 222 244 Q ss_pred HHccCCCCcEEEEcCCC Q psy13054 1032 QFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG 1048 (1128) ...... |.++|++.-. T Consensus 80 l~~~~~-~KIvID~tnp 95 (211) T COG2085 80 LRDALG-GKIVIDATNP 95 (211) T ss_pred HHHHhC-CeEEEecCCC Confidence 444455 8899988664 |
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>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
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Probab=97.35 E-value=0.0011 Score=80.65 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=73.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccCh--------------------------- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPL--------------------------- 1004 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l--------------------------- 1004 (1128) ...+.+|.|+|.|.+|...++.++.+|++|+++|.+..+.+ +++.|.+.+.+ T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509) T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509) T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH Confidence 45799999999999999999999999999999998877665 56667653211 Q ss_pred -HhhhccCCEEEEecCCCcc-cccccCHHHHccCCCCcEEEEcCC Q psy13054 1005 -DTLCAESDFIFVTCALTKD-TEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1005 -~ell~~sDvV~l~lPlt~~-T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .+.++.+|+|+.+..-... .-.+|.++-++.||+|.++|++|= T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509) T PRK09424 242 FAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509) T ss_pred HHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc Confidence 1112569999988764221 234667899999999999999974 |
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>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
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Probab=97.35 E-value=0.00076 Score=62.55 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=56.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .+.+++++|+|.|.+|+.+++.+... +.++.+||+ |+++.+.|.. +++.++ T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~~----~~~~~~ 71 (86) T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPAG----VPVLEE 71 (86) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCCC----CCchHH Confidence 37889999999999999999999998 677877764 9999888854 566666 Q ss_pred HHccCCCCcEEEEcC Q psy13054 1032 QFSLMKPTAILVNTS 1046 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~a 1046 (1128) ..+.|++++++++++ T Consensus 72 ~~~~~~~~~~v~~~a 86 (86) T cd05191 72 ATAKINEGAVVIDLA 86 (86) T ss_pred HHHhcCCCCEEEecC Confidence 789999999999874 |
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
>PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
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Probab=97.33 E-value=0.00044 Score=77.80 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=73.0 Q ss_pred eEEEEEcChhhHHHHHHHhhCCC----EEEEEeCCCCchh-h-hhc-CCccc-ChHhhhccCCEEEEecCCCcccccccC Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV----SKILYTSRRVKEE-G-TAL-GAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~----~Vi~~d~~~~~~~-~-~~~-g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) +|||||+|.||+.+++.|...|. .|.+|+++..+.. . ... ++... +..+++.++|+|++++| ......++. T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl~ 80 (273) T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLLQ 80 (273) T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHHH Confidence 69999999999999999988773 6888887654433 2 222 45443 77888999999999998 444555553 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHh Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128) +....++++.++|.++-| +..+.|.+.+. T Consensus 81 -~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273) T PRK07680 81 -KLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273) T ss_pred -HHHhhcCCCCEEEEECCC--CCHHHHHHHcC Confidence 344567788999999854 36777776654 |
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>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
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Probab=97.33 E-value=0.00042 Score=79.83 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=64.7 Q ss_pred EEEEEcChhhHHHHHHHhh-CCCEEEEEeCCCCchh---hhhcCC------------------c-ccChHhhhccCCEEE Q psy13054 959 VGIVGLGNIGLETAKLLKA-FKVSKILYTSRRVKEE---GTALGA------------------Q-LVPLDTLCAESDFIF 1015 (1128) Q Consensus 959 vGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~~---~~~~g~------------------~-~~~l~ell~~sDvV~ 1015 (1128) |||+|||+||+.+++.+.. -+|+++++++..++.. +...++ . ..++++++.++|+|+ T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333) T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333) T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE Confidence 6999999999999999764 4789988876443311 221221 1 125899999999999 Q ss_pred EecCCCcccccccCHHHHccCCCCcEEEEcCC Q psy13054 1016 VTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1016 l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .|. +.+.|..+++.+.+|+++++|+-.-- T Consensus 81 e~T---p~~~~~~na~~~~~~GakaVl~~~p~ 109 (333) T TIGR01546 81 DAT---PGGIGAKNKPLYEKAGVKAIFQGGEK 109 (333) T ss_pred ECC---CCCCChhhHHHHHhCCcCEEEECCCC Confidence 875 56778999999999999999987543 |
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
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Probab=97.31 E-value=0.00089 Score=69.48 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=58.6 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+. +|++++..|..-|+.|..++.+. .++++.+++||+|+.+++-. ++|..+ T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~~----~~i~~~ 96 (160) T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGKP----NLIKAD 96 (160) T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSST----T-B-GG T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeeccc----cccccc Confidence 68999999999985 99999999999999999887544 25788999999999999843 567654 Q ss_pred HHccCCCCcEEEEcCCCcc Q psy13054 1032 QFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l 1050 (1128) .+|+|+++||++.-.. T Consensus 97 ---~ik~gavVIDvG~~~~ 112 (160) T PF02882_consen 97 ---WIKPGAVVIDVGINYV 112 (160) T ss_dssp ---GS-TTEEEEE--CEEE T ss_pred ---cccCCcEEEecCCccc Confidence 5689999999988776 |
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=97.30 E-value=0.00074 Score=76.07 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=65.5 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||.|+ +|+++|..|...|++|.+++.+.. ++.+..++||+|++++.-. ++|.++ T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~------------~l~~~~~~ADIvv~AvG~p----~~i~~~ 224 (287) T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD------------DLKKYTLDADILVVATGVK----HLIKAD 224 (287) T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC------------CHHHHHhhCCEEEEccCCc----cccCHH Confidence 58999999999999 999999999999999999874332 5788999999999977643 477766 Q ss_pred HHccCCCCcEEEEcCCC Q psy13054 1032 QFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG 1048 (1128) .+|+|+++|++|-- T Consensus 225 ---~vk~gavVIDvGin 238 (287) T PRK14176 225 ---MVKEGAVIFDVGIT 238 (287) T ss_pred ---HcCCCcEEEEeccc Confidence 67899999999854 |
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>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
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Probab=97.29 E-value=0.00029 Score=73.67 Aligned_cols=94 Identities=22% Similarity=0.347 Sum_probs=68.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc---c------------------------cCh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ---L------------------------VPL 1004 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~---~------------------------~~l 1004 (1128) .+...++.|+|.|+.|+..++.++++|++|+.+|.+..... ....+.. . ..+ T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168) T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168) T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH Confidence 67889999999999999999999999999999998765433 2221111 1 136 Q ss_pred HhhhccCCEEEEecC-CCcccccccCHHHHccCCCCcEEEEcC Q psy13054 1005 DTLCAESDFIFVTCA-LTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1005 ~ell~~sDvV~l~lP-lt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .+.++.+|+|+..+- -.+..-.+|.++.++.||++++++++| T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168) T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168) T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE Confidence 788999999986443 355666799999999999999999995 |
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
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Probab=97.26 E-value=0.00018 Score=85.10 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=76.1 Q ss_pred ccCCceeeeeeCCCCCCCCccccccCCccccceeeccc--ccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccc Q psy13054 260 LKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYN--WFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 337 (1128) Q Consensus 260 l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~--~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~l 337 (1128) +.|..+ .++|.|.||+.+++...+++. +++.++ +.....+...|++.+++++.++.+|+|+.+. .+.++ T Consensus 200 l~GktV--vViG~G~IG~~va~~ak~~Ga---~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at----G~~~~ 270 (413) T cd00401 200 IAGKVA--VVAGYGDVGKGCAQSLRGQGA---RVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT----GNKDI 270 (413) T ss_pred CCCCEE--EEECCCHHHHHHHHHHHHCCC---EEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC----CCHHH Confidence 445544 488999999998886555443 334443 3333345667888888999999999998753 46789 Q ss_pred cCHHHHhcCCCCcEEEEecCCCc-cCHHHHHH Q psy13054 338 IGRKQFSLMKPTAILINTSRGGL-LDQEALVE 368 (1128) Q Consensus 338 In~~~l~~MK~gaiLINtaRG~l-VDe~AL~~ 368 (1128) |+.+.|+.||+|++++|+|++.+ ||.++|.. T Consensus 271 i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413) T cd00401 271 ITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413) T ss_pred HHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh Confidence 99999999999999999999987 88888764 |
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=97.26 E-value=0.00072 Score=75.95 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=67.6 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.|+++.|||.+ ..|+++|.+|...|++|..++++. .++.+.+++||+|+.+++.. +++.++ T Consensus 149 ~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv~~~ 212 (279) T PRK14178 149 SIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFITPD 212 (279) T ss_pred CCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----cccCHH Confidence 5899999999999 999999999999999998887432 25889999999999999733 688887 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) .+ |+|+++|++|-.. T Consensus 213 ~v---k~GavVIDVgi~~ 227 (279) T PRK14178 213 MV---KPGATVIDVGINQ 227 (279) T ss_pred Hc---CCCcEEEEeeccc Confidence 75 9999999998554 |
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>PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
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Probab=97.24 E-value=0.00059 Score=82.17 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=89.5 Q ss_pred hhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc-----CCcc-cChHhhhcc---CCEEEEecCCCcccccccCHHHHccC Q psy13054 967 IGLETAKLLKAFKVSKILYTSRRVKEE-GTAL-----GAQL-VPLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128) Q Consensus 967 IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~-----g~~~-~~l~ell~~---sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128) ||+.+|++|..-|.+|.+||+...+.+ ..+. ++.. .+++|+++. +|+|++++|..+.+..++ ...+..| T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459) T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459) T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC Confidence 799999999999999999998777655 3321 3444 489988875 899999999999999999 4688999 Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC Q psy13054 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 1076 (1128) Q Consensus 1037 k~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E 1076 (1128) .+|.++|+++....-|...+.+.+++..+.....=|.-.+ T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~ 119 (459) T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE 119 (459) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH Confidence 9999999999999999999999999988876544444443 |
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>PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
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Probab=97.21 E-value=0.00054 Score=78.90 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=54.2 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCcccc------CchhhhHHHHHhhc-------CCChhhhhhhh Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE------GQLFSLVYDFCRYS-------IGGVTIKRLVK 763 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~~------~~~~~~~~~la~~~-------pg~~~t~~l~~ 763 (1128) ..++||||||||+|++|+++|+.|+.+|++|++++++..+.. +....-+.+++++| |-... ..+++ T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330) T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330) T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH Confidence 458999999999999999999999999999998876533221 11111266677776 65544 77777 Q ss_pred HHHHHHhc Q psy13054 764 KTFILSFG 771 (1128) Q Consensus 764 ~~~l~~~~ 771 (1128) .+++..++ T Consensus 92 ~~I~~~Lk 99 (330) T PRK05479 92 EEIEPNLK 99 (330) T ss_pred HHHHhcCC Confidence 77877775 |
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>PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
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Probab=97.19 E-value=0.0012 Score=74.53 Aligned_cols=102 Identities=18% Similarity=0.276 Sum_probs=72.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCch-h-h-hhc-CCcc-cChHhhhccCCEEEEecCCCcccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKE-E-G-TAL-GAQL-VPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~-~-~-~~~-g~~~-~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) .+|+|||+|+||+.+++.+...| .+|++|+++.... . . ... ++.. .+..+++.++|+|++++| ......+ T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277) T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277) T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH Confidence 36999999999999999998877 6888888754322 1 1 122 2332 467888999999999999 3344444 Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) +. +....++++..+|.+.-| +..+.|.+.+.. T Consensus 81 l~-~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~ 112 (277) T PRK06928 81 LK-DCAPVLTPDRHVVSIAAG--VSLDDLLEITPG 112 (277) T ss_pred HH-HHHhhcCCCCEEEEECCC--CCHHHHHHHcCC Confidence 42 233456778899999877 667788877643 |
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>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=97.18 E-value=0.001 Score=74.94 Aligned_cols=122 Identities=20% Similarity=0.204 Sum_probs=86.1 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-| .+|+++|..|..-|+.|.+++.+. .++.+.+++||+|+.+++-. +++..+ T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG~p----~~i~~~ 217 (285) T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVGKP----DLIKAS 217 (285) T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecCCC----CcCCHH Confidence 5899999999999 999999999999999999886432 24778999999999999733 578877 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) .+ |+|+++|++|-..+ .+|++-| ||-.++ .... --.+||=-||.-.-+..-+.+-+ T Consensus 218 ~v---k~GavVIDvGi~~~----------~~gklvG---Dvd~e~-------v~~~-a~~iTPVPGGVGpvT~a~L~~N~ 273 (285) T PRK14191 218 MV---KKGAVVVDIGINRL----------NDGRLVG---DVDFEN-------VAPK-ASFITPVPGGVGPMTIVSLLENT 273 (285) T ss_pred Hc---CCCcEEEEeecccc----------cCCceec---cccHHH-------Hhhh-ccEEecCCCCChHHHHHHHHHHH Confidence 66 89999999986553 1355544 442111 0111 13489987776555554444444 Q ss_pred HHH Q psy13054 1112 AEN 1114 (1128) Q Consensus 1112 ~~n 1114 (1128) ++- T Consensus 274 ~~a 276 (285) T PRK14191 274 LIA 276 (285) T ss_pred HHH Confidence 433 |
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>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
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Probab=97.17 E-value=0.00039 Score=71.92 Aligned_cols=61 Identities=23% Similarity=0.329 Sum_probs=42.9 Q ss_pred ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCC-ccCHHHHHH Q psy13054 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG-LLDQEALVE 368 (1128) Q Consensus 304 ~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~-lVDe~AL~~ 368 (1128) +...|++..+++|+++++|+|+... -.+++|..+.|++||+|+++.|++.-. =||-+.|.+ T Consensus 62 A~~dGf~v~~~~~a~~~adi~vtaT----G~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162) T PF00670_consen 62 AAMDGFEVMTLEEALRDADIFVTAT----GNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162) T ss_dssp HHHTT-EEE-HHHHTTT-SEEEE-S----SSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT T ss_pred hhhcCcEecCHHHHHhhCCEEEECC----CCccccCHHHHHHhcCCeEEeccCcCceeEeeccccc Confidence 3445778889999999999988753 567899999999999999999997543 256555543 |
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
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Probab=97.16 E-value=0.00079 Score=77.36 Aligned_cols=96 Identities=21% Similarity=0.277 Sum_probs=66.0 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcCCccc---ChHhhhccCCEEEEecCCCcccccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) +.|++|+|||.|.||+.+++.++..| .+|+++++...+.. +...+.... ++.+.+.++|+|+.+.|...- ..+ T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311) T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311) T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH Confidence 68999999999999999999999876 57778887655443 444555433 356778899999999995433 222 Q ss_pred cCHHHHccC-CCCcEEEEcCCCccc Q psy13054 1028 IGRKQFSLM-KPTAILVNTSRGGLL 1051 (1128) Q Consensus 1028 i~~~~l~~m-k~ga~lIN~aRG~lV 1051 (1128) + +..++.. +++.++|+.+...-+ T Consensus 255 ~-~~~~~~~~~~~~~viDlavPrdi 278 (311) T cd05213 255 V-ERAMKKRSGKPRLIVDLAVPRDI 278 (311) T ss_pred H-HHHHhhCCCCCeEEEEeCCCCCC Confidence 2 2233322 356788877754433 |
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
>PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
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Probab=97.15 E-value=0.0013 Score=76.14 Aligned_cols=106 Identities=22% Similarity=0.261 Sum_probs=73.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-----------------ccChHhhhccCCEEEEecC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-----------------LVPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-----------------~~~l~ell~~sDvV~l~lP 1019 (1128) ++|+|||.|.||..+|..|...|.+|.+|++..........+.. ..+-.+.++.+|+|++++| T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk 82 (341) T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTVK 82 (341) T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEec Confidence 47999999999999999999999999999864322212222321 1222256789999999999 Q ss_pred CCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128) . +++..++ ......++++.++|.+.-| +-..+.+.+.+...++ T Consensus 83 ~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341) T PRK08229 83 S-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341) T ss_pred C-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE Confidence 4 4555555 3455667889999988654 4455667777766554 |
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>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=97.13 E-value=0.0014 Score=74.24 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=64.8 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||.|. +|+++|..|...|++|.+++++. .++.+.+++||+|+++++ .+. +++.+ T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~~---~v~~~ 219 (283) T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KPE---LIKKD 219 (283) T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CCC---cCCHH Confidence 58999999999998 99999999999999999887521 257778899999999997 332 67765 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) . +|+|+++|+++-.. T Consensus 220 ~---lk~gavViDvg~n~ 234 (283) T PRK14192 220 W---IKQGAVVVDAGFHP 234 (283) T ss_pred H---cCCCCEEEEEEEee Confidence 4 68999999997554 |
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>PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
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Probab=97.13 E-value=0.00084 Score=80.41 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=68.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcCCccc---ChHhhhccCCEEEEecCCCccccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .+.|++|+|||.|.||+.+++.|+..|+ +|+++++...+.. +...+.... ++.+.+.++|+|+.+.|.. .. T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423) T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423) T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc Confidence 3688999999999999999999999998 7888887665543 334443332 4567788999999987643 34 Q ss_pred ccCHHHHccC-----CCCcEEEEcCCCc Q psy13054 1027 LIGRKQFSLM-----KPTAILVNTSRGG 1049 (1128) Q Consensus 1027 li~~~~l~~m-----k~ga~lIN~aRG~ 1049 (1128) +++++.++.+ +.+.++|+.+-.. T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423) T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAVPR 283 (423) T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCCCC Confidence 5777777654 2456777776443 |
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>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
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Probab=97.12 E-value=0.016 Score=69.44 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=53.6 Q ss_pred ccCCCeEEEEEc----------ChhhHHHHHHHhhCC-CEEEEEeCCCCchhh-hhcCCcccChHhhhccCCEEEEecCC Q psy13054 953 GLKGATVGIVGL----------GNIGLETAKLLKAFK-VSKILYTSRRVKEEG-TALGAQLVPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 953 ~L~gktvGIIG~----------G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~~-~~~g~~~~~l~ell~~sDvV~l~lPl 1020 (1128) ++.|++|+|+|+ ..-...+++.|...| .+|.+|||....... ........+++|.++.||+|+++.+- T Consensus 317 ~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~ 396 (415) T PRK11064 317 RASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVDH 396 (415) T ss_pred CcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCCC Confidence 578999999998 346779999999996 999999998654321 11123446899999999999999885 Q ss_pred C Q psy13054 1021 T 1021 (1128) Q Consensus 1021 t 1021 (1128) . T Consensus 397 ~ 397 (415) T PRK11064 397 S 397 (415) T ss_pred H Confidence 4 |
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>PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
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Probab=97.10 E-value=0.00091 Score=75.13 Aligned_cols=103 Identities=20% Similarity=0.282 Sum_probs=68.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhC--CCEEE-EEeCCCCchh--hhhcCCc-ccChHhhhccCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF--KVSKI-LYTSRRVKEE--GTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af--G~~Vi-~~d~~~~~~~--~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) .+|||||+|.||+.+++.+... +++++ ++|+...+.. ....+.. +.++++++.++|+|++|.|.. .. -+ T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~---~~ 76 (265) T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AV---EE 76 (265) T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HH---HH Confidence 3799999999999999998765 56644 4565444333 2233443 347999999999999998732 21 11 Q ss_pred HHHccCCCCcEEEEcCCCcccCH---HHHHHHHhcCC Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQ---EALVEFLKDKK 1064 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde---~aL~~aL~~g~ 1064 (1128) -..+.++.|.-++.++-|.+.|. +.|.++.+++. T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g 113 (265) T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENN 113 (265) T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC Confidence 22334556666777888888774 45666666654 |
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>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
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Probab=97.05 E-value=0.0038 Score=63.53 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=66.2 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|+|-+ .+|+++|.+|...|++|..++.+.. ++++..++||+|+.+.+.. ++|+.+ T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~------------~l~~~v~~ADIVvsAtg~~----~~i~~~ 88 (140) T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI------------QLQSKVHDADVVVVGSPKP----EKVPTE 88 (140) T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc------------CHHHHHhhCCEEEEecCCC----CccCHH Confidence 5899999999995 7899999999999999998875432 6788999999999999865 568865 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) . +|||+++|+++... T Consensus 89 ~---ikpGa~Vidvg~~~ 103 (140) T cd05212 89 W---IKPGATVINCSPTK 103 (140) T ss_pred H---cCCCCEEEEcCCCc Confidence 5 67999999998665 |
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
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Probab=97.04 E-value=0.0035 Score=70.14 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=68.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC---CEEEEEeCCCCchh-hhh-cCCcc-cChHhhhccCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK---VSKILYTSRRVKEE-GTA-LGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG---~~Vi~~d~~~~~~~-~~~-~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ++|+|||+|.||+.+++.+...| .+|.+++++..+.. ..+ .++.. .+.++++.++|+|++++|. +..+.++.. T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~~ 81 (267) T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLSE 81 (267) T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHHH Confidence 47999999999999999998888 68888987654433 222 35544 3678889999999999983 334444322 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHh Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128) ....+ +.++|++.-|- ..+.+.+.+. T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267) T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267) T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC Confidence 11222 46888886653 5667776665 |
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>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
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Probab=97.02 E-value=0.0061 Score=66.96 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=103.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCE---EEEEeCC----CCch--------h-hhhcCCc-c-cChHhhhccCCEE Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVS---KILYTSR----RVKE--------E-GTALGAQ-L-VPLDTLCAESDFI 1014 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~---Vi~~d~~----~~~~--------~-~~~~g~~-~-~~l~ell~~sDvV 1014 (1128) .+.++++.|+|.|..|+.+|+.|...|++ ++++|++ ..+. . ....+.. . .++.+.++++|+| T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvl 101 (226) T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVF 101 (226) T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEE Confidence 36789999999999999999999999985 8889887 3332 1 1222111 1 3677888999999 Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC-ceEEEEeccCCCCCCCCCccccCCCeEEC Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK-IGGAGLDVMIPEPLPADHPLVQLDNCVLT 1093 (1128) Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~-i~gaaLDV~e~EPl~~~~pL~~~pNvilT 1093 (1128) +.+.| .++++++.++.|+++.++...+.. ..|.-+.++.+.|- |..-|. +.+ ..+.-|+++= T Consensus 102 IgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~~-----~~Q~nn~~~f 164 (226) T cd05311 102 IGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SDF-----PNQVNNVLGF 164 (226) T ss_pred EeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CCC-----ccccceeeec Confidence 99887 478999999999999998888843 34444444444443 333331 222 3367799999 Q ss_pred CCCCC-----CcHHHHHHHHHHHHHHHHHHHcC Q psy13054 1094 PHTSS-----ATKAVRDEKSSTSAENIIRGYKG 1121 (1128) Q Consensus 1094 PHiag-----~t~e~~~~~~~~~~~nl~~~l~G 1121 (1128) |=++- ......++|...+++.|..+..- T Consensus 165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~ 197 (226) T cd05311 165 PGIFRGALDVRATKITEEMKLAAAEAIADLAEE 197 (226) T ss_pred chhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCc Confidence 97653 22334466777777777666543 |
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
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Probab=97.02 E-value=0.00078 Score=69.63 Aligned_cols=90 Identities=17% Similarity=0.282 Sum_probs=62.2 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh--c------------CCcc-cChHhhhccCCEEEEecCCC Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA--L------------GAQL-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~--~------------g~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128) +|+|+|.|+.|.++|..|...|.+|..|.++....+ ... . .+.. .+++++++.+|+|++++|.. T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157) T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157) T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH Confidence 589999999999999999999999999986543222 111 0 1111 37899999999999999943 Q ss_pred cccccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) ..+.++ ++....++++..+|++..|= T Consensus 81 -~~~~~~-~~l~~~l~~~~~ii~~~KG~ 106 (157) T PF01210_consen 81 -AHREVL-EQLAPYLKKGQIIISATKGF 106 (157) T ss_dssp -GHHHHH-HHHTTTSHTT-EEEETS-SE T ss_pred -HHHHHH-HHHhhccCCCCEEEEecCCc Confidence 344444 34555668899999998774 |
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
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Probab=97.02 E-value=0.0013 Score=69.94 Aligned_cols=144 Identities=17% Similarity=0.212 Sum_probs=81.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC---------------------Ccc-cChHhhhccCCEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALG---------------------AQL-VPLDTLCAESDFI 1014 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g---------------------~~~-~~l~ell~~sDvV 1014 (1128) ++|+|||+|.+|..+|..+...|.+|++||....+.+....| ... .+.++.+++||++ T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185) T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185) T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE Confidence 479999999999999999999999999999776533311111 112 2567778999999 Q ss_pred EEecCCCcccccccC--------HHHHccCCCCcEEEEcCCCcccCHHHHH-HHHhcCCceEEEEe-ccCCCCCCCCCc- Q psy13054 1015 FVTCALTKDTEQLIG--------RKQFSLMKPTAILVNTSRGGLLDQEALV-EFLKDKKIGGAGLD-VMIPEPLPADHP- 1083 (1128) Q Consensus 1015 ~l~lPlt~~T~~li~--------~~~l~~mk~ga~lIN~aRG~lVde~aL~-~aL~~g~i~gaaLD-V~e~EPl~~~~p- 1083 (1128) ++|+|....-.+-.| ....+.++++.++|.-|.-.+=.++.++ ..|++..-...-++ +|-+|=+.+.+. T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185) T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185) T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc Confidence 999994333322222 2455678899999999999987777554 44443221101111 267787766654 Q ss_pred --cccCCCeEECCCCCCCcHHHHH Q psy13054 1084 --LVQLDNCVLTPHTSSATKAVRD 1105 (1128) Q Consensus 1084 --L~~~pNvilTPHiag~t~e~~~ 1105 (1128) +...|.|++ |.+.+..+ T Consensus 161 ~d~~~~~rvV~-----G~~~~~~~ 179 (185) T PF03721_consen 161 EDFRNPPRVVG-----GCDDESAE 179 (185) T ss_dssp HHHHSSSEEEE-----EESSHHHH T ss_pred hhccCCCEEEE-----eCCcHHHH Confidence 445566654 45555444 |
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
>PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
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Probab=96.97 E-value=0.0015 Score=79.87 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=70.3 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhc-CC--cc---cChHhhhccCCEEEEecCCCccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTAL-GA--QL---VPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~-g~--~~---~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) +.+++|+|||.|.||+.+++.|...|+ +|+++++...+.. .... +. .. .++.+.+.++|+|+.+.| .. T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s~ 340 (519) T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---SE 340 (519) T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---CC Confidence 779999999999999999999999997 6889987766544 2222 22 12 256678999999999765 44 Q ss_pred ccccCHHHHccCCCC-------cEEEEcCCCccc Q psy13054 1025 EQLIGRKQFSLMKPT-------AILVNTSRGGLL 1051 (1128) Q Consensus 1025 ~~li~~~~l~~mk~g-------a~lIN~aRG~lV 1051 (1128) ..+|.++.++.|+++ -+||+.|=..=| T Consensus 341 ~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdI 374 (519) T PLN00203 341 TPLFLKEHVEALPPASDTVGGKRLFVDISVPRNV 374 (519) T ss_pred CCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCC Confidence 557889998887432 367777655433 |
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>PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
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Probab=96.95 E-value=0.0024 Score=70.44 Aligned_cols=104 Identities=15% Similarity=0.184 Sum_probs=68.3 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC---CE-EEEEeCCC-Cchh--hhhcCCcc-cChHhhhccCCEEEEecCCCccccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK---VS-KILYTSRR-VKEE--GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG---~~-Vi~~d~~~-~~~~--~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) ...+|||||.|++|+.+++.+..-| .+ +++++++. .+.. ....++.. .++++++.++|+|++++|.. ..+. T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245) T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245) T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH Confidence 3578999999999999999987655 33 56676543 2222 22345543 47889999999999999943 3333 Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ++. .++...++.++|+++=| ++.+.|.+.+..+ T Consensus 82 v~~--~l~~~~~~~~vis~~~g--i~~~~l~~~~~~~ 114 (245) T PRK07634 82 LLA--ELSPLLSNQLVVTVAAG--IGPSYLEERLPKG 114 (245) T ss_pred HHH--HHHhhccCCEEEEECCC--CCHHHHHHHcCCC Confidence 332 12222236799999766 5555677666543 |
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>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=96.94 E-value=0.0036 Score=70.61 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=87.4 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.+++++. .++.+.+++||+|+.+++-. ++|+.+ T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~p----~~i~~~ 218 (284) T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGKP----KLITAD 218 (284) T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCCC----CcCCHH Confidence 5899999999996 689999999999999999886432 26889999999999999743 589987 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) .+ |+|+++|++|.-.+. +|++.| ||-..+ ... ---.+||--||.-.-+..-+.+-+ T Consensus 219 ~i---k~gavVIDvGi~~~~----------~gkl~G---Dvd~e~-------v~~-~a~~iTPVPGGVGpvT~a~L~~N~ 274 (284) T PRK14190 219 MV---KEGAVVIDVGVNRLE----------NGKLCG---DVDFDN-------VKE-KASYITPVPGGVGPMTITMLMHNT 274 (284) T ss_pred Hc---CCCCEEEEeeccccC----------CCCeec---cCcHHH-------Hhh-hceEecCCCCCChHHHHHHHHHHH Confidence 77 799999999977642 345544 552111 111 124589988887665554444444 Q ss_pred HH Q psy13054 1112 AE 1113 (1128) Q Consensus 1112 ~~ 1113 (1128) ++ T Consensus 275 ~~ 276 (284) T PRK14190 275 VE 276 (284) T ss_pred HH Confidence 33 |
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>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
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Probab=96.93 E-value=0.0051 Score=73.70 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=64.2 Q ss_pred ccCCCeEEEEEc----------ChhhHHHHHHHhhCCCEEEEEeCCCCchhh-hhcCCcccChHh-hhccCCEEEEecCC Q psy13054 953 GLKGATVGIVGL----------GNIGLETAKLLKAFKVSKILYTSRRVKEEG-TALGAQLVPLDT-LCAESDFIFVTCAL 1020 (1128) Q Consensus 953 ~L~gktvGIIG~----------G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~-~~~g~~~~~l~e-ll~~sDvV~l~lPl 1020 (1128) .+.|++|+|+|+ ..-+..+++.|...|.+|.+|||....... ...+.. ++++ .++.||+|+++..- T Consensus 311 ~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~--~~~~~~~~~ad~vvi~t~h 388 (425) T PRK15182 311 NVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGII--PVSEVKSSHYDAIIVAVGH 388 (425) T ss_pred CCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcc--cchhhhhcCCCEEEEccCC Confidence 478999999999 456789999999999999999998544332 222321 2223 46789999999885 Q ss_pred CcccccccCHHHHc-cCCCCcEEEEcCCCccc Q psy13054 1021 TKDTEQLIGRKQFS-LMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1021 t~~T~~li~~~~l~-~mk~ga~lIN~aRG~lV 1051 (1128) .+ -+. ++.+.+. .||...++|+ +|+-+. T Consensus 389 ~~-f~~-~~~~~~~~~~~~~~~iiD-~r~~~~ 417 (425) T PRK15182 389 QQ-FKQ-MGSEDIRGFGKDKHVLYD-LKYVLP 417 (425) T ss_pred HH-hhc-CCHHHHHHhcCCCCEEEE-CCCCCC Confidence 43 333 4555554 4554568888 466553 |
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>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
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Probab=96.93 E-value=0.0015 Score=69.27 Aligned_cols=112 Identities=18% Similarity=0.242 Sum_probs=73.2 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h----hh-------cC-------------Ccc-cChHhhhccC Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G----TA-------LG-------------AQL-VPLDTLCAES 1011 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~----~~-------~g-------------~~~-~~l~ell~~s 1011 (1128) +|+|||.|.||+.+|..+...|++|.+||....... . .. .+ +.. .+++++. .+ T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180) T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180) T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh Confidence 699999999999999999999999999998765322 0 00 11 122 3788888 99 Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEecc Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128) Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128) |+|+=++|..-+.+.=+=++.-+.++++++|...+.+ +....|...+.. +=+..++=.| T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~~-p~R~ig~Hf~ 138 (180) T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALSR-PERFIGMHFF 138 (180) T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSST-GGGEEEEEE- T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccCc-CceEEEEecc Confidence 9999999988887765555666777899998766444 455666666642 2234444444 |
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
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Probab=96.91 E-value=0.0012 Score=71.06 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=34.5 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) .+++|||++|+|+|++|+.+|++|..+|++|+++|.. T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200) T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200) T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC Confidence 4589999999999999999999999999999999874 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
>PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
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Probab=96.90 E-value=0.00095 Score=75.88 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=56.7 Q ss_pred CCccc-CHHHHhhcCCEEEEecCCCcccccccCH--HHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 308 GAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR--KQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 308 g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~--~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) ++..+ +++|++++||+|++++|-++.++.++.. ..++.+++|.++||++........++.+.+++..+ T Consensus 45 g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~ 115 (296) T PRK11559 45 GAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGI 115 (296) T ss_pred CCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCC Confidence 44443 7899999999999999998888887643 36788999999999999998888899999987644 |
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>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
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Probab=96.90 E-value=0.0026 Score=71.89 Aligned_cols=110 Identities=21% Similarity=0.229 Sum_probs=70.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcC----Ccc-cChHhhhccCCEEEEecCCCccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALG----AQL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g----~~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) .+.++++.|+|.|.+|++++..|...| .+|.+++++..+.+ ..... +.. .++.+.+.++|+|++++|..-.. T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278) T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278) T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC Confidence 367899999999999999999999999 68999987665543 22221 111 23457788999999999965432 Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ..-...-.+..++++++++++.-.. ..+.=|..|-+.| T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T~ll~~A~~~G 237 (278) T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPTPFLAWAKAQG 237 (278) T ss_pred CCCCCCCCHHHcCCCCEEEEeecCC-CCCHHHHHHHHCc Confidence 1101111234456777777776533 3344334444443 |
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>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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Probab=96.89 E-value=0.0093 Score=69.11 Aligned_cols=142 Identities=19% Similarity=0.202 Sum_probs=97.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhh--------------------cC-CcccChHhhhccCCEEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTA--------------------LG-AQLVPLDTLCAESDFIF 1015 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~--------------------~g-~~~~~l~ell~~sDvV~ 1015 (1128) .+|||||+|.||.++|-.+..-|.+|++||-+..+-+... .| .+..+=-+.++.||+++ T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i 89 (436) T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI 89 (436) T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE Confidence 7899999999999999999999999999998765433111 11 12222223455999999 Q ss_pred EecCCCccccc-------ccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC--CceEEEEec---cCCCCCCCC Q psy13054 1016 VTCALTKDTEQ-------LIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK--KIGGAGLDV---MIPEPLPAD 1081 (1128) Q Consensus 1016 l~lPlt~~T~~-------li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g--~i~gaaLDV---~e~EPl~~~ 1081 (1128) +|+| ||-+.+ +.+ +..-..||+|.++|==|.-..=.++.++.-|.+. .+ .+.-|. |.+|-..+. T Consensus 90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~PG 167 (436) T COG0677 90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLPG 167 (436) T ss_pred EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCCC Confidence 9999 554442 111 1345678999999999999888899999887664 12 122353 567765556 Q ss_pred Ccccc---CCCeEECCCCCCCcHHHHH Q psy13054 1082 HPLVQ---LDNCVLTPHTSSATKAVRD 1105 (1128) Q Consensus 1082 ~pL~~---~pNvilTPHiag~t~e~~~ 1105 (1128) +.+.. .|.| +||.|+.+.+ T Consensus 168 ~~~~el~~~~kV-----IgG~tp~~~e 189 (436) T COG0677 168 NVLKELVNNPKV-----IGGVTPKCAE 189 (436) T ss_pred chhhhhhcCCce-----eecCCHHHHH Confidence 65555 4444 5777776654 |
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>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
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Probab=96.83 E-value=0.0013 Score=74.80 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=54.8 Q ss_pred cCHHHHhhcCCEEEEecCCCccccccc-CH-HHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 312 VPLDTLCAESDFIFVTCALTKDTEQLI-GR-KQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 312 vsLdeLl~~SDiVslh~PLT~~T~~lI-n~-~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) .+.++++++||+|++++|-++.++.++ +. ..++.+++|.++||+++....+..+|.+.+++..+ T Consensus 47 ~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291) T TIGR01505 47 ETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291) T ss_pred CCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC Confidence 378899999999999999888887764 43 35788999999999999998888999999998643 |
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
>TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
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Probab=96.80 E-value=0.002 Score=70.26 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=62.3 Q ss_pred eEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh--------cCC----cccChHhhhccCCEEEEecCCCcc Q psy13054 958 TVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA--------LGA----QLVPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 958 tvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~--------~g~----~~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) +|+||| .|+||+.+++.|...|.+|++++++.++.. ... .+. ...+..+.++++|+|++++|.. . T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~-~ 80 (219) T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD-H 80 (219) T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-H Confidence 699997 999999999999999999999976554432 111 121 1236678899999999999943 3 Q ss_pred cccccCHHHHccCCCCcEEEEcCCCccc Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG~lV 1051 (1128) ...++. +.-..++ +.++|++.-|--. T Consensus 81 ~~~~l~-~l~~~l~-~~vvI~~~ngi~~ 106 (219) T TIGR01915 81 VLKTLE-SLRDELS-GKLVISPVVPLAS 106 (219) T ss_pred HHHHHH-HHHHhcc-CCEEEEeccCcee Confidence 333332 2212233 5899999777443 |
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
>TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
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Probab=96.75 E-value=0.0032 Score=72.49 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=32.2 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) |+||+|||||+|++|+++|+.++.+|+++++++++. T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~ 36 (314) T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKG 36 (314) T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcC Confidence 578999999999999999999999999988776544 |
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
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Probab=96.73 E-value=0.0055 Score=68.63 Aligned_cols=98 Identities=18% Similarity=0.267 Sum_probs=75.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCchh--hhhcCCc-ccChHhhhccCCEEEEecCCCcccccccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKEE--GTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~~--~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) ++|||||+|+||++++.-+..-| -+|++.++..++.. ..++|+. ..+..++..++|+|++++. |+ .= T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266) T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266) T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH Confidence 57999999999999999999888 57887776666553 4566666 3467789999999999998 32 12 Q ss_pred HHHHccCC---CCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1030 RKQFSLMK---PTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1030 ~~~l~~mk---~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) .+.+..++ ++.++|.++=| |..+.|.+.|.+ T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~ 109 (266) T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGG 109 (266) T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCC Confidence 46677776 69999999877 566777777653 |
|
>PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
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Probab=96.73 E-value=0.0047 Score=70.27 Aligned_cols=105 Identities=12% Similarity=0.189 Sum_probs=72.5 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc--------------ccChHhhhccCCEEEEecCCCc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ--------------LVPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~--------------~~~l~ell~~sDvV~l~lPlt~ 1022 (1128) +|+|||.|.||..+|..|...|.+|.+|++ ..+.+ ..+.+.. ..+.+++.+.+|+|++++|. . T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~ 79 (305) T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-Y 79 (305) T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-c Confidence 699999999999999999998999999986 33222 2222221 12455667899999999994 3 Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ 1066 (1128) ++..++ +..-...+++.++|.+.-| +-.++.+.+.+.+.++. T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305) T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305) T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE Confidence 444444 2333445678889888666 44567777777665544 |
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>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
---|
Probab=96.73 E-value=0.0088 Score=63.73 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=65.8 Q ss_pred ccccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhh--hhcCCcc---cC----hHhhhccCCEEEEecCC Q psy13054 951 IMGLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEG--TALGAQL---VP----LDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 951 ~~~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~--~~~g~~~---~~----l~ell~~sDvV~l~lPl 1020 (1128) ..++.||++.|||-+ .+|+++|.+|..-|++|.++|.+...... ....... .+ +.+.+++||||+.+++- T Consensus 57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~ 136 (197) T cd01079 57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS 136 (197) T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC Confidence 347999999999997 57999999999999999999643321110 0000111 12 78999999999999994 Q ss_pred Ccccccc-cCHHHHccCCCCcEEEEcCC Q psy13054 1021 TKDTEQL-IGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1021 t~~T~~l-i~~~~l~~mk~ga~lIN~aR 1047 (1128) . ++ +..+. .|+|+++||+|- T Consensus 137 ~----~~~i~~d~---ik~GavVIDVGi 157 (197) T cd01079 137 P----NYKVPTEL---LKDGAICINFAS 157 (197) T ss_pred C----CCccCHHH---cCCCcEEEEcCC Confidence 4 45 77654 479999999983 |
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
>PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
---|
Probab=96.69 E-value=0.008 Score=68.26 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=73.1 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc------------cChHhhhccCCEEEEecCCCccc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL------------VPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~------------~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) +|+|||.|.||..+|..|...|.+|.+++++....+ ....|... .+.+++ +.+|+|++++|. .++ T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~~ 79 (304) T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQL 79 (304) T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-ccH Confidence 699999999999999999999999999987554433 22234321 235555 899999999994 445 Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) ..++. ..-..+.+++.+|...-| +-.++.+.+.+...++.+ T Consensus 80 ~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304) T PRK06522 80 PAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304) T ss_pred HHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE Confidence 54442 333445677888888777 334566666666655543 |
|
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.68 E-value=0.0084 Score=67.63 Aligned_cols=125 Identities=20% Similarity=0.285 Sum_probs=86.7 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.++.++. .++.+..++||||+.+++-. ++|+.+ T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~~----~~i~~~ 217 (284) T PRK14170 154 QIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGLA----KFVKKD 217 (284) T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCCc----CccCHH Confidence 5899999999997 579999999999999999886543 25889999999999999854 578765 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) .+ |+|+++|++|--.+. +|++.| ||-.++- ... --.+||==||.-.-+..-+.+-+ T Consensus 218 ~v---k~GavVIDvGin~~~----------~gkl~G---Dvdfe~~-------~~~-a~~iTPVPGGVGpvT~a~L~~N~ 273 (284) T PRK14170 218 YI---KPGAIVIDVGMDRDE----------NNKLCG---DVDFDDV-------VEE-AGFITPVPGGVGPMTITMLLANT 273 (284) T ss_pred Hc---CCCCEEEEccCcccC----------CCCeec---ccchHHH-------Hhh-ccEecCCCCChHHHHHHHHHHHH Confidence 54 699999999866531 355544 4421110 111 13578887776655554444444 Q ss_pred HHHHHH Q psy13054 1112 AENIIR 1117 (1128) Q Consensus 1112 ~~nl~~ 1117 (1128) ++-.++ T Consensus 274 ~~a~~~ 279 (284) T PRK14170 274 LKAAKR 279 (284) T ss_pred HHHHHH Confidence 433333 |
|
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=96.66 E-value=0.0032 Score=70.58 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=73.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-hhcCCc-------ccChHhhhccCCEEEEe--cCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-TALGAQ-------LVPLDTLCAESDFIFVT--CALT 1021 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-~~~g~~-------~~~l~ell~~sDvV~l~--lPlt 1021 (1128) +...-+|.|||.|-+|..-|+++.++|.+|.+.|.+.++.. . ...+.+ ...+++.+.++|+|+-. +|.. T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371) T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371) T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC Confidence 66778899999999999999999999999999998766543 1 122222 12588999999999954 4533 Q ss_pred cccccccCHHHHccCCCCcEEEEcC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) ..-.++.++.+++||||+++|+++ T Consensus 245 -kaPkLvt~e~vk~MkpGsVivDVA 268 (371) T COG0686 245 -KAPKLVTREMVKQMKPGSVIVDVA 268 (371) T ss_pred -CCceehhHHHHHhcCCCcEEEEEE Confidence 344588999999999999999995 |
|
>KOG2380|consensus | Back alignment and domain information |
---|
Probab=96.66 E-value=0.0025 Score=71.79 Aligned_cols=134 Identities=16% Similarity=0.275 Sum_probs=94.3 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhh-ccCCEEEEecCCCcccccccCHHH Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLC-AESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell-~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) -++|||||+|++|+-.|+.+-..|..|+.+++. +-.. +...|... ..+.++. +++|+|.+|+. ...+..++-.-- T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRs-dyssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatyp 129 (480) T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRS-DYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYP 129 (480) T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcc-hhHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcC Confidence 467999999999999999999999998887644 4443 55566654 3566665 56999999887 344555554445 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC----CCCCCccccCCCeEECCCCC Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP----LPADHPLVQLDNCVLTPHTS 1097 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP----l~~~~pL~~~pNvilTPHia 1097 (1128) ++++|.|++|+.+-.-....-+++.+-|.+. .|....-| -..++.+-.+|=|+.--.++ T Consensus 130 fqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydkvRig 192 (480) T KOG2380|consen 130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIG 192 (480) T ss_pred chhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEEeecc Confidence 7789999999999888888788888877553 23333333 23355566677666554444 |
|
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.65 E-value=0.0057 Score=68.86 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=64.8 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-| .+|+++|.+|..-|+.|.++..+. .++.+..++||+|+.++.-. +++.++ T Consensus 154 ~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvGkp----~~i~~~ 217 (281) T PRK14183 154 DVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVGKP----NLITED 217 (281) T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCcc----cccCHH Confidence 6899999999999 899999999999999998775432 25788999999999999743 578765 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) .+ |+|+++|++|--. T Consensus 218 ~v---k~gavvIDvGin~ 232 (281) T PRK14183 218 MV---KEGAIVIDIGINR 232 (281) T ss_pred Hc---CCCcEEEEeeccc Confidence 54 6999999998444 |
|
>PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
---|
Probab=96.62 E-value=0.00079 Score=79.51 Aligned_cols=90 Identities=21% Similarity=0.181 Sum_probs=63.0 Q ss_pred hccCCceeeeeeCCCCCCCCccccccCCccccceeeccccc-------------ccccccccCCcccCHHHHhhcCCEEE Q psy13054 259 SLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWF-------------ERSNGTALGAQLVPLDTLCAESDFIF 325 (1128) Q Consensus 259 ~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~-------------~~~~~~~~g~~~vsLdeLl~~SDiVs 325 (1128) .++|..+. ++|+|.+|+.-|. + ++..|.+.. +.+.+.+-|++..+++|++++||+|+ T Consensus 33 ~LkgKtIa--IIGyGSqG~AqAl---N-----LrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVv 102 (487) T PRK05225 33 YLKGKKIV--IVGCGAQGLNQGL---N-----MRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVI 102 (487) T ss_pred HhCCCEEE--EEccCHHHHHHhC---C-----CccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEE Confidence 35565543 8899999985443 2 223333322 11122234777789999999999999 Q ss_pred EecCCCcccccccCHHHHhcCCCCcEEEEecCCCcc Q psy13054 326 VTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 361 (1128) Q Consensus 326 lh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lV 361 (1128) +.+|.+ + ++.|+++.+..||+|++|. -|.|=-| T Consensus 103 iLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGFni 135 (487) T PRK05225 103 NLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGFNI 135 (487) T ss_pred EcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCcee Confidence 999999 4 8999999999999999875 4566543 |
|
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.58 E-value=0.0075 Score=68.16 Aligned_cols=130 Identities=22% Similarity=0.287 Sum_probs=90.1 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.++.++.. ++.+..++||+|++++.-. ++++++ T Consensus 152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~------------~l~~~~~~ADIvIsAvGkp----~~i~~~ 215 (287) T PRK14173 152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ------------DLPAVTRRADVLVVAVGRP----HLITPE 215 (287) T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCCc----CccCHH Confidence 5899999999996 6799999999999999988865432 5789999999999999843 678876 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC--ceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK--IGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~--i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~ 1109 (1128) .+ |+|+++|++|--.+.+ ++|+ +.| ||- .+- .... -.+||==||.-.-+..-+.+ T Consensus 216 ~v---k~GavVIDVGin~~~~--------~~gk~~l~G---DVd-~~v-------~~~a-~~iTPVPGGVGp~T~a~L~~ 272 (287) T PRK14173 216 MV---RPGAVVVDVGINRVGG--------NGGRDILTG---DVH-PEV-------AEVA-GALTPVPGGVGPMTVAMLMA 272 (287) T ss_pred Hc---CCCCEEEEccCccccC--------CCCceeeec---ccc-HhH-------HhhC-cEEecCCCChhHHHHHHHHH Confidence 65 7999999999766432 1344 433 553 111 1111 24888877765555544444 Q ss_pred HHHHHHHHHHcC Q psy13054 1110 TSAENIIRGYKG 1121 (1128) Q Consensus 1110 ~~~~nl~~~l~G 1121 (1128) -++.-.++...| T Consensus 273 N~~~a~~~~~~~ 284 (287) T PRK14173 273 NTVIAALRRRGG 284 (287) T ss_pred HHHHHHHHHccC Confidence 444444444444 |
|
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.57 E-value=0.0073 Score=68.09 Aligned_cols=78 Identities=19% Similarity=0.274 Sum_probs=65.4 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.++.++. .++.+..++||+|+.++.-. ++|+++ T Consensus 154 ~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGkp----~~i~~~ 217 (282) T PRK14166 154 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGCV----NLLRSD 217 (282) T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCCc----CccCHH Confidence 5899999999997 579999999999999999886543 25889999999999999844 578876 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) . .|+|+++|++|--. T Consensus 218 ~---vk~GavVIDvGin~ 232 (282) T PRK14166 218 M---VKEGVIVVDVGINR 232 (282) T ss_pred H---cCCCCEEEEecccc Confidence 4 47999999998444 |
|
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.57 E-value=0.011 Score=66.41 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=65.6 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.+++++. .++.+..++||+|+.+++-. ++|+++ T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGkp----~~i~~~ 218 (278) T PRK14172 155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGRP----KFIDEE 218 (278) T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCCc----CccCHH Confidence 5899999999996 579999999999999999887543 25889999999999999854 578876 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) . .|+|+++|++|--. T Consensus 219 ~---ik~gavVIDvGin~ 233 (278) T PRK14172 219 Y---VKEGAIVIDVGTSS 233 (278) T ss_pred H---cCCCcEEEEeeccc Confidence 5 57999999997544 |
|
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.55 E-value=0.0076 Score=67.96 Aligned_cols=121 Identities=21% Similarity=0.282 Sum_probs=85.6 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.++.++.. ++.+..++||||+++++-. ++|+.+ T Consensus 153 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~------------~l~~~~~~ADIvI~AvG~p----~~i~~~ 216 (282) T PRK14169 153 DVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR------------NLKQLTKEADILVVAVGVP----HFIGAD 216 (282) T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhhCCEEEEccCCc----CccCHH Confidence 5899999999996 5799999999999999988865432 5889999999999999854 578876 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) . .|+|+++|++|--.+. +|++.| ||-.++- .. ---.+||==||.-.-+..-+.+-+ T Consensus 217 ~---vk~GavVIDvGin~~~----------~gkl~G---DVd~~~v-------~~-~a~~iTPVPGGVGp~T~a~L~~N~ 272 (282) T PRK14169 217 A---VKPGAVVIDVGISRGA----------DGKLLG---DVDEAAV-------AP-IASAITPVPGGVGPMTIASLMAQT 272 (282) T ss_pred H---cCCCcEEEEeeccccC----------CCCeee---cCcHHHH-------Hh-hccEecCCCCCcHHHHHHHHHHHH Confidence 4 5799999999865432 355544 5532211 11 123588877776655554444444 Q ss_pred HH Q psy13054 1112 AE 1113 (1128) Q Consensus 1112 ~~ 1113 (1128) ++ T Consensus 273 ~~ 274 (282) T PRK14169 273 VT 274 (282) T ss_pred HH Confidence 43 |
|
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
---|
Probab=96.54 E-value=0.0052 Score=71.57 Aligned_cols=93 Identities=14% Similarity=0.089 Sum_probs=72.6 Q ss_pred hHHHHHHHhhCCCEEEEEeCCCCc-----hh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCc Q psy13054 968 GLETAKLLKAFKVSKILYTSRRVK-----EE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 1040 (1128) Q Consensus 968 G~~vA~~l~afG~~Vi~~d~~~~~-----~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga 1040 (1128) |.++|..|...|.+|++||++... .. ..+.|++.. +..+++++||+|++++|....++.++. .....+++++ T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~-~L~~~L~~g~ 110 (342) T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK-NILPHLPENA 110 (342) T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH-HHHhhCCCCC Confidence 889999999999999999976541 11 345566644 778899999999999996554777774 6778889999 Q ss_pred EEEEcCCCcccCH-HHHHHHHh Q psy13054 1041 ILVNTSRGGLLDQ-EALVEFLK 1061 (1128) Q Consensus 1041 ~lIN~aRG~lVde-~aL~~aL~ 1061 (1128) ++||++.+..... +.+.+.+. T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342) T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342) T ss_pred EEEEecCCCHHHHHHHHHHHhc Confidence 9999999887655 56666664 |
|
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.50 E-value=0.012 Score=66.44 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=83.7 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.++.++. .+|.+..++||||+.++.-. ++|.++ T Consensus 156 ~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvGkp----~~i~~~ 219 (288) T PRK14171 156 NLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIGSP----LKLTAE 219 (288) T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCC----CccCHH Confidence 5899999999997 579999999999999998886543 25889999999999999843 578875 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) .+ |+|+++|++|=-.+ .+|++.| ||-.++- ... =-.+||==||.-.-+..-+.+-+ T Consensus 220 ~v---k~GavVIDvGin~~----------~~gkl~G---DVd~~~v-------~~~-a~~iTPVPGGVGp~T~a~L~~N~ 275 (288) T PRK14171 220 YF---NPESIVIDVGINRI----------SGNKIIG---DVDFENV-------KSK-VKYITPVPGGIGPMTIAFLLKNT 275 (288) T ss_pred Hc---CCCCEEEEeecccc----------CCCCeEC---CccHHHH-------Hhh-ceEeCCCCCCcHHHHHHHHHHHH Confidence 54 69999999984432 2345443 4421111 000 12578877776655554444433 Q ss_pred HH Q psy13054 1112 AE 1113 (1128) Q Consensus 1112 ~~ 1113 (1128) ++ T Consensus 276 v~ 277 (288) T PRK14171 276 VK 277 (288) T ss_pred HH Confidence 33 |
|
>PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
---|
Probab=96.49 E-value=0.033 Score=67.63 Aligned_cols=135 Identities=16% Similarity=0.229 Sum_probs=88.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCCCchhhhhcC--------------------Ccc-cChHhhhccCCE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEGTALG--------------------AQL-VPLDTLCAESDF 1013 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~~~~~~~~~g--------------------~~~-~~l~ell~~sDv 1013 (1128) .+|+|||+|.+|..+|-.|... |.+|++||....+.+.-..| ... .+.++.++.||+ T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473) T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473) T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE Confidence 4799999999999999999855 68999999766543311101 111 245677899999 Q ss_pred EEEecCCCcc-----------ccccc--CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEe-ccCCCCCC Q psy13054 1014 IFVTCALTKD-----------TEQLI--GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLD-VMIPEPLP 1079 (1128) Q Consensus 1014 V~l~lPlt~~-----------T~~li--~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLD-V~e~EPl~ 1079 (1128) +++|+|.... ...+. -+..-+.++++.++|.-|.-.+=.++.+...|.+.. .|.-.. +|-||=+. T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PErl~ 160 (473) T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPEFLA 160 (473) T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCCccC Confidence 9999973221 11222 123456679999999998888777788888777521 111111 26788776 Q ss_pred CCCcc---ccCCCeEE Q psy13054 1080 ADHPL---VQLDNCVL 1092 (1128) Q Consensus 1080 ~~~pL---~~~pNvil 1092 (1128) +.+.+ ...|.||+ T Consensus 161 ~G~a~~d~~~p~riVi 176 (473) T PLN02353 161 EGTAIEDLFKPDRVLI 176 (473) T ss_pred CCCcccccCCCCEEEE Confidence 66544 44566654 |
|
>PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
---|
Probab=96.44 E-value=0.006 Score=70.31 Aligned_cols=86 Identities=20% Similarity=0.223 Sum_probs=60.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CC-CEEEEEeCCCCchh--hhh---cC--Ccc-cChHhhhccCCEEEEecCCCccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FK-VSKILYTSRRVKEE--GTA---LG--AQL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG-~~Vi~~d~~~~~~~--~~~---~g--~~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) ..++++|||.|.+|+.+++.+.. ++ .+|.+|+++..+.. ..+ .+ +.. .++++++++||+|+.+.|.. T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314) T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314) T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC--- Confidence 46889999999999999985543 44 57889987665544 222 13 333 37888999999998777744 Q ss_pred ccccCHHHHccCCCCcEEEEcC Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .-++.. +.++||+.+.-++ T Consensus 201 ~pvl~~---~~l~~g~~i~~ig 219 (314) T PRK06141 201 EPLVRG---EWLKPGTHLDLVG 219 (314) T ss_pred CCEecH---HHcCCCCEEEeeC Confidence 456765 4568999444444 |
|
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.42 E-value=0.011 Score=66.80 Aligned_cols=78 Identities=19% Similarity=0.293 Sum_probs=65.2 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.+++++.. ++.+..++||+|+.+++-. ++|..+ T Consensus 156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~------------~l~~~~~~ADIvIsAvGk~----~~i~~~ 219 (284) T PRK14177 156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ------------NLPSIVRQADIIVGAVGKP----EFIKAD 219 (284) T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEeCCCc----CccCHH Confidence 5899999999996 6799999999999999998875432 5788999999999999844 578765 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) . .|+|+++|++|--. T Consensus 220 ~---ik~gavVIDvGin~ 234 (284) T PRK14177 220 W---ISEGAVLLDAGYNP 234 (284) T ss_pred H---cCCCCEEEEecCcc Confidence 4 47999999998543 |
|
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.42 E-value=0.015 Score=66.13 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=87.7 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.++.++. .++.+..++||+|+.+++-. ++++.+ T Consensus 155 ~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGkp----~~i~~~ 218 (297) T PRK14186 155 DIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGRP----NLIGAE 218 (297) T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCc----CccCHH Confidence 5899999999996 579999999999999998886433 26889999999999999944 578865 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) . .|+|+++|++|--.+.|.. ++|++.| ||-.++ .... --.+||--||.-.-+..-+.+-+ T Consensus 219 ~---ik~gavVIDvGin~~~~~~------~~gkl~G---Dvd~~~-------v~~~-a~~iTPVPGGVGp~T~a~L~~Nl 278 (297) T PRK14186 219 M---VKPGAVVVDVGIHRLPSSD------GKTRLCG---DVDFEE-------VEPV-AAAITPVPGGVGPMTVTMLLVNT 278 (297) T ss_pred H---cCCCCEEEEeccccccccc------cCCceeC---CccHHH-------HHhh-ceEecCCCCCchHHHHHHHHHHH Confidence 5 4799999999866643221 2455544 443211 1111 23589998887665554444444 Q ss_pred HHH Q psy13054 1112 AEN 1114 (1128) Q Consensus 1112 ~~n 1114 (1128) ++- T Consensus 279 ~~a 281 (297) T PRK14186 279 VLS 281 (297) T ss_pred HHH Confidence 433 |
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>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
---|
Probab=96.38 E-value=0.016 Score=63.83 Aligned_cols=108 Identities=21% Similarity=0.301 Sum_probs=71.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC---------Cchh---h-hhcC-------CcccChHhhh-ccC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR---------VKEE---G-TALG-------AQLVPLDTLC-AES 1011 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~---------~~~~---~-~~~g-------~~~~~l~ell-~~s 1011 (1128) ++.|++|.|.|+|++|+.+|+.|..+|++|+++.+.. +..+ . ...+ .+..+.++++ .+| T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~~ 107 (227) T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELDC 107 (227) T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeecc Confidence 5899999999999999999999999999999554331 1111 1 1111 1223334433 367 Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ||++-|.+. +.|+.+...+++ =.+++--+-+.+ . ..-.+.|+++.+..+ T Consensus 108 Dvlip~a~~-----~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~~~ 156 (227) T cd01076 108 DILIPAALE-----NQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVLVV 156 (227) T ss_pred cEEEecCcc-----CccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCEEE Confidence 888877653 467888888886 455556666665 4 555677887777554 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=96.37 E-value=0.011 Score=66.89 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=65.7 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.+++.+. .++.+..++||+|+.+++-. +++.++ T Consensus 157 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGkp----~~i~~~ 220 (294) T PRK14187 157 NLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGIP----NFVKYS 220 (294) T ss_pred CCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCc----CccCHH Confidence 5899999999996 579999999999999999887543 25789999999999999844 578876 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) .+ |+|+++|++|--. T Consensus 221 ~i---k~gaiVIDVGin~ 235 (294) T PRK14187 221 WI---KKGAIVIDVGINS 235 (294) T ss_pred Hc---CCCCEEEEecccc Confidence 55 6999999998554 |
|
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
---|
Probab=96.31 E-value=0.011 Score=66.14 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=87.4 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) +++||++.|||-++ +|++++..|..-+++|.++.++.. ++.+..++||||++++-.. ++|.++ T Consensus 153 ~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~------------~l~~~~k~ADIvv~AvG~p----~~i~~d 216 (283) T COG0190 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTK------------DLASITKNADIVVVAVGKP----HFIKAD 216 (283) T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCC------------CHHHHhhhCCEEEEecCCc----cccccc Confidence 68999999999986 499999999999999999875542 5778899999999998744 677643 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) ..|+|+++|+++--.+-+ +++.| ||-..+ .....--+||=-||.-.-+..-+.+-+ T Consensus 217 ---~vk~gavVIDVGinrv~~----------~kl~G---DVdf~~--------v~~~a~~iTPVPGGVGPmTvamLl~Nt 272 (283) T COG0190 217 ---MVKPGAVVIDVGINRVND----------GKLVG---DVDFDS--------VKEKASAITPVPGGVGPMTVAMLLENT 272 (283) T ss_pred ---cccCCCEEEecCCccccC----------CceEe---eccHHH--------HHHhhcccCCCCCccCHHHHHHHHHHH Confidence 458999999998766544 56644 553222 222334588888887776654443333 |
|
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
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Probab=96.30 E-value=0.013 Score=66.60 Aligned_cols=132 Identities=18% Similarity=0.221 Sum_probs=89.6 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|++|.++..+.. ++++..++||+|+.++.-. ++|..+ T Consensus 164 ~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~------------nl~~~~~~ADIvv~AvGk~----~~i~~~ 227 (299) T PLN02516 164 PIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP------------DPESIVREADIVIAAAGQA----MMIKGD 227 (299) T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEcCCCc----CccCHH Confidence 5899999999997 5799999999999999998865432 5789999999999998743 688865 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~ 1110 (1128) . .|+|+++|++|--.+-|. ...+| ++ .=||-.++- ...--.+||=-||.-.-+..-+.+- T Consensus 228 ~---vk~gavVIDvGin~~~~~-----~~~~g~kl---~GDvd~e~v--------~~~a~~iTPVPGGVGp~T~a~L~~N 288 (299) T PLN02516 228 W---IKPGAAVIDVGTNAVSDP-----SKKSGYRL---VGDVDFAEV--------SKVAGWITPVPGGVGPMTVAMLLKN 288 (299) T ss_pred H---cCCCCEEEEeeccccCcc-----cccCCCce---EcCcChHHh--------hhhceEecCCCCCchHHHHHHHHHH Confidence 5 479999999985543221 11123 33 235532111 1111248998777766666555555 Q ss_pred HHHHHHHHH Q psy13054 1111 SAENIIRGY 1119 (1128) Q Consensus 1111 ~~~nl~~~l 1119 (1128) +++-.++++ T Consensus 289 ~v~a~~~~~ 297 (299) T PLN02516 289 TVDGAKRVF 297 (299) T ss_pred HHHHHHHHh Confidence 555445544 |
|
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
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Probab=96.25 E-value=0.011 Score=63.00 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=62.9 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc----CCc-----c---cChHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL----GAQ-----L---VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~----g~~-----~---~~l~ell~~sDvV~l~ 1017 (1128) .+.++++.|+|. |.+|+.+++.|...|.+|++++++..+.. .... +.. . .++.+.++++|+|+.+ T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194) T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194) T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC Confidence 367899999995 99999999999999999998876544322 1111 111 1 1234678889999988 Q ss_pred cCCCcccccccCHHHHccCCCCcEEEEcCCCcccC Q psy13054 1018 CALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 (1128) Q Consensus 1018 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVd 1052 (1128) .|....+ .+. .-...+++.+++++.+...++ T Consensus 105 t~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~ 135 (194) T cd01078 105 GAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVG 135 (194) T ss_pred CCCCcee--chh--hhcccCceeEEEEccCCCCCC Confidence 8866541 111 111234567777777666553 |
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
---|
Probab=96.25 E-value=0.0075 Score=68.95 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=59.3 Q ss_pred cCCccc-CHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEe Q psy13054 307 LGAQLV-PLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381 (1128) Q Consensus 307 ~g~~~v-sLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLD 381 (1128) .|++.. +.++++++ ||+|++++|-.+.++.+++ +.+..+++|.++|+++.....+..++.+.+++..+. -+| T Consensus 42 ~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd 117 (299) T PRK12490 42 LGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD 117 (299) T ss_pred CCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe Confidence 344443 88999877 6999999998878888884 567789999999999999999999999999886653 356 |
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>PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
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Probab=96.24 E-value=0.012 Score=68.11 Aligned_cols=96 Identities=22% Similarity=0.387 Sum_probs=70.5 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHh-hCCC-EEEEEeCCCCchh--hhhcC-CcccChHhhhccCCEEEEecCCCccccc Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLK-AFKV-SKILYTSRRVKEE--GTALG-AQLVPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~-afG~-~Vi~~d~~~~~~~--~~~~g-~~~~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .+.||+|.|+|. |.||+.+++.|. ..|. +++++++...+.. ..+.+ ....++++.+.++|+|+.+.... .. T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~---~~ 228 (340) T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP---KG 228 (340) T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC---cC Confidence 478999999999 899999999996 4564 7778875443332 22222 23357889999999988655432 24 Q ss_pred -ccCHHHHccCCCCcEEEEcCCCcccCHH Q psy13054 1027 -LIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 (1128) Q Consensus 1027 -li~~~~l~~mk~ga~lIN~aRG~lVde~ 1054 (1128) +++++.+ +++.++|+.|+..=||.+ T Consensus 229 ~~I~~~~l---~~~~~viDiAvPRDVd~~ 254 (340) T PRK14982 229 VEIDPETL---KKPCLMIDGGYPKNLDTK 254 (340) T ss_pred CcCCHHHh---CCCeEEEEecCCCCCCcc Confidence 4787644 799999999999988753 |
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>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=96.24 E-value=0.013 Score=66.26 Aligned_cols=77 Identities=26% Similarity=0.393 Sum_probs=64.6 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhh----CCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKA----FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~a----fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) ++.||++.|||-+ .+|+++|.+|.. -+++|..++.+. .++.+.+++||+|+.+++. .++ T Consensus 154 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG~----p~l 217 (286) T PRK14184 154 SPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIGR----PRF 217 (286) T ss_pred CCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCc Confidence 5899999999997 579999999988 789988886432 2688999999999999963 367 Q ss_pred cCHHHHccCCCCcEEEEcCCC Q psy13054 1028 IGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG 1048 (1128) |.++.+ |+|+++|++|=- T Consensus 218 i~~~~v---k~GavVIDVGi~ 235 (286) T PRK14184 218 VTADMV---KPGAVVVDVGIN 235 (286) T ss_pred CCHHHc---CCCCEEEEeeee Confidence 888777 899999999843 |
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>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=96.23 E-value=0.016 Score=65.46 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=65.5 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.++.++.. ++.+..++||+|+.+++- .++|..+ T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~------------nl~~~~~~ADIvI~AvGk----~~~i~~~ 217 (282) T PRK14182 154 DPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTA------------DLAGEVGRADILVAAIGK----AELVKGA 217 (282) T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC------------CHHHHHhhCCEEEEecCC----cCccCHH Confidence 5899999999996 5799999999999999998865432 578899999999999984 3578876 Q ss_pred HHccCCCCcEEEEcCCCcc Q psy13054 1032 QFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l 1050 (1128) .+ |+|+++|++|--.+ T Consensus 218 ~i---k~gaiVIDvGin~~ 233 (282) T PRK14182 218 WV---KEGAVVIDVGMNRL 233 (282) T ss_pred Hc---CCCCEEEEeeceec Confidence 54 69999999985553 |
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>TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
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Probab=96.22 E-value=0.02 Score=64.43 Aligned_cols=106 Identities=16% Similarity=0.153 Sum_probs=72.3 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc---C-CcccChHhh-hccCCEEEEecCCC--ccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL---G-AQLVPLDTL-CAESDFIFVTCALT--KDT 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~---g-~~~~~l~el-l~~sDvV~l~lPlt--~~T 1024 (1128) ..+++++|+|.|.+|++++..+...|++|.++++...+.+ .... + ....++++. +.++|+|++++|.. ++. T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270) T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270) T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC Confidence 4678999999999999999999999999999986654433 1111 2 122345543 35899999999975 222 Q ss_pred cc-ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC Q psy13054 1025 EQ-LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1025 ~~-li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128) .. .++ .+.++++.+++++.-... ++ .|++..++.. T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~G 230 (270) T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSLG 230 (270) T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHCC Confidence 11 223 345788999999987665 33 4666655543 |
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
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Probab=96.21 E-value=0.018 Score=64.44 Aligned_cols=124 Identities=21% Similarity=0.212 Sum_probs=76.4 Q ss_pred HHHHHhhCC--CEEEEEeCCCCchh-hhhcCCccc--ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEc Q psy13054 971 TAKLLKAFK--VSKILYTSRRVKEE-GTALGAQLV--PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 971 vA~~l~afG--~~Vi~~d~~~~~~~-~~~~g~~~~--~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) +|+.|+..| .+|++||++..... +.+.|+... +-.+.++++|+|++|+|. ..+..++. +.-..+++|++++++ T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l~-~~~~~~~~~~iv~Dv 78 (258) T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVLE-EIAPYLKPGAIVTDV 78 (258) T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHHH-HHHCGS-TTSEEEE- T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHHH-HhhhhcCCCcEEEEe Confidence 467777767 89999997766554 445666432 225789999999999994 44555663 455668999999999 Q ss_pred CCCcccCHHHHHHHHhcCCceEEEEe-ccCCC---CCCCCCccccCCCeEECCCCC Q psy13054 1046 SRGGLLDQEALVEFLKDKKIGGAGLD-VMIPE---PLPADHPLVQLDNCVLTPHTS 1097 (1128) Q Consensus 1046 aRG~lVde~aL~~aL~~g~i~gaaLD-V~e~E---Pl~~~~pL~~~pNvilTPHia 1097 (1128) +.-+.--.+++.+.+.. .....+.= -|-+| |..++..|+.-.|+++||+-. T Consensus 79 ~SvK~~~~~~~~~~~~~-~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258) T PF02153_consen 79 GSVKAPIVEAMERLLPE-GVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258) T ss_dssp -S-CHHHHHHHHHHHTS-SGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT T ss_pred CCCCHHHHHHHHHhcCc-ccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC Confidence 98887666677776662 22222221 12222 222355788888999999966 |
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
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Probab=96.20 E-value=0.016 Score=66.87 Aligned_cols=126 Identities=14% Similarity=0.217 Sum_probs=85.2 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.++..+.. ++.+..++||||+.+++-. ++++.+ T Consensus 211 ~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~------------nl~~~~~~ADIvIsAvGkp----~~v~~d 274 (345) T PLN02897 211 EIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTK------------DPEQITRKADIVIAAAGIP----NLVRGS 274 (345) T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCC------------CHHHHHhhCCEEEEccCCc----CccCHH Confidence 5899999999997 5799999999999999988865432 5788999999999999844 578865 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~ 1110 (1128) .+ |+|+++|++|--.+-+.. =+.| ++. =||..++-.+. --.+||==||.-.-+..-+.+- T Consensus 275 ~v---k~GavVIDVGin~~~~~~-----~~~g~klv---GDVdfe~v~~~--------as~iTPVPGGVGpmTvamLm~N 335 (345) T PLN02897 275 WL---KPGAVVIDVGTTPVEDSS-----CEFGYRLV---GDVCYEEALGV--------ASAITPVPGGVGPMTITMLLCN 335 (345) T ss_pred Hc---CCCCEEEEcccccccccc-----ccCCCeeE---ecccHHHHHhh--------ccccCCCCCchhHHHHHHHHHH Confidence 54 699999999865432110 0124 443 36643322110 1247888777665555444443 Q ss_pred HHH Q psy13054 1111 SAE 1113 (1128) Q Consensus 1111 ~~~ 1113 (1128) +++ T Consensus 336 ~~~ 338 (345) T PLN02897 336 TLD 338 (345) T ss_pred HHH Confidence 333 |
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>PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
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Probab=96.19 E-value=0.011 Score=67.85 Aligned_cols=88 Identities=8% Similarity=0.070 Sum_probs=65.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CCC-EEEEEeCCCCchh--hhhc---CCc--ccChHhhhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FKV-SKILYTSRRVKEE--GTAL---GAQ--LVPLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG~-~Vi~~d~~~~~~~--~~~~---g~~--~~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) ..++++|||.|.+|+..++.+.. ++. +|.+|+++..+.. ..+. +.. ..+++++++++|+|+.+.|.++ T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--- 200 (304) T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--- 200 (304) T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC--- Confidence 56899999999999999999864 564 6788877665543 2221 222 2378899999999999999553 Q ss_pred cccCHHHHccCCCCcEEEEcCCCc Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) -+|+. .+|||+.++++|.-. T Consensus 201 Pl~~~----~~~~g~hi~~iGs~~ 220 (304) T PRK07340 201 PVYPE----AARAGRLVVAVGAFT 220 (304) T ss_pred ceeCc----cCCCCCEEEecCCCC Confidence 56764 369999999998543 |
|
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=96.18 E-value=0.016 Score=65.99 Aligned_cols=78 Identities=17% Similarity=0.271 Sum_probs=64.5 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhh----CCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKA----FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~a----fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) ++.||++.|||-+ .+|+++|.+|.. -|++|....... .++.+.+++||+|+.+++.. ++ T Consensus 156 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~----~l 219 (295) T PRK14174 156 ETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA----RF 219 (295) T ss_pred CCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc----Cc Confidence 5899999999996 579999999976 578887775332 25889999999999999643 68 Q ss_pred cCHHHHccCCCCcEEEEcCCCc Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) |.++.+ |+|+++|++|=-. T Consensus 220 i~~~~v---k~GavVIDVgi~~ 238 (295) T PRK14174 220 ITADMV---KPGAVVIDVGINR 238 (295) T ss_pred cCHHHc---CCCCEEEEeeccc Confidence 998887 9999999998544 |
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>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=96.17 E-value=0.0061 Score=69.60 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=58.0 Q ss_pred cCHHHHhhcCCEEEEecCCCcccccccCH--HHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec Q psy13054 312 VPLDTLCAESDFIFVTCALTKDTEQLIGR--KQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128) Q Consensus 312 vsLdeLl~~SDiVslh~PLT~~T~~lIn~--~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128) .+..+++++||+|++++|-....+..+.. ..+..+++|.++||++.+.......+.+.+++..+. -+|. T Consensus 49 ~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296) T PRK15461 49 ASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296) T ss_pred CCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc Confidence 48899999999999999988777777643 356789999999999999999999999999987654 3553 |
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>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.16 E-value=0.018 Score=65.08 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=64.7 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|++|.++.++.. ++.+..++||+|+.+++-. ++|+++ T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~------------dl~~~~k~ADIvIsAvGkp----~~i~~~ 218 (282) T PRK14180 155 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT------------DLKSHTTKADILIVAVGKP----NFITAD 218 (282) T ss_pred CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC------------CHHHHhhhcCEEEEccCCc----CcCCHH Confidence 5899999999996 5799999999999999998864432 6778899999999999844 568865 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) . .|+|+++|++|--. T Consensus 219 ~---vk~gavVIDvGin~ 233 (282) T PRK14180 219 M---VKEGAVVIDVGINH 233 (282) T ss_pred H---cCCCcEEEEecccc Confidence 4 47999999998433 |
|
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
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Probab=96.15 E-value=0.014 Score=67.59 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=63.6 Q ss_pred CCeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCCCchh-h-h---hcCCc---ccChHhhhccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEE-G-T---ALGAQ---LVPLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~~~~~-~-~---~~g~~---~~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) -+++||||.|.+|+..++.+... .-+|.+||++.++.. . . +.+.. ..+.++++++||+|+.|.|.. . T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325) T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325) T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C Confidence 47899999999999877665432 357888887766643 1 1 33432 247999999999999999853 3 Q ss_pred cccCHHHHccCCCCcEEEEcCCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) -+++.+ .+|||+.+.++|.- T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325) T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325) T ss_pred cEecHH---HcCCCCEEEecCCC Confidence 567654 45999999999853 |
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=96.15 E-value=0.018 Score=65.13 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=64.9 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhC----CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAF----KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~af----G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) ++.||++.|||-+ .+|+++|.+|..- ++.|.++.++. .++.+.+++||+|+.+++-. ++ T Consensus 150 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~p----~~ 213 (287) T PRK14181 150 PLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGVP----LF 213 (287) T ss_pred CCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCc----Cc Confidence 5899999999997 5799999999877 78888876433 25889999999999999844 57 Q ss_pred cCHHHHccCCCCcEEEEcCCCcc Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) +.++.+ |+|+++||+|--.+ T Consensus 214 i~~~~i---k~GavVIDvGin~~ 233 (287) T PRK14181 214 IKEEMI---AEKAVIVDVGTSRV 233 (287) T ss_pred cCHHHc---CCCCEEEEeccccc Confidence 887654 69999999986553 |
|
>PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
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Probab=96.09 E-value=0.012 Score=70.27 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=62.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC-Cccc---ChHhhhccCCEEEEecCCCcccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG-AQLV---PLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g-~~~~---~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .+.|+++.|||.|.+|+.+++.|...|. ++.++++...+.. +...+ .... ++.+++.++|+|+.|.+... T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~--- 254 (414) T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE--- 254 (414) T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC--- Confidence 5789999999999999999999999996 6777776655543 33333 3333 45677899999999988543 Q ss_pred cccCHHHHccCCCCcEEEEcCCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) .+|..+... .+.-++|+.|=. T Consensus 255 ~vi~~~~~~--~~~~~~iDLavP 275 (414) T PRK13940 255 YIVTCKYVG--DKPRVFIDISIP 275 (414) T ss_pred eeECHHHhC--CCCeEEEEeCCC Confidence 355654432 122345554433 |
|
>PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
---|
Probab=96.09 E-value=0.064 Score=61.72 Aligned_cols=108 Identities=21% Similarity=0.202 Sum_probs=73.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc--------------cChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL--------------VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~--------------~~l~ell~~sDvV~l~lPlt~ 1022 (1128) .+|+|||.|.||..+|..|...|.+|.++.+.. .......|.+. .+..+....+|+|++++|.. T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313) T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313) T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC- Confidence 579999999999999999999999999987654 22222222211 12223467899999999944 Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ++...+. ..-...++++.+|...-| +-.++.|.+.+...++.++ T Consensus 84 ~~~~~~~-~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313) T PRK06249 84 ANALLAP-LIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313) T ss_pred ChHhHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE Confidence 3443332 233445778888888776 4567778888877676554 |
|
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
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Probab=96.08 E-value=0.019 Score=66.50 Aligned_cols=78 Identities=19% Similarity=0.328 Sum_probs=65.3 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+ .+|+++|.+|..-|+.|.++..+. .++.+..++||||+.++.-. ++|+++ T Consensus 228 ~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvGkp----~~i~~d 291 (364) T PLN02616 228 EIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVGQP----NMVRGS 291 (364) T ss_pred CCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCCCc----CcCCHH Confidence 5899999999996 579999999999999999886443 26889999999999999844 578876 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) .+ |+|+++|++|=-. T Consensus 292 ~v---K~GAvVIDVGIn~ 306 (364) T PLN02616 292 WI---KPGAVVIDVGINP 306 (364) T ss_pred Hc---CCCCEEEeccccc Confidence 54 7999999998554 |
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>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=96.08 E-value=0.02 Score=64.65 Aligned_cols=119 Identities=21% Similarity=0.317 Sum_probs=85.7 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhh--CCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccC Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKA--FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~a--fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) ++.||++.|||-+ .+|+++|.+|.. -++.|.++..+. .++.+..++||+|+.+++-. ++|. T Consensus 155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGkp----~~i~ 218 (284) T PRK14193 155 ELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGVA----HLVT 218 (284) T ss_pred CCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCCc----CccC Confidence 5899999999996 679999999987 799998886432 26889999999999999854 5788 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHH Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~ 1109 (1128) .+.+ |+|+++|++|--.+ .+|++.| ||- .+ ..... -.+||-=||.-.-+..-+.+ T Consensus 219 ~~~i---k~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a-~~iTPVPGGVGp~T~a~L~~ 273 (284) T PRK14193 219 ADMV---KPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVA-GAVSPNPGGVGPMTRAFLLT 273 (284) T ss_pred HHHc---CCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhC-CEEeCCCCChhHHHHHHHHH Confidence 7654 69999999996664 3455544 554 21 11111 25899988876655544443 Q ss_pred HHH Q psy13054 1110 TSA 1112 (1128) Q Consensus 1110 ~~~ 1112 (1128) -++ T Consensus 274 N~~ 276 (284) T PRK14193 274 NVV 276 (284) T ss_pred HHH Confidence 333 |
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>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
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Probab=96.07 E-value=0.0094 Score=72.54 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=51.0 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhh--hccCCEEEEecCCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTL--CAESDFIFVTCALT 1021 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~el--l~~sDvV~l~lPlt 1021 (1128) +.+++++|+|.|.+|++++..+...|++|.++++...+.+ ....+....+++++ +.++|+|++|+|.. T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477) T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477) T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC Confidence 6789999999999999999999999999998876544333 22222223334433 57899999999965 |
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>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
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Probab=96.00 E-value=0.087 Score=57.62 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=71.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC----------chh--hhhc-CCcc------cChHhhh-ccCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV----------KEE--GTAL-GAQL------VPLDTLC-AESD 1012 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~----------~~~--~~~~-g~~~------~~l~ell-~~sD 1012 (1128) ++.|++|.|.|+|++|+.+|+.|...|++|+...+... ... ..+. ++.. .+-++++ ..|| T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D 99 (217) T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVD 99 (217) T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecccc Confidence 47899999999999999999999999998777654443 111 1111 1111 1223433 3689 Q ss_pred EEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1013 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) |++-|.+.+ .|+.+....++ =.+++--+.+.+-+ .-.+.|++..+.. T Consensus 100 VlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~v 146 (217) T cd05211 100 IFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIVV 146 (217) T ss_pred EEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcEE Confidence 999887744 78888888887 55566667777654 3456666665544 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
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Probab=95.92 E-value=0.0084 Score=62.31 Aligned_cols=89 Identities=13% Similarity=0.228 Sum_probs=53.8 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccccC------chhhhHHHHHhhc-------CCChhhhhhhhH-HHH Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG------QLFSLVYDFCRYS-------IGGVTIKRLVKK-TFI 767 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~~~------~~~~~~~~la~~~-------pg~~~t~~l~~~-~~l 767 (1128) ++|||||+|++|+.+|++|..-|.+|.+||+.+.+.+. .....+.++++.| |..++++.++.. +++ T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163) T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163) T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh Confidence 58999999999999999999999999999965433211 1111277777776 777777766543 244 Q ss_pred HHhcceEEeeeeecccCCCcchhccc Q psy13054 768 LSFGGLVVTVLHVHIGDLPAESFEDQ 793 (1128) Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1128) ..++.-.+- +-+++++++.-.++ T Consensus 82 ~~l~~g~ii---id~sT~~p~~~~~~ 104 (163) T PF03446_consen 82 AGLRPGKII---IDMSTISPETSREL 104 (163) T ss_dssp GGS-TTEEE---EE-SS--HHHHHHH T ss_pred hccccceEE---EecCCcchhhhhhh Confidence 444221111 23566666655543 |
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
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Probab=95.91 E-value=0.015 Score=62.69 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=68.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC---Cchh-----hhhcC-----------------Ccc----- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR---VKEE-----GTALG-----------------AQL----- 1001 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~---~~~~-----~~~~g-----------------~~~----- 1001 (1128) .|..++|+|||.|.+|..+|+.|...|. +++++|... ++.. ..+.| +.. T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200) T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200) T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee Confidence 5888999999999999999999999998 688888761 1100 00000 110 Q ss_pred ----cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEc Q psy13054 1002 ----VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1002 ----~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) ..++++++.+|+|+-+ ..+++++.++..+....++...++... T Consensus 98 ~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~ 144 (200) T TIGR02354 98 KITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAAS 144 (200) T ss_pred eCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEe Confidence 1245678899999988 689999999988888888877777643 |
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
>PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
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Probab=95.90 E-value=0.014 Score=65.34 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=64.1 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCchhhhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCH Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKEEGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~~~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ..+|||||+|+||.++++.+..-| -++++++++..+ .+... .+..+++.++|+|++++| ...++.++.. T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~ 76 (260) T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE 76 (260) T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH Confidence 468999999999999999998665 247777754332 12222 367788899999999988 5556666542 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) .-..++++ .+|.+.-| +..+.+.+.+.. T Consensus 77 -i~~~l~~~-~iIS~~aG--i~~~~l~~~~~~ 104 (260) T PTZ00431 77 -IKPYLGSK-LLISICGG--LNLKTLEEMVGV 104 (260) T ss_pred -HHhhccCC-EEEEEeCC--ccHHHHHHHcCC Confidence 22344444 55666555 345656655543 |
|
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
---|
Probab=95.85 E-value=0.079 Score=59.17 Aligned_cols=156 Identities=15% Similarity=0.054 Sum_probs=94.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC--------chh-h------h-hc------------CCcccCh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--------KEE-G------T-AL------------GAQLVPL 1004 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~--------~~~-~------~-~~------------g~~~~~l 1004 (1128) ++.|+||.|-|+|++|+.+|+.|..+|++|+++.+... ..+ . . .. +.+..+- T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~ 114 (254) T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEG 114 (254) T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCC Confidence 58999999999999999999999999999995533110 000 0 0 00 2334455 Q ss_pred Hhhh-ccCCEEEEecCCCcccccccCHHHHccCC--CCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC Q psy13054 1005 DTLC-AESDFIFVTCALTKDTEQLIGRKQFSLMK--PTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128) Q Consensus 1005 ~ell-~~sDvV~l~lPlt~~T~~li~~~~l~~mk--~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128) ++++ ..|||++-| .+.+.|+++...+++ .=.+++--+-+.+-+ +--+.|.++.|..+ =|+.-+-=--.- T Consensus 115 ~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~vv-PD~laNaGGViv 186 (254) T cd05313 115 KKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVLFA-PGKAANAGGVAV 186 (254) T ss_pred cchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcEEE-CchhhcCCCeee Confidence 5543 469999866 366789999888885 455677777777644 45577877776554 232222100000 Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHH Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGY 1119 (1128) Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l 1119 (1128) +-+=-..| .-|..|.-++..+++.+.+.+...+.+ T Consensus 187 s~~E~~qn---~~~~~w~~e~V~~~l~~~m~~~~~~v~ 221 (254) T cd05313 187 SGLEMSQN---SQRLSWTAEEVDAKLKDIMKNIHDACA 221 (254) T ss_pred eHHHhhcc---cccccCCHHHHHHHHHHHHHHHHHHHH Confidence 00000112 224456667777777776666655443 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
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Probab=95.83 E-value=0.018 Score=68.09 Aligned_cols=98 Identities=21% Similarity=0.252 Sum_probs=70.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcCCcccC---hHhhhccCCEEEEecCCCccccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALGAQLVP---LDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g~~~~~---l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) +|.++++.|||+|.||.-+|+.|...| .+|++.++...+.. +...+..+.+ +.+.+.++|+|+.+.. +... T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414) T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414) T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc Confidence 489999999999999999999999999 46777777766665 6677766654 5567899999998754 3344 Q ss_pred ccCHHHHccCC---CCcEEEEcCCCcccCH Q psy13054 1027 LIGRKQFSLMK---PTAILVNTSRGGLLDQ 1053 (1128) Q Consensus 1027 li~~~~l~~mk---~ga~lIN~aRG~lVde 1053 (1128) +|+.+.+...- +.-++|+.|=..-|++ T Consensus 252 ii~~~~ve~a~~~r~~~livDiavPRdie~ 281 (414) T COG0373 252 IITREMVERALKIRKRLLIVDIAVPRDVEP 281 (414) T ss_pred ccCHHHHHHHHhcccCeEEEEecCCCCCCc Confidence 66665444331 1246677665554443 |
|
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=95.80 E-value=0.031 Score=63.46 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=64.0 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhC----CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAF----KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~af----G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) ++.||++.|||-+ .+|+++|.+|..- ++.|.++.++.. ++.+..++||+|+.+++-. ++ T Consensus 154 ~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~------------nl~~~~~~ADIvIsAvGkp----~~ 217 (293) T PRK14185 154 ETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSK------------NLKKECLEADIIIAALGQP----EF 217 (293) T ss_pred CCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCC------------CHHHHHhhCCEEEEccCCc----Cc Confidence 5899999999996 5799999999865 789988864432 6888999999999999844 57 Q ss_pred cCHHHHccCCCCcEEEEcCCCc Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) |.++ ..|+|+++|++|--. T Consensus 218 i~~~---~vk~gavVIDvGin~ 236 (293) T PRK14185 218 VKAD---MVKEGAVVIDVGTTR 236 (293) T ss_pred cCHH---HcCCCCEEEEecCcc Confidence 8764 457999999998654 |
|
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=95.69 E-value=0.037 Score=62.98 Aligned_cols=131 Identities=17% Similarity=0.246 Sum_probs=87.4 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhC----CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAF----KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~af----G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) ++.||++.|||-+ .+|+++|.+|..- ++.|.++.++. .++.+..++||+|+.++.-. ++ T Consensus 158 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvGkp----~~ 221 (297) T PRK14168 158 ETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAGVP----NL 221 (297) T ss_pred CCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecCCc----Cc Confidence 5899999999996 6799999999876 78888875433 25888999999999998743 57 Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC--ceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHH Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK--IGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRD 1105 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~--i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~ 1105 (1128) |+.+. .|+|+++||+|--.+.+. .++|+ +.| ||-.++ .... ---+||=-||.-.-+.. T Consensus 222 i~~~~---ik~gavVIDvGin~~~~~------~~~g~~~~~G---DVdfe~-------v~~~-a~~iTPVPGGVGp~T~a 281 (297) T PRK14168 222 VKPEW---IKPGATVIDVGVNRVGTN------ESTGKAILSG---DVDFDA-------VKEI-AGKITPVPGGVGPMTIA 281 (297) T ss_pred cCHHH---cCCCCEEEecCCCccCcc------ccCCCcceec---cccHHH-------HHhh-ccEecCCCCCchHHHHH Confidence 88655 479999999986553211 12343 323 442110 1111 13488887777666665 Q ss_pred HHHHHHHHHHHHHH Q psy13054 1106 EKSSTSAENIIRGY 1119 (1128) Q Consensus 1106 ~~~~~~~~nl~~~l 1119 (1128) -+.+-+++-.++++ T Consensus 282 ~L~~N~~~a~~~~~ 295 (297) T PRK14168 282 MLMRNTLKSAKFHL 295 (297) T ss_pred HHHHHHHHHHHHHh Confidence 55555555445443 |
|
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
---|
Probab=95.68 E-value=0.0073 Score=58.04 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=58.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) .+.|++|.|||.|.+|.+-++.|...|++|.++.+.....+ .........+++-+..+|+|+.+.+. ++ +++.. T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~-~~i~~~~~~~~~~l~~~~lV~~at~d-~~----~n~~i 77 (103) T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE-GLIQLIRREFEEDLDGADLVFAATDD-PE----LNEAI 77 (103) T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH-TSCEEEESS-GGGCTTESEEEE-SS--HH----HHHHH T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh-hHHHHHhhhHHHHHhhheEEEecCCC-HH----HHHHH Confidence 58999999999999999999999999999999987751111 11111122455678889988876663 33 34555 Q ss_pred HccCCCCcEEEEcC Q psy13054 1033 FSLMKPTAILVNTS 1046 (1128) Q Consensus 1033 l~~mk~ga~lIN~a 1046 (1128) .+..+.-.+++|++ T Consensus 78 ~~~a~~~~i~vn~~ 91 (103) T PF13241_consen 78 YADARARGILVNVV 91 (103) T ss_dssp HHHHHHTTSEEEET T ss_pred HHHHhhCCEEEEEC Confidence 66666667777774 |
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>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
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Probab=95.63 E-value=0.019 Score=62.17 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=61.6 Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc-CCccc--C-hHhhhccCCEEEEecCCCccc Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL-GAQLV--P-LDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~-g~~~~--~-l~ell~~sDvV~l~lPlt~~T 1024 (1128) +.++.|++|.|||.|.+|.+-++.|..+|++|.++++...... ..+. .+++. + -.+.+..+|+|+.+.. .++ T Consensus 4 ~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~-d~~- 81 (205) T TIGR01470 4 FANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATD-DEE- 81 (205) T ss_pred EEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCC-CHH- Confidence 3478999999999999999999999999999999987665332 1111 23221 1 1345677888776544 333 Q ss_pred ccccCHHHHccCCCCcEEEEc Q psy13054 1025 EQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~ 1045 (1128) +|....+..+.-.++||+ T Consensus 82 ---ln~~i~~~a~~~~ilvn~ 99 (205) T TIGR01470 82 ---LNRRVAHAARARGVPVNV 99 (205) T ss_pred ---HHHHHHHHHHHcCCEEEE Confidence 345555556666677775 |
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
>PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
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Probab=95.60 E-value=0.035 Score=64.26 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=60.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .+.|+++.|||+|.||+-+++.|...|. ++++.++........+. ....-+...++|||+.+...|....-++..+ T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~---~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338) T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTV---VREELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338) T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhh---hhhhhhcccCCCEEEEcCCcCCCCCceeeHH Confidence 5789999999999999999999999995 57777655432111110 0011145679999998743344444556666 Q ss_pred HHccCCCCcEEEEcCCCccc Q psy13054 1032 QFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lV 1051 (1128) .++..++ -+||+.|=..=| T Consensus 248 ~~~~~~~-r~~iDLAvPRdI 266 (338) T PRK00676 248 SLADIPD-RIVFDFNVPRTF 266 (338) T ss_pred HHhhccC-cEEEEecCCCCC Confidence 6654332 266666544433 |
|
>PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=95.59 E-value=0.04 Score=65.95 Aligned_cols=155 Identities=15% Similarity=0.079 Sum_probs=90.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC--------ch-h------------------hhhcCCcccChH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--------KE-E------------------GTALGAQLVPLD 1005 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~--------~~-~------------------~~~~g~~~~~l~ 1005 (1128) +|.|+||.|.|+|++|...|+.|..+|++|+++.+... .. . ....+.+..+-+ T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d 304 (444) T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGA 304 (444) T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCc Confidence 48999999999999999999999999999998554111 00 0 001133344555 Q ss_pred hhh-ccCCEEEEecCCCcccccccCHHHHccCCC-Cc-EEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1006 TLC-AESDFIFVTCALTKDTEQLIGRKQFSLMKP-TA-ILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1006 ell-~~sDvV~l~lPlt~~T~~li~~~~l~~mk~-ga-~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) +++ ..|||++-| .+.+.|+++...+++. +. +++--|.+ ++..+|. +.|.++.|.-+ =|+..+-=--.-+ T Consensus 305 ~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~~~-PD~~aNAGGVivs 376 (444) T PRK14031 305 RPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKILYA-PGKAANAGGVSVS 376 (444) T ss_pred ccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcEEe-ChhhccCCCeeee Confidence 553 358888743 4567899999988865 44 45555666 6766665 45555555333 2222211000000 Q ss_pred ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHH Q psy13054 1083 PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRG 1118 (1128) Q Consensus 1083 pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~ 1118 (1128) -+=-..| .-+..|..++..+++.+.+.+...+. T Consensus 377 ~~E~~qn---~~~~~W~~eeV~~~L~~~m~~~~~~v 409 (444) T PRK14031 377 GLEMTQN---SIKLSWSSEEVDEKLKSIMKNIHEAC 409 (444) T ss_pred hhhhhcc---ccccCCCHHHHHHHHHHHHHHHHHHH Confidence 0101122 23455667777777766666555443 |
|
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
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Probab=95.58 E-value=0.026 Score=65.19 Aligned_cols=86 Identities=27% Similarity=0.331 Sum_probs=60.7 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-------ChHhhhccCCEEEEecCCCccccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-------PLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-------~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .|++|+|+|+|-.|..-.+.++++|++|+++|...++.+ ++++|...+ .++++-+.+|+|+.+.| . .| T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-~~-- 241 (339) T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-AT-- 241 (339) T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-hh-- Confidence 589999999999999999999999999999998887765 666665432 12333333777777777 3 22 Q ss_pred ccCHHHHccCCCCcEEEEcC Q psy13054 1027 LIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~a 1046 (1128) + ...++.+|++..++-++ T Consensus 242 -~-~~~l~~l~~~G~~v~vG 259 (339) T COG1064 242 -L-EPSLKALRRGGTLVLVG 259 (339) T ss_pred -H-HHHHHHHhcCCEEEEEC Confidence 2 24555666665555543 |
|
>TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
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Probab=95.52 E-value=0.038 Score=64.10 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=64.2 Q ss_pred CCCeEEEEEcChhhHHHHHHHh-hCCC-EEEEEeCCCCchh--hhh----cCCcc---cChHhhhccCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLK-AFKV-SKILYTSRRVKEE--GTA----LGAQL---VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~-afG~-~Vi~~d~~~~~~~--~~~----~g~~~---~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) ..++++|||.|.+|+..++.+. ..+. +|.+|+++..+.+ ... .++.. .++++.+++||+|+.+.|..+ T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~- 206 (326) T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET- 206 (326) T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC- Confidence 3578999999999999999986 4674 6788887766544 221 24432 368899999999999988643 Q ss_pred cccccCHHHHccCCCCcEEEEcCC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) -+|..+. +|+|+.+..++- T Consensus 207 --p~i~~~~---l~~g~~i~~vg~ 225 (326) T TIGR02992 207 --PILHAEW---LEPGQHVTAMGS 225 (326) T ss_pred --cEecHHH---cCCCcEEEeeCC Confidence 5676554 689998887763 |
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=95.51 E-value=0.045 Score=62.29 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=82.6 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhC----CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAF----KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~af----G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) ++.||++.|||-+ .+|+++|.+|..- ++.|.++.++. .++.+..++||+|+.++.-. ++ T Consensus 154 ~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGkp----~~ 217 (297) T PRK14167 154 DTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGVP----EL 217 (297) T ss_pred CCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCCc----Cc Confidence 5899999999996 5799999999765 88988875433 25889999999999988744 47 Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHH Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~ 1106 (1128) |+.+. .|+|+++|++|--.+-+.. ++| ++.| ||-.++- ... ---+||=-||.-.-+..- T Consensus 218 i~~~~---ik~gaiVIDvGin~~~~~~------~~g~kl~G---DVd~e~v-------~~~-a~~iTPVPGGVGpvT~a~ 277 (297) T PRK14167 218 IDGSM---LSEGATVIDVGINRVDADT------EKGYELVG---DVEFESA-------KEK-ASAITPVPGGVGPMTRAM 277 (297) T ss_pred cCHHH---cCCCCEEEEccccccCccc------ccCCceee---cCcHHHH-------Hhh-ceEecCCCCCchHHHHHH Confidence 88644 5799999999855432110 124 4433 5532211 111 134888877766555544 Q ss_pred HHHHHH Q psy13054 1107 KSSTSA 1112 (1128) Q Consensus 1107 ~~~~~~ 1112 (1128) +.+-++ T Consensus 278 L~~N~~ 283 (297) T PRK14167 278 LLYNTV 283 (297) T ss_pred HHHHHH Confidence 444333 |
|
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
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Probab=95.49 E-value=0.016 Score=62.60 Aligned_cols=94 Identities=23% Similarity=0.324 Sum_probs=63.7 Q ss_pred eEEEEEcChhhHHHHHHHhh--CCC-EEEEEeCCCCchh--hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 958 TVGIVGLGNIGLETAKLLKA--FKV-SKILYTSRRVKEE--GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~a--fG~-~Vi~~d~~~~~~~--~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) +|||||+|.||+.+.+.++. .++ .+.+||+..++.. ....+... .+++|++++.|+|+=|..- +..+ .- T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~----e~ 76 (255) T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVR----EY 76 (255) T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHH----HH Confidence 69999999999999999983 123 3567776665554 22233322 4799999999999977662 2222 23 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEAL 1056 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL 1056 (1128) ..+.+|.|-=+|=+|-|.+.|+.-+ T Consensus 77 ~~~~L~~g~d~iV~SVGALad~~l~ 101 (255) T COG1712 77 VPKILKAGIDVIVMSVGALADEGLR 101 (255) T ss_pred hHHHHhcCCCEEEEechhccChHHH Confidence 3455666777777788888866543 |
|
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
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Probab=95.39 E-value=0.021 Score=55.51 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=47.1 Q ss_pred eEEEEEcChhhHHHHHHHhhC--CCEEEE-EeCCCCchh--hhhcCCcc-cChHhhhc--cCCEEEEecCC Q psy13054 958 TVGIVGLGNIGLETAKLLKAF--KVSKIL-YTSRRVKEE--GTALGAQL-VPLDTLCA--ESDFIFVTCAL 1020 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~af--G~~Vi~-~d~~~~~~~--~~~~g~~~-~~l~ell~--~sDvV~l~lPl 1020 (1128) ++||||+|.+|+.....+... ++++++ +|+...+.. ....++.. .+++++++ +.|+|+++.|. T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120) T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120) T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC Confidence 699999999999999888766 667664 555443333 34456653 48999998 78999999995 |
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
>PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
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Probab=95.39 E-value=0.056 Score=61.48 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=51.3 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC-----Ccc---cChHhhhccCCEEEEecCCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG-----AQL---VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g-----~~~---~~l~ell~~sDvV~l~lPlt 1021 (1128) +.++++.|||.|.+|++++..|...|+ +|.++|+...+.+ +.... ... .++.+.++++|+|+++.|.. T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284) T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284) T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC Confidence 567999999999999999999999998 7888987766544 22211 111 23455778899999999864 |
|
>PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=95.38 E-value=0.026 Score=60.75 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=46.8 Q ss_pred eEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccC Q psy13054 958 TVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128) Q Consensus 958 tvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128) +++|||- |.+|+.++++++..|+.|. +++||+|++|+|-. .+..++ +.+ T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~-~~~~~i-----~~~ 51 (197) T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPID-AALNYI-----ESY 51 (197) T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHH-HHHHHH-----HHh Confidence 6899998 9999999999999999874 35899999999943 333333 333 Q ss_pred CCCcEEEEcCCCcc Q psy13054 1037 KPTAILVNTSRGGL 1050 (1128) Q Consensus 1037 k~ga~lIN~aRG~l 1050 (1128) . .++++++.-+- T Consensus 52 ~--~~v~Dv~SvK~ 63 (197) T PRK06444 52 D--NNFVEISSVKW 63 (197) T ss_pred C--CeEEeccccCH Confidence 3 36888877554 |
|
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
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Probab=95.35 E-value=0.03 Score=64.37 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=77.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhhhhc-------------CCcc-cChHhhhccCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEGTAL-------------GAQL-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~~~~-------------g~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128) ++|+|||.|.+|..+|..+...|. +|+++|........... .++. .+.++ ++.||+|+++++. T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~- 79 (305) T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL- 79 (305) T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC- Confidence 479999999999999999988665 89999975543321110 1121 35666 7899999999883 Q ss_pred ccccc------------ccCH--HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE--Ee Q psy13054 1022 KDTEQ------------LIGR--KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG--LD 1071 (1128) Q Consensus 1022 ~~T~~------------li~~--~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa--LD 1071 (1128) |...+ ++.. +.+....+++++|+++-.-=+-...+.+. +...++.|.+ || T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305) T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305) T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH Confidence 22222 2211 23444568999999988776667777766 6666777875 67 |
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
>TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
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Probab=95.34 E-value=0.035 Score=63.95 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=67.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCC-chhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRV-KEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~-~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) -+|||||+|+||+.+++.+... +++++++..+.+ .......++. ..+.++++.+.|+|++|.|.... -.... T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~ 78 (324) T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA 78 (324) T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH Confidence 5899999999999999999765 899887544443 2212222322 24677888999999999985422 13444 Q ss_pred ccCCCCcEEEEcCCCc--ccCHH-HHHHHHhc-CCceEE Q psy13054 1034 SLMKPTAILVNTSRGG--LLDQE-ALVEFLKD-KKIGGA 1068 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~--lVde~-aL~~aL~~-g~i~ga 1068 (1128) ..++.|.=+|...--. +-+.. .|-++-++ |+..-. T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi 117 (324) T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVI 117 (324) T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEE Confidence 5567777777774321 12323 34444453 565443 |
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
>PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=95.33 E-value=0.042 Score=63.55 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=75.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchhh--hh-------cC----Ccc-cChHhhhccCCEEEEec- Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEEG--TA-------LG----AQL-VPLDTLCAESDFIFVTC- 1018 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~~--~~-------~g----~~~-~~l~ell~~sDvV~l~l- 1018 (1128) ..++|+|||.|.+|..+|..+...| .++++||...+.... .+ .+ ++. .+.+ .++.||+|+++. T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag 82 (319) T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAG 82 (319) T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCC Confidence 5678999999999999999998777 789999987654321 10 11 111 2445 779999999998 Q ss_pred -CCCcc-cc--------cccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHHh--cCCceEEE--Ee Q psy13054 1019 -ALTKD-TE--------QLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFLK--DKKIGGAG--LD 1071 (1128) Q Consensus 1019 -Plt~~-T~--------~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~--~g~i~gaa--LD 1071 (1128) |..+. ++ .++. .+.+....|.+++||++-..-+-...+.+... ..++.|.+ || T Consensus 83 ~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319) T PTZ00117 83 VQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH Confidence 44331 11 1111 12445567899999997766555555555432 45677665 56 |
|
>PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=95.30 E-value=0.067 Score=64.21 Aligned_cols=109 Identities=10% Similarity=0.120 Sum_probs=74.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC---------Cchh---h------------hhcCCcccChHhhh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR---------VKEE---G------------TALGAQLVPLDTLC 1008 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~---------~~~~---~------------~~~g~~~~~l~ell 1008 (1128) ++.|+||.|.|+|++|+.+|+.|..+|++|++..+.. +..+ . ...+.++.+.++++ T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~ 308 (445) T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPW 308 (445) T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcccc Confidence 4789999999999999999999999999999883311 1110 0 00122334555555 Q ss_pred c-cCCEEEEecCCCcccccccCHHHHccCC--CCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1009 A-ESDFIFVTCALTKDTEQLIGRKQFSLMK--PTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1009 ~-~sDvV~l~lPlt~~T~~li~~~~l~~mk--~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) . .|||++-|.. .+.|+.+...+++ .=.+++--+-+.+ +.+--+.|.++.|..+ T Consensus 309 ~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~~v 364 (445) T PRK09414 309 SVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVLFA 364 (445) T ss_pred ccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcEEE Confidence 4 6999997765 3578887777773 3456777788887 3345577777776554 |
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>PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=95.30 E-value=0.18 Score=60.60 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=97.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEE--------EeCCCCchhh---------------h----hc-CCcccCh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKIL--------YTSRRVKEEG---------------T----AL-GAQLVPL 1004 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~--------~d~~~~~~~~---------------~----~~-g~~~~~l 1004 (1128) ++.|+||.|=|+|++|+..|+.|..+|++|++ ||+..-..+. . .. +.++.+- T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~ 304 (445) T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAG 304 (445) T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCC Confidence 48999999999999999999999999999999 7755332211 0 11 3344455 Q ss_pred Hhhhc-cCCEEEEecCCCcccccccCHHHHccCC--CCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC Q psy13054 1005 DTLCA-ESDFIFVTCALTKDTEQLIGRKQFSLMK--PTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128) Q Consensus 1005 ~ell~-~sDvV~l~lPlt~~T~~li~~~~l~~mk--~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128) ++++. .|||.+-|. +.+.|+++...++. .=.+++--+-+ ++..+|- +.|.+..|..+ =|+..+-=--.- T Consensus 305 ~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~~v-PD~~aNAGGViv 376 (445) T PRK14030 305 KKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQLFA-PGKAVNAGGVAT 376 (445) T ss_pred ccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCEEe-CcceecCCCeee Confidence 55544 488888554 66789988888873 24566667777 6666544 67777766554 233222100000 Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHH Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGY 1119 (1128) Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l 1119 (1128) +-+=-..|. -|.-|..++..+++-+.+.+...+.+ T Consensus 377 s~~E~~qn~---~~~~w~~eeV~~~L~~~m~~~~~~v~ 411 (445) T PRK14030 377 SGLEMSQNA---MHLSWSAEEVDEKLHQIMSGIHEQCV 411 (445) T ss_pred ehhhhhccc---cccCcCHHHHHHHHHHHHHHHHHHHH Confidence 101011222 46667777777777777666655543 |
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>PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
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Probab=95.28 E-value=0.046 Score=63.38 Aligned_cols=87 Identities=11% Similarity=0.135 Sum_probs=62.2 Q ss_pred CCCeEEEEEcChhhHHHHHHHh-hCCC-EEEEEeCCCCchh--hh----hcCCc---ccChHhhhccCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLK-AFKV-SKILYTSRRVKEE--GT----ALGAQ---LVPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~-afG~-~Vi~~d~~~~~~~--~~----~~g~~---~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) ..++++|||.|.+|+..++.+. ..++ +|.+|++...+.+ .. ..++. ..+++++++++|+|+++.|.. T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325) T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325) T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC-- Confidence 4678999999999999887764 4565 5666766555443 11 12433 247899999999999999955 Q ss_pred cccccCHHHHccCCCCcEEEEcCCC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) +-+|. +.+|+|+.++.++.- T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325) T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325) T ss_pred -CcchH----HhcCCCcEEEecCCC Confidence 34554 456999999988653 |
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>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
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Probab=95.26 E-value=0.042 Score=63.36 Aligned_cols=90 Identities=17% Similarity=0.207 Sum_probs=54.9 Q ss_pred CeEEEEEcChhhHHHHHHHhh-CCC-EEEEEeCCCCchh-----hhhcCCcc---cChHhhhccCCEEEEecCCCccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKA-FKV-SKILYTSRRVKEE-----GTALGAQL---VPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~a-fG~-~Vi~~d~~~~~~~-----~~~~g~~~---~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) +++||||.|..|+.-++.+.. ++. +|.+|+++..+.+ ....++.. .+.++.+++||+|+.+.|.+..+ - T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313) T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313) T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c Confidence 589999999999998887753 444 6778877655443 11223332 37999999999999998877644 6 Q ss_pred ccCHHHHccCCCCcEEEEcCCCcc Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) +++.+ .++||+.++.+|.... T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313) T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313) T ss_dssp SB-GG---GS-TT-EEEE-S-SST T ss_pred cccHH---HcCCCcEEEEecCCCC Confidence 77765 6689999999987654 |
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
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Probab=95.18 E-value=0.23 Score=57.18 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=48.6 Q ss_pred cCCCeEEEEEc---ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEec Q psy13054 954 LKGATVGIVGL---GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 954 L~gktvGIIG~---G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~l 1018 (1128) +.|++|++||= +++.+..+..+..||+++.++.|..-.+... .... ..++++.++.+|||.... T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~-~~~~~~~d~~ea~~~aDvvyt~~ 221 (305) T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM-PEYGVHTDLDEVIEDADVVMMLR 221 (305) T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc-cceEEECCHHHHhCCCCEEEECC Confidence 67899999988 5899999999999999998887654332210 0112 348999999999998743 |
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>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
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Probab=95.13 E-value=0.079 Score=67.74 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=82.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-----------hhcC-------------Cccc-ChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-----------TALG-------------AQLV-PLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-----------~~~g-------------~~~~-~l~ell~~ 1010 (1128) ++|+|||.|.||..+|..+...|++|++||......+ . .+.| ++.. ++ +.++. T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715) T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715) T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC Confidence 6799999999999999999999999999997765321 0 0111 1112 44 44699 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) ||+|+=++|...+.+.-+=++.=+.++++++|-....+ +....|.++++. +=..+++--|.+ T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P 454 (715) T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNP 454 (715) T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCc Confidence 99999999999998877766777888999988655443 556667777754 334555555533 |
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>PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=95.06 E-value=0.051 Score=60.70 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=64.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhC---CCEEEEEeCCCC-chhhhhcCCccc-ChHhh-hccCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF---KVSKILYTSRRV-KEEGTALGAQLV-PLDTL-CAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af---G~~Vi~~d~~~~-~~~~~~~g~~~~-~l~el-l~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ++|||||+|.||+.+++.+..- ++++.++.++.. +........... +++++ ....|+|+=|.+-. .+-+ T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~-----av~e 77 (267) T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ-----AIAE 77 (267) T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH-----HHHH Confidence 5899999999999999988642 355555444433 222111123333 79997 68899999887732 1222 Q ss_pred HHHccCCCCcEEEEcCCCcccC---HHHHHHHHhc Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLD---QEALVEFLKD 1062 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVd---e~aL~~aL~~ 1062 (1128) --.+-++.|.-++=+|=|.+.| ++.|.++.++ T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~ 112 (267) T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA 112 (267) T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh Confidence 2334445677777788888887 4555555544 |
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>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
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Probab=95.00 E-value=0.047 Score=52.79 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=57.0 Q ss_pred hhHHHHHHHhhCCCEEEEEeCCCCchhhhh----cCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcE Q psy13054 967 IGLETAKLLKAFKVSKILYTSRRVKEEGTA----LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 1041 (1128) Q Consensus 967 IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~----~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 1041 (1128) -+..+++.|+..|++|.+|||......... .+++.. ++++.++.+|+|+++.+-. +-+.+--.+....|+++.+ T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~ 96 (106) T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPV 96 (106) T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEE T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCE Confidence 356899999999999999999988776433 456655 7999999999999999844 4443323345567889999 Q ss_pred EEEc Q psy13054 1042 LVNT 1045 (1128) Q Consensus 1042 lIN~ 1045 (1128) +|++ T Consensus 97 iiD~ 100 (106) T PF03720_consen 97 IIDG 100 (106) T ss_dssp EEES T ss_pred EEEC Confidence 9987 |
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
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Probab=94.99 E-value=0.091 Score=67.05 Aligned_cols=114 Identities=11% Similarity=0.019 Sum_probs=80.1 Q ss_pred CeEEEEEcChhhHHHHHHHh-hCCCEEEEEeCCCCchh-h-----------hhc-------------CCccc-ChHhhhc Q psy13054 957 ATVGIVGLGNIGLETAKLLK-AFKVSKILYTSRRVKEE-G-----------TAL-------------GAQLV-PLDTLCA 1009 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~-afG~~Vi~~d~~~~~~~-~-----------~~~-------------g~~~~-~l~ell~ 1009 (1128) ++|+|||.|.||..+|..+. ..|++|++||....... . ... .++.. ++ +.++ T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699) T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699) T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc Confidence 68999999999999999887 57999999997754221 0 000 11222 34 4578 Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128) Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128) .||+|+=++|...+.++=+=++.=+.++++++|.....+ +....|.++++. +=..+++--|. T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hffn 445 (699) T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFS 445 (699) T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCC Confidence 999999999999988876666677788999888654433 455667777643 22445556553 |
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=94.98 E-value=0.031 Score=65.19 Aligned_cols=92 Identities=11% Similarity=0.142 Sum_probs=64.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-------c--CC------cc-cChHhhhccCCEEEEecC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-------L--GA------QL-VPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-------~--g~------~~-~~l~ell~~sDvV~l~lP 1019 (1128) .+|+|||.|.+|..+|..|...| .|+.|.++....+ ..+ . +. .. .++++.++.+|+|++++| T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341) T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341) T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC Confidence 57999999999999999999888 6778875433221 111 0 11 11 267788899999999999 Q ss_pred CCcccccccCHHHHccCCCCcEEEEcCCCccc Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~lV 1051 (1128) ...++.++. +.-..++++..+|++.-|=-. T Consensus 87 -s~~~~~vl~-~i~~~l~~~~~vIsl~kGi~~ 116 (341) T PRK12439 87 -SHGFRGVLT-ELAKELRPWVPVVSLVKGLEQ 116 (341) T ss_pred -HHHHHHHHH-HHHhhcCCCCEEEEEEeCCcC Confidence 444555543 333456788899999887543 |
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>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
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Probab=94.92 E-value=0.28 Score=57.15 Aligned_cols=157 Identities=15% Similarity=0.183 Sum_probs=117.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC----C-cccChHhh---hccCCEEEEecCCCccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG----A-QLVPLDTL---CAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g----~-~~~~l~el---l~~sDvV~l~lPlt~~T~~ 1026 (1128) ..+|+||+|.||+-+|-....-|.+|.+||+..++.+ .++.+ + ...+++|+ ++.-.-|.+++-...-... T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473) T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473) T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH Confidence 4699999999999999999999999999998888765 22222 1 12367665 5667778877765432233 Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHH Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~ 1106 (1128) +| ...+..|.+|=++|+-+...--|+.--.++|.+..|...+.-|--.|--.-.- |.+ +-|.+.++++. T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~G-----PSi-----MpGG~~eay~~ 152 (473) T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHG-----PSI-----MPGGQKEAYEL 152 (473) T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccC-----CCc-----CCCCCHHHHHH Confidence 44 36788899999999999999999999999999999999999998877522111 221 23788899887 Q ss_pred HHHHHHHHHHHHHcCCCCC Q psy13054 1107 KSSTSAENIIRGYKGEPMI 1125 (1128) Q Consensus 1107 ~~~~~~~nl~~~l~G~~l~ 1125 (1128) +..+ .+.|.+-..|+|+. T Consensus 153 v~pi-l~~IaAk~~g~pCc 170 (473) T COG0362 153 VAPI-LTKIAAKVDGEPCC 170 (473) T ss_pred HHHH-HHHHHhhcCCCCce Confidence 6654 45666666688874 |
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>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
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Probab=94.91 E-value=0.046 Score=62.60 Aligned_cols=73 Identities=25% Similarity=0.301 Sum_probs=59.6 Q ss_pred cCCccc-CHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec Q psy13054 307 LGAQLV-PLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128) Q Consensus 307 ~g~~~v-sLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128) .|++.. +++|+++. +|+|++++|-.+.++.++ ...++.+++|.++|+++.+..-....+.+.+++..+. .+|. T Consensus 42 ~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301) T PRK09599 42 EGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301) T ss_pred CCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC Confidence 455554 78999886 699999999877888877 3567889999999999999999999999999987664 3463 |
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>PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
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Probab=94.82 E-value=0.066 Score=62.17 Aligned_cols=85 Identities=15% Similarity=0.210 Sum_probs=60.4 Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CC-CEEEEEeCCCCchh--hh----hcCCc---ccChHhhhccCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FK-VSKILYTSRRVKEE--GT----ALGAQ---LVPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG-~~Vi~~d~~~~~~~--~~----~~g~~---~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) ..++++|||.|.+|+..+..+.. .+ -+|.+|+++..+.+ .. ..++. ..++++++++||+|+++.|.. T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330) T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330) T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC-- Confidence 35789999999999998888874 55 46888876655544 12 12443 247889999999999998864 Q ss_pred cccccCHHHHccCCCCcEEEEc Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) .-+|..+. +++|+.+.-+ T Consensus 209 -~p~i~~~~---l~~g~~v~~v 226 (330) T PRK08291 209 -EPILKAEW---LHPGLHVTAM 226 (330) T ss_pred -CcEecHHH---cCCCceEEee Confidence 34676544 4677766654 |
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>PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
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Probab=94.81 E-value=0.39 Score=55.28 Aligned_cols=92 Identities=17% Similarity=0.230 Sum_probs=62.9 Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--h-----hhcCCcc---cChHhhhccCCEEEEec---- Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--G-----TALGAQL---VPLDTLCAESDFIFVTC---- 1018 (1128) Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~-----~~~g~~~---~~l~ell~~sDvV~l~l---- 1018 (1128) +.|++|++||- +++.+..+..+..||++|.+..|..-... . +..|.+. .++++.++.+|+|..-. T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304) T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304) T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc Confidence 67899999998 78999999999999999998876653321 1 2234332 48999999999999742 Q ss_pred CCCc---c-----cccccCHHHHccCCCCcEEEEc Q psy13054 1019 ALTK---D-----TEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1019 Plt~---~-----T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) .... + -..-++++.++.+|+++++.-+ T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHp 264 (304) T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHC 264 (304) T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecC Confidence 1100 0 1223466666666666666544 |
|
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
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Probab=94.77 E-value=0.074 Score=62.69 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=64.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh-hhhcC---Ccc--------cChHhhhccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE-GTALG---AQL--------VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~-~~~~g---~~~--------~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) ++|.|||.|.||+.+|..|..-| .+|.+.|+...+.. ..... ++. ..+.+++++.|+|++++|.. T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~-- 79 (389) T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF-- 79 (389) T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch-- Confidence 57999999999999999998888 99999987766554 32221 211 14778999999999999954 Q ss_pred cccccCHHHH-ccCCCCcEEEEcCCCccc Q psy13054 1024 TEQLIGRKQF-SLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1024 T~~li~~~~l-~~mk~ga~lIN~aRG~lV 1051 (1128) ++...+ +.++-|.-.|+++-...- T Consensus 80 ----~~~~i~ka~i~~gv~yvDts~~~~~ 104 (389) T COG1748 80 ----VDLTILKACIKTGVDYVDTSYYEEP 104 (389) T ss_pred ----hhHHHHHHHHHhCCCEEEcccCCch Confidence 344555 445677777777655543 |
|
>PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=94.75 E-value=0.077 Score=61.55 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=59.8 Q ss_pred CCeEEEEEcChhhHHHHHHHh-hCCCE-EEEEeCCCCchh--hhh----cCC--c-ccChHhhhccCCEEEEecCCCccc Q psy13054 956 GATVGIVGLGNIGLETAKLLK-AFKVS-KILYTSRRVKEE--GTA----LGA--Q-LVPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~-afG~~-Vi~~d~~~~~~~--~~~----~g~--~-~~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) -+++||||.|.+|+..++.+. ..+.+ |.+||+...+.. ..+ .+. . ..+++++++ +|+|+++.|.+ T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326) T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326) T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC--- Confidence 468999999999999998886 34554 445665554433 111 132 2 237889887 99999999864 Q ss_pred ccccCHHHHccCCCCcEEEEcCC Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .-+|+.+. +|+|+.+..+|. T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326) T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326) T ss_pred CcEecHHH---cCCCCEEEecCC Confidence 35677654 489999888874 |
|
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
---|
Probab=94.71 E-value=0.13 Score=57.22 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=89.9 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEE--------eCCCCchh-----hhhcCC-------------cccChH- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILY--------TSRRVKEE-----GTALGA-------------QLVPLD- 1005 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~--------d~~~~~~~-----~~~~g~-------------~~~~l~- 1005 (1128) ++.|+++.|-|+|++|+.+|+.|...|+++++. |+..-+.+ ..+.+. ++.+-+ T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244) T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244) T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc Confidence 489999999999999999999999999999876 43322211 111222 112222 Q ss_pred hhh-ccCCEEEEecCCCcccccccCHHHHc-cCCCCcEEEE-cCCCcccCHHHHHHHHhcCCceEEEEeccCCCC--CCC Q psy13054 1006 TLC-AESDFIFVTCALTKDTEQLIGRKQFS-LMKPTAILVN-TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP--LPA 1080 (1128) Q Consensus 1006 ell-~~sDvV~l~lPlt~~T~~li~~~~l~-~mk~ga~lIN-~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP--l~~ 1080 (1128) +++ ..|||++-|. ..+.|+.+... .+++++-+|- -+.+.+ ..+|.- .|++..|.-+ =|..-+-= ... T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~vi-PD~~aNaGGvi~s 180 (244) T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGILVI-PDFLANAGGVIVS 180 (244) T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-EEE--HHHHTTHHHHHH T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCEEE-cchhhcCCCeEee Confidence 555 6899999873 33578888888 7776665554 455555 555555 8888887655 33222100 000 Q ss_pred CCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHH Q psy13054 1081 DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRG 1118 (1128) Q Consensus 1081 ~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~ 1118 (1128) ...+.. | ..+..|..++..+++.+.+.++..+. T Consensus 181 ~~E~~~--~---~~~~~~~~~~v~~~l~~~m~~~~~~v 213 (244) T PF00208_consen 181 YFEWLQ--N---LQGLFWTEEEVFEKLEEIMDRAFKRV 213 (244) T ss_dssp HHHHHH--H---HHTSSTTHHHHHHHHHHHHHHHHHHH T ss_pred hhhhcc--h---hhhhhhhHHHHHHHHHHHHHHHHHHH Confidence 001111 1 22445566666666666665555543 |
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
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Probab=94.70 E-value=0.063 Score=52.83 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=54.8 Q ss_pred eEEEEEc-ChhhHHHHHHHhhC-CCEEEEE-eCCCCchh-hhhcC--Cc-----ccChHhhh-ccCCEEEEecCCCcccc Q psy13054 958 TVGIVGL-GNIGLETAKLLKAF-KVSKILY-TSRRVKEE-GTALG--AQ-----LVPLDTLC-AESDFIFVTCALTKDTE 1025 (1128) Q Consensus 958 tvGIIG~-G~IG~~vA~~l~af-G~~Vi~~-d~~~~~~~-~~~~g--~~-----~~~l~ell-~~sDvV~l~lPlt~~T~ 1025 (1128) ++||+|. |.+|+.+++.++.. ++++..+ +++..... ....+ .. ..+.+++. .++|+|++|+|.. .+. T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~ 79 (122) T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK 79 (122) T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH Confidence 5899995 99999999999875 7777766 32221111 11111 11 11212222 5899999999955 333 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) ..+. .....+++|.++|+++. T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122) T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122) T ss_pred HHHH-HHHhhhcCCCEEEECCc Confidence 3332 23556799999999973 |
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
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Probab=94.58 E-value=0.097 Score=67.08 Aligned_cols=115 Identities=11% Similarity=0.162 Sum_probs=82.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hcC-------------Ccc-cChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------ALG-------------AQL-VPLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~g-------------~~~-~~l~ell~~ 1010 (1128) ++|+|||.|.||..+|..+...|++|+.||......+ .. ..| ++. .+++ .++. T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737) T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737) T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc Confidence 5899999999999999999988999999997654322 00 011 111 2444 5689 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) ||+|+=++|.+.+.+.=+=++.=+.++++++|.... +-++...|.++++. +=...++.-|.+ T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNT--Ssl~i~~la~~~~~-p~r~ig~Hff~P 476 (737) T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNT--SALPIKDIAAVSSR-PEKVIGMHYFSP 476 (737) T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcC--CCCCHHHHHhhcCC-ccceEEEeccCC Confidence 999999999999988777667778889999986433 33566777777754 334566666643 |
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
>PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
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Probab=94.58 E-value=0.054 Score=58.58 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=52.6 Q ss_pred CcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC-Cccc--C-hHhhhccCCEEEEecCCCc Q psy13054 949 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG-AQLV--P-LDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 949 ~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g-~~~~--~-l~ell~~sDvV~l~lPlt~ 1022 (1128) |.+..+.||+|.|||.|.+|...++.|...|++|.++++...+.. ....+ +... . .++.+..+|+|+.+....+ T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202) T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202) T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH Confidence 344579999999999999999999999999999999986543321 11111 2221 2 2345678888887766443 Q ss_pred cc Q psy13054 1023 DT 1024 (1128) Q Consensus 1023 ~T 1024 (1128) -+ T Consensus 83 lN 84 (202) T PRK06718 83 VN 84 (202) T ss_pred HH Confidence 33 |
|
>PLN02477 glutamate dehydrogenase | Back alignment and domain information |
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Probab=94.57 E-value=0.32 Score=57.99 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=90.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC--------chh-h-h--h-------c-CCcccChHhh-hccC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--------KEE-G-T--A-------L-GAQLVPLDTL-CAES 1011 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~--------~~~-~-~--~-------~-g~~~~~l~el-l~~s 1011 (1128) ++.|++|.|.|+|++|+.+|+.|...|++|+++.+... ... . + + . +.+..+.+++ ...| T Consensus 203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~ 282 (410) T PLN02477 203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPC 282 (410) T ss_pred CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccc Confidence 48999999999999999999999999999995533320 011 1 0 0 0 1222344443 3468 Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeE Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCV 1091 (1128) Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvi 1091 (1128) ||++-|. ..+.|+++...+++ =.+++--+-+.+ ..+ --+.|++..|..+ =|+ +..---|+ T Consensus 283 DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~~~-PD~-----------~aNaGGVi 342 (410) T PLN02477 283 DVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVVVL-PDI-----------YANSGGVT 342 (410) T ss_pred cEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcEEE-ChH-----------HhCCCCee Confidence 8888554 34578888888875 667778888887 433 4577888776554 222 22222233 Q ss_pred ECC--------CCCCCcHHHHHHHHHHHHHHHHHHH Q psy13054 1092 LTP--------HTSSATKAVRDEKSSTSAENIIRGY 1119 (1128) Q Consensus 1092 lTP--------Hiag~t~e~~~~~~~~~~~nl~~~l 1119 (1128) .+= |.-|..++..+++.+.+.+.+.+.+ T Consensus 343 vs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~ 378 (410) T PLN02477 343 VSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALK 378 (410) T ss_pred eeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHH Confidence 221 3335556666666656655555443 |
|
>KOG0023|consensus | Back alignment and domain information |
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Probab=94.56 E-value=0.066 Score=60.77 Aligned_cols=88 Identities=26% Similarity=0.343 Sum_probs=58.8 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-h-hhhcCCccc--C------hHhhhccCCEEEEecCCCccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-E-GTALGAQLV--P------LDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~-~~~~g~~~~--~------l~ell~~sDvV~l~lPlt~~T 1024 (1128) .|+.+||+|+|-+|.--.+.++|||++|++.+....+. + ...+|+... + .+++...-|.++-+++.- . T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a 258 (360) T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A 258 (360) T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c Confidence 79999999999999999999999999999998765333 3 444665421 1 345556666666555522 2 Q ss_pred ccccCHHHHccCCCCcEEEEc Q psy13054 1025 EQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~ 1045 (1128) .+-++ ..++.||++..+|-+ T Consensus 259 ~~~~~-~~~~~lk~~Gt~V~v 278 (360) T KOG0023|consen 259 EHALE-PLLGLLKVNGTLVLV 278 (360) T ss_pred ccchH-HHHHHhhcCCEEEEE Confidence 23332 355666665555544 |
|
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
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Probab=94.53 E-value=0.15 Score=65.27 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=81.4 Q ss_pred CeEEEEEcChhhHHHHHHHh-hCCCEEEEEeCCCCchh-h-----------hhcC-------------Cccc-ChHhhhc Q psy13054 957 ATVGIVGLGNIGLETAKLLK-AFKVSKILYTSRRVKEE-G-----------TALG-------------AQLV-PLDTLCA 1009 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~-afG~~Vi~~d~~~~~~~-~-----------~~~g-------------~~~~-~l~ell~ 1009 (1128) ++|+|||.|.||..+|..+. ..|++|+.||....... . .+.+ ++.. ++ +.++ T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708) T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708) T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc Confidence 68999999999999999987 77999999997654221 1 0011 1111 34 4578 Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128) Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128) .||+|+=++|.+.+.+.=+=++.=+.++|+++|.....+ +....|.+.++. +=..+++--|. T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~ 450 (708) T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS 450 (708) T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC Confidence 999999999999888876666666788999999755444 566677777654 22455666663 |
|
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
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Probab=94.48 E-value=0.1 Score=61.27 Aligned_cols=146 Identities=19% Similarity=0.257 Sum_probs=95.2 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC------------------chh--hhhcCCcccChHhhhc-cCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV------------------KEE--GTALGAQLVPLDTLCA-ESD 1012 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~------------------~~~--~~~~g~~~~~l~ell~-~sD 1012 (1128) +.|+||.|=|+|++|+..|+.|...|.+|+++++... +.. ....+.++.+-++++. .|| T Consensus 205 l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cD 284 (411) T COG0334 205 LEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCD 284 (411) T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCc Confidence 8999999999999999999999999999999987776 111 1223455566677664 689 Q ss_pred EEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEE Q psy13054 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVL 1092 (1128) Q Consensus 1013 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvil 1092 (1128) |.+= -.+.+.|+.+...++|.. +++--+.+.+- .+|--.-++.| |-.+ =|+ |...--|+. T Consensus 285 Il~P-----cA~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erG-Il~~-PD~-----------laNAGGV~v 344 (411) T COG0334 285 ILIP-----CALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERG-ILVV-PDI-----------LANAGGVIV 344 (411) T ss_pred EEcc-----cccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCC-CEEc-Chh-----------hccCcCeee Confidence 8873 346678988888888877 77888888865 33333333444 3232 122 222222222 Q ss_pred CC--------CCCCCcHHHHHHHHHHHHHHHHHHH Q psy13054 1093 TP--------HTSSATKAVRDEKSSTSAENIIRGY 1119 (1128) Q Consensus 1093 TP--------Hiag~t~e~~~~~~~~~~~nl~~~l 1119 (1128) += -..|.-++..+++..++.+..+.+. T Consensus 345 S~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~ 379 (411) T COG0334 345 SYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVY 379 (411) T ss_pred ehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHH Confidence 21 1225666777777777766665543 |
|
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=94.48 E-value=0.063 Score=62.05 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=61.1 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--------CC------cc-cChHhhh-ccCCEEEEecCC Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--------GA------QL-VPLDTLC-AESDFIFVTCAL 1020 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--------g~------~~-~~l~ell-~~sDvV~l~lPl 1020 (1128) +|+|||.|.+|..+|..|...|.+|.+|+++....+ .... +. .. .++++.+ ..+|+|++++| T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk- 80 (326) T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP- 80 (326) T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC- Confidence 599999999999999999999999999986543221 1110 11 11 2456665 58999999999 Q ss_pred CcccccccCHHHHc-cCCCCcEEEEcCCCc Q psy13054 1021 TKDTEQLIGRKQFS-LMKPTAILVNTSRGG 1049 (1128) Q Consensus 1021 t~~T~~li~~~~l~-~mk~ga~lIN~aRG~ 1049 (1128) ...+..++. +.-. .++++..+|...-|- T Consensus 81 s~~~~~~l~-~l~~~~l~~~~~vv~~~nGi 109 (326) T PRK14620 81 TQQLRTICQ-QLQDCHLKKNTPILICSKGI 109 (326) T ss_pred HHHHHHHHH-HHHHhcCCCCCEEEEEEcCe Confidence 344554443 2222 556777778777764 |
|
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
---|
Probab=94.47 E-value=0.089 Score=53.34 Aligned_cols=86 Identities=22% Similarity=0.262 Sum_probs=51.3 Q ss_pred EEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCC Q psy13054 959 VGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKP 1038 (1128) Q Consensus 959 vGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ 1038 (1128) +-|+|.|.+++++++.++.+|++|+++|++.+.- ..++-+. +.+. ++.. +.+ .+.+ T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~----------------~~~~~~~-~~~~-~~~~-----~~~-~~~~ 56 (136) T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERF----------------PEADEVI-CIPP-DDIL-----EDL-EIDP 56 (136) T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-----------------TTSSEEE-CSHH-HHHH-----HHC--S-T T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcccc----------------CCCCccE-ecCh-HHHH-----hcc-CCCC Confidence 4689999999999999999999999999885411 1222211 1221 1110 112 3556 Q ss_pred CcEEEEcCCCcccCHHHHHHHHhcCCceEEEE Q psy13054 1039 TAILVNTSRGGLLDQEALVEFLKDKKIGGAGL 1070 (1128) Q Consensus 1039 ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaL 1070 (1128) +.++| +.++.-.|.++|..+|++ +....|+ T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~ 86 (136) T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALAS-PARYIGL 86 (136) T ss_dssp T-EEE---S-CCCHHHHHHHHTTS-S-SEEEE T ss_pred CeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe Confidence 66666 889999999999999888 4555543 |
|
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
---|
Probab=94.46 E-value=0.07 Score=62.24 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=64.6 Q ss_pred eEEEEEcChhhHHHHHHHhhCC--------CEEEEEeCCC---Cchh---h-h-h------cCC------cc-cChHhhh Q psy13054 958 TVGIVGLGNIGLETAKLLKAFK--------VSKILYTSRR---VKEE---G-T-A------LGA------QL-VPLDTLC 1008 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG--------~~Vi~~d~~~---~~~~---~-~-~------~g~------~~-~~l~ell 1008 (1128) +|+|||.|+.|.++|..|..-| .+|..|.+.. .... . . . .++ +. .++++++ T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342) T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342) T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH Confidence 5899999999999999997656 8999997522 1110 0 0 0 022 12 3788999 Q ss_pred ccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccC Q psy13054 1009 AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 (1128) Q Consensus 1009 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVd 1052 (1128) +.||+|++++| +...+.++. +.-..++++..+|+++-|=-.+ T Consensus 81 ~~ADiIIlAVP-s~~i~~vl~-~l~~~l~~~~~iVs~tKGie~~ 122 (342) T TIGR03376 81 KGADILVFVIP-HQFLEGICK-QLKGHVKPNARAISCIKGLEVS 122 (342) T ss_pred hcCCEEEEECC-hHHHHHHHH-HHHhhcCCCCEEEEEeCCcccC Confidence 99999999999 444444442 3334568899999999885444 |
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=94.44 E-value=0.14 Score=62.25 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=74.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch------hhhhcCCccc---ChHhhhccCCEEEEecCCCcc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE------EGTALGAQLV---PLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~------~~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~ 1023 (1128) .+.+++|+|+|+|..|+++|+.|+..|++|.++|...... .....|+... ...+.+.++|+|++. |.-+. T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458) T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458) T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC Confidence 4678999999999999999999999999999999654311 1233465543 234556889999886 65544 Q ss_pred ccccc-----------CH-HHHcc-CCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1024 TEQLI-----------GR-KQFSL-MKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1024 T~~li-----------~~-~~l~~-mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) +.-.+ ++ +.+.+ .+...+-|-=+.|+.-...-|...|+.. T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~ 142 (458) T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE 142 (458) T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC Confidence 33222 22 12222 2334666777888888777777778753 |
|
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
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Probab=94.44 E-value=0.066 Score=61.97 Aligned_cols=61 Identities=25% Similarity=0.231 Sum_probs=48.7 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhh--hcC--Ccc---cChHhhhccCCEEEE Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT--ALG--AQL---VPLDTLCAESDFIFV 1016 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~--~~g--~~~---~~l~ell~~sDvV~l 1016 (1128) ++||||||-|..|+.++.-++.+|.+|++.|+..+.+... +.- ..+ ..+.++.++||+|.. T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375) T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375) T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE Confidence 4799999999999999999999999999999888766511 111 111 258899999999984 |
|
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
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Probab=94.44 E-value=0.023 Score=61.40 Aligned_cols=83 Identities=24% Similarity=0.244 Sum_probs=57.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCc-------------------hh-----hhhcC--Cc----- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVK-------------------EE-----GTALG--AQ----- 1000 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~-------------------~~-----~~~~g--~~----- 1000 (1128) .|.+++|.|||+|.+|..+|+.|...|. ++.++|+..-. .+ ..+.+ ++ T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202) T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202) T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh Confidence 6899999999999999999999999998 78888876311 11 00100 10 Q ss_pred -c---cChHhhhccCCEEEEecCCCcccccccCHHHHccC Q psy13054 1001 -L---VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128) Q Consensus 1001 -~---~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128) . .+++++++++|+|+.++. +.+++..+++-..+.. T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ 136 (202) T TIGR02356 98 ERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALG 136 (202) T ss_pred hcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcC Confidence 1 124567888998887764 5677777776554443 |
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
>PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
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Probab=94.41 E-value=0.066 Score=55.60 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=47.8 Q ss_pred CcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC-Ccc--cCh-HhhhccCCEEEEecC Q psy13054 949 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALG-AQL--VPL-DTLCAESDFIFVTCA 1019 (1128) Q Consensus 949 ~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g-~~~--~~l-~ell~~sDvV~l~lP 1019 (1128) |.+..+.|++|.|||-|.+|.+.++.|...|++|.++++..... ..+.+ +.. ..+ ++-+..+|+|+.+.. T Consensus 6 P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~-l~~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157) T PRK06719 6 PLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKE-MKELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157) T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHH-HHhccCcEEEecccChhcCCCceEEEECCC Confidence 44558999999999999999999999999999999996543322 22221 111 112 223566777776554 |
|
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
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Probab=94.41 E-value=0.6 Score=53.76 Aligned_cols=92 Identities=16% Similarity=0.214 Sum_probs=62.7 Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCc---ccChHhhhccCCEEEEec- Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQ---LVPLDTLCAESDFIFVTC- 1018 (1128) Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~---~~~l~ell~~sDvV~l~l- 1018 (1128) +.|.+|+++|- +++-+..+..+..||++|.+..|..-... ....|.+ ..++++.++.+|||..-. T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304) T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304) T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc Confidence 67899999998 78889999999999999998876553321 1223432 248999999999999743 Q ss_pred -CCCcc----------cccccCHHHHccCCCCcEEEEc Q psy13054 1019 -ALTKD----------TEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1019 -Plt~~----------T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) +...+ ....++++.++.+|+++++.=+ T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHp 263 (304) T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHC 263 (304) T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECC Confidence 11110 1224566667777766666443 |
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
---|
Probab=94.32 E-value=0.15 Score=56.80 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=61.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128) -++-|+|.|.+++++++.++.+|++|+++|++.+.... +.+..++.+....| .+.+..+ T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~-----------~~~~~~~~~~~~~~----------~~~~~~~ 159 (246) T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE-----------DLPDGVATLVTDEP----------EAEVAEA 159 (246) T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc-----------cCCCCceEEecCCH----------HHHHhcC Confidence 46999999999999999999999999999987542110 00112222221111 2333345 Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1037 k~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) .+..++|=+.|+.-.|.++|..+|++...++. T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~~~~~~YI 191 (246) T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALRRGDFAYF 191 (246) T ss_pred CCCcEEEEEeCChHHHHHHHHHHHhCCCCcEE Confidence 56777888889999999999999965444333 |
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
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Probab=94.23 E-value=0.052 Score=62.23 Aligned_cols=123 Identities=16% Similarity=0.191 Sum_probs=84.6 Q ss_pred HhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcc Q psy13054 254 SEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKD 333 (1128) Q Consensus 254 ~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~ 333 (1128) +...-.+.|..+. +.|+|-.|+-+|.+..|.+.. +.+...|+...-++.--|++.++++|..+.+||++-+ .. T Consensus 201 RaTn~liaGK~vV--V~GYG~vGrG~A~~~rg~GA~-ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~----TG 273 (420) T COG0499 201 RATNVLLAGKNVV--VAGYGWVGRGIAMRLRGMGAR-VIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTA----TG 273 (420) T ss_pred hhhceeecCceEE--EecccccchHHHHHhhcCCCe-EEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEc----cC Confidence 3444455666554 679999999998876665432 3344444433323334588889999999999999874 47 Q ss_pred cccccCHHHHhcCCCCcEEEEecCCCc-cCHHHHHH-HHHcCCeeEEEEecCC Q psy13054 334 TEQLIGRKQFSLMKPTAILINTSRGGL-LDQEALVE-FLKDKKIGGAGLDVMI 384 (1128) Q Consensus 334 T~~lIn~~~l~~MK~gaiLINtaRG~l-VDe~AL~~-AL~sG~IagAaLDVfe 384 (1128) +++.|..+.|..||+|+++-|++.=.+ ||-++|.+ +++-..+... .|-|+ T Consensus 274 nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~-V~ey~ 325 (420) T COG0499 274 NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQ-VDEYE 325 (420) T ss_pred CcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccC-ceEEE Confidence 899999999999999999999986544 67777654 3344444433 34443 |
|
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
---|
Probab=94.20 E-value=0.086 Score=60.56 Aligned_cols=99 Identities=16% Similarity=0.215 Sum_probs=70.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh--------------hcCCcc-cChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT--------------ALGAQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~--------------~~g~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) ++|.|||.|.-|.++|+.|..-|.+|..|..+..-.. .. ..++.. .+++++++.||+|++.+| T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329) T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329) T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC- Confidence 5799999999999999999999999999975432111 00 011122 379999999999999999 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHH Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALV 1057 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~ 1057 (1128) ....+.++..- -..+++++.+|+++-|=-.+.-.+. T Consensus 81 s~~~r~v~~~l-~~~l~~~~~iv~~sKGie~~t~~l~ 116 (329) T COG0240 81 SQALREVLRQL-KPLLLKDAIIVSATKGLEPETGRLL 116 (329) T ss_pred hHHHHHHHHHH-hhhccCCCeEEEEeccccCCCcchH Confidence 44444444321 2456899999999988766544444 |
|
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
---|
Probab=94.20 E-value=0.067 Score=60.78 Aligned_cols=68 Identities=12% Similarity=0.017 Sum_probs=49.9 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC----Cccc----ChHhhhccCCEEEEecCCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG----AQLV----PLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g----~~~~----~l~ell~~sDvV~l~lPlt 1021 (1128) +.|+++.|||.|..|++++..|...|+ +|.++++...+.+ +...+ +... ++.+.+.++|+|+++.|.. T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282) T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282) T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC Confidence 578999999999999999999999998 6888887655543 22211 1111 2335668899999999964 |
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
>PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=94.19 E-value=0.11 Score=58.39 Aligned_cols=103 Identities=18% Similarity=0.218 Sum_probs=60.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchh--hhhc--CCcc-cChHhhhccCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEE--GTAL--GAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~--~~~~--g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) .+|||||+|.||+.+++.+... ++++.+.-.+..... .... ++.. .+++++-...|+|+.|.|...- . + T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265) T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265) T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H Confidence 3799999999999999999765 566554432222211 1111 3333 4788885569999999984322 1 2 Q ss_pred HHHccCCCCcEEEEcCCCcccCH---HHHHHHHhcCC Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQ---EALVEFLKDKK 1064 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde---~aL~~aL~~g~ 1064 (1128) -..+.++.|.-++-.+-|.+.|. +.|.++.+++. T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g 113 (265) T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGG 113 (265) T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCC Confidence 23333445555555555555543 44555555543 |
|
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
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Probab=94.16 E-value=0.8 Score=52.64 Aligned_cols=95 Identities=23% Similarity=0.315 Sum_probs=65.4 Q ss_pred cCCCeEEEEEcC---hhhHHHHHHHhhCCCEEEEEeCCCCc-h-h----hhhcCCcc---cChHhhhccCCEEEEecCCC Q psy13054 954 LKGATVGIVGLG---NIGLETAKLLKAFKVSKILYTSRRVK-E-E----GTALGAQL---VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 954 L~gktvGIIG~G---~IG~~vA~~l~afG~~Vi~~d~~~~~-~-~----~~~~g~~~---~~l~ell~~sDvV~l~lPlt 1021 (1128) +.|++|++||-| ++.+..+..+..||++|.+..|..-. + . +.+.|... .++++.++.+|||...- .. T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~-~~ 226 (301) T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTR-IQ 226 (301) T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECC-cc Confidence 789999999995 99999999999999999998876532 1 1 12335432 48999999999998632 11 Q ss_pred cc------c------ccccCHHHHccCCCCcEEEEc-CCCc Q psy13054 1022 KD------T------EQLIGRKQFSLMKPTAILVNT-SRGG 1049 (1128) Q Consensus 1022 ~~------T------~~li~~~~l~~mk~ga~lIN~-aRG~ 1049 (1128) .+ . ..-++++.++.+|++++|.-+ =||. T Consensus 227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~ 267 (301) T TIGR00670 227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVD 267 (301) T ss_pred ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCc Confidence 00 0 123466777777777776633 3444 |
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
>PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
---|
Probab=94.14 E-value=0.13 Score=59.31 Aligned_cols=86 Identities=19% Similarity=0.231 Sum_probs=63.1 Q ss_pred CCeEEEEEcChhhHHHHHHHhhC-C-CEEEEEeCCCCchh-h----hhcCCcc---cChHhhhccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF-K-VSKILYTSRRVKEE-G----TALGAQL---VPLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af-G-~~Vi~~d~~~~~~~-~----~~~g~~~---~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) -++++|||.|..++.-++.+... . -+|.+|+++..+.+ . .+.+... .+.++++++||||+.+.|. +. T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315) T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315) T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC Confidence 47899999999999988877532 2 37888887776654 1 1223332 2789999999999988774 44 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) -+|+.+ .+|||+.++.+|. T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315) T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315) T ss_pred ceeCHH---HcCCCcEEEecCC Confidence 678765 4579999999973 |
|
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
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Probab=94.11 E-value=0.2 Score=64.11 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=79.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hc-------------CCccc-ChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------AL-------------GAQLV-PLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~-------------g~~~~-~l~ell~~ 1010 (1128) ++|+|||.|.||..+|..+...|++|+.||......+ .. +. .++.. ++ +.++. T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714) T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714) T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC Confidence 6799999999999999999999999999997654322 00 01 11111 34 44699 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEecc Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128) ||+|+=++|...+.+.=+=++.=+.++|+++|-....+ ++...|..+++. +=...++=-| T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff 452 (714) T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFF 452 (714) T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecC Confidence 99999999999888776656666788999998655443 556677777754 2234444444 |
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
---|
Probab=94.07 E-value=0.16 Score=50.06 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=68.3 Q ss_pred CeEEEEE----cChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 957 ATVGIVG----LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 957 ktvGIIG----~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) |+++||| -+..|..+.+.|+..|.+|+.+++....-. |.+ +.+++|.=...|++++++| .+.+..+++ T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~----G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~-- 73 (116) T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL----GIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVD-- 73 (116) T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET----TEE-BSSGGGCSST-SEEEE-S--HHHHHHHHH-- T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC----cEEeeccccCCCCCCCEEEEEcC-HHHHHHHHH-- Confidence 6899999 688999999999999999999987765432 333 4588884488999999999 334444553 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) .+..+..+.+++..+ ..++++.+.+++..+.-. T Consensus 74 ~~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~vi 106 (116) T PF13380_consen 74 EAAALGVKAVWLQPG----AESEELIEAAREAGIRVI 106 (116) T ss_dssp HHHHHT-SEEEE-TT----S--HHHHHHHHHTT-EEE T ss_pred HHHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEEE Confidence 445557889999988 677788888888766543 |
|
>PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
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Probab=94.04 E-value=0.11 Score=61.52 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=65.8 Q ss_pred CCeEEEEEcChhhHHHHHHHhh-CC--CEEEEEeCCCCchh--h---hhc--C---Ccc-cChHhhhccCCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKA-FK--VSKILYTSRRVKEE--G---TAL--G---AQL-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~a-fG--~~Vi~~d~~~~~~~--~---~~~--g---~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128) -+++||||.|..++.-++.+.. +. -+|.+|++...+.+ . .+. + +.. .+.++++++||||+.+.+.+ T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379) T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379) T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC Confidence 4689999999999999988865 32 37888887766543 1 111 2 222 37999999999999999865 Q ss_pred c---ccccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1022 K---DTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1022 ~---~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) . ++.-+|+.+ .+|||+.++.++.-+ T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~e 262 (379) T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAACR 262 (379) T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCccc Confidence 4 455778765 457999888776543 |
|
>PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
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Probab=94.00 E-value=0.78 Score=53.50 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=64.1 Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCcc---cChHhhhccCCEEEEec Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQL---VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~~---~~l~ell~~sDvV~l~l 1018 (1128) +.|++|++||=+ ++.+..+..+..||++|.++.|..-.+. .+..|.+. .++++.++.+|||..-. T Consensus 154 l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~ 233 (334) T PRK01713 154 LSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDV 233 (334) T ss_pred cCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcc Confidence 678999999986 6788888999999999998877643221 12234332 48999999999998732 Q ss_pred ----CCCc---c------cccccCHHHHccC-CCCcEEEEcC Q psy13054 1019 ----ALTK---D------TEQLIGRKQFSLM-KPTAILVNTS 1046 (1128) Q Consensus 1019 ----Plt~---~------T~~li~~~~l~~m-k~ga~lIN~a 1046 (1128) .... + -...++.+.++.+ |++++|.-+. T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334) T PRK01713 234 WVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334) T ss_pred eeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC Confidence 1100 0 1223677888875 7888887553 |
|
>PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
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Probab=93.88 E-value=0.62 Score=54.19 Aligned_cols=64 Identities=19% Similarity=0.248 Sum_probs=49.5 Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCcc---cChHhhhccCCEEEEe Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQL---VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~~---~~l~ell~~sDvV~l~ 1017 (1128) +.|++|++||-+ ++.+..+..+..||++|.+..|..-... ++..|... .++++.++.+|||..- T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331) T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331) T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc Confidence 789999999997 8889999999999999988876543221 11234432 4799999999999974 |
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>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
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Probab=93.86 E-value=0.052 Score=55.19 Aligned_cols=106 Identities=20% Similarity=0.272 Sum_probs=71.0 Q ss_pred EEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--------------Ch-HhhhccCCEEEEecCCCc Q psy13054 959 VGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--------------PL-DTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 959 vGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--------------~l-~ell~~sDvV~l~lPlt~ 1022 (1128) |+|+|.|.||..+|-+|+..|.+|.++.++. ..+ ..+.|.+.. +. .+-....|+|++++.. . T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~ 78 (151) T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y 78 (151) T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c Confidence 6899999999999999988999999998666 322 233333211 11 2467889999999884 4 Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ++...+.. .-...++++.+|-.--| +-.++.+.+.+...++.++ T Consensus 79 ~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g 122 (151) T PF02558_consen 79 QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG 122 (151) T ss_dssp GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE T ss_pred chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE Confidence 45555543 44455667777777666 4456666667656566554 |
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
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Probab=93.75 E-value=0.31 Score=55.90 Aligned_cols=116 Identities=21% Similarity=0.224 Sum_probs=80.4 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-----------hhcC-------------Ccc-cChHhhhc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-----------TALG-------------AQL-VPLDTLCA 1009 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-----------~~~g-------------~~~-~~l~ell~ 1009 (1128) -++|||||.|.||+.+|..+..-|..|+.+|.+..... + .+.| ++. .++. .++ T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307) T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307) T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc Confidence 47899999999999999999887799999998743211 0 0111 011 1122 689 Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) .||+|+=.+|.+-+.++-+=++.=+..||+++|=.-.++ +.-.++.++++. +=...++=.|-+ T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~r-per~iG~HFfNP 144 (307) T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALKR-PERFIGLHFFNP 144 (307) T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhCC-chhEEEEeccCC Confidence 999999999999888876656666777899998643333 456777788743 334556655543 |
|
>TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
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Probab=93.63 E-value=0.038 Score=65.22 Aligned_cols=49 Identities=16% Similarity=0.448 Sum_probs=40.6 Q ss_pred CHHHHhhcCCEEEEecCCC-cccccccCHHHHhcCCCCcEEEEec--CCCcc Q psy13054 313 PLDTLCAESDFIFVTCALT-KDTEQLIGRKQFSLMKPTAILINTS--RGGLL 361 (1128) Q Consensus 313 sLdeLl~~SDiVslh~PLT-~~T~~lIn~~~l~~MK~gaiLINta--RG~lV 361 (1128) ++++.++++|+|+.+++.+ ..+.++|+++.+++||+++++|++| .|+.+ T Consensus 223 ~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~~ 274 (370) T TIGR00518 223 EIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGCV 274 (370) T ss_pred HHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCCc Confidence 5778899999999998764 3467799999999999999999987 44443 |
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=93.56 E-value=0.16 Score=59.80 Aligned_cols=96 Identities=14% Similarity=0.219 Sum_probs=64.9 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCC-------CEEEEEeCCCCc-----hh-hhh--c------C------Ccc-cChHhh Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFK-------VSKILYTSRRVK-----EE-GTA--L------G------AQL-VPLDTL 1007 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG-------~~Vi~~d~~~~~-----~~-~~~--~------g------~~~-~~l~el 1007 (1128) -.+|+|||.|..|.++|..|..-| .+|..|.++... .+ ..+ . + +.. .+++++ T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365) T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365) T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH Confidence 358999999999999999997554 789888765431 11 110 0 1 111 368889 Q ss_pred hccCCEEEEecCCCcccccccCHHHHc--cCCCCcEEEEcCCCcccCH Q psy13054 1008 CAESDFIFVTCALTKDTEQLIGRKQFS--LMKPTAILVNTSRGGLLDQ 1053 (1128) Q Consensus 1008 l~~sDvV~l~lPlt~~T~~li~~~~l~--~mk~ga~lIN~aRG~lVde 1053 (1128) ++.+|+|++++| ....+.++.+ .-. .+++++++|+++-|=-.++ T Consensus 91 v~~aDiIvlAVP-sq~l~~vl~~-l~~~~~l~~~~~iIS~aKGIe~~t 136 (365) T PTZ00345 91 VEDADLLIFVIP-HQFLESVLSQ-IKENNNLKKHARAISLTKGIIVEN 136 (365) T ss_pred HhcCCEEEEEcC-hHHHHHHHHH-hccccccCCCCEEEEEeCCcccCC Confidence 999999999999 3344444421 112 4566889999988855443 |
|
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Probab=93.51 E-value=0.4 Score=56.24 Aligned_cols=135 Identities=17% Similarity=0.252 Sum_probs=95.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC---------------------Ccc-cChHhhhccCCEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALG---------------------AQL-VPLDTLCAESDFI 1014 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g---------------------~~~-~~l~ell~~sDvV 1014 (1128) ++|.|+|.|.+|...+-.+..+|.+|+.+|....+-+.-..| ... .+.++.++.||++ T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414) T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414) T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE Confidence 478999999999999999999999999998766543311111 112 2677889999999 Q ss_pred EEecCCCcccccccCH--------HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec-cCCCCCCCCCccc Q psy13054 1015 FVTCALTKDTEQLIGR--------KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV-MIPEPLPADHPLV 1085 (1128) Q Consensus 1015 ~l~lPlt~~T~~li~~--------~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV-~e~EPl~~~~pL~ 1085 (1128) ++++|-.+.-.|-+|- +..+.++..+++|+=|.-.+=..+.+.+-+.+..-.. -.+| +-||=|-+.+.+. T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414) T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414) T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh Confidence 9999966655555553 3456677779999999888877777776655543222 2333 5677777777666 Q ss_pred cC---CCeEE Q psy13054 1086 QL---DNCVL 1092 (1128) Q Consensus 1086 ~~---pNvil 1092 (1128) +. +++++ T Consensus 160 D~~~PdRIVi 169 (414) T COG1004 160 DFLYPDRIVI 169 (414) T ss_pred hccCCCeEEE Confidence 53 45654 |
|
>PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
---|
Probab=93.47 E-value=0.82 Score=53.27 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=61.7 Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCcc---cChHhhhccCCEEEEec Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQL---VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~~---~~l~ell~~sDvV~l~l 1018 (1128) +.|++|++||-+ ++.+..+..+..||++|.+..|..-.+. +...|.+. .++++.++.+|+|..-. T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332) T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332) T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC Confidence 678999999975 8889999999999999998877532221 11234322 48999999999999742 Q ss_pred C--CCc------c-----cccccCHHHHccCC-CCcEEEEc Q psy13054 1019 A--LTK------D-----TEQLIGRKQFSLMK-PTAILVNT 1045 (1128) Q Consensus 1019 P--lt~------~-----T~~li~~~~l~~mk-~ga~lIN~ 1045 (1128) = ... + -...++++.++.+| |+++|.-+ T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHp 273 (332) T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHC 273 (332) T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECC Confidence 1 000 0 12235667777765 46666554 |
|
>PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
---|
Probab=93.46 E-value=1 Score=51.82 Aligned_cols=92 Identities=22% Similarity=0.314 Sum_probs=61.1 Q ss_pred cCCCeEEEEEcC---hhhHHHHHHHhhC-CCEEEEEeCCCCch--h----hhhcCCcc---cChHhhhccCCEEEEecCC Q psy13054 954 LKGATVGIVGLG---NIGLETAKLLKAF-KVSKILYTSRRVKE--E----GTALGAQL---VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 954 L~gktvGIIG~G---~IG~~vA~~l~af-G~~Vi~~d~~~~~~--~----~~~~g~~~---~~l~ell~~sDvV~l~lPl 1020 (1128) +.|++|++||-+ ++.+..+..+..| |+++.+..|..-.. . +.+.|... .++++.++.+|||....-. T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q 228 (306) T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ 228 (306) T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc Confidence 679999999976 6788888888887 99998887654211 1 12234432 4899999999999984321 Q ss_pred Cc------c------cccccCHHHHccCCCCcEEEEc Q psy13054 1021 TK------D------TEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1021 t~------~------T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) .+ + -...++++.++.+|++++|.-+ T Consensus 229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306) T PLN02527 229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306) T ss_pred hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC Confidence 00 0 1134566666666666666533 |
|
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
---|
Probab=93.46 E-value=0.16 Score=59.55 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=56.1 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhC-CCEEE-EEeCCCCchh-hh-hc----C-----CcccChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAF-KVSKI-LYTSRRVKEE-GT-AL----G-----AQLVPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~af-G~~Vi-~~d~~~~~~~-~~-~~----g-----~~~~~l~ell~~sDvV~l~lPlt~ 1022 (1128) .+|+|||. |.+|+.+++.|... +.+++ +++++..... .. .. + +...+.++++.++|+|++|+|.. T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346) T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346) T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch- Confidence 37999998 99999999999887 77877 4465542221 11 11 1 11124566767899999999944 Q ss_pred ccccccCHHHHccC-CCCcEEEEcCCC Q psy13054 1023 DTEQLIGRKQFSLM-KPTAILVNTSRG 1048 (1128) Q Consensus 1023 ~T~~li~~~~l~~m-k~ga~lIN~aRG 1048 (1128) . .++....+ +.|..+|+.|-. T Consensus 80 ~-----s~~~~~~~~~~G~~VIDlS~~ 101 (346) T TIGR01850 80 V-----SAELAPELLAAGVKVIDLSAD 101 (346) T ss_pred H-----HHHHHHHHHhCCCEEEeCChh Confidence 2 23333333 568888888733 |
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
>PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=93.41 E-value=0.19 Score=58.30 Aligned_cols=114 Identities=21% Similarity=0.215 Sum_probs=72.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hh----h---cC----Ccc-cChHhhhccCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GT----A---LG----AQL-VPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~----~---~g----~~~-~~l~ell~~sDvV~l~lP 1019 (1128) ..++|+|||.|.+|..+|..+...| ++++++|...+... .. . .+ +.. .+. +.++.||+|+++.- T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~tag 83 (321) T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTAG 83 (321) T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECCC Confidence 4478999999999999999988777 48999997766332 11 0 11 121 245 56799999999773 Q ss_pred CCc----------------ccccccCH--HHHccCCCCcEEEEcCCCcccCHHHHHHHHh--cCCceEEE Q psy13054 1020 LTK----------------DTEQLIGR--KQFSLMKPTAILVNTSRGGLLDQEALVEFLK--DKKIGGAG 1069 (1128) Q Consensus 1020 lt~----------------~T~~li~~--~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~--~g~i~gaa 1069 (1128) ... ++..++.+ +.+....|.+.+||.+-..-+-...+.+... ..++.|.+ T Consensus 84 ~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321) T PTZ00082 84 LTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321) T ss_pred CCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec Confidence 211 11111210 2345556788999998655555555555432 34677766 |
|
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=93.39 E-value=0.12 Score=63.13 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=70.9 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc---ChHhhhccCCEEEEecCCCccccc--- Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQ--- 1026 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~~--- 1026 (1128) ..|+++.|+|+|.+|.+.++.|+..|++|+++|....... ..+.|+... ...+.++.+|+|+..- .-+.+.- T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp-Gi~~~~p~~~ 88 (488) T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP-GFRPTAPVLA 88 (488) T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC-CCCCCCHHHH Confidence 4789999999999999999999999999999986543322 334466543 2345677899877654 3333221 Q ss_pred --------ccCHHHHc-cC--------CCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1027 --------LIGRKQFS-LM--------KPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1027 --------li~~~~l~-~m--------k~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ++++-.|. .. +...+=|-=+-|+.-...-+...|+. T Consensus 89 ~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~ 141 (488) T PRK03369 89 AAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA 141 (488) T ss_pred HHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH Confidence 33332332 11 11345566678888777777777765 |
|
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
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Probab=93.39 E-value=0.12 Score=51.53 Aligned_cols=100 Identities=23% Similarity=0.200 Sum_probs=55.6 Q ss_pred eEEEEEc-ChhhHHHHHHHhh-CCCEEEEEeCCCCch-hh---------hhcCCcc-cChHhhhccCCEEEEecCCCccc Q psy13054 958 TVGIVGL-GNIGLETAKLLKA-FKVSKILYTSRRVKE-EG---------TALGAQL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 958 tvGIIG~-G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~-~~---------~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) +|+|+|+ |+||+.+++.+.. -|+++++.-.+.+.+ .. ...++.. .++++++.++|+|+-.. ..+.+ T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~ 80 (124) T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV 80 (124) T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh Confidence 6999999 9999999999987 688866654444411 11 1223332 47999999999988655 22223 Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ...+ -..++.+.-+|--..|---.+.+.++.+.+ T Consensus 81 ~~~~----~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124) T PF01113_consen 81 YDNL----EYALKHGVPLVIGTTGFSDEQIDELEELAK 114 (124) T ss_dssp HHHH----HHHHHHT-EEEEE-SSSHHHHHHHHHHHTT T ss_pred HHHH----HHHHhCCCCEEEECCCCCHHHHHHHHHHhc Confidence 2222 111233555555445553333344444433 |
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
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Probab=93.35 E-value=0.1 Score=51.44 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=51.4 Q ss_pred eEEEEE-cChhhHHHHHHHh-hCCCEEEEEeCCCC-chh--hhhc----CCccc---C-hHhhhccCCEEEEecCCCccc Q psy13054 958 TVGIVG-LGNIGLETAKLLK-AFKVSKILYTSRRV-KEE--GTAL----GAQLV---P-LDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 958 tvGIIG-~G~IG~~vA~~l~-afG~~Vi~~d~~~~-~~~--~~~~----g~~~~---~-l~ell~~sDvV~l~lPlt~~T 1024 (1128) +||||| .|.+|+.+.++|. ...++++....+.. ... .... +.... + -.+.+.++|+|+.|+|.... T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121) T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121) T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH- T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH- Confidence 699999 9999999999996 45666555444444 111 1111 11111 1 22445999999999994422 Q ss_pred ccccCHHHHccCCCCcEEEEcCCC Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) +.+.. .. .++|..+|+.|.. T Consensus 80 ~~~~~-~~---~~~g~~ViD~s~~ 99 (121) T PF01118_consen 80 KELAP-KL---LKAGIKVIDLSGD 99 (121) T ss_dssp HHHHH-HH---HHTTSEEEESSST T ss_pred HHHHH-HH---hhCCcEEEeCCHH Confidence 22221 11 4778899988654 |
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
---|
Probab=93.26 E-value=0.091 Score=61.28 Aligned_cols=80 Identities=24% Similarity=0.234 Sum_probs=56.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCC---------------------chh-h----hh--cCCc--- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRV---------------------KEE-G----TA--LGAQ--- 1000 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~---------------------~~~-~----~~--~g~~--- 1000 (1128) .|.+++|.|||.|.+|..+|+.|...|. ++.++|+..- +.+ + .+ ..++ T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338) T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338) T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE Confidence 6899999999999999999999999997 7777887541 111 0 00 0111 Q ss_pred ------ccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 1001 ------LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 1001 ------~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) ..+++++++++|+|+.++ .+.+++-++|.-.. T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~ 138 (338) T PRK12475 101 VVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQ 138 (338) T ss_pred EeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHH Confidence 113567888889888877 56777777765433 |
|
>PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
---|
Probab=93.20 E-value=0.18 Score=56.59 Aligned_cols=63 Identities=19% Similarity=0.247 Sum_probs=45.0 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhC-CCEEEE-EeCCCCchh-hhhcCCc-ccChHhhhccCCEEEEecC Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAF-KVSKIL-YTSRRVKEE-GTALGAQ-LVPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~af-G~~Vi~-~d~~~~~~~-~~~~g~~-~~~l~ell~~sDvV~l~lP 1019 (1128) .+|+|+|+ |+||+.+++.+... ++++++ +|+...... ....++. +.+++++++.+|+|+.++| T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257) T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257) T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC Confidence 37999998 99999999998764 788776 444333221 1223332 3589999989999998776 |
|
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
---|
Probab=93.14 E-value=0.045 Score=63.36 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=37.2 Q ss_pred CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEec Q psy13054 313 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTS 356 (1128) Q Consensus 313 sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINta 356 (1128) ++++|+..+|+|+.| |+.+.|+.|++.+.+|+++++|+-.- T Consensus 68 ~~eeLl~~vDiVve~---Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333) T TIGR01546 68 TLEDLLEKVDIVVDA---TPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333) T ss_pred CHHHHhhcCCEEEEC---CCCCCChhhHHHHHhCCcCEEEECCC Confidence 799999999999976 57899999999999999999999754 |
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
---|
Probab=93.13 E-value=0.12 Score=57.96 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=75.2 Q ss_pred EEEEEc-ChhhHHHHHHHhhCC----CEEEEEeCCCCchh--hhh------c--C--Ccc-cChHhhhccCCEEEEecCC Q psy13054 959 VGIVGL-GNIGLETAKLLKAFK----VSKILYTSRRVKEE--GTA------L--G--AQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 959 vGIIG~-G~IG~~vA~~l~afG----~~Vi~~d~~~~~~~--~~~------~--g--~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) |+|||. |.+|..+|..+...| -++..||....+.. ..+ . . +.. .++.+.++.||+|+++.-. T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263) T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263) T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC Confidence 589999 999999999998777 78999997665433 111 0 1 111 2457899999999996532 Q ss_pred Cccccc------------ccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE-EeccC Q psy13054 1021 TKDTEQ------------LIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG-LDVMI 1074 (1128) Q Consensus 1021 t~~T~~------------li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa-LDV~e 1074 (1128) +...+ ++. .+.+++..|++++||.+-..=+-...+.+. +...++.|.+ +|... T Consensus 81 -~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r 150 (263) T cd00650 81 -GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIR 150 (263) T ss_pred -CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHH Confidence 11111 111 123455568999999974444444455555 4667888988 88643 |
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
>PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
---|
Probab=93.13 E-value=1.2 Score=52.11 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=62.7 Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh------hhhcC---Ccc-cChHhhhccCCEEEEec---- Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE------GTALG---AQL-VPLDTLCAESDFIFVTC---- 1018 (1128) Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~------~~~~g---~~~-~~l~ell~~sDvV~l~l---- 1018 (1128) +.|++|++||= .++.+..+..+..||++|.++.|..-.+. +.+.| +.. .++++.++.+|||..-. T Consensus 192 l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~ 271 (348) T PLN02342 192 LEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASM 271 (348) T ss_pred cCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCcccc Confidence 67999999997 46888888889999999988876653321 12233 222 47999999999999753 Q ss_pred CCCcc--------cccccCHHHHccCCCCcEEEEc Q psy13054 1019 ALTKD--------TEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1019 Plt~~--------T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) -..++ ....++++.++.+|++++|.-+ T Consensus 272 ~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHp 306 (348) T PLN02342 272 GQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHC 306 (348) T ss_pred ccchhhHHHHHhccCCccCHHHHhccCCCcEEeCC Confidence 11111 1134577777777777766554 |
|
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
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Probab=93.08 E-value=0.2 Score=57.55 Aligned_cols=91 Identities=19% Similarity=0.261 Sum_probs=60.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhhc-------CC--cc-cChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTAL-------GA--QL-VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~~-------g~--~~-~~l~ell~~sDvV~l~lPlt~ 1022 (1128) ++|+|||.|.+|+.+|..|...|. +++++|....+.. ..+. +. .. ..-.+.++.||+|+++..... T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~ 80 (306) T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ 80 (306) T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC Confidence 479999999999999999988884 7999998766544 1111 11 11 122345789999999887431 Q ss_pred c---cc--------cccC--HHHHccCCCCcEEEEcCC Q psy13054 1023 D---TE--------QLIG--RKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1023 ~---T~--------~li~--~~~l~~mk~ga~lIN~aR 1047 (1128) . +| .++. .+.+.+..|.+++|+++- T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306) T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC Confidence 1 11 1110 123556678999999983 |
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
>PLN02256 arogenate dehydrogenase | Back alignment and domain information |
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Probab=93.07 E-value=0.11 Score=59.77 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=32.4 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) -++++|||||+|.||+.+|+.++.+|.++++|+++ T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304) T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304) T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc Confidence 36789999999999999999999999999999975 |
|
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
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Probab=93.02 E-value=0.07 Score=60.49 Aligned_cols=105 Identities=20% Similarity=0.158 Sum_probs=77.5 Q ss_pred eeCCCCCCCCccccccCCccccceeecccccccc---cccccCCccc-CHHHHhhcCCEEEEecCCCcccccccC--HHH Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS---NGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQ 342 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~---~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn--~~~ 342 (1128) ++|+|..|...|++....+ ..+..|++.+.. .....|.+.+ +..|+.++||+|+.++|-.++-+..+- ... T Consensus 5 fIGLG~MG~pmA~~L~~aG---~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~ 81 (286) T COG2084 5 FIGLGIMGSPMAANLLKAG---HEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGL 81 (286) T ss_pred EEcCchhhHHHHHHHHHCC---CEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccch Confidence 5677777777766432221 234445543322 1234466655 778999999999999999999877765 678 Q ss_pred HhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 343 FSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 343 l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) ++.||||.++|+.+=-+--....+.++++.+-+. T Consensus 82 ~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~ 115 (286) T COG2084 82 LEGLKPGAIVIDMSTISPETARELAAALAAKGLE 115 (286) T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc Confidence 8999999999999988888888899999987654 |
|
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
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Probab=92.89 E-value=0.4 Score=55.63 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=64.5 Q ss_pred CCeEEEEEcChhhHHHHHHHhh-CCC-EEEEEeCCCCchh--h----hhcC--Ccc-cChHhhhccCCEEEEecCCCccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKA-FKV-SKILYTSRRVKEE--G----TALG--AQL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~a-fG~-~Vi~~d~~~~~~~--~----~~~g--~~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) -+++||||.|..++.-++.++. ++. +|.+|+++....+ . ...+ +.. .+.+++++.||+|+.+.|.++ T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330) T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330) T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC-- Confidence 4679999999999999998864 444 6778877666554 1 1222 223 378999999999999999776 Q ss_pred ccccCHHHHccCCCCcEEEEcCC Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) -++..+.+ |||+.+..+|- T Consensus 208 -Pil~~~~l---~~G~hI~aiGa 226 (330) T COG2423 208 -PVLKAEWL---KPGTHINAIGA 226 (330) T ss_pred -CeecHhhc---CCCcEEEecCC Confidence 57776555 59999999984 |
|
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=92.83 E-value=1 Score=54.30 Aligned_cols=155 Identities=16% Similarity=0.093 Sum_probs=89.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC--------Cch-hh--------------hh-----cCCcccCh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR--------VKE-EG--------------TA-----LGAQLVPL 1004 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~--------~~~-~~--------------~~-----~g~~~~~l 1004 (1128) ++.|+||.|=|+|++|+..|+.|..+|++|+.+.+.. -.. .. .+ .+.++.+- T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~ 313 (454) T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPG 313 (454) T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCC Confidence 4899999999999999999999999999999443332 000 00 00 12334444 Q ss_pred Hhhh-ccCCEEEEecCCCcccccccCHHHHccC-CCCcEEEE-cCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC Q psy13054 1005 DTLC-AESDFIFVTCALTKDTEQLIGRKQFSLM-KPTAILVN-TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128) Q Consensus 1005 ~ell-~~sDvV~l~lPlt~~T~~li~~~~l~~m-k~ga~lIN-~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128) ++++ -.|||.+-|. |.+.|+.+..+.+ +.++.+|- -+-+.+ ..+ -.+.|++..|..+ =|...+-=--.- T Consensus 314 ~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~~~-PD~~aNAGGV~v 385 (454) T PTZ00079 314 KKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVIFC-PGKAANAGGVAI 385 (454) T ss_pred cCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcEEE-ChhhhcCCCeee Confidence 4444 3588888554 6678888887766 55555554 455554 444 4466777766554 232222100000 Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHH Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRG 1118 (1128) Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~ 1118 (1128) +-|=-..|.. +..|.-++..+++-+++.+...+. T Consensus 386 S~~E~~Qn~~---~~~W~~eeV~~~L~~~M~~~~~~~ 419 (454) T PTZ00079 386 SGLEMSQNAA---RLQWTAEEVDEKLREIMKSIFEAC 419 (454) T ss_pred ehHHhhhhhc---ccCCCHHHHHHHHHHHHHHHHHHH Confidence 1111122332 566666777777666665544433 |
|
>PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
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Probab=92.72 E-value=0.32 Score=55.90 Aligned_cols=86 Identities=10% Similarity=0.068 Sum_probs=61.5 Q ss_pred CCeEEEEEcChhhHHHHHHHhhC-CC-EEEEEeCCCCchh--hhh----cCC--cc-cChHhhhccCCEEEEecCCCccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF-KV-SKILYTSRRVKEE--GTA----LGA--QL-VPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af-G~-~Vi~~d~~~~~~~--~~~----~g~--~~-~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) -+++||||.|..|+.-++.+... .. +|.+|+++..+.. ..+ .++ .. .+.++++++||+|+.+.|.+ T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301) T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301) T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC--- Confidence 47899999999999888777543 33 6788887766544 111 243 22 37999999999999988844 Q ss_pred ccccCHHHHccCCCCcEEEEcCC Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .-+|+.+. +|||+.++-+|. T Consensus 194 ~P~~~~~~---l~pg~hV~aiGs 213 (301) T PRK06407 194 TPIFNRKY---LGDEYHVNLAGS 213 (301) T ss_pred CcEecHHH---cCCCceEEecCC Confidence 46787664 478877776664 |
|
>PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
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Probab=92.70 E-value=0.33 Score=56.85 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=60.2 Q ss_pred CCeEEEEEcChhhHHHHHHHh-hCCC-EEEEEeCCCCchh--h---hhcCCc--c-cChHhhhccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLK-AFKV-SKILYTSRRVKEE--G---TALGAQ--L-VPLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~-afG~-~Vi~~d~~~~~~~--~---~~~g~~--~-~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) -++++|||.|..++.-++.+. -+.. +|.+|++...+.+ . .+.++. . .++++++++||+|+.+.|.+ ++. T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346) T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346) T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC Confidence 368999999999988876553 3333 6778877665543 1 112332 2 37999999999999998743 222 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) -+|..+ .+|||+.++-+|. T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346) T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346) T ss_pred ceecHH---HcCCCcEEEecCC Confidence 456654 4589998877653 |
|
>PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
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Probab=92.54 E-value=0.25 Score=56.63 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=69.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhh--hh---c----C--Cc--c-cChHhhhccCCEEEEecC-- Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG--TA---L----G--AQ--L-VPLDTLCAESDFIFVTCA-- 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~--~~---~----g--~~--~-~~l~ell~~sDvV~l~lP-- 1019 (1128) ++|+|||.|.+|..+|..+...|. +|+++|........ .+ . + .+ . .+. +.++.||+|+++.. T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p 81 (307) T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP 81 (307) T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC Confidence 589999999999999999987654 99999976544321 11 1 1 11 1 234 45799999999863 Q ss_pred CCcc---------cccccCH--HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE--Ee Q psy13054 1020 LTKD---------TEQLIGR--KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG--LD 1071 (1128) Q Consensus 1020 lt~~---------T~~li~~--~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa--LD 1071 (1128) ..+. +..++.. +.+....+.+++|+.+-..=+-...+.+. +...++.|.+ || T Consensus 82 ~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~ld 148 (307) T PRK06223 82 RKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLD 148 (307) T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcH Confidence 2111 1111210 12334446788888876555555555553 2234677764 55 |
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>PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
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Probab=92.50 E-value=0.056 Score=58.79 Aligned_cols=60 Identities=10% Similarity=0.163 Sum_probs=47.6 Q ss_pred CHHHHhhc--CCEEEEecCCCcc---cccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHc Q psy13054 313 PLDTLCAE--SDFIFVTCALTKD---TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372 (1128) Q Consensus 313 sLdeLl~~--SDiVslh~PLT~~---T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128) ++++++++ .|+|++++|.+.. ...+.......-|...++.+|+.||.+|+.++|..+|.. T Consensus 137 ~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213) T PRK05472 137 ELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213) T ss_pred HHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH Confidence 68888866 9999999998765 333444444556677889999999999999999999874 |
|
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
---|
Probab=92.47 E-value=0.12 Score=48.39 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=28.4 Q ss_pred EEEEEecChhhHHHHHHHhhCC---CeEEEEcCCCcc Q psy13054 703 TVGIVGLGNIGLETAKLLKAFK---VSKILYTSRRVK 736 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg---~~vi~y~~~~~~ 736 (1128) ||||||+|++|+++++.+..-| .++..+.+|+++ T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96) T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96) T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH Confidence 6999999999999999999999 888856444443 |
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
---|
Probab=92.41 E-value=0.57 Score=48.72 Aligned_cols=92 Identities=17% Similarity=0.281 Sum_probs=65.4 Q ss_pred CCCeEEEEE--cChhhHHHHHHHhhCCCEEEEEeCCCC--ch--h-h-------hhcCC--cc-cChHhhhccCCEEEEe Q psy13054 955 KGATVGIVG--LGNIGLETAKLLKAFKVSKILYTSRRV--KE--E-G-------TALGA--QL-VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 955 ~gktvGIIG--~G~IG~~vA~~l~afG~~Vi~~d~~~~--~~--~-~-------~~~g~--~~-~~l~ell~~sDvV~l~ 1017 (1128) .|++|++|| .+++.+.++..+..||+++.++.|..- .. . . ...|. +. .+++|.++++|||..- T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158) T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158) T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc Confidence 388999999 389999999999999999888877652 12 1 1 11232 22 4899999999999865 Q ss_pred cCCC---cc--------cccccCHHHHccCCCCcEEEEcC Q psy13054 1018 CALT---KD--------TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1018 lPlt---~~--------T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .--. .+ ....++++.++.+|++++|.-+. T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158) T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158) T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC Confidence 5441 11 11457889999999999888774 |
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
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Probab=92.39 E-value=0.16 Score=55.89 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=50.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh-hh--cCCcc--------cChHhh-hccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG-TA--LGAQL--------VPLDTL-CAESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~-~~--~g~~~--------~~l~el-l~~sDvV~l~lPlt~~ 1023 (1128) +++.|||+|++|..+|+.|...|+.|++.|....+... .. .+... ..|.++ +.++|+++.....+.. T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225) T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225) T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH Confidence 57899999999999999999999999999987766442 22 22221 135565 7889999998886544 |
|
>PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
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Probab=92.32 E-value=1.6 Score=51.02 Aligned_cols=94 Identities=12% Similarity=0.191 Sum_probs=65.3 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCch--hh--------hhcCC--cc-cChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKE--EG--------TALGA--QL-VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~--~~--------~~~g~--~~-~~l~ell~~sDvV~l~l 1018 (1128) .+.|++|++||= .++.+..+..+..||++|.++.|..-.. .. +..|. .. .++++.++.+|||..-. T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338) T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338) T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc Confidence 378999999998 6888888999999999999987764211 11 11243 22 48999999999999832 Q ss_pred -----CCCc---c------cccccCHHHHccCCCCcEEEEcC Q psy13054 1019 -----ALTK---D------TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1019 -----Plt~---~------T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .... + -...++++.++.+|++++|.-+. T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL 272 (338) T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL 272 (338) T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC Confidence 2100 0 12456788888888888776653 |
|
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
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Probab=92.15 E-value=0.085 Score=59.96 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=51.0 Q ss_pred cCCccc-CHHHHhhcCCEEEEecCCCcccccccC--HHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEe Q psy13054 307 LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381 (1128) Q Consensus 307 ~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn--~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLD 381 (1128) .|+... ++.+++++||+|++++|-....+.++. ...++.+++|.++||++=-..=....+.+.+++..+. -+| T Consensus 38 ~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd 113 (288) T TIGR01692 38 AGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD 113 (288) T ss_pred cCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE Confidence 344433 899999999999999998777777763 4456788999999999833322335566666654332 355 |
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
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Probab=92.02 E-value=0.16 Score=56.58 Aligned_cols=82 Identities=26% Similarity=0.264 Sum_probs=54.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hh----------------------hc--CCc----- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GT----------------------AL--GAQ----- 1000 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~----------------------~~--g~~----- 1000 (1128) .|..++|+|||+|.+|..+++.|...|. ++.++|...-... .+ +. .++ T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245) T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245) T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe Confidence 6899999999999999999999998887 5666665432211 00 00 010 Q ss_pred ----ccChHhhhccCCEEEEecCCCcccccccCHHHHcc Q psy13054 1001 ----LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 (1128) Q Consensus 1001 ----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~ 1035 (1128) ...++++++++|+|+.++ .+.+++..+++-..+. T Consensus 109 ~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~ 146 (245) T PRK05690 109 ARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAA 146 (245) T ss_pred ccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHh Confidence 012346778888888776 4667777777554444 |
|
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
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Probab=91.95 E-value=0.4 Score=59.34 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=46.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhh---h-ccCCEEEEecCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTL---C-AESDFIFVTCAL 1020 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~el---l-~~sDvV~l~lPl 1020 (1128) .+.+|++.|+|.|.+|++++..|...|++|+++++...+.+ ....+....+++++ . ..+|+|+++.|. T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v 449 (529) T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV 449 (529) T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC Confidence 47899999999999999999999999999998876544333 22222222233322 2 346777777664 |
|
>KOG2653|consensus | Back alignment and domain information |
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Probab=91.95 E-value=1.5 Score=50.56 Aligned_cols=158 Identities=17% Similarity=0.187 Sum_probs=118.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---h-hhcCCc---ccChHhh---hccCCEEEEecCCCccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---G-TALGAQ---LVPLDTL---CAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~-~~~g~~---~~~l~el---l~~sDvV~l~lPlt~~T~~ 1026 (1128) ..+|+||++.||+-++-....-|+.|.+|++...+.+ + +..+.. ..|++++ ++.-.+|++.+-...-... T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487) T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487) T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH Confidence 4589999999999999999999999999998887754 1 122222 2477776 4567788887776666655 Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHH Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~ 1106 (1128) +|. +....|.+|-++|+-+...--|+.--.+.|....|-..+.-|.-.|--....|-+ +-|.+.+++.+ T Consensus 87 ~I~-~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSl----------MpGg~~~Awp~ 155 (487) T KOG2653|consen 87 FIE-ELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSL----------MPGGSKEAWPH 155 (487) T ss_pred HHH-HHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCcc----------CCCCChHHHHH Confidence 664 6778899999999999999999999999999999999999998877633323322 22778888888 Q ss_pred HHHHHHHHHHHHHcCCCCC Q psy13054 1107 KSSTSAENIIRGYKGEPMI 1125 (1128) Q Consensus 1107 ~~~~~~~nl~~~l~G~~l~ 1125 (1128) +-.++..--...-.|+|+. T Consensus 156 ik~ifq~iaakv~~~epCc 174 (487) T KOG2653|consen 156 IKDIFQKIAAKVSDGEPCC 174 (487) T ss_pred HHHHHHHHHHHhcCCCCCe Confidence 7776655444445677764 |
|
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=91.93 E-value=0.31 Score=56.99 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=44.7 Q ss_pred eEEEEEcChhhHHHHHHHhh-CCCEEEEEeCCCCchh---hhhcC------------------Ccc-cChHhhhccCCEE Q psy13054 958 TVGIVGLGNIGLETAKLLKA-FKVSKILYTSRRVKEE---GTALG------------------AQL-VPLDTLCAESDFI 1014 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~~---~~~~g------------------~~~-~~l~ell~~sDvV 1014 (1128) +|||+|+|+||+.+++.+.. -+|++++.....+... +...| +.. .++++++..+|+| T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV 82 (341) T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV 82 (341) T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE Confidence 79999999999999998864 4788888766433111 11111 111 2577888899999 Q ss_pred EEecCCC Q psy13054 1015 FVTCALT 1021 (1128) Q Consensus 1015 ~l~lPlt 1021 (1128) +.|.|.. T Consensus 83 IdaT~~~ 89 (341) T PRK04207 83 VDATPGG 89 (341) T ss_pred EECCCch Confidence 9998743 |
|
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
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Probab=91.84 E-value=0.67 Score=52.76 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=68.9 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC-----CcccChHhhh--ccCCEEEEecCCCcc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG-----AQLVPLDTLC--AESDFIFVTCALTKD 1023 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g-----~~~~~l~ell--~~sDvV~l~lPlt~~ 1023 (1128) ..|+++.|+|.|-.+++++.-|+..|+ ++.++++..++.+ +...+ +....+.++- .++|+|++++|..-. T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~ 203 (283) T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMA 203 (283) T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCC Confidence 578999999999999999999999995 7999998777654 22221 1122333222 269999999996533 Q ss_pred cc---cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1024 TE---QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1024 T~---~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) -. -+++ .+.++++.++.++--... ++.=|..|=+.| T Consensus 204 ~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283) T COG0169 204 GPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283) T ss_pred CCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC Confidence 32 1333 455667777777655543 344444444434 |
|
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
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Probab=91.83 E-value=1.9 Score=49.83 Aligned_cols=63 Identities=16% Similarity=0.087 Sum_probs=48.2 Q ss_pred cCCCeEEEEEc---ChhhHHHHHHHhhCCC-EEEEEeCCCCchhhh-hcCCcc-cChHhhhccCCEEEE Q psy13054 954 LKGATVGIVGL---GNIGLETAKLLKAFKV-SKILYTSRRVKEEGT-ALGAQL-VPLDTLCAESDFIFV 1016 (1128) Q Consensus 954 L~gktvGIIG~---G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~~-~~g~~~-~~l~ell~~sDvV~l 1016 (1128) +.|.+|++||- +++.+..+..+..||+ ++.+..|..-.+... ...++. .++++.++.+|||.. T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310) T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310) T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE Confidence 67899999998 5999999999999999 888887654322211 112333 479999999999986 |
|
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
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Probab=91.72 E-value=0.085 Score=58.01 Aligned_cols=150 Identities=22% Similarity=0.167 Sum_probs=87.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hh-------hcC-----------------Cc--c-- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GT-------ALG-----------------AQ--L-- 1001 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~-------~~g-----------------~~--~-- 1001 (1128) .|.+++|.|||+|.+|..+|+.|...|. ++.++|+..-... .+ +.| ++ . T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228) T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228) T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec Confidence 6899999999999999999999999998 5666655432111 00 011 11 0 Q ss_pred -----cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC Q psy13054 1002 -----VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 1076 (1128) Q Consensus 1002 -----~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E 1076 (1128) .+++++++++|+|+.|+. +++++..+++...+ .+.-+|..+-. | ..|. +-++.+. T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~~--------------g-~~g~-v~~~~p~ 157 (228) T cd00757 98 ERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAVL--------------G-FEGQ-VTVFIPG 157 (228) T ss_pred ceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEec--------------c-CEEE-EEEECCC Confidence 124567888999888766 66777777755444 34556665421 1 1222 1222221 Q ss_pred --CCCCC-CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC Q psy13054 1077 --PLPAD-HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1077 --Pl~~~-~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) |--.. -+....++ .-++..++...-...-++.+.+.++.+++.|.+ T Consensus 158 ~~~c~~c~~~~~~~~~-~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~ 206 (228) T cd00757 158 EGPCYRCLFPEPPPPG-VPSCAEAGVLGPLVGVIGSLQALEALKILLGIG 206 (228) T ss_pred CCCCccccCCCCCCCC-CCccccCCcchhHHHHHHHHHHHHHHHHHhCCC Confidence 10000 00000001 123445666666677788889999999998874 |
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
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Probab=91.70 E-value=0.29 Score=57.74 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=45.9 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh--hhcC--Cccc---ChHhhhccCCEEEE Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG--TALG--AQLV---PLDTLCAESDFIFV 1016 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~--~~~g--~~~~---~l~ell~~sDvV~l 1016 (1128) .++|||||-|..|+.++..++.+|.+|+++|+....+.. .+.- ..+. .+.++++.+|+|+. T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372) T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372) T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe Confidence 378999999999999999999999999999987655431 1110 1122 36778889998874 |
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>PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
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Probab=91.67 E-value=3.2 Score=49.89 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=63.1 Q ss_pred cCCCeEEEEEcC---hhhHHHHHHHhhC-CCEEEEEeCCCCch--h----hhhcCCc--c-cChHhhhccCCEEEEecCC Q psy13054 954 LKGATVGIVGLG---NIGLETAKLLKAF-KVSKILYTSRRVKE--E----GTALGAQ--L-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 954 L~gktvGIIG~G---~IG~~vA~~l~af-G~~Vi~~d~~~~~~--~----~~~~g~~--~-~~l~ell~~sDvV~l~lPl 1020 (1128) +.|++|++||-+ ++.+..+..+..+ ||+|.++.|..-.. . ..+.|.. . .+++|.++.+|||....-. T Consensus 239 l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q 318 (429) T PRK11891 239 VDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRIQ 318 (429) T ss_pred cCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCch Confidence 789999999995 8888888888776 99999887654321 1 1222432 2 4899999999999984421 Q ss_pred Ccc----------cccccCHHHHcc-CCCCcEEEEc Q psy13054 1021 TKD----------TEQLIGRKQFSL-MKPTAILVNT 1045 (1128) Q Consensus 1021 t~~----------T~~li~~~~l~~-mk~ga~lIN~ 1045 (1128) .+. -...++++.++. .|++++|.-+ T Consensus 319 ~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHc 354 (429) T PRK11891 319 KERFADESFEGYTPDFQINQALVDAVCKPDTLIMHP 354 (429) T ss_pred hhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECC Confidence 111 113457777777 7777777643 |
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>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
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Probab=91.66 E-value=0.41 Score=52.74 Aligned_cols=36 Identities=33% Similarity=0.603 Sum_probs=32.1 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) .+++|+++.|.|+|++|+.+|+.+..+|+++++... T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D 62 (227) T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSD 62 (227) T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC Confidence 347899999999999999999999999999985543 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
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Probab=91.54 E-value=0.44 Score=52.19 Aligned_cols=37 Identities=32% Similarity=0.386 Sum_probs=32.7 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) .+++|+|+.|.|+|++|+.+|+.|...|.++++-... T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~ 55 (217) T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDP 55 (217) T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcC Confidence 3589999999999999999999999999988776543 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
---|
Probab=91.54 E-value=1.8 Score=50.50 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=48.9 Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCc--c-cChHhhhccCCEEEEe Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQ--L-VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~--~-~~l~ell~~sDvV~l~ 1017 (1128) +.|++|++||-+ ++.+.++..+..||+++.++.|..-.+. ++..|.+ . .++++.++.+|||..- T Consensus 154 l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336) T PRK03515 154 FNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336) T ss_pred cCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec Confidence 678999999986 6899999999999999998876543221 1123432 2 4899999999999974 |
|
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
---|
Probab=91.44 E-value=0.51 Score=52.81 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=32.5 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) .+++|+|+.|-|+|++|+.+|+.+...|++|++... T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254) T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254) T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC Confidence 458999999999999999999999999999995544 |
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
>cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
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Probab=91.43 E-value=0.36 Score=56.20 Aligned_cols=88 Identities=23% Similarity=0.310 Sum_probs=59.7 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC---CCchh-hhhcCCcccC-----hHh--hhccCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR---RVKEE-GTALGAQLVP-----LDT--LCAESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~---~~~~~-~~~~g~~~~~-----l~e--ll~~sDvV~l~lPlt~~ 1023 (1128) .|++|.|+|.|.||...++.++..|++|++.+++ ..+.+ +++.|+..+. +.+ .....|+|+-++...+ T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355) T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355) T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH- Confidence 5789999999999999999999999999988763 22222 4556654331 111 1234688887765221 Q ss_pred cccccCHHHHccCCCCcEEEEcCC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .+ .+.++.|+++..++.++. T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355) T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355) T ss_pred ---HH-HHHHHHccCCcEEEEEec Confidence 22 356777888888877664 |
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
>PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=91.43 E-value=0.32 Score=55.54 Aligned_cols=68 Identities=13% Similarity=0.195 Sum_probs=47.4 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCC---Cchh--hhhc---C----CcccC------hHhhhccCCEE Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRR---VKEE--GTAL---G----AQLVP------LDTLCAESDFI 1014 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~---~~~~--~~~~---g----~~~~~------l~ell~~sDvV 1014 (1128) +.+|++.|+|.|.+|++++..|...|++ |.+++++. .+.+ ..+. + +...+ +++.+..+|+| T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil 203 (289) T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL 203 (289) T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE Confidence 5789999999999999999999999996 88888664 2222 1111 1 11112 33455678999 Q ss_pred EEecCCC Q psy13054 1015 FVTCALT 1021 (1128) Q Consensus 1015 ~l~lPlt 1021 (1128) +++.|.. T Consensus 204 INaTp~G 210 (289) T PRK12548 204 VNATLVG 210 (289) T ss_pred EEeCCCC Confidence 9888853 |
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>TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
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Probab=91.40 E-value=0.28 Score=58.95 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=48.8 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCC-CeEEEEcCCCcccc------Cc---hhhhHHHHHhhc----CCChhhhhhhhH Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE------GQ---LFSLVYDFCRYS----IGGVTIKRLVKK 764 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg-~~vi~y~~~~~~~~------~~---~~~~~~~la~~~----pg~~~t~~l~~~ 764 (1128) +.|++++|||.|.||+.+++.+...| .+++++++...+.. +. .+.-+.+....+ -.++.+..++++ T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~~ 257 (417) T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVSK 257 (417) T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEcH Confidence 67899999999999999999999999 67778876433321 00 011122333333 556666778888 Q ss_pred HHHHHh Q psy13054 765 TFILSF 770 (1128) Q Consensus 765 ~~l~~~ 770 (1128) +.++.. T Consensus 258 e~l~~~ 263 (417) T TIGR01035 258 EDVERA 263 (417) T ss_pred HHHHHH Confidence 887764 |
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=91.38 E-value=0.38 Score=59.00 Aligned_cols=112 Identities=18% Similarity=0.223 Sum_probs=71.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhc--CCccc--C-hHhhhccCCEEEEe--cCCC- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTAL--GAQLV--P-LDTLCAESDFIFVT--CALT- 1021 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~--g~~~~--~-l~ell~~sDvV~l~--lPlt- 1021 (1128) ++.+++|+|+|+|..|..+|+.|+..|.+|.++|.+...+. .... +++.. + ..+.+..+|+|+.. +|.+ T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~ 83 (498) T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLE 83 (498) T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcc Confidence 46789999999999999999999999999999997653321 2222 33332 1 34556789999886 3432 Q ss_pred ----cc-------cccccCH-HHHcc-C--------CCCcEEEEcCCCcccCHHHHHHHHhcCC Q psy13054 1022 ----KD-------TEQLIGR-KQFSL-M--------KPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1022 ----~~-------T~~li~~-~~l~~-m--------k~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128) |+ ...+++. +.+.. + ++..+-|-=+-|+.-...-|...|+... T Consensus 84 ~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g 147 (498) T PRK02006 84 AALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG 147 (498) T ss_pred cccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC Confidence 11 1123322 22221 2 2245666667888777777777776543 |
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>PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
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Probab=91.36 E-value=0.49 Score=54.87 Aligned_cols=89 Identities=19% Similarity=0.266 Sum_probs=62.7 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHhhhc---cCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDTLCA---ESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell~---~sDvV~l~lPlt~~ 1023 (1128) .|++|.|+|.|.+|...++.+++.|+ +|++.+.+..+.+ +++.|+..+ +++++.. ..|+|+-+... ++ T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~-~~ 247 (343) T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH-PS 247 (343) T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC-HH Confidence 58899999999999999999999999 5777776555544 556676432 2344332 26888877653 22 Q ss_pred cccccCHHHHccCCCCcEEEEcCCC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) + + ...++.++++..+|.++-. T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~~ 268 (343) T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGMG 268 (343) T ss_pred H---H-HHHHHHhhcCCEEEEEccC Confidence 1 2 3567788999999988753 |
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>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
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Probab=91.36 E-value=0.68 Score=53.66 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=31.0 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) ++|||||.|.||..+|..+...|++|.+||+.. T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321) T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321) T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH Confidence 689999999999999999999999999999853 |
|
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=91.35 E-value=0.36 Score=58.58 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=71.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccCh-HhhhccCCEEEEec--CCC-c----c Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPL-DTLCAESDFIFVTC--ALT-K----D 1023 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l-~ell~~sDvV~l~l--Plt-~----~ 1023 (1128) .+.|++|.|||+|.+|..+|+.|+..|.+|.++|....... ....|++.... .+-+..+|+|+..- |.+ | . T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460) T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460) T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH Confidence 36789999999999999999999999999999996533222 23345554322 23356799877522 211 1 1 Q ss_pred ---ccc----ccCH-HHHcc-C-----CCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1024 ---TEQ----LIGR-KQFSL-M-----KPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1024 ---T~~----li~~-~~l~~-m-----k~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ++. ++++ +.+.. + +...+-|.=+.|+.-...-|...|+. T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~ 138 (460) T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE 138 (460) T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh Confidence 111 1332 22222 2 34566777789998888888888875 |
|
>KOG1370|consensus | Back alignment and domain information |
---|
Probab=91.18 E-value=0.28 Score=55.11 Aligned_cols=50 Identities=24% Similarity=0.320 Sum_probs=44.2 Q ss_pred ccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCC Q psy13054 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 359 (1128) Q Consensus 306 ~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~ 359 (1128) -.|++.++++|..++.||++- |...+.+|..+.|.+||.++|+-|++.-. T Consensus 255 MeG~~V~tm~ea~~e~difVT----tTGc~dii~~~H~~~mk~d~IvCN~Ghfd 304 (434) T KOG1370|consen 255 MEGYEVTTLEEAIREVDIFVT----TTGCKDIITGEHFDQMKNDAIVCNIGHFD 304 (434) T ss_pred hhccEeeeHHHhhhcCCEEEE----ccCCcchhhHHHHHhCcCCcEEecccccc Confidence 347888999999999999987 45789999999999999999999998643 |
|
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=91.17 E-value=1.8 Score=50.14 Aligned_cols=93 Identities=17% Similarity=0.119 Sum_probs=69.7 Q ss_pred hhHHHHHHHhhCCCEEEEEeCCCCch-------h-h-----------hhcC-------------Cccc-C--hHhhhccC Q psy13054 967 IGLETAKLLKAFKVSKILYTSRRVKE-------E-G-----------TALG-------------AQLV-P--LDTLCAES 1011 (1128) Q Consensus 967 IG~~vA~~l~afG~~Vi~~d~~~~~~-------~-~-----------~~~g-------------~~~~-~--l~ell~~s 1011 (1128) ||..+|..+...|++|++||...... + . .+.| ++.+ + ..+.+++| T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314) T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314) T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC Confidence 68899999999999999999877420 0 0 0111 1222 2 45788999 Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHh Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128) Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128) |+|+-++|.+.+.+.-+=++..+.++++++| ++.-+.+....|.+.++ T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314) T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314) T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC Confidence 9999999999999887777788889999999 45555567778888774 |
|
>PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
---|
Probab=91.10 E-value=0.37 Score=55.68 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=60.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhhc--------CCcc-cChHhhhccCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTAL--------GAQL-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~~--------g~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128) .+++|+|||.|.+|..+|-.+...|. +++.+|...+... ..+. .... .+-.+.++.||+|++..-.. T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315) T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315) T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC Confidence 56899999999999999999988887 7899997665443 1111 1111 12335689999999976532 Q ss_pred c---ccc--------cccC--HHHHccCCCCcEEEEcCC Q psy13054 1022 K---DTE--------QLIG--RKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1022 ~---~T~--------~li~--~~~l~~mk~ga~lIN~aR 1047 (1128) . +|| .++. .+.+..-.+.+.+|+++- T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315) T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC Confidence 1 122 1111 123333457899999984 |
|
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Probab=91.06 E-value=0.4 Score=57.75 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=78.9 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--h---hhcCCccc---ChHhhhccCCEEEEecCCCcccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--G---TALGAQLV---PLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~---~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) ..+++|.|+|+|.-|+++|+.|+..|++|.++|.+..... . ...++... ...+.+.++|+|+.. |.-+-+. T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448) T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448) T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC Confidence 3499999999999999999999999999999997766521 1 12343332 122678889999974 4444433 Q ss_pred cccC-----------H-HHHccC--CCCcEEEEcCCCcccCHHHHHHHHhc--------CCceEEEEeccCCC Q psy13054 1026 QLIG-----------R-KQFSLM--KPTAILVNTSRGGLLDQEALVEFLKD--------KKIGGAGLDVMIPE 1076 (1128) Q Consensus 1026 ~li~-----------~-~~l~~m--k~ga~lIN~aRG~lVde~aL~~aL~~--------g~i~gaaLDV~e~E 1076 (1128) -++. . +.|.+. +.-.+-|.=+-|+.=.+.-+...|++ |.|...++|+.+++ T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448) T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448) T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc Confidence 3332 2 223332 22255555567776555555555543 46777888988763 |
|
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=91.06 E-value=0.47 Score=56.89 Aligned_cols=106 Identities=15% Similarity=0.149 Sum_probs=63.6 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhh-cCCcc-cChHhhhccCCEEEEecCCCccccc------- Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTA-LGAQL-VPLDTLCAESDFIFVTCALTKDTEQ------- 1026 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~-~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~------- 1026 (1128) .++|.|||+|.+|..+|+.|+..|.+|.++|++........ ..-.. ...+.+..++|+|+.+.+.. .... T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~-~~~~~l~~A~~ 81 (418) T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK-KEHPWVQAAIA 81 (418) T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC-CCcHHHHHHHH Confidence 46899999999999999999999999999997654321100 00011 12334457789888766543 3222 Q ss_pred ----ccCHHHH--cc--C-CCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1027 ----LIGRKQF--SL--M-KPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1027 ----li~~~~l--~~--m-k~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) +++...+ .. + +...+=|-=+.|+.-...=|...|+. T Consensus 82 ~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~ 126 (418) T PRK00683 82 SHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR 126 (418) T ss_pred CCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH Confidence 2222122 11 1 22245555567776666666666754 |
|
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=90.99 E-value=0.47 Score=57.20 Aligned_cols=110 Identities=26% Similarity=0.350 Sum_probs=71.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh------hhhcCCccc---ChHhhhccCCEEEEecCCCcc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE------GTALGAQLV---PLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~------~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~ 1023 (1128) .+.+|++.|+|.|.+|.++|+.|...|++|.++|+...... ....+.+.. ..++.....|+|++..-..+. T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450) T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450) T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC Confidence 36789999999999999999999999999999987642211 112244332 244667789999986543333 Q ss_pred cccc----------cCH-HHHc-cCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1024 TEQL----------IGR-KQFS-LMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1024 T~~l----------i~~-~~l~-~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ..-+ +.. +.+. ..+...+-|-=+.|+.-...-|...|+. T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450) T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450) T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH Confidence 2211 111 1122 2233455555588888877877777865 |
|
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=90.96 E-value=0.26 Score=56.65 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=42.8 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccccCchhhhHHHHHhhc-------CCChhhhhhhhH Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGQLFSLVYDFCRYS-------IGGVTIKRLVKK 764 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~~~~~~~~~~~la~~~-------pg~~~t~~l~~~ 764 (1128) .+++|||||+|++|+++|+++...|.+|.+|+++... .+.+.++.+ |. ...+.+++. T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~-------~~~~~~~~advvi~~vp~-~~~~~v~~~ 66 (308) T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGL-------SLAAVLADADVIVSAVSM-KGVRPVAEQ 66 (308) T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCC-------CHHHHHhcCCEEEEECCh-HHHHHHHHH Confidence 4578999999999999999999999999999875431 134444444 65 467776644 |
|
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
---|
Probab=90.95 E-value=0.38 Score=57.08 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=65.6 Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhhC-CCEEEEEeCCCCchh-hhhcC-------Cc-ccChHh-hhccCCEEEEecCCC Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKAF-KVSKILYTSRRVKEE-GTALG-------AQ-LVPLDT-LCAESDFIFVTCALT 1021 (1128) Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~-~~~~g-------~~-~~~l~e-ll~~sDvV~l~lPlt 1021 (1128) ...++|+|+|. |.+|+++.++|..- ++++..+.++..... ..... .. ..++++ .++++|+|++++|.. T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381) T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381) T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH Confidence 35568999999 99999999999877 778777765432211 11111 11 122332 258899999999953 Q ss_pred cccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHH Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVE 1058 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~ 1058 (1128) ...+....|+.|..+|+.|-.--.+.++.++ T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~ 146 (381) T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE 146 (381) T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCcccch Confidence 3445555566789999998777666665443 |
|
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
---|
Probab=90.92 E-value=3.7 Score=46.59 Aligned_cols=160 Identities=15% Similarity=0.138 Sum_probs=103.9 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhC----CC-------EEEEEeCCC-------Cchh----hhhcCC--cccChHhhh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAF----KV-------SKILYTSRR-------VKEE----GTALGA--QLVPLDTLC 1008 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~af----G~-------~Vi~~d~~~-------~~~~----~~~~g~--~~~~l~ell 1008 (1128) .|...++.|+|.|.-|-.+|+.+... |+ +++.+|+.. +-.. .....- ...+|.|++ T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i 101 (279) T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVV 101 (279) T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHH Confidence 46788999999999999999999877 77 777777652 1111 111111 234899999 Q ss_pred c--cCCEEEEecCCCcccccccCHHHHccCC---CCcEEEEcCCCcc---cCHHHHHHHHhcCCceEEEEeccCCCCCCC Q psy13054 1009 A--ESDFIFVTCALTKDTEQLIGRKQFSLMK---PTAILVNTSRGGL---LDQEALVEFLKDKKIGGAGLDVMIPEPLPA 1080 (1128) Q Consensus 1009 ~--~sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aRG~l---Vde~aL~~aL~~g~i~gaaLDV~e~EPl~~ 1080 (1128) + ..|+++=+ ...-|+|+++.++.|. +..++.=.|+... +..++.+++=+...|.+.| -|+++ T Consensus 102 ~~v~ptvlIG~----S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATG------sPf~p 171 (279) T cd05312 102 KAVKPTVLIGL----SGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASG------SPFPP 171 (279) T ss_pred HhcCCCEEEEe----CCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeC------CCCCC Confidence 9 88999842 2223799999999998 8999999998876 2344444432233355543 23221 Q ss_pred ------CCccccCCCeEECCCCCCC-----cHHHHHHHHHHHHHHHHHHHcCC Q psy13054 1081 ------DHPLVQLDNCVLTPHTSSA-----TKAVRDEKSSTSAENIIRGYKGE 1122 (1128) Q Consensus 1081 ------~~pL~~~pNvilTPHiag~-----t~e~~~~~~~~~~~nl~~~l~G~ 1122 (1128) ...-=+.-|+++=|=++-. .....++|...+++.|..+..-+ T Consensus 172 v~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~ 224 (279) T cd05312 172 VEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDE 224 (279) T ss_pred eeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCcc Confidence 1122246688988876532 22334667777777777765433 |
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
>PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
---|
Probab=90.90 E-value=0.31 Score=59.52 Aligned_cols=75 Identities=13% Similarity=0.111 Sum_probs=64.8 Q ss_pred cCHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCC Q psy13054 312 VPLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 387 (1128) Q Consensus 312 vsLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EP 387 (1128) .+++|+.+. +|+|++.+|-.+.++.++ ...+..+++|.++|+.+-..--|...+.+.+++..+...+.=|.-.|+ T Consensus 61 ~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493) T PLN02350 61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493) T ss_pred CCHHHHHhcCCCCCEEEEECCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH Confidence 488998876 999999999999998888 567889999999999999998999999999999888766666666655 |
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>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
---|
Probab=90.85 E-value=0.27 Score=57.42 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=33.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128) .|..++|.|||+|.+|..+|+.|...|. ++.++|... T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339) T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339) T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc Confidence 6899999999999999999999999998 888888753 |
|
>PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=90.82 E-value=0.12 Score=58.31 Aligned_cols=102 Identities=17% Similarity=0.102 Sum_probs=61.7 Q ss_pred eeCCCCCCCCccccccC--Cccccceeeccccccc-ccccccCC--cccCHHHHhhcCCEEEEecCCCcccccccCHHHH Q psy13054 269 FLGPKKNGSQNPKWRMG--SKTDTNHYFGYNWFER-SNGTALGA--QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 343 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g--~~~~~~~~~g~~~~~~-~~~~~~g~--~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l 343 (1128) ++|+|+||+.+++.... .......+...+.... .....++. .+.++++|++++|+|++++|. +++.-+. . T Consensus 11 IIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~--~~h~e~~---~ 85 (271) T PRK13302 11 IAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPA--SVLRAIV---E 85 (271) T ss_pred EECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCc--HHHHHHH---H Confidence 67888888776653211 1111111212221111 11233443 345899999999999999994 3333333 3 Q ss_pred hcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 344 SLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 344 ~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) +.++.|.-++..++|.+.+.++|.++.+++.. T Consensus 86 ~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~ 117 (271) T PRK13302 86 PVLAAGKKAIVLSVGALLRNEDLIDLARQNGG 117 (271) T ss_pred HHHHcCCcEEEecchhHHhHHHHHHHHHHcCC Confidence 44566767778899999999999999888554 |
|
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=90.77 E-value=1.2 Score=53.61 Aligned_cols=110 Identities=20% Similarity=0.224 Sum_probs=71.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-----hhhcCCccc---ChHhhhcc-CCEEEEec--CCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-----GTALGAQLV---PLDTLCAE-SDFIFVTC--ALT 1021 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-----~~~~g~~~~---~l~ell~~-sDvV~l~l--Plt 1021 (1128) ++.||++.|+|.|.+|.++|+.|...|++|++.|....... ..+.|+... ...+++.. .|+|+..- |.+ T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447) T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447) T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC Confidence 36789999999999999999999999999999986543211 223355432 23344554 89887654 211 Q ss_pred -cc-------cccccCHHHH-ccC-CCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1022 -KD-------TEQLIGRKQF-SLM-KPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1022 -~~-------T~~li~~~~l-~~m-k~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) |. ...++.+..| ..+ +...+-|-=+.|+.-...-+...|+. T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447) T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447) T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH Confidence 11 1123444333 233 34466666688988877777777865 |
|
>PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
---|
Probab=90.74 E-value=0.87 Score=55.55 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=70.7 Q ss_pred ccCCCeEEEEEc----------ChhhHHHHHHHhhCCCEEEEEeCCCCchhhh-hc----------------------CC Q psy13054 953 GLKGATVGIVGL----------GNIGLETAKLLKAFKVSKILYTSRRVKEEGT-AL----------------------GA 999 (1128) Q Consensus 953 ~L~gktvGIIG~----------G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~-~~----------------------g~ 999 (1128) .+.|++|+|+|+ ..-...+++.|...|.+|.+|||........ .. .+ T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473) T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473) T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce Confidence 478999999998 4467899999999999999999986543221 11 11 Q ss_pred ccc-ChHhhhccCCEEEEecCCCcccccccCHHH-HccCCCCcEEEEcCCCcccCHHHHH Q psy13054 1000 QLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQ-FSLMKPTAILVNTSRGGLLDQEALV 1057 (1128) Q Consensus 1000 ~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~-l~~mk~ga~lIN~aRG~lVde~aL~ 1057 (1128) ++. ++++.++.||+|+++.+..+ .+. ++-+. .+.|++..++|+. |+- .|.+.+- T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~-l~~~~~~~~m~~~~~viD~-rn~-l~~~~~~ 456 (473) T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKT-LDYQKIYDNMQKPAFVFDG-RNV-LDHEKLR 456 (473) T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcc-cCHHHHHHhccCCCEEEEC-CCC-CCHHHHH Confidence 222 56789999999999988543 333 35444 4568766688884 554 4665553 |
|
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
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Probab=90.58 E-value=0.39 Score=52.32 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=65.0 Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcCCcc----cChHhhhccCCEEEEecCCCcc Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALGAQL----VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g~~~----~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) +..+.||+|.|||-|.+|..=++.+...|++|+++.+...... ..+..... .+.+++. .+++|+.+++..+ T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~-~~~lviaAt~d~~- 84 (210) T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLD-DAFLVIAATDDEE- 84 (210) T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhc-CceEEEEeCCCHH- Confidence 3479999999999999999999999999999999988772221 12222222 2333443 4899998887443 Q ss_pred cccccCHHHHccCCCCcEEEEc Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) +|+..++.+++-.++||+ T Consensus 85 ----ln~~i~~~a~~~~i~vNv 102 (210) T COG1648 85 ----LNERIAKAARERRILVNV 102 (210) T ss_pred ----HHHHHHHHHHHhCCceec Confidence 466777777777788888 |
|
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
---|
Probab=90.57 E-value=0.41 Score=55.14 Aligned_cols=89 Identities=26% Similarity=0.315 Sum_probs=58.0 Q ss_pred eEEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchh--hhhc--CCc-------ccChHhhhccCCEEEEecCCCcc- Q psy13054 958 TVGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEE--GTAL--GAQ-------LVPLDTLCAESDFIFVTCALTKD- 1023 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~--~~~~--g~~-------~~~l~ell~~sDvV~l~lPlt~~- 1023 (1128) +|+|||.|.+|..+|..|...| -+++++|....+.. +.+. ... ..+-.+.++.||+|+++.+.... T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~~~ 81 (308) T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQKP 81 (308) T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCCCC Confidence 6999999999999999998888 58999997765433 1111 100 01223568999999999985322 Q ss_pred --cc--------cccC--HHHHccCCCCcEEEEcC Q psy13054 1024 --TE--------QLIG--RKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1024 --T~--------~li~--~~~l~~mk~ga~lIN~a 1046 (1128) ++ .++. .+.+....+.+++++++ T Consensus 82 ~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308) T cd05292 82 GETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec Confidence 11 1111 12344456788888885 |
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
---|
Probab=90.53 E-value=0.28 Score=55.91 Aligned_cols=34 Identities=32% Similarity=0.428 Sum_probs=31.2 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128) ++|||||+|.+|..+|+.+...|.+|++||+... T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~ 38 (295) T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPA 38 (295) T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHH Confidence 6899999999999999999999999999998543 |
|
>PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
---|
Probab=90.52 E-value=0.32 Score=60.60 Aligned_cols=86 Identities=13% Similarity=0.211 Sum_probs=60.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHh-hhccCCEEEEecCCCccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDT-LCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~e-ll~~sDvV~l~lPlt~~T~~ 1026 (1128) ..+-|+|+|++|+.+|+.|+..|.+|++.|.+.++.+ .++.|.... + +++ -++++|.++++.+..+++.. T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558) T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558) T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH Confidence 4688999999999999999999999999998776654 444554331 2 222 25689999999998777665 Q ss_pred ccCHHHHccCCCCcEEEE Q psy13054 1027 LIGRKQFSLMKPTAILVN 1044 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN 1044 (1128) ++-. ..++.+...+|- T Consensus 498 iv~~--~~~~~~~~~iia 513 (558) T PRK10669 498 IVAS--AREKRPDIEIIA 513 (558) T ss_pred HHHH--HHHHCCCCeEEE Confidence 5532 233345555553 |
|
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
---|
Probab=90.51 E-value=0.54 Score=57.06 Aligned_cols=111 Identities=17% Similarity=0.228 Sum_probs=73.1 Q ss_pred cCCCeEEEEEcChhhHH-HHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc--ChHhhhccCCEEEEecCC---Cccc- Q psy13054 954 LKGATVGIVGLGNIGLE-TAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV--PLDTLCAESDFIFVTCAL---TKDT- 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~-vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~--~l~ell~~sDvV~l~lPl---t~~T- 1024 (1128) .+++++.|+|+|..|.. +|+.|+..|.+|.++|.+..... ..+.|+... .-.+.+..+|+|++.--- +|.. T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461) T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461) T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH Confidence 46789999999999999 79999999999999997654321 233455442 223456689988764322 1221 Q ss_pred ------ccccCHHHH-ccC-C-CCcEEEEcCCCcccCHHHHHHHHhcCC Q psy13054 1025 ------EQLIGRKQF-SLM-K-PTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1025 ------~~li~~~~l-~~m-k-~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128) ..+++.-.| ..+ + ...+-|-=+.|+.-...-+...|+... T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461) T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461) T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC Confidence 124554433 333 3 346667778899887777777786543 |
|
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
---|
Probab=90.48 E-value=0.78 Score=52.98 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=70.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhh----c---C---Ccc-cChHhhhccCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTA----L---G---AQL-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~----~---g---~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128) .+|+|||.|.||..+|-.+...|. +++.||.+.+... +.+ . . +.. .+.+ .++.||+|+++.-.. T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~ 82 (312) T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR 82 (312) T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC Confidence 589999999999999998865554 7889997765443 111 0 1 111 2344 489999999965432 Q ss_pred c---ccc-ccc--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEEE Q psy13054 1022 K---DTE-QLI--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAGL 1070 (1128) Q Consensus 1022 ~---~T~-~li--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaaL 1070 (1128) . +|| .++ |. +.+....|.+++|+++-..=+-...+.+. +...++.|.+. T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt 146 (312) T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGC 146 (312) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCc Confidence 1 233 111 11 33455678999999984443334444444 55557666643 |
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
---|
Probab=90.47 E-value=0.29 Score=58.97 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=50.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-cCCcc--------cChHhh-hccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-LGAQL--------VPLDTL-CAESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-~g~~~--------~~l~el-l~~sDvV~l~lPlt~~ 1023 (1128) +++.|+|+|.+|+.+++.|...|.+|++++....... ..+ .++.. ..++++ +.++|.|+++++.... T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453) T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453) T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH Confidence 3689999999999999999999999999987655443 222 33221 235555 7889999999986544 |
|
>KOG0409|consensus | Back alignment and domain information |
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Probab=90.43 E-value=0.27 Score=55.51 Aligned_cols=93 Identities=13% Similarity=0.150 Sum_probs=65.8 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc------cCchhhhHHHHHhhc-------CCChhhhhhhhH-- Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE------EGQLFSLVYDFCRYS-------IGGVTIKRLVKK-- 764 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~------~~~~~~~~~~la~~~-------pg~~~t~~l~~~-- 764 (1128) .-+++|.||+|+.|..++.-|-.-|.+|++||....+- -...+..+.|+++.| |--...++++.. T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~ 113 (327) T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS 113 (327) T ss_pred ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC Confidence 46899999999999999999999999999999766554 223334488889888 777777777633 Q ss_pred HHHHHhcceEEeeeeecccCCCcchhcccc Q psy13054 765 TFILSFGGLVVTVLHVHIGDLPAESFEDQV 794 (1128) Q Consensus 765 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1128) -+|+.++--=+.. +-|.+++|..-.++. T Consensus 114 Gvl~g~~~g~~~~--vDmSTidp~~s~ei~ 141 (327) T KOG0409|consen 114 GVLSGIRPGKKAT--VDMSTIDPDTSLEIA 141 (327) T ss_pred cceeeccCCCceE--EeccccCHHHHHHHH Confidence 3444433211111 567777777766543 |
|
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=90.41 E-value=0.44 Score=58.11 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=72.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc---ChHhhhccCCEEEEec--C-CCccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV---PLDTLCAESDFIFVTC--A-LTKDT 1024 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~---~l~ell~~sDvV~l~l--P-lt~~T 1024 (1128) .+.+++|.|+|+|.+|+++|+.|...|++|.++|+...... ....|+... ...+.+..+|+|+..- | ..|+. T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473) T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473) T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH Confidence 67899999999999999999999999999999996543322 233466543 2234567889887642 2 22221 Q ss_pred -------ccccCHHHHcc-------C--CCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1025 -------EQLIGRKQFSL-------M--KPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1025 -------~~li~~~~l~~-------m--k~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ..++++-.+.. + +...+-|-=+-|+.-...-|...|+.. T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~ 146 (473) T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG 146 (473) T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc Confidence 12233333321 1 123555666888888777777778753 |
|
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=90.41 E-value=0.46 Score=53.99 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=53.8 Q ss_pred CCCCCCEEEEEecChh-hHHHHHHHhhCCCeEEEEcCCCccccCchhhhHHHHHhhc---CCChhhhhhhhHHHHHHhcc Q psy13054 697 MGLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSRRVKEEGQLFSLVYDFCRYS---IGGVTIKRLVKKTFILSFGG 772 (1128) Q Consensus 697 ~~l~gktvGIiG~G~I-G~~va~r~~afg~~vi~y~~~~~~~~~~~~~~~~~la~~~---pg~~~t~~l~~~~~l~~~~~ 772 (1128) .+++||++.|||-|+| |+-+|..|...|++|..+|++.+. +.+..+++ -....+.++++++.++.- + T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~--------l~~~~~~ADIVV~avG~~~~i~~~~ik~g-a 224 (285) T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRD--------LAAHTRQADIVVAAVGKRNVLTADMVKPG-A 224 (285) T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCC--------HHHHhhhCCEEEEcCCCcCccCHHHcCCC-C Confidence 4689999999999999 999999999999999999975321 34455555 222226678999888765 4 Q ss_pred eEEe Q psy13054 773 LVVT 776 (1128) Q Consensus 773 ~~~~ 776 (1128) .||. T Consensus 225 vVID 228 (285) T PRK14189 225 TVID 228 (285) T ss_pred EEEE Confidence 5666 |
|
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
---|
Probab=90.25 E-value=0.42 Score=60.09 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=65.0 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHh-hhccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDT-LCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~e-ll~~sDvV~l~lPlt~~T~ 1025 (1128) ...+-|+|+|++|+.+++.|+..|.++++.|.++++.+ .++.|.... + |++ =+.++|.++++.+..+++. T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601) T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601) T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH Confidence 35699999999999999999999999999998776554 444554321 2 222 2678999999999877766 Q ss_pred cccCHHHHccCCCCcEEEEcCCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) .++. ...++.|...+|-.+|. T Consensus 480 ~i~~--~~r~~~p~~~IiaRa~~ 500 (601) T PRK03659 480 KIVE--LCQQHFPHLHILARARG 500 (601) T ss_pred HHHH--HHHHHCCCCeEEEEeCC Confidence 5542 34556666666654443 |
|
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
---|
Probab=90.22 E-value=0.51 Score=43.72 Aligned_cols=35 Identities=37% Similarity=0.490 Sum_probs=30.8 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhC-CCeEEEEcC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAF-KVSKILYTS 732 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~af-g~~vi~y~~ 732 (1128) .+++|+++|+|.|.+|+.+++.+... +.++..|++ T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86) T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC Confidence 47889999999999999999999998 567777766 |
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
---|
Probab=90.02 E-value=0.47 Score=54.73 Aligned_cols=65 Identities=22% Similarity=0.373 Sum_probs=47.3 Q ss_pred CeEEEEEcChhhH-HHHHHHhhCC--CEEE-EEeCCCCchh--hhhcCCc--ccChHhhhccC--CEEEEecCCC Q psy13054 957 ATVGIVGLGNIGL-ETAKLLKAFK--VSKI-LYTSRRVKEE--GTALGAQ--LVPLDTLCAES--DFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~-~vA~~l~afG--~~Vi-~~d~~~~~~~--~~~~g~~--~~~l~ell~~s--DvV~l~lPlt 1021 (1128) .++||||+|.|++ ..+..++..+ +.++ ++|+...+.. +.+.++. +.+++++++.- |+|+++.|.. T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342) T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342) T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh Confidence 5799999997775 5888888876 3444 4465555543 5566764 56899999874 8999999944 |
|
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
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Probab=89.93 E-value=0.51 Score=53.93 Aligned_cols=85 Identities=19% Similarity=0.313 Sum_probs=54.7 Q ss_pred eEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCc-------------h--------h-h----hhc--CCcc------- Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVK-------------E--------E-G----TAL--GAQL------- 1001 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~-------------~--------~-~----~~~--g~~~------- 1001 (1128) +|.|||.|.+|..+|+.|...|. ++.++|...-. . + + .+. +++. T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307) T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307) T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec Confidence 58999999999999999999988 44455432110 0 0 0 000 1100 Q ss_pred -------------------cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcC Q psy13054 1002 -------------------VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1002 -------------------~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) ..++++++++|+|+.++ .+-++|.+++.--... +..+||.+ T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aa 140 (307) T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAA 140 (307) T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEE Confidence 02568999999999988 5888888887544332 33666643 |
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
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Probab=89.91 E-value=0.43 Score=57.45 Aligned_cols=104 Identities=16% Similarity=0.135 Sum_probs=66.8 Q ss_pred eEEEEEcChhhHHHHH---HH---hhCCCEEEEEeCCCCchhh---------hhcC----Cc-ccChHhhhccCCEEEEe Q psy13054 958 TVGIVGLGNIGLETAK---LL---KAFKVSKILYTSRRVKEEG---------TALG----AQ-LVPLDTLCAESDFIFVT 1017 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~---~l---~afG~~Vi~~d~~~~~~~~---------~~~g----~~-~~~l~ell~~sDvV~l~ 1017 (1128) +|+|||.|.+|...+- .+ ..-|.+|+.||......+. ...+ +. ..++.+.++.||+|+.+ T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a 81 (423) T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT 81 (423) T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe Confidence 6999999999998554 33 3346799999977654331 0111 11 13678999999999999 Q ss_pred cCCCc-----------ccccccC---------------------HHHHccCC---CCcEEEEcCCCcccCHHHHHHHHh Q psy13054 1018 CALTK-----------DTEQLIG---------------------RKQFSLMK---PTAILVNTSRGGLLDQEALVEFLK 1061 (1128) Q Consensus 1018 lPlt~-----------~T~~li~---------------------~~~l~~mk---~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128) +|... .-++++. .+..+.|+ |.++++|.+-..-+-+.++.+... T Consensus 82 i~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423) T cd05297 82 IQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423) T ss_pred eEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC Confidence 99310 1111111 12333333 689999998887777777776654 |
linked to 3D####ucture |
>PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
---|
Probab=89.87 E-value=0.62 Score=53.18 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=47.4 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCC---chh--hhhcC------CcccCh------HhhhccCCEEE Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRV---KEE--GTALG------AQLVPL------DTLCAESDFIF 1015 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~---~~~--~~~~g------~~~~~l------~ell~~sDvV~ 1015 (1128) +.||++.|+|.|..+++++-.|...|+ ++.++++... +.+ +...+ +...++ .+.+.++|+|+ T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivI 201 (288) T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILT 201 (288) T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEE Confidence 678999999999999999999988887 7888887643 222 11111 122233 23456789999 Q ss_pred EecCCC Q psy13054 1016 VTCALT 1021 (1128) Q Consensus 1016 l~lPlt 1021 (1128) ++.|.. T Consensus 202 NaTp~G 207 (288) T PRK12749 202 NGTKVG 207 (288) T ss_pred ECCCCC Confidence 998863 |
|
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
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Probab=89.87 E-value=0.64 Score=53.34 Aligned_cols=109 Identities=18% Similarity=0.202 Sum_probs=66.4 Q ss_pred EEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchhhh--h---c----C-Ccc--cChHhhhccCCEEEEecCCCccc Q psy13054 959 VGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEEGT--A---L----G-AQL--VPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 959 vGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~~~--~---~----g-~~~--~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) |+|||.|.+|..+|-.+...| .+++++|...++.... + . . .+. .+-.+.++.||+|+++... |.. T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~-p~~ 79 (300) T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA-PRK 79 (300) T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCC-CCC Confidence 589999999999999998777 5799999877654311 1 1 0 011 1114688999999998874 222 Q ss_pred ccc------------cC--HHHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEE Q psy13054 1025 EQL------------IG--RKQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGA 1068 (1128) Q Consensus 1025 ~~l------------i~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~ga 1068 (1128) .++ +. .+.+....|.+++||.+-..=+-...+.+. +...++.|. T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~ 139 (300) T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGS 139 (300) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEec Confidence 221 10 123455568999999984332233333333 333455554 |
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
---|
Probab=89.85 E-value=0.61 Score=54.60 Aligned_cols=91 Identities=26% Similarity=0.299 Sum_probs=56.9 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhC-CCEEEEEeCCCCchh-h-hhc-------CCcccChHh-hhccCCEEEEecCCCccc Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAF-KVSKILYTSRRVKEE-G-TAL-------GAQLVPLDT-LCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~-~-~~~-------g~~~~~l~e-ll~~sDvV~l~lPlt~~T 1024 (1128) .+|+|||. |.+|+.+++.+... +++++.+.++..... . ... ...+.++++ .+.++|+|++|+|.. .. T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~-~~ 81 (343) T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG-VS 81 (343) T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH-HH Confidence 58999997 99999999999877 677766544332221 1 111 111223433 457899999999953 22 Q ss_pred ccccCHHHHc-cCCCCcEEEEcCCCcccCH Q psy13054 1025 EQLIGRKQFS-LMKPTAILVNTSRGGLLDQ 1053 (1128) Q Consensus 1025 ~~li~~~~l~-~mk~ga~lIN~aRG~lVde 1053 (1128) .+... ..+.|..+|+.|-.-=.+. T Consensus 82 -----~~~v~~a~~aG~~VID~S~~fR~~~ 106 (343) T PRK00436 82 -----MDLAPQLLEAGVKVIDLSADFRLKD 106 (343) T ss_pred -----HHHHHHHHhCCCEEEECCcccCCCC Confidence 22222 2357899999985444433 |
|
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
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Probab=89.82 E-value=0.43 Score=51.92 Aligned_cols=32 Identities=34% Similarity=0.579 Sum_probs=27.1 Q ss_pred EEEEEecChhhHHHHHHHh----hCCCeEEEEcCCCc Q psy13054 703 TVGIVGLGNIGLETAKLLK----AFKVSKILYTSRRV 735 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~----afg~~vi~y~~~~~ 735 (1128) +|||||||+||+.+.+..+ .|.. +++||.... T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~-v~v~D~~~e 37 (255) T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFEL-VAVYDRDEE 37 (255) T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeE-EEEecCCHH Confidence 6999999999999999998 4776 788887543 |
|
>PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
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Probab=89.73 E-value=0.36 Score=54.69 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=29.1 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +|||||+|.||+.+|+.++..|.+|.+||++ T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279) T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279) T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC Confidence 6999999999999999999999999999974 |
|
>PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=89.72 E-value=0.64 Score=56.04 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=33.0 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) .+++|+||.|.|+|++|+.+|+.+..+|++|++... T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445) T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445) T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc Confidence 358999999999999999999999999999999833 |
|
>PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
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Probab=89.72 E-value=0.66 Score=54.15 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=43.4 Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEEEEeCCCCchhhhhc-CCc-ccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKILYTSRRVKEEGTAL-GAQ-LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi~~d~~~~~~~~~~~-g~~-~~~l~ell~--~sDvV~l~lPlt 1021 (1128) -++||||+|.||+. .+..++.. +++++++.++......... +.. +.+++++++ .-|+|+++.|.. T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~ 75 (346) T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPND 75 (346) T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcH Confidence 37999999999985 45655543 7888765443322222222 232 458999996 479999999943 |
|
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
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Probab=89.72 E-value=5.5 Score=46.50 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=63.3 Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCch--h--------hhhcCCcc---cChHhhhccCCEEEEec Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKE--E--------GTALGAQL---VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~--~--------~~~~g~~~---~~l~ell~~sDvV~l~l 1018 (1128) +.|++|++||-+ ++.+..+..+..||++|.+..|..-.+ . ++..|... .++++.++.+|||..-. T Consensus 154 l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~ 233 (334) T PRK12562 154 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDV 233 (334) T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC Confidence 679999999986 789999999999999999887764221 1 11234332 48999999999999743 Q ss_pred ----CCCc----c-----cccccCHHHHccC-CCCcEEEEcC Q psy13054 1019 ----ALTK----D-----TEQLIGRKQFSLM-KPTAILVNTS 1046 (1128) Q Consensus 1019 ----Plt~----~-----T~~li~~~~l~~m-k~ga~lIN~a 1046 (1128) .... + -..-++.+.++.. |++++|.-+. T Consensus 234 w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334) T PRK12562 234 WVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334) T ss_pred ccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC Confidence 1000 0 1223577777764 6777776653 |
|
>PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
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Probab=89.71 E-value=1 Score=52.70 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=63.8 Q ss_pred eEEEEEcChhhHHHHHHHhhC----------CCEEEEEeCCCC--------ch-h----hhhcCC--------cccChHh Q psy13054 958 TVGIVGLGNIGLETAKLLKAF----------KVSKILYTSRRV--------KE-E----GTALGA--------QLVPLDT 1006 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~af----------G~~Vi~~d~~~~--------~~-~----~~~~g~--------~~~~l~e 1006 (1128) +|||+|+|.||+.+++.++.. +++|+..-++.. .. . ....+. ...++++ T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341) T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341) T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH Confidence 699999999999999998644 677665433210 11 1 111111 1137888 Q ss_pred hhc--cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcc-cCHHHHHHHHhcCCc Q psy13054 1007 LCA--ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL-LDQEALVEFLKDKKI 1065 (1128) Q Consensus 1007 ll~--~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~l-Vde~aL~~aL~~g~i 1065 (1128) ++. ..|+|+.++|....+...--.-..+.++.|.-+|-..-+.+ ...+.|.++.++... T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~ 145 (341) T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV 145 (341) T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC Confidence 874 68999999996554322211223455666666665433332 245677777666544 |
|
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
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Probab=89.70 E-value=2.3 Score=47.63 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=103.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-----------EEEEEeCCC-------C-chhhhh------cCCcccChHhh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-----------SKILYTSRR-------V-KEEGTA------LGAQLVPLDTL 1007 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-----------~Vi~~d~~~-------~-~~~~~~------~g~~~~~l~el 1007 (1128) .+...++.|+|.|..|-.+|+.+...++ +++.+|+.. . .+.... ..-...+|.|+ T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~ea 101 (254) T cd00762 22 KISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDA 101 (254) T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHH Confidence 4678899999999999999999988776 467776552 1 111111 11123489999 Q ss_pred hc--cCCEEEEecCCCcccccccCHHHHccCC---CCcEEEEcCCCcc---cCHHHHHHHHhcCCceEEEEeccCCCCCC Q psy13054 1008 CA--ESDFIFVTCALTKDTEQLIGRKQFSLMK---PTAILVNTSRGGL---LDQEALVEFLKDKKIGGAGLDVMIPEPLP 1079 (1128) Q Consensus 1008 l~--~sDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aRG~l---Vde~aL~~aL~~g~i~gaaLDV~e~EPl~ 1079 (1128) ++ ..|+++= ....-++|.++.++.|. +..++.=.|+... +..++.+++=+...|.+.|.-.+..+--. T Consensus 102 v~~~kptvlIG----~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g 177 (254) T cd00762 102 VEAAKPDFLIG----VSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNG 177 (254) T ss_pred HHhhCCCEEEE----eCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCC Confidence 99 9999984 22334899999999999 9999999988876 34455555433334544432111111100 Q ss_pred CCCccccCCCeEECCCCCCCc-----HHHHHHHHHHHHHHHHHHHc Q psy13054 1080 ADHPLVQLDNCVLTPHTSSAT-----KAVRDEKSSTSAENIIRGYK 1120 (1128) Q Consensus 1080 ~~~pL~~~pNvilTPHiag~t-----~e~~~~~~~~~~~nl~~~l~ 1120 (1128) .....-+.-|+++=|=++-.. ....++|...+++.|..+.. T Consensus 178 ~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~ 223 (254) T cd00762 178 GTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVT 223 (254) T ss_pred ceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCC Confidence 111222567899999765322 22335666667777766654 |
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
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Probab=89.66 E-value=0.42 Score=54.71 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=66.0 Q ss_pred EEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhh-----hhc----C----Ccc-cChHhhhccCCEEEEecCCCcc Q psy13054 959 VGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG-----TAL----G----AQL-VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 959 vGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~-----~~~----g----~~~-~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) |+|||.|.+|..+|..+...|. +|+++|........ .+. + ++. .+. +.++.||+|+++..- |. T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~-p~ 78 (300) T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGI-PR 78 (300) T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCC-CC Confidence 6899999999999999875554 99999987653221 110 1 111 234 458999999998742 22 Q ss_pred ccc------------ccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHH--hcCCceEEE Q psy13054 1024 TEQ------------LIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFL--KDKKIGGAG 1069 (1128) Q Consensus 1024 T~~------------li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL--~~g~i~gaa 1069 (1128) ..+ ++. .+.+....|.+++|+.+-..-+-...+.+.. ...++.|.+ T Consensus 79 ~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300) T cd01339 79 KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300) T ss_pred CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec Confidence 111 111 1234455678888888855544444454442 223566665 |
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
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Probab=89.60 E-value=0.51 Score=45.62 Aligned_cols=83 Identities=18% Similarity=0.244 Sum_probs=56.0 Q ss_pred EEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHh-hhccCCEEEEecCCCccccccc Q psy13054 959 VGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDT-LCAESDFIFVTCALTKDTEQLI 1028 (1128) Q Consensus 959 vGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~e-ll~~sDvV~l~lPlt~~T~~li 1028 (1128) +-|+|+|.+|+.+++.|+..+.+|++.+....... ..+.++... + |.+ =+.++|.|+++.+....+..+ T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~- 79 (116) T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI- 79 (116) T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH- T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH- Confidence 56999999999999999997769999997766544 444554332 2 222 357899999998865544332 Q ss_pred CHHHHccCCCCcEEE Q psy13054 1029 GRKQFSLMKPTAILV 1043 (1128) Q Consensus 1029 ~~~~l~~mk~ga~lI 1043 (1128) ...++.+.+...+| T Consensus 80 -~~~~r~~~~~~~ii 93 (116) T PF02254_consen 80 -ALLARELNPDIRII 93 (116) T ss_dssp -HHHHHHHTTTSEEE T ss_pred -HHHHHHHCCCCeEE Confidence 34555555655555 |
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
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Probab=89.58 E-value=0.32 Score=53.23 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=30.3 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) +++|.||+|+.|..+.+|+.--|-+|++||..+ T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~ 33 (300) T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQ 33 (300) T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCH Confidence 369999999999999999999999999999754 |
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>PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=89.41 E-value=0.53 Score=53.62 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=48.5 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhc----CC---cccC---hHhhhccCCEEEEecCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTAL----GA---QLVP---LDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~----g~---~~~~---l~ell~~sDvV~l~lPl 1020 (1128) +.+|++.|+|.|-.|++++--|...|+ ++.++|+...+.+ .... +. ...+ +++.+..+|+|+++.|. T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283) T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283) T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC Confidence 458999999999999999999999998 6778876655443 2111 11 1112 24466789999999985 Q ss_pred C Q psy13054 1021 T 1021 (1128) Q Consensus 1021 t 1021 (1128) . T Consensus 205 G 205 (283) T PRK14027 205 G 205 (283) T ss_pred C Confidence 4 |
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>PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
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Probab=89.41 E-value=0.35 Score=57.13 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=32.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSR 988 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~ 988 (1128) .|.+++|.|||+|.+|..+++.|...|. ++.++|.. T Consensus 38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370) T PRK05600 38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370) T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC Confidence 6899999999999999999999999997 77778765 |
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>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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Probab=89.40 E-value=0.91 Score=53.38 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=58.0 Q ss_pred cCCCeEEEEEcC----------hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhc-CCccc-ChHhhhccCCEEEEecCCC Q psy13054 954 LKGATVGIVGLG----------NIGLETAKLLKAFKVSKILYTSRRVKEEGTAL-GAQLV-PLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 954 L~gktvGIIG~G----------~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~-g~~~~-~l~ell~~sDvV~l~lPlt 1021 (1128) +.||||||+|+- .-...++++|+..|++|.+|||-......... ++.+. +++++++.||+++++.- - T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414) T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414) T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H Confidence 899999999984 34678999999999999999976654432221 24444 79999999999998765 3 Q ss_pred cccccccCHHHHccCC Q psy13054 1022 KDTEQLIGRKQFSLMK 1037 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk 1037 (1128) ++-+.+ +-+.+ .|| T Consensus 387 ~ef~~~-d~~~~-~m~ 400 (414) T COG1004 387 DEFRDL-DFEKL-LMK 400 (414) T ss_pred HHHhcc-Chhhh-hcc Confidence 343333 33333 565 |
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>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
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Probab=89.34 E-value=0.54 Score=59.37 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=62.1 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----ChH----hhhccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----PLD----TLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~l~----ell~~sDvV~l~lPlt~~T~ 1025 (1128) ...+-|+|+|++|+.+++.|++.|.++++.|.+.++.+ .++.|.... +.+ .=+.++|.++++.+..+.+. T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621) T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621) T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH Confidence 46799999999999999999999999999998777655 444454321 222 23458999999998777665 Q ss_pred cccCHHHHccCCCCcEEEEc Q psy13054 1026 QLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~ 1045 (1128) .++ ...+.+.|+..+|-- T Consensus 480 ~i~--~~ar~~~p~~~iiaR 497 (621) T PRK03562 480 QLV--ELVKEHFPHLQIIAR 497 (621) T ss_pred HHH--HHHHHhCCCCeEEEE Confidence 543 234445566555443 |
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>PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=89.32 E-value=0.77 Score=55.27 Aligned_cols=33 Identities=27% Similarity=0.470 Sum_probs=31.6 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEE Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKIL 729 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~ 729 (1128) .+++|+||.|=|+||+|+..|+.|..+|++|++ T Consensus 224 ~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa 256 (445) T PRK14030 224 IDIKGKTVAISGFGNVAWGAATKATELGAKVVT 256 (445) T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE Confidence 468999999999999999999999999999999 |
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>PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
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Probab=89.24 E-value=0.66 Score=50.57 Aligned_cols=36 Identities=36% Similarity=0.368 Sum_probs=32.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSR 988 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~ 988 (1128) .|..++|+|||+|.+|..+|+.|...|.. +.++|.. T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212) T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212) T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC Confidence 68999999999999999999999888885 7777766 |
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>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
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Probab=89.20 E-value=1.5 Score=47.94 Aligned_cols=91 Identities=25% Similarity=0.319 Sum_probs=58.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-c-----ChHh-h----hccCCEEEEecCCCc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-V-----PLDT-L----CAESDFIFVTCALTK 1022 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~-----~l~e-l----l~~sDvV~l~lPlt~ 1022 (1128) .|++|.|+|.|.+|+.+++.++..|.+|++.++...+.+ ....+... . +..+ + -...|+++.+++... T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271) T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271) T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH Confidence 578999999999999999999999999988876544333 22333211 0 1111 1 234677777665321 Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcc Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) .-...++.|+++..+|+.+.... T Consensus 214 -----~~~~~~~~l~~~G~~v~~~~~~~ 236 (271) T cd05188 214 -----TLAQALRLLRPGGRIVVVGGTSG 236 (271) T ss_pred -----HHHHHHHhcccCCEEEEEccCCC Confidence 12345667777777777765543 |
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
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Probab=89.19 E-value=0.48 Score=53.63 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=70.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcC--------------Cccc-----------ChHh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALG--------------AQLV-----------PLDT 1006 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g--------------~~~~-----------~l~e 1006 (1128) ...+.++-++|+|-+|-..+-..+-.|+-|..+|-+....+ .+..| +-.. -+.| T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356) T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356) T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH Confidence 46778899999999999999999999998888877765433 22122 1111 1356 Q ss_pred hhccCCEEEEe--cCCCcccccccCHHHHccCCCCcEEEEcC Q psy13054 1007 LCAESDFIFVT--CALTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1007 ll~~sDvV~l~--lPlt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) ..++.|||+.. .|..|.-+ ++.++-.+.||||+++|+.+ T Consensus 241 ~~~~~DivITTAlIPGrpAP~-Lvt~~mv~sMkpGSViVDlA 281 (356) T COG3288 241 QAKEVDIVITTALIPGRPAPK-LVTAEMVASMKPGSVIVDLA 281 (356) T ss_pred HhcCCCEEEEecccCCCCCch-hhHHHHHHhcCCCcEEEEeh Confidence 78899999965 57666654 88999999999999999974 |
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>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
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Probab=89.08 E-value=0.61 Score=51.87 Aligned_cols=37 Identities=35% Similarity=0.443 Sum_probs=31.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128) .|.+++|.|+|.|.+|..+|+.|...|. ++.++|+.. T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240) T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240) T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc Confidence 6899999999999999999999998886 555666543 |
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
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Probab=89.00 E-value=0.45 Score=56.27 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=51.6 Q ss_pred EEEEEcChhhHHHHHHHhhCC-C-EEEEEeCCCCchh-h-hh---cCCcc--------cChHhhhccCCEEEEecCCCcc Q psy13054 959 VGIVGLGNIGLETAKLLKAFK-V-SKILYTSRRVKEE-G-TA---LGAQL--------VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 959 vGIIG~G~IG~~vA~~l~afG-~-~Vi~~d~~~~~~~-~-~~---~g~~~--------~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) |+|+|.|.+|+.+++.|...+ . +|++.|++..+.. . .. ..++. .+|.++++++|+|++|+|.. T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-- 78 (386) T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-- 78 (386) T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-- T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-- Confidence 689999999999999998765 4 8899987776643 1 11 11111 13778999999999999844 Q ss_pred cccccCHHHHcc-CCCCcEEEEc Q psy13054 1024 TEQLIGRKQFSL-MKPTAILVNT 1045 (1128) Q Consensus 1024 T~~li~~~~l~~-mk~ga~lIN~ 1045 (1128) ++...++. ++.|.-.|++ T Consensus 79 ----~~~~v~~~~i~~g~~yvD~ 97 (386) T PF03435_consen 79 ----FGEPVARACIEAGVHYVDT 97 (386) T ss_dssp ----GHHHHHHHHHHHT-EEEES T ss_pred ----hhHHHHHHHHHhCCCeecc Confidence 22333322 3556666664 |
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
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Probab=88.96 E-value=0.7 Score=52.93 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=36.0 Q ss_pred cCCCCCCEEEEEecC-hhhHHHHHHHhhCCCeEEEEcCCCc Q psy13054 696 IMGLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRV 735 (1128) Q Consensus 696 ~~~l~gktvGIiG~G-~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128) +.+++||+++|||.| .+|+-+|.+|..-|.+|..||++.+ T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~ 194 (301) T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST 194 (301) T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC Confidence 346899999999997 9999999999999999999998654 |
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>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
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Probab=88.94 E-value=0.98 Score=59.68 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=46.7 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhC-CCE-------------EEEEeCCCCchh--hhhc-CC---cc--cChHh---hh Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAF-KVS-------------KILYTSRRVKEE--GTAL-GA---QL--VPLDT---LC 1008 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~af-G~~-------------Vi~~d~~~~~~~--~~~~-g~---~~--~~l~e---ll 1008 (1128) -..|+|+|||.|.||+..|+.|... +.+ |.+.|++..+.. .... ++ .. .+.++ ++ T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v 646 (1042) T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV 646 (1042) T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh Confidence 4578999999999999999999654 333 777887665543 2222 32 11 24444 44 Q ss_pred ccCCEEEEecCC Q psy13054 1009 AESDFIFVTCAL 1020 (1128) Q Consensus 1009 ~~sDvV~l~lPl 1020 (1128) +++|+|++++|. T Consensus 647 ~~~DaVIsalP~ 658 (1042) T PLN02819 647 SQVDVVISLLPA 658 (1042) T ss_pred cCCCEEEECCCc Confidence 689999999995 |
|
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
---|
Probab=88.92 E-value=0.2 Score=61.27 Aligned_cols=87 Identities=9% Similarity=0.124 Sum_probs=53.1 Q ss_pred ccchhhhhhhhccCCceEEEcCC--CCCCCCHHHHHH---------hcCCceEEEeCCCCCCCHHHHhccCCCceEEEEc Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPV--SEGRMPRDIFIE---------KLKGCSALLCNPHQKVDKEVLDRSGENLKVIATF 110 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~--~~~~~~~eel~~---------~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~ 110 (1128) .+.|+...+|. ...|+|.+-.. .....+.++..+ .+.++|+|+- ...| +.+-++.+.++--+|+.. T Consensus 16 AltP~~v~~L~-k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlk-V~~P-~~~e~~~l~~g~tli~~l 92 (511) T TIGR00561 16 AATPKTVQQLL-KLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILK-VNAP-SDAEIAELPAGKALVSFI 92 (511) T ss_pred ccCHHHHHHHH-hCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEE-eCCC-CHHHHHhcCCCCEEEEEc Confidence 57788888775 34677766443 112234444432 1235777763 3333 445567666677777777 Q ss_pred CcccccccHHHHHhCCcEEEe Q psy13054 111 SVGHDHLHLDEIKSRGIRVGT 131 (1128) Q Consensus 111 gvG~DnIDl~aa~erGI~V~n 131 (1128) .-..|.=-++++.++||++.- T Consensus 93 ~p~~n~~ll~~l~~k~it~ia 113 (511) T TIGR00561 93 WPAQNPELMEKLAAKNITVLA 113 (511) T ss_pred CccCCHHHHHHHHHcCCEEEE Confidence 766655557888999999875 |
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
---|
Probab=88.80 E-value=0.56 Score=50.56 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=32.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRR 989 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~ 989 (1128) .|.+++|.|+|+|.+|.++++.|...|.. +.++|+.. T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197) T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197) T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc Confidence 68999999999999999999999999984 66777654 |
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
>PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=88.74 E-value=1.2 Score=51.57 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=58.1 Q ss_pred CeEEEEEc-ChhhHHHHHHHh---hCCCEEEEEeCCCCch----hhhhcC----Cc---ccChHhhhccCCEEEEecCCC Q psy13054 957 ATVGIVGL-GNIGLETAKLLK---AFKVSKILYTSRRVKE----EGTALG----AQ---LVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~---afG~~Vi~~d~~~~~~----~~~~~g----~~---~~~l~ell~~sDvV~l~lPlt 1021 (1128) ++|+|||. |.||+.++..+. ..+..+..+|...... +..... +. ..++.+.++.+|+|++++-.. T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312) T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312) T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC Confidence 57999999 999999997773 4556788888653321 111101 11 125568889999999987642 Q ss_pred cc---cc-cccC------HH---HHccCCCCcEEEEcCCCc Q psy13054 1022 KD---TE-QLIG------RK---QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1022 ~~---T~-~li~------~~---~l~~mk~ga~lIN~aRG~ 1049 (1128) .. || .++. ++ .+..-.+.+++|+++-.. T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312) T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312) T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch Confidence 21 11 1111 22 334446789999997765 |
|
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
---|
Probab=88.73 E-value=0.4 Score=54.30 Aligned_cols=98 Identities=9% Similarity=0.096 Sum_probs=61.0 Q ss_pred eeCCCCCCCCccccc--cCCccccceeeccccccccc---ccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHH Q psy13054 269 FLGPKKNGSQNPKWR--MGSKTDTNHYFGYNWFERSN---GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQ 342 (1128) Q Consensus 269 ilG~g~iG~~va~~~--~g~~~~~~~~~g~~~~~~~~---~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~ 342 (1128) ++|.|.+|..+++-. .|.. ...+++.+++..... .+++|++.+ +.+|++++||+|++++| ......+++ +. T Consensus 7 fIG~G~MG~aia~~L~~~g~~-~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~-~l 83 (272) T PRK12491 7 FIGCGNMGIAMIGGMINKNIV-SPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVIN-QI 83 (272) T ss_pred EECccHHHHHHHHHHHHCCCC-CCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHH-HH Confidence 677777777766521 1110 111345555322211 123566554 78889999999999999 455666663 22 Q ss_pred HhcCCCCcEEEEecCCCccCHHHHHHHHH Q psy13054 343 FSLMKPTAILINTSRGGLLDQEALVEFLK 371 (1128) Q Consensus 343 l~~MK~gaiLINtaRG~lVDe~AL~~AL~ 371 (1128) -...+++.++|.+.=| |+.+.|.+.|. T Consensus 84 ~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272) T PRK12491 84 KDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272) T ss_pred HHhhcCCcEEEEeCCC--CcHHHHHHhcC Confidence 2446788999999888 67777776663 |
|
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
---|
Probab=88.62 E-value=0.85 Score=54.02 Aligned_cols=72 Identities=18% Similarity=0.152 Sum_probs=49.0 Q ss_pred hhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHH Q psy13054 895 KARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKL 974 (1128) Q Consensus 895 ~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~ 974 (1128) ++.|.++...+......... +.+++.-+.|.. .....+.+++|.|||+|.+|..+++. T Consensus 96 ~~~g~p~~~~~~~s~~~~~~---------------y~r~i~l~~~g~-------~~q~~l~~~~VlvvG~GG~Gs~ia~~ 153 (376) T PRK08762 96 KDAGLPLERPRLLTDEQDER---------------YSRHLRLPEVGE-------EGQRRLLEARVLLIGAGGLGSPAALY 153 (376) T ss_pred HhcCCccccccCCCHHHHHH---------------HHHhcchhhcCH-------HHHHHHhcCcEEEECCCHHHHHHHHH Confidence 45677777777766555433 222222233431 11235899999999999999999999 Q ss_pred HhhCCC-EEEEEeCC Q psy13054 975 LKAFKV-SKILYTSR 988 (1128) Q Consensus 975 l~afG~-~Vi~~d~~ 988 (1128) |...|. ++.++|+. T Consensus 154 La~~Gvg~i~lvD~d 168 (376) T PRK08762 154 LAAAGVGTLGIVDHD 168 (376) T ss_pred HHHcCCCeEEEEeCC Confidence 999998 67778765 |
|
>PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=88.54 E-value=5.6 Score=48.81 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=33.3 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCC Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRV 990 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~ 990 (1128) ...||++.|.|. |.||+++|+.|...|++|++.+++.. T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~ 304 (520) T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAE 304 (520) T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH Confidence 568999999996 78999999999999999999886544 |
|
>PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
---|
Probab=88.48 E-value=0.77 Score=55.86 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=63.9 Q ss_pred CcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc-CCccc--C-hHhhhccCCEEEEecCCCc Q psy13054 949 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL-GAQLV--P-LDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 949 ~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~-g~~~~--~-l~ell~~sDvV~l~lPlt~ 1022 (1128) |.+.++.||+|.|||-|.++.+=++.|..+|++|.++.+...... .... .+++. . .++.+..+++|+.+....+ T Consensus 5 P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~ 84 (457) T PRK10637 5 PIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA 84 (457) T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH Confidence 445589999999999999999999999999999999976654332 1111 22221 1 2456678888777765432 Q ss_pred ccccccCHHHHccCCCCcEEEEcC Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) +|+...+.++...+++|++ T Consensus 85 -----~n~~i~~~a~~~~~lvN~~ 103 (457) T PRK10637 85 -----VNQRVSEAAEARRIFCNVV 103 (457) T ss_pred -----HhHHHHHHHHHcCcEEEEC Confidence 4666666666666777763 |
|
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
---|
Probab=88.48 E-value=0.44 Score=56.73 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=28.0 Q ss_pred CEEEEEecChhhHHHHHHHhh-CCCeEEE-EcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKA-FKVSKIL-YTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~a-fg~~vi~-y~~~ 733 (1128) .+|||.|+|+||+.++|.+.+ ++|++++ +||. T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~ 119 (421) T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF 119 (421) T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC Confidence 489999999999999999885 8999998 5654 |
|
>PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=88.38 E-value=0.96 Score=54.47 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=33.7 Q ss_pred cCCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 696 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 696 ~~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) +.+++||||.|.|+||+|+..|+.|..+|++|++..+ T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444) T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444) T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC Confidence 3468999999999999999999999999999999655 |
|
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=88.33 E-value=0.87 Score=55.54 Aligned_cols=108 Identities=22% Similarity=0.237 Sum_probs=69.9 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc--CCccc---ChHhhhccCCEEEEecCCCccc-- Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL--GAQLV---PLDTLCAESDFIFVTCALTKDT-- 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~--g~~~~---~l~ell~~sDvV~l~lPlt~~T-- 1024 (1128) +.||+++|+|+|.-|+++|+.|+..|++|+++|.+..... ..+. +.... ...+.+.+.|+|+..- .-+.+ T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp-gI~~~~p 84 (468) T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP-GISPYRP 84 (468) T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC-CCCCCCH Confidence 4689999999999999999999999999999996543221 1111 22221 1235667899887643 22221 Q ss_pred ---------ccccCHHHH--cc-CC-----CCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1025 ---------EQLIGRKQF--SL-MK-----PTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1025 ---------~~li~~~~l--~~-mk-----~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ..++++-.| .. ++ ...+-|-=+.|+.-...-+...|+. T Consensus 85 ~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 139 (468) T PRK04690 85 EALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA 139 (468) T ss_pred HHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh Confidence 124554443 33 32 2456677788888777777777764 |
|
>PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
---|
Probab=88.33 E-value=1.4 Score=51.54 Aligned_cols=88 Identities=25% Similarity=0.379 Sum_probs=57.8 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc-------ChHhhhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV-------PLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~-------~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .|++|.|.|.|.||...++.++++|.+|++.+...++.. ..+.|+..+ .+.++....|+|+-+... +.+ T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~~- 260 (360) T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VHA- 260 (360) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HHH- Confidence 578999999999999999999999999888766554422 334555321 122333346777766542 111 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) + ...++.++++..+|.++. T Consensus 261 --~-~~~~~~l~~~G~iv~vG~ 279 (360) T PLN02586 261 --L-GPLLGLLKVNGKLITLGL 279 (360) T ss_pred --H-HHHHHHhcCCcEEEEeCC Confidence 2 235667777777777753 |
|
>KOG0023|consensus | Back alignment and domain information |
---|
Probab=88.32 E-value=0.42 Score=54.50 Aligned_cols=38 Identities=32% Similarity=0.485 Sum_probs=34.6 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128) .||.+||+|+|.+|.--.+.+|||||+|.+.|....+. T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kk 218 (360) T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKK 218 (360) T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhH Confidence 69999999999999999999999999999999865444 |
|
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
---|
Probab=88.29 E-value=0.73 Score=47.97 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=48.6 Q ss_pred EEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc--------cChHhhhccCCEEEEecCCCcc Q psy13054 959 VGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL--------VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 959 vGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~--------~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) |.|+|. |.+|+.+++.|..-|.+|.+..++..+... ..+++. .++.+.++.+|+|+.+++.+.. T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183) T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183) T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc Confidence 678995 999999999999999999999877654332 223222 2456788899999999985444 |
... |
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
---|
Probab=88.26 E-value=0.99 Score=52.18 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=62.2 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChH-hhhccCCEEEEecCCCcccccccCHH Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLD-TLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~-ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .|.+|.|.|.|.+|...++.++++|++|++.+++..+.+ +++.|+..+ +.. +.-...|+++.+.... + .+ .. T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329) T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329) T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH Confidence 478999999999999999999999999888877665554 666776543 211 1112357766655432 2 22 35 Q ss_pred HHccCCCCcEEEEcCC Q psy13054 1032 QFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aR 1047 (1128) .++.++++..++.++- T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329) T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329) T ss_pred HHHhhCCCcEEEEEec Confidence 7788899999988774 |
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
---|
Probab=88.25 E-value=0.98 Score=50.81 Aligned_cols=45 Identities=29% Similarity=0.372 Sum_probs=34.9 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh-hhhcCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE-GTALGA 999 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~-~~~~g~ 999 (1128) .|++|.|+|.|.||...++.++++|++ |++.+....+.+ +++.|+ T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280) T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280) T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC Confidence 588999999999999999999999997 776654444433 444554 |
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
---|
Probab=88.25 E-value=0.95 Score=51.81 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=49.8 Q ss_pred CHHHHh---hcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 313 PLDTLC---AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 313 sLdeLl---~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) +++++. +++|+|++.+|-. .++.++ ++....+++|.++|+++-+.--+...+.+.+++..+. T Consensus 49 s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~ 113 (298) T TIGR00872 49 NLRELSQRLSAPRVVWVMVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113 (298) T ss_pred CHHHHHhhcCCCCEEEEEcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe Confidence 566654 5689999999977 788887 3566788999999999888878888888888876553 |
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
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Probab=88.14 E-value=0.58 Score=49.65 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=28.0 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) +|||||.|.+|+.+|..+...|++|..||+.. T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180) T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180) T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh Confidence 69999999999999999999999999999843 |
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
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Probab=88.05 E-value=0.52 Score=49.07 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=29.0 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) |+||||.|||||+-|.+.|.-|+--|.+|+.-.+. T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~ 36 (165) T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLRE 36 (165) T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-T T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecC Confidence 57999999999999999999999999998876543 |
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=87.99 E-value=0.98 Score=54.90 Aligned_cols=107 Identities=18% Similarity=0.217 Sum_probs=66.7 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc---CCcccChHhhhccCCEEEEecCCCccc----- Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL---GAQLVPLDTLCAESDFIFVTCALTKDT----- 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~---g~~~~~l~ell~~sDvV~l~lPlt~~T----- 1024 (1128) -.||+|+|+|+|.-|+++++.|+. |++|+++|....... ..+. .+.-....+.+.++|+|+.. |.-+.+ T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~S-PgI~~~~p~~~ 81 (454) T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLS-PGIPLTHEIVK 81 (454) T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEEC-CCCCCCCHHHH Confidence 357899999999999999999996 999999995543221 1111 11101123456789988764 322221 Q ss_pred ------ccccCHHHH--ccCCC-CcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1025 ------EQLIGRKQF--SLMKP-TAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1025 ------~~li~~~~l--~~mk~-ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ..++++-+| ..+++ ..+=|-=+.|+.-...-+...|+. T Consensus 82 ~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454) T PRK01368 82 IAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454) T ss_pred HHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh Confidence 124444333 23332 355566688888877777777876 |
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>PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
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Probab=87.94 E-value=1.1 Score=55.98 Aligned_cols=68 Identities=13% Similarity=0.174 Sum_probs=50.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC--CcccC---hHhhhccCCEEEEecCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG--AQLVP---LDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g--~~~~~---l~ell~~sDvV~l~lPl 1020 (1128) .+..|+|||||-|..|+.+++.++.+|++|+++|+....+. ..+.. ..+.+ +.++.+++|+|+..... T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~ 93 (577) T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH 93 (577) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC Confidence 47889999999999999999999999999999998765333 11111 11233 56677889999766443 |
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>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1 | Back alignment and domain information |
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Probab=87.93 E-value=2.4 Score=43.04 Aligned_cols=96 Identities=21% Similarity=0.299 Sum_probs=67.7 Q ss_pred HHHHHHhhCCCEEEEEeCCCCc-----hhhhhcCCcccCh-HhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEE Q psy13054 970 ETAKLLKAFKVSKILYTSRRVK-----EEGTALGAQLVPL-DTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILV 1043 (1128) Q Consensus 970 ~vA~~l~afG~~Vi~~d~~~~~-----~~~~~~g~~~~~l-~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI 1043 (1128) ..+++|...|.+|++=...... .+..+.|+..++- ++++++||+|+-.=|.+ .+.++.|++|.++| T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136) T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136) T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE Confidence 4567788889998764333211 1245567777754 58999999999766643 67889999999999 Q ss_pred EcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 1044 NTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 1044 N~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) -...-. ....+++.|.++++...++|-... T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136) T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136) T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC Confidence 887766 488899999999999888876543 |
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A .... |
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
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Probab=87.81 E-value=0.71 Score=46.94 Aligned_cols=36 Identities=25% Similarity=0.316 Sum_probs=31.0 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCC-CeEEEEcCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSR 733 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg-~~vi~y~~~ 733 (1128) ++++++++|+|.|.+|+.+++.+...| .++.+|++. T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155) T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155) T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC Confidence 467899999999999999999999886 678888764 |
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
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Probab=87.79 E-value=0.38 Score=49.02 Aligned_cols=91 Identities=22% Similarity=0.315 Sum_probs=57.8 Q ss_pred eEEEEEc-ChhhHHHHHHHh--hCCCEEEEEeCCCCchh--hhhc-------CC--c-ccChHhhhccCCEEEEecCC-- Q psy13054 958 TVGIVGL-GNIGLETAKLLK--AFKVSKILYTSRRVKEE--GTAL-------GA--Q-LVPLDTLCAESDFIFVTCAL-- 1020 (1128) Q Consensus 958 tvGIIG~-G~IG~~vA~~l~--afG~~Vi~~d~~~~~~~--~~~~-------g~--~-~~~l~ell~~sDvV~l~lPl-- 1020 (1128) +|+|||. |++|..+|-.|. .++-+++.+|....... +.+. .. . .....+.++.||+|+++.-. T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~~ 81 (141) T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVPR 81 (141) T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTSS T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccccc Confidence 7999999 999999999985 55568999997755443 1111 01 1 12567889999999998843 Q ss_pred Cc-ccc-ccc--CH-------HHHccCCCCcEEEEcCCC Q psy13054 1021 TK-DTE-QLI--GR-------KQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1021 t~-~T~-~li--~~-------~~l~~mk~ga~lIN~aRG 1048 (1128) .+ ++| .++ |. +.+.+..|.+++|.++.. T Consensus 82 ~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNP 120 (141) T PF00056_consen 82 KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNP 120 (141) T ss_dssp STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSS T ss_pred cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCc Confidence 22 121 111 11 234455678888888543 |
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
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Probab=87.74 E-value=1 Score=52.62 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=44.2 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh--hhcC--CcccC---hHhhhccCCEEEE Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG--TALG--AQLVP---LDTLCAESDFIFV 1016 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~--~~~g--~~~~~---l~ell~~sDvV~l 1016 (1128) ||||||-|..|+.+++.++.+|.+|+++|+....+.. .+.. ..+.+ +.++++.+|+|+. T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352) T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352) T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe Confidence 6999999999999999999999999999886644431 1111 11223 6778888998864 |
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=87.73 E-value=1.1 Score=54.27 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=71.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhh--cCCccc--C-hHhhhccCCEEEEecCCCc-- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTA--LGAQLV--P-LDTLCAESDFIFVTCALTK-- 1022 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~--~g~~~~--~-l~ell~~sDvV~l~lPlt~-- 1022 (1128) ++.++++.|+|.|.+|..+|+.|...|.+|.++|.....+. ... .|+... . -++.+..+|+|+..---.+ T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~ 81 (445) T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ 81 (445) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC Confidence 35689999999999999999999999999999986654321 111 255432 1 2345578999886433222 Q ss_pred -ccc-------cccCH-HHHcc-CC---CCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1023 -DTE-------QLIGR-KQFSL-MK---PTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1023 -~T~-------~li~~-~~l~~-mk---~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) .-+ .++++ +.+.. ++ ...+-|-=+.|+.-...-+...|+.. T Consensus 82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~ 135 (445) T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC 135 (445) T ss_pred HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc Confidence 211 13322 33333 32 24566666888888777777778753 |
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>PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=87.66 E-value=0.66 Score=56.53 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=62.6 Q ss_pred cCHHHHhh---cCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCC Q psy13054 312 VPLDTLCA---ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 387 (1128) Q Consensus 312 vsLdeLl~---~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EP 387 (1128) .+++|+++ ++|+|++.+|-...++.++ ...+..+++|.++|+.+-+.--|...+.+.+++..+.....=|.-.++ T Consensus 55 ~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470) T PTZ00142 55 HTLEELVNSLKKPRKVILLIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470) T ss_pred CCHHHHHhcCCCCCEEEEEeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH Confidence 48999987 5899999999999999998 456778999999999999999999999999999877655554555444 |
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>PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
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Probab=87.58 E-value=0.48 Score=55.72 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=32.0 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128) .|.+++|.|||+|.+|..+++.|...|. ++.++|... T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355) T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355) T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE Confidence 6899999999999999999999998887 566666554 |
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>TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
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Probab=87.58 E-value=6.1 Score=46.58 Aligned_cols=65 Identities=15% Similarity=0.228 Sum_probs=46.9 Q ss_pred ccCCCeEEEEEcC--------hhhHHHHHHHhhCCCEEEEEeCCCCc--hh-h-------hhcCCcc---cChHhhhccC Q psy13054 953 GLKGATVGIVGLG--------NIGLETAKLLKAFKVSKILYTSRRVK--EE-G-------TALGAQL---VPLDTLCAES 1011 (1128) Q Consensus 953 ~L~gktvGIIG~G--------~IG~~vA~~l~afG~~Vi~~d~~~~~--~~-~-------~~~g~~~---~~l~ell~~s 1011 (1128) .+.|+||+|+|.| ++.+..+..+..|||+|.+..|..-. +. . ++.|.+. .++++.++.+ T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357) T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357) T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC Confidence 3789999999864 34467788899999999998776321 11 1 1345432 4899999999 Q ss_pred CEEEEe Q psy13054 1012 DFIFVT 1017 (1128) Q Consensus 1012 DvV~l~ 1017 (1128) |||..- T Consensus 247 Dvvyt~ 252 (357) T TIGR03316 247 DIVYPK 252 (357) T ss_pred CEEEEC Confidence 999975 |
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
>PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
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Probab=87.49 E-value=1.7 Score=49.88 Aligned_cols=109 Identities=20% Similarity=0.133 Sum_probs=71.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-hcCCcc------------cChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-ALGAQL------------VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-~~g~~~------------~~l~ell~~sDvV~l~lPlt~ 1022 (1128) .+|+|+|.|.||.-+|-+|...|.+|.++++.....+ .. +.|... ....+.....|+|++++-.. T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305) T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305) T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH- Confidence 4799999999999999999999999999987543222 11 112211 11122345789999988743 Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ++...+ +.....+.+++.+|-.--|= -.++.+.+.+.+.++.++ T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g 125 (305) T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFA 125 (305) T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEE Confidence 344443 23445567888888776653 456667777766666554 |
|
>PLN02477 glutamate dehydrogenase | Back alignment and domain information |
---|
Probab=87.49 E-value=1.2 Score=53.25 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.4 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) .+++|+||.|.|+|++|+.+|+.|...|++|++... T Consensus 202 ~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410) T PLN02477 202 KSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410) T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC Confidence 358999999999999999999999999999996544 |
|
>PRK08223 hypothetical protein; Validated | Back alignment and domain information |
---|
Probab=87.45 E-value=1.2 Score=50.77 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=31.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128) .|++++|.|||+|.+|..+|+.|...|. ++.++|... T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287) T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287) T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC Confidence 6899999999999999999999998887 455666543 |
|
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
---|
Probab=87.31 E-value=0.63 Score=45.44 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=53.9 Q ss_pred EcChhhHHHHHHHhhC----CCEEEEEeCCCC---chh--hhhcCCcccChHhhhc--cCCEEEEecCCCcccccccCHH Q psy13054 963 GLGNIGLETAKLLKAF----KVSKILYTSRRV---KEE--GTALGAQLVPLDTLCA--ESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 963 G~G~IG~~vA~~l~af----G~~Vi~~d~~~~---~~~--~~~~g~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) |+|.||+.+++.++.. ++++.++-.+.. ... .........++++++. ..|+|+=|.+..+-+ .- T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-----~~ 75 (117) T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-----EY 75 (117) T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-----HH T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-----HH Confidence 8999999999999765 677776644441 111 1112233458999998 999999985543222 33 Q ss_pred HHccCCCCcEEEEcCCCccc Q psy13054 1032 QFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lV 1051 (1128) ..+.++.|.-+|-.+-+.+. T Consensus 76 ~~~~L~~G~~VVt~nk~ala 95 (117) T PF03447_consen 76 YEKALERGKHVVTANKGALA 95 (117) T ss_dssp HHHHHHTTCEEEES-HHHHH T ss_pred HHHHHHCCCeEEEECHHHhh Confidence 45667789999999888888 |
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
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Probab=87.25 E-value=1.6 Score=51.61 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=39.8 Q ss_pred cCCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc---cccCchhhh Q psy13054 696 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV---KEEGQLFSL 744 (1128) Q Consensus 696 ~~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~---~~~~~~~~~ 744 (1128) +.+++|+||.|=|+||+|+..|+.+...|.++++.+...- .+++-+..+ T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~ 253 (411) T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEA 253 (411) T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHH Confidence 3448999999999999999999999988999999987654 333444433 |
|
>PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
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Probab=87.21 E-value=7.3 Score=45.62 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=45.8 Q ss_pred ccCCCeEEEEEcC---hhhHHHHHHHh-hCCCEEEEEeCCCCc--hh----hhhcCCc--c-cChHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVGLG---NIGLETAKLLK-AFKVSKILYTSRRVK--EE----GTALGAQ--L-VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~G---~IG~~vA~~l~-afG~~Vi~~d~~~~~--~~----~~~~g~~--~-~~l~ell~~sDvV~l~ 1017 (1128) .+.|++|++||-+ ++....+..+. -+|+++.+..|..-. .. ..+.|.. . .+++|.++.+|||..- T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338) T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338) T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc Confidence 3789999999995 67777777655 449999888765422 11 1233433 2 4899999999999973 |
|
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=87.19 E-value=1 Score=54.87 Aligned_cols=110 Identities=22% Similarity=0.308 Sum_probs=71.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-----h-hhhcCCccc--ChHhhhccCCEEEEecCCCccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-----E-GTALGAQLV--PLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-----~-~~~~g~~~~--~l~ell~~sDvV~l~lPlt~~T 1024 (1128) .+.++++.|||.|.+|.++|+.|+..|.+|.++|...... . ..+.|++.. .-.+....+|+|++..--.+.+ T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~ 92 (480) T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDA 92 (480) T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCC Confidence 5678999999999999999999999999999998654211 1 234465543 1112456799998776333322 Q ss_pred c--------c--ccCHHHH--ccCCC----CcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1025 E--------Q--LIGRKQF--SLMKP----TAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1025 ~--------~--li~~~~l--~~mk~----ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) . + +++.-.+ ..+.+ ..+-|-=+.|+.-...-|...|+. T Consensus 93 ~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480) T PRK01438 93 PLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480) T ss_pred HHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH Confidence 1 1 3333232 33422 246666688888777777777765 |
|
>PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=87.18 E-value=0.56 Score=55.17 Aligned_cols=33 Identities=36% Similarity=0.280 Sum_probs=29.2 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) ++|||||+|.||+.+|+.++..|.++..|+..+ T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~ 33 (359) T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDP 33 (359) T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCC Confidence 579999999999999999999998888887543 |
|
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
---|
Probab=87.11 E-value=1.2 Score=55.68 Aligned_cols=130 Identities=15% Similarity=0.256 Sum_probs=0.0 Q ss_pred hCCcEEEEcC-CCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCccc--ccCCCeEEEEEcChhhHHHH Q psy13054 896 ARGIRVGSVG-HISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIM--GLKGATVGIVGLGNIGLETA 972 (1128) Q Consensus 896 ~~GI~V~n~p-~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~--~L~gktvGIIG~G~IG~~vA 972 (1128) +.|-++.+-. ......+||.++-+=|-+.| |+ .-+... .|.+.+|.|||.|.+|..+| T Consensus 294 Kl~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WR------llP~l~~ekL~~~kVLIvGaGGLGs~VA 354 (664) T TIGR01381 294 KLQPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WR------LHPDLQLERYSQLKVLLLGAGTLGCNVA 354 (664) T ss_pred CcCceEechhhhcCHHHHHHHHHHHHHHHHh-------------hh------cCChhhHHHHhcCeEEEECCcHHHHHHH Q ss_pred HHHhhCCC-EEEEEeCCCCchh--hhhcCCcccCh--------------------------------------------- Q psy13054 973 KLLKAFKV-SKILYTSRRVKEE--GTALGAQLVPL--------------------------------------------- 1004 (1128) Q Consensus 973 ~~l~afG~-~Vi~~d~~~~~~~--~~~~g~~~~~l--------------------------------------------- 1004 (1128) +.|.+.|. ++.++|...-... .++.-++..+. T Consensus 355 ~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~ 434 (664) T TIGR01381 355 RCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPE 434 (664) T ss_pred HHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhh Q ss_pred --------HhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1005 --------DTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1005 --------~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) .++++++|+|+.++- +-++|.+++ ....+.+..+||.+-| T Consensus 435 ~~~d~~~l~~Li~~~DvV~d~tD-n~esR~L~n---~~c~~~~kplI~aAlG 482 (664) T TIGR01381 435 LEKDIARLEQLIKDHDVVFLLLD-SREARWLPT---VLCSRHKKIAISAALG 482 (664) T ss_pred ccccHHHHHHHHhhCCEEEECCC-CHHHHHHHH---HHHHHhCCCEEEEEec |
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
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Probab=87.11 E-value=4.9 Score=51.60 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=103.8 Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHh Q psy13054 897 RGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLK 976 (1128) Q Consensus 897 ~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~ 976 (1128) .+|+|.|.- .+ -+|=-+++-+++.+|-. ...+...++.|.|.|.-|-.+|+.|. T Consensus 152 ~~ip~f~DD-~~--GTa~v~lA~l~na~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l~ 205 (752) T PRK07232 152 MDIPVFHDD-QH--GTAIISAAALLNALELV-----------------------GKKIEDVKIVVSGAGAAAIACLNLLV 205 (752) T ss_pred cCCCeeccc-cc--hHHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEECccHHHHHHHHHHH Confidence 379999983 32 34445677777776521 12367789999999999999999999 Q ss_pred hCCC---EEEEEeCCC----Cc----hhhh-hc--CCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEE Q psy13054 977 AFKV---SKILYTSRR----VK----EEGT-AL--GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 1042 (1128) Q Consensus 977 afG~---~Vi~~d~~~----~~----~~~~-~~--g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l 1042 (1128) ..|. +++++|++. .+ ...+ .+ .-...+|.|+++.+|+++=. . +-|+|+++.++.|.+..++ T Consensus 206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~pii 280 (752) T PRK07232 206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPII 280 (752) T ss_pred HcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEE Confidence 9998 677777542 11 1111 11 11224899999999988842 2 2489999999999999999 Q ss_pred EEcCCCccc-CHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCC Q psy13054 1043 VNTSRGGLL-DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTS 1097 (1128) Q Consensus 1043 IN~aRG~lV-de~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHia 1097 (1128) .=.|....- +.+..+++ ..|.|.+.|- .-.| =+.-|+++-|=++ T Consensus 281 falsNP~~E~~p~~a~~~-~~~~i~atGr-----s~~p-----nQ~NN~~~FPgi~ 325 (752) T PRK07232 281 FALANPDPEITPEEAKAV-RPDAIIATGR-----SDYP-----NQVNNVLCFPYIF 325 (752) T ss_pred EecCCCCccCCHHHHHHh-cCCEEEEECC-----cCCC-----Ccccceeecchhh Confidence 999988863 23333332 2234555441 1111 1345777777543 |
|
>PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=86.94 E-value=1.5 Score=44.45 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=47.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--C----hHhhhccCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--P----LDTLCAESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--~----l~ell~~sDvV~l~lP 1019 (1128) .++++..||+| -|..+|..|...|.+|++.|.+....+ +++.+...+ + --++.+.+|+|-..-| T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134) T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134) T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC Confidence 56889999999 999999999999999999997766543 333443321 2 2356777887776666 |
|
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=86.92 E-value=2.1 Score=51.56 Aligned_cols=109 Identities=18% Similarity=0.201 Sum_probs=70.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc---ChHhhhccCCEEEEecCCCccccc- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQ- 1026 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~~- 1026 (1128) ++.++++.|+|+|..|...++.|+..|.+|.++|....... ....|+... .-.+.++..|+|+ +-|.-+...- T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv-~spgi~~~~~~ 81 (438) T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIV-ASPGIALAHPS 81 (438) T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEE-ECCCCCCCCHH Confidence 35688999999999999999999999999999997654321 112254432 1234567788655 4554443222 Q ss_pred ----------ccCH-HHHcc-CCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1027 ----------LIGR-KQFSL-MKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1027 ----------li~~-~~l~~-mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ++.. +.+.. ++...+-|-=+.|+.-...-|...|+. T Consensus 82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438) T PRK03806 82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438) T ss_pred HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH Confidence 2232 33333 333455566688888877777777875 |
|
>PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
---|
Probab=86.64 E-value=6.3 Score=50.93 Aligned_cols=179 Identities=12% Similarity=0.089 Sum_probs=115.5 Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhh Q psy13054 898 GIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA 977 (1128) Q Consensus 898 GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~a 977 (1128) +|+|.|.- .+ -+|=.+++-+++.+|-. ...+...+|.|.|.|.-|..+|+.+.. T Consensus 161 ~ip~f~DD-~~--GTa~v~la~l~~a~~~~-----------------------~~~~~~~~iv~~GaGaag~~~a~~l~~ 214 (763) T PRK12862 161 KIPVFHDD-QH--GTAIIVAAALLNGLKLV-----------------------GKDIEDVKLVASGAGAAALACLDLLVS 214 (763) T ss_pred CCceEecC-cc--cHHHHHHHHHHHHHHHh-----------------------CCChhhcEEEEEChhHHHHHHHHHHHH Confidence 69999983 32 34445677777766521 124678899999999999999999999 Q ss_pred CCC---EEEEEeCCC-------C--ch---h-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcE Q psy13054 978 FKV---SKILYTSRR-------V--KE---E-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAI 1041 (1128) Q Consensus 978 fG~---~Vi~~d~~~-------~--~~---~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~ 1041 (1128) .|. +++.+|+.. . .. . +... ...+|.|+++.+|+++=.- +-++|+++.++.|.+..+ T Consensus 215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~pi 287 (763) T PRK12862 215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPL 287 (763) T ss_pred cCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCE Confidence 999 677887442 1 11 1 1111 2348999999999988422 148999999999999999 Q ss_pred EEEcCCCccc-CHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCC-----CcHHHHHHHHHHHHHHH Q psy13054 1042 LVNTSRGGLL-DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSS-----ATKAVRDEKSSTSAENI 1115 (1128) Q Consensus 1042 lIN~aRG~lV-de~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag-----~t~e~~~~~~~~~~~nl 1115 (1128) +.=.|....- ..+..+++ ..|.|.+.| ....| =+.-|+++-|=++- ......++|...+++-| T Consensus 288 ifalsNP~~E~~p~~a~~~-~~~~i~atG-----rs~~p-----~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~al 356 (763) T PRK12862 288 IFALANPTPEILPEEARAV-RPDAIIATG-----RSDYP-----NQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAI 356 (763) T ss_pred EEeCCCCcccCCHHHHHHh-cCCEEEEEC-----CcCCC-----CcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHH Confidence 9999988752 22333333 223455544 11112 24568888886543 22223345555565666 Q ss_pred HHHHc Q psy13054 1116 IRGYK 1120 (1128) Q Consensus 1116 ~~~l~ 1120 (1128) ..+.. T Consensus 357 a~~~~ 361 (763) T PRK12862 357 AELAR 361 (763) T ss_pred Hhccc Confidence 55443 |
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>PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
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Probab=86.60 E-value=0.46 Score=54.31 Aligned_cols=109 Identities=14% Similarity=0.063 Sum_probs=67.4 Q ss_pred eeCCCCCCCCccccccCCccccceeeccccccc-ccccccCCcc-cCHHHHhhcCCEEEEecCCCcccccccCH--HHHh Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFER-SNGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR--KQFS 344 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~-~~~~~~g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn~--~~l~ 344 (1128) ++|+|.+|..+++.....+ ..+..+++.++ +...+.|+.. .+..|+.++||+|++++|-.+..+..+.. ..++ T Consensus 5 ~IGlG~MG~~ma~~L~~~G---~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292) T PRK15059 5 FIGLGIMGTPMAINLARAG---HQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292) T ss_pred EEccCHHHHHHHHHHHHCC---CeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc Confidence 5677777766655321111 12222332211 1112335543 37889999999999999977776665532 2467 Q ss_pred cCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec Q psy13054 345 LMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128) Q Consensus 345 ~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128) .+++|.++|+++=..--....+.+.+++..+ .-+|. T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~--~~vda 117 (292) T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG--DYLDA 117 (292) T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--CEEEe Confidence 7899999999977666666678888877543 24553 |
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>cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
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Probab=86.57 E-value=0.88 Score=48.03 Aligned_cols=32 Identities=34% Similarity=0.375 Sum_probs=28.2 Q ss_pred eEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128) +|+|||+|.+|..+++.|...|. ++.++|... T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174) T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174) T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE Confidence 58999999999999999998888 488888765 |
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
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Probab=86.45 E-value=0.87 Score=45.91 Aligned_cols=37 Identities=30% Similarity=0.406 Sum_probs=31.5 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) +++||++.|||.|.+|++++..+...|++-|..-+|. T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135) T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135) T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC Confidence 5899999999999999999999999999844444443 |
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=86.02 E-value=1.5 Score=52.95 Aligned_cols=106 Identities=20% Similarity=0.167 Sum_probs=69.2 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhh--cCCccc---ChHhhhccCCEEEEecCCCcccc-- Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTA--LGAQLV---PLDTLCAESDFIFVTCALTKDTE-- 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~--~g~~~~---~l~ell~~sDvV~l~lPlt~~T~-- 1025 (1128) +-+++|||+|.+|..+|+.|+..|.+|.++|....... ..+ .|+... .-.+.+.++|+|+.. |.-+.+. T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~s-p~i~~~~p~ 84 (448) T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIIS-PGLALDTPA 84 (448) T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEEC-CCCCCCCHH Confidence 45799999999999999999999999999997654321 222 255442 123456789988753 3333221 Q ss_pred ---------cccCHH-HH-ccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1026 ---------QLIGRK-QF-SLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1026 ---------~li~~~-~l-~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) .++++- .+ ..++...+-|-=+.|+.-...-+...|+. T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448) T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448) T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh Confidence 234332 33 23344566677788888877777777875 |
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>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
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Probab=86.00 E-value=2.7 Score=51.00 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=72.6 Q ss_pred cCCCeEEEEEc----ChhhHHHHHHHhhCCC--EEEEEeCCCCchhhhhcCCcc-cChHhhhccCCEEEEecCCCccccc Q psy13054 954 LKGATVGIVGL----GNIGLETAKLLKAFKV--SKILYTSRRVKEEGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 954 L~gktvGIIG~----G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) ++-++|.|||. |++|..+.+.++..|+ +|+.++|....- .|+.. .+++++-..-|.+++++| .+.+.. T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i----~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~~ 79 (447) T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI----LGVKAYPSVLEIPDPVDLAVIVVP-AKYVPQ 79 (447) T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc----CCccccCCHHHCCCCCCEEEEecC-HHHHHH Confidence 45688999999 8899999999998876 677777654321 35543 489999888999999999 344444 Q ss_pred ccCHHHHccCCCCcEEE-EcCCCcc-----cCHHHHHHHHhcCCceEE Q psy13054 1027 LIGRKQFSLMKPTAILV-NTSRGGL-----LDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lI-N~aRG~l-----Vde~aL~~aL~~g~i~ga 1068 (1128) ++. .+...+-.+++| .-+-++. -.++.|.+..+++.+.-. T Consensus 80 ~l~--e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447) T TIGR02717 80 VVE--ECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447) T ss_pred HHH--HHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE Confidence 553 233344444544 3333332 235778888877766543 |
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
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Probab=85.98 E-value=0.6 Score=46.87 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=31.0 Q ss_pred CCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc Q psy13054 701 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128) Q Consensus 701 gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128) -.+|||||.|++|..+++.++.-|..|..+.+|.... T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~s 46 (127) T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPAS 46 (127) T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-H T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccc Confidence 4689999999999999999999999999998865433 |
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
>TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
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Probab=85.89 E-value=1.6 Score=49.26 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=42.9 Q ss_pred eEEEEE-cChhhHHHHHHHhh-CCCEEEEEeCCCCc-h---hh-h-----hcCCcc-cChHhhhccCCEEEEecC Q psy13054 958 TVGIVG-LGNIGLETAKLLKA-FKVSKILYTSRRVK-E---EG-T-----ALGAQL-VPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 958 tvGIIG-~G~IG~~vA~~l~a-fG~~Vi~~d~~~~~-~---~~-~-----~~g~~~-~~l~ell~~sDvV~l~lP 1019 (1128) +|+|+| +|+||+.+++.+.. -++++++.-++... . .. . ..++.. .+++++...+|+|+.+.| T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~ 77 (266) T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT 77 (266) T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC Confidence 799999 69999999999874 58888775443211 1 11 1 123433 478888667999999886 |
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>PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
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Probab=85.75 E-value=1.1 Score=53.88 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=31.6 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCC-eEEEEcCCC Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 734 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~-~vi~y~~~~ 734 (1128) +.|++++|||.|.||+.+++.+...|. +++++++.. T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423) T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423) T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH Confidence 678999999999999999999999998 677776643 |
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>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
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Probab=85.67 E-value=0.87 Score=51.84 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=30.5 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) ++|+|||.|.+|..+|..+...|.+|++||... T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291) T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291) T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH Confidence 689999999999999999999999999999743 |
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>PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
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Probab=85.37 E-value=1.3 Score=50.31 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=45.2 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh--hhhcCCcccChHhh-hccCCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE--GTALGAQLVPLDTL-CAESDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~--~~~~g~~~~~l~el-l~~sDvV~l~lPlt 1021 (1128) ++++.|+|.|..+++++..|...|++ |.++++...+.+ +...+.... +++ ...+|+|+++.|.. T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~G 189 (272) T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIG 189 (272) T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccc Confidence 46899999999999999999999984 888887665544 222222211 111 24589999998853 |
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>PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
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Probab=85.33 E-value=3.4 Score=52.99 Aligned_cols=121 Identities=12% Similarity=0.028 Sum_probs=88.4 Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhh Q psy13054 898 GIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA 977 (1128) Q Consensus 898 GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~a 977 (1128) .|+|.|.- .+ -+|=.+++-+++.+|-. ...+...+|.|.|.|.-|..+++.+.. T Consensus 157 ~ipvf~DD-~q--GTa~v~lA~llnal~~~-----------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~ 210 (764) T PRK12861 157 KIPVFHDD-QH--GTAITVSAAFINGLKVV-----------------------GKSIKEVKVVTSGAGAAALACLDLLVD 210 (764) T ss_pred CCCeeccc-cc--hHHHHHHHHHHHHHHHh-----------------------CCChhHcEEEEECHhHHHHHHHHHHHH Confidence 79999983 32 34445677777776621 124677899999999999999999999 Q ss_pred CCC---EEEEEeCCC-------C--ch---hhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEE Q psy13054 978 FKV---SKILYTSRR-------V--KE---EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL 1042 (1128) Q Consensus 978 fG~---~Vi~~d~~~-------~--~~---~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l 1042 (1128) .|. +++++|+.. . .+ ..... ....+|.|+++.+|+++= +. +-|+|+++.++.|.+.+++ T Consensus 211 ~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~-~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PII 284 (764) T PRK12861 211 LGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE-TDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLI 284 (764) T ss_pred cCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh-cCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEE Confidence 998 678777432 1 11 11111 123489999999998873 22 2489999999999999999 Q ss_pred EEcCCCcc Q psy13054 1043 VNTSRGGL 1050 (1128) Q Consensus 1043 IN~aRG~l 1050 (1128) .=.|.... T Consensus 285 FaLsNPtp 292 (764) T PRK12861 285 LALANPTP 292 (764) T ss_pred EECCCCCc Confidence 99988875 |
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>COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
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Probab=85.27 E-value=1.7 Score=48.39 Aligned_cols=98 Identities=24% Similarity=0.290 Sum_probs=68.1 Q ss_pred cccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-------hhhcCCc-ccChHhhhccCCEEEEecCCCc Q psy13054 952 MGLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-------GTALGAQ-LVPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 952 ~~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-------~~~~g~~-~~~l~ell~~sDvV~l~lPlt~ 1022 (1128) .++...|++|+|+ |.||..+|+.|.+-+++....-+...... ..+.+.. ..|++..+.+.|+++-.....+ T Consensus 163 idlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~~ 242 (351) T COG5322 163 IDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASMPK 242 (351) T ss_pred cCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeecCC Confidence 3688899999999 99999999999999887666542221111 1122332 2478887778887775544332 Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHH Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~ 1054 (1128) -..|+.. .+|||+++|+-++..=||+. T Consensus 243 --g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351) T COG5322 243 --GVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351) T ss_pred --Cceechh---hccCCeEEEcCCcCcccccc Confidence 2456654 46899999999999887765 |
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>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
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Probab=85.24 E-value=0.97 Score=46.48 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=54.9 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCH--- Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR--- 1030 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~--- 1030 (1128) ..|++|++||+= +++++.++.-+.++.++|..++.......++.....++++++||+|++.-. | ++|. T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs----T--lvN~Ti~ 79 (147) T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS----T--LVNGTID 79 (147) T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH----H--CCTTTHH T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee----e--eecCCHH Confidence 478999999972 237888888899999999776543322223334467889999999997544 1 2332 Q ss_pred HHHccCCCCcEEEEcCCCc Q psy13054 1031 KQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~ 1049 (1128) +.|+..++++.+|=+|-.. T Consensus 80 ~iL~~~~~~~~vil~GpS~ 98 (147) T PF04016_consen 80 DILELARNAREVILYGPSA 98 (147) T ss_dssp HHHHHTTTSSEEEEESCCG T ss_pred HHHHhCccCCeEEEEecCc Confidence 4666666666666554433 |
; PDB: 3L5O_B 3NPG_A. |
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
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Probab=85.17 E-value=1.5 Score=52.93 Aligned_cols=90 Identities=20% Similarity=0.130 Sum_probs=59.0 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc--CCcc-----cC---h-HhhhccCCEEEEecCCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL--GAQL-----VP---L-DTLCAESDFIFVTCALT 1021 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~--g~~~-----~~---l-~ell~~sDvV~l~lPlt 1021 (1128) +..+++.|+|+|.+|+.+++.|...|.+|+++|....... ..+. ++.. .+ | +.-+.++|.|+++++.. T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453) T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453) T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc Confidence 4568899999999999999999999999999987665433 2221 2221 11 2 22457899999888865 Q ss_pred cccccccCHHHHccCCCCcEEEEc Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) .. +++-......+.+..+++-+ T Consensus 309 ~~--n~~~~~~~~~~~~~~ii~~~ 330 (453) T PRK09496 309 EA--NILSSLLAKRLGAKKVIALV 330 (453) T ss_pred HH--HHHHHHHHHHhCCCeEEEEE Confidence 33 33333344555555555543 |
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>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
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Probab=84.89 E-value=2.2 Score=48.79 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=51.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEE-EeCCCCchh-hhhcCCcccChHh-hhccCCEEEEecCCCcccccccCHH Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKIL-YTSRRVKEE-GTALGAQLVPLDT-LCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~-~d~~~~~~~-~~~~g~~~~~l~e-ll~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .|+++.|+|.|.||...++.++.+|+++++ .+....+.. +.... ..+.++ .-...|+|+-+.... .+ + .. T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~-~~---~-~~ 216 (308) T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDP-SL---I-DT 216 (308) T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCH-HH---H-HH Confidence 467899999999999999999999998554 443322222 11111 111111 112467777655521 11 1 24 Q ss_pred HHccCCCCcEEEEcC Q psy13054 1032 QFSLMKPTAILVNTS 1046 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~a 1046 (1128) .++.|+++..++.+| T Consensus 217 ~~~~l~~~G~iv~~G 231 (308) T TIGR01202 217 LVRRLAKGGEIVLAG 231 (308) T ss_pred HHHhhhcCcEEEEEe Confidence 567777777777765 |
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>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
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Probab=84.86 E-value=1.7 Score=45.73 Aligned_cols=36 Identities=33% Similarity=0.393 Sum_probs=31.9 Q ss_pred CCCCCEEEEEecChh-hHHHHHHHhhCCCeEEEEcCC Q psy13054 698 GLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 698 ~l~gktvGIiG~G~I-G~~va~r~~afg~~vi~y~~~ 733 (1128) ++.||++-|||.|.+ |+.+|+.|...|.++...+++ T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168) T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168) T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC Confidence 589999999999985 888999999999987777764 |
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
>PRK07411 hypothetical protein; Validated | Back alignment and domain information |
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Probab=84.83 E-value=0.83 Score=54.42 Aligned_cols=85 Identities=22% Similarity=0.150 Sum_probs=54.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--h-------hhcC-----------------Cc----- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--G-------TALG-----------------AQ----- 1000 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~-------~~~g-----------------~~----- 1000 (1128) .|...+|+|||+|.+|..+|+.|...|. ++.++|...-... . .+.| ++ T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~ 114 (390) T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE 114 (390) T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe Confidence 6899999999999999999999988887 5556665432111 0 0001 10 Q ss_pred -c---cChHhhhccCCEEEEecCCCcccccccCHHHHccCCC Q psy13054 1001 -L---VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKP 1038 (1128) Q Consensus 1001 -~---~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ 1038 (1128) . ....++++++|+|+.|+ .+.+++.++|....+.-+| T Consensus 115 ~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390) T PRK07411 115 TRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390) T ss_pred cccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC Confidence 1 12346778888777654 4667777777655544333 |
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>PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
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Probab=84.74 E-value=2.5 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=27.5 Q ss_pred CeEEEEEcChhhHHHHHHHhh-CCCEEEEEeC Q psy13054 957 ATVGIVGLGNIGLETAKLLKA-FKVSKILYTS 987 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~ 987 (1128) .+|||.|||+|||.++|.+.+ ++++|++.++ T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINd 117 (421) T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVND 117 (421) T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecC Confidence 489999999999999999875 8999988665 |
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>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
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Probab=84.74 E-value=0.95 Score=51.43 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=29.9 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) ++|+|||.|.+|..+|..+..-|.+|++||.. T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288) T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288) T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCC Confidence 58999999999999999999889999999874 |
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>PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
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Probab=84.65 E-value=2.4 Score=50.07 Aligned_cols=87 Identities=29% Similarity=0.401 Sum_probs=52.7 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc-hh-hhhcCCccc----C---hHhhhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-EE-GTALGAQLV----P---LDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~-~~-~~~~g~~~~----~---l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .|++|.|.|.|.+|...++.++++|++|++.++..++ .+ +++.|+..+ + +.++....|+|+-+.... .+ T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~-~~- 255 (375) T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAE-HA- 255 (375) T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcH-HH- Confidence 5889999999999999999999999998888765443 22 344554321 1 112223356666554321 11 Q ss_pred cccCHHHHccCCCCcEEEEcC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~a 1046 (1128) + ...++.++++..++.++ T Consensus 256 --~-~~~~~~l~~~G~iv~vG 273 (375) T PLN02178 256 --L-LPLFSLLKVSGKLVALG 273 (375) T ss_pred --H-HHHHHhhcCCCEEEEEc Confidence 1 12344455555555554 |
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>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
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Probab=84.50 E-value=2.6 Score=48.92 Aligned_cols=90 Identities=18% Similarity=0.270 Sum_probs=58.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CC-CEEEEEeCCCCchh-hhhcCCcccChHhhhc--cCCEEEEecCCCcccccccC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FK-VSKILYTSRRVKEE-GTALGAQLVPLDTLCA--ESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG-~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~ 1029 (1128) .|.+|.|+|.|.||...++.++. +| .+|++.++...+.+ ++..+... ..+++.. ..|+|+-+.... .+...+ T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~-~~~~~~~~~g~d~viD~~G~~-~~~~~~- 239 (341) T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY-LIDDIPEDLAVDHAFECVGGR-GSQSAI- 239 (341) T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee-ehhhhhhccCCcEEEECCCCC-ccHHHH- Confidence 47899999999999999999986 54 67888887655544 33333322 1222222 368888777631 111122 Q ss_pred HHHHccCCCCcEEEEcCC Q psy13054 1030 RKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aR 1047 (1128) ...++.++++..+|.++- T Consensus 240 ~~~~~~l~~~G~iv~~G~ 257 (341) T cd08237 240 NQIIDYIRPQGTIGLMGV 257 (341) T ss_pred HHHHHhCcCCcEEEEEee Confidence 246778899999888763 |
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
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Probab=84.37 E-value=1 Score=51.70 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=30.4 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) ++|||||.|.+|..+|..+..-|.+|++||+.. T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308) T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308) T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH Confidence 479999999999999999999999999999853 |
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>PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
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Probab=84.36 E-value=2.5 Score=48.61 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=53.8 Q ss_pred CCeEEEEEcChhhHHHHHHHh-hCCCEEEEE-eCCCCch--h-hhhcCCcc--cChHhhhc-----cCCEEEEecCCCcc Q psy13054 956 GATVGIVGLGNIGLETAKLLK-AFKVSKILY-TSRRVKE--E-GTALGAQL--VPLDTLCA-----ESDFIFVTCALTKD 1023 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~-afG~~Vi~~-d~~~~~~--~-~~~~g~~~--~~l~ell~-----~sDvV~l~lPlt~~ 1023 (1128) ..++||||.|+||+..+..+. .-++++.+. |...... . +++.|+.. .++++++. +.|+|+.+.|.. T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302) T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302) T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH-- Confidence 457999999999999666655 336676644 4333222 1 45567654 47899885 578899988843 Q ss_pred cccccCHHHHccCCCCcEEEEcC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .+. +-.....+.|..+|+-+ T Consensus 82 ~H~---e~a~~a~eaGk~VID~s 101 (302) T PRK08300 82 AHV---RHAAKLREAGIRAIDLT 101 (302) T ss_pred HHH---HHHHHHHHcCCeEEECC Confidence 111 11222345677777665 |
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>PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
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Probab=84.27 E-value=1 Score=50.38 Aligned_cols=32 Identities=25% Similarity=0.254 Sum_probs=27.0 Q ss_pred EEEEEecChhhHHHHHHHhhCCC----eEEEEcCCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKV----SKILYTSRR 734 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~----~vi~y~~~~ 734 (1128) +|||||+|++|+++++.+..-|. ++++|++|. T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~ 37 (266) T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSN 37 (266) T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCC Confidence 69999999999999999987776 788884443 |
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>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
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Probab=84.26 E-value=1.1 Score=51.45 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=29.9 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) ++|||||.|.+|..+|..+..-|.+|++||+. T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311) T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311) T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECC Confidence 68999999999999999999999999999974 |
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>PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
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Probab=84.23 E-value=1.2 Score=54.99 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=47.4 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCC-eEEEEcCCCccccC--c-------hh---hhHHHHHhhc----CCChhhhh Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG--Q-------LF---SLVYDFCRYS----IGGVTIKR 760 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~-~vi~y~~~~~~~~~--~-------~~---~~~~~la~~~----pg~~~t~~ 760 (1128) ++.+++|+|||.|.+|+.+++-+...|. ++.+|++...+... . .+ .-+.+.+..+ -.|+.+.. T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p 342 (519) T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP 342 (519) T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC Confidence 3778999999999999999999999997 57777664332211 0 00 0122223333 55666666 Q ss_pred hhhHHHHHHh Q psy13054 761 LVKKTFILSF 770 (1128) Q Consensus 761 l~~~~~l~~~ 770 (1128) ++.++.++.+ T Consensus 343 vI~~e~l~~~ 352 (519) T PLN00203 343 LFLKEHVEAL 352 (519) T ss_pred eeCHHHHHHh Confidence 7777776665 |
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>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
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Probab=84.22 E-value=1.1 Score=42.54 Aligned_cols=65 Identities=20% Similarity=0.136 Sum_probs=42.7 Q ss_pred CCeEEEEEcChhhHHHHHHH-hhCCCEE-EEEeCCCCchhhhhcCCccc-ChHhhhcc--CCEEEEecCC Q psy13054 956 GATVGIVGLGNIGLETAKLL-KAFKVSK-ILYTSRRVKEEGTALGAQLV-PLDTLCAE--SDFIFVTCAL 1020 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l-~afG~~V-i~~d~~~~~~~~~~~g~~~~-~l~ell~~--sDvV~l~lPl 1020 (1128) ..+++|+|+|+.|++++... +..|+++ .++|..+.+....-.++... +++++.+. .|+-++++|. T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~ 72 (96) T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA 72 (96) T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH Confidence 35799999999999987544 3344433 45565554332222355555 78887777 9999999994 |
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
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Probab=84.22 E-value=1.2 Score=54.12 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=33.3 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) +.+|+++|+|+|..|.++|+.|+..|.+|.++|... T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458) T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458) T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC Confidence 568999999999999999999999999999999643 |
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>PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
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Probab=84.19 E-value=1.9 Score=49.97 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=61.9 Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHh--hCCCEEEEEeCCCCchhhhh---c--CCccc------ChHhhhccCCEEEEecC Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLK--AFKVSKILYTSRRVKEEGTA---L--GAQLV------PLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~--afG~~Vi~~d~~~~~~~~~~---~--g~~~~------~l~ell~~sDvV~l~lP 1019 (1128) +..++|+|||. |+||..+|..+. ...-+++.+|.......+.+ . ..... +..+.++.||+|++++- T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321) T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321) T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC Confidence 56679999999 999999999998 45458889987322221111 0 11111 12689999999998776 Q ss_pred CCcc---cc-cccCH------H---HHccCCCCcEEEEcCCCcccCH Q psy13054 1020 LTKD---TE-QLIGR------K---QFSLMKPTAILVNTSRGGLLDQ 1053 (1128) Q Consensus 1020 lt~~---T~-~li~~------~---~l~~mk~ga~lIN~aRG~lVde 1053 (1128) .... |+ .++.. + .+..-.+.++++.++-+--+-. T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~ 132 (321) T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTV 132 (321) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHH Confidence 4221 11 12222 2 2333467788988877655433 |
|
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
---|
Probab=84.14 E-value=1.6 Score=47.52 Aligned_cols=63 Identities=21% Similarity=0.211 Sum_probs=49.1 Q ss_pred EEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcCCcc--------cChHhhhccCCEEEEecCCC Q psy13054 959 VGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALGAQL--------VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 959 vGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g~~~--------~~l~ell~~sDvV~l~lPlt 1021 (1128) |.|+|. |.+|+.+++.|..-+.+|.+..+...... ....|++. .+|.+.++.+|.|++++|.. T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233) T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233) T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc Confidence 678996 99999999999999999999876664332 23455543 24677899999999999954 |
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
>COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
---|
Probab=84.04 E-value=14 Score=44.14 Aligned_cols=203 Identities=16% Similarity=0.107 Sum_probs=122.5 Q ss_pred ccEEEEccccCCc--CChhhh--------hhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCcccccc Q psy13054 876 LKVITTFSVGYDH--LELHEI--------KARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 945 (1128) Q Consensus 876 LK~I~~~~aGvd~--idl~a~--------~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~ 945 (1128) +|.+.-.-.|++- +|...| .+..|+|.|.-=- -+|=.+++-+++.+|- T Consensus 135 Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDqq---GTaiv~lA~llnalk~------------------- 192 (432) T COG0281 135 VKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQQ---GTAIVTLAALLNALKL------------------- 192 (432) T ss_pred HHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCccccccc---HHHHHHHHHHHHHHHH------------------- Confidence 3444445555543 444444 2446888887432 3444566777766552 Q ss_pred ccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCC---EEEEEeCCCC----chh-----hh-----hcCCcccChHhhh Q psy13054 946 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKV---SKILYTSRRV----KEE-----GT-----ALGAQLVPLDTLC 1008 (1128) Q Consensus 946 ~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~---~Vi~~d~~~~----~~~-----~~-----~~g~~~~~l~ell 1008 (1128) ....|...+|.+.|.|.-|-.+++.+.+.|+ +++++|+..- ++. .. +..-.+.. ++.+ T Consensus 193 ----~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~ 267 (432) T COG0281 193 ----TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLAL 267 (432) T ss_pred ----hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccc Confidence 1224788999999999999999999999999 5777776521 100 00 00001111 5588 Q ss_pred ccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccC Q psy13054 1009 AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQL 1087 (1128) Q Consensus 1009 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~ 1087 (1128) ..+|+++=+ . +.|.|.++.++.|.+.+++.=+|-...--....+..-..| .|-+- .-|. .|- +. T Consensus 268 ~~adv~iG~-S----~~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaivaT------Grsd---~Pn-Qv 332 (432) T COG0281 268 AGADVLIGV-S----GVGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVAT------GRSD---YPN-QV 332 (432) T ss_pred cCCCEEEEc-C----CCCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEEe------CCCC---Ccc-cc Confidence 889998732 2 1289999999999999999988877642222222222222 33222 2332 222 77 Q ss_pred CCeEECCCCCCCcH-----HHHHHHHHHHHHHHHHHHc Q psy13054 1088 DNCVLTPHTSSATK-----AVRDEKSSTSAENIIRGYK 1120 (1128) Q Consensus 1088 pNvilTPHiag~t~-----e~~~~~~~~~~~nl~~~l~ 1120 (1128) -|+++-|-+.-..- ..-++|...+++-|..+.. T Consensus 333 NNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~ 370 (432) T COG0281 333 NNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAR 370 (432) T ss_pred cceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhcc Confidence 89999998764322 2335566666777766643 |
|
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=84.02 E-value=2.1 Score=51.26 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=64.2 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhh--ccCCEEEEecCCCccc-------cccc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLC--AESDFIFVTCALTKDT-------EQLI 1028 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell--~~sDvV~l~lPlt~~T-------~~li 1028 (1128) +|.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+...+ ++.+ .++|+|+.. |.-+.+ +.++ T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~s-p~i~~~~~~~~~a~~i~ 78 (401) T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPS-PGIPPSHPLIQKAKNLI 78 (401) T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEEC-CCCCCCCHHHHHHHHHh Confidence 5899999999999999999 99999999855332212233544422 2233 468977654 322221 2234 Q ss_pred CHHH-HccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1029 GRKQ-FSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1029 ~~~~-l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ++-. +....+..+-|-=+.|+.-...-+...|+. T Consensus 79 ~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401) T PRK03815 79 SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401) T ss_pred hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH Confidence 3332 233223366777788988877777777875 |
|
>PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=83.82 E-value=1.2 Score=51.07 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=29.0 Q ss_pred CCEEEEEecChhhHHHHHHHhhCCC--eEEEEcCC Q psy13054 701 GATVGIVGLGNIGLETAKLLKAFKV--SKILYTSR 733 (1128) Q Consensus 701 gktvGIiG~G~IG~~va~r~~afg~--~vi~y~~~ 733 (1128) -++|||||+|.||..+|+.++..|. +|++|++. T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307) T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307) T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC Confidence 3789999999999999999997774 78999874 |
|
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
---|
Probab=83.81 E-value=1.7 Score=50.47 Aligned_cols=89 Identities=24% Similarity=0.251 Sum_probs=56.1 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc---------ChHhhhc------cCC----EE Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV---------PLDTLCA------ESD----FI 1014 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~---------~l~ell~------~sD----vV 1014 (1128) .|.+|.|+|.|.||...++.+++.|.+|++.+....+.. +.+.|+..+ ++.+.+. ..| +| T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v 245 (349) T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI 245 (349) T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE Confidence 478999999999999999999999999888876554443 444554321 1111111 122 55 Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) +-+.. .+.+ -...++.++++..++..+.. T Consensus 246 ~d~~g-~~~~----~~~~~~~l~~~G~iv~~G~~ 274 (349) T TIGR03201 246 FECSG-SKPG----QESALSLLSHGGTLVVVGYT 274 (349) T ss_pred EECCC-ChHH----HHHHHHHHhcCCeEEEECcC Confidence 54443 2221 12346677888888887653 |
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
---|
Probab=83.59 E-value=2.8 Score=47.81 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=43.8 Q ss_pred CeEEEEEcChhhHHHHHHHh-hCCCEEEE-EeCCCCch--h-hhhcCCcc--cChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLK-AFKVSKIL-YTSRRVKE--E-GTALGAQL--VPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~-afG~~Vi~-~d~~~~~~--~-~~~~g~~~--~~l~ell~--~sDvV~l~lPlt 1021 (1128) .++||||.|+||+..+..+. .-++++.. +|+..... . +++.|+.. .+.++++. +-|+|+++.|.. T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~ 75 (285) T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK 75 (285) T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH Confidence 36999999999998865554 33566665 44444322 2 45566643 37888885 578899999843 |
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
---|
Probab=83.57 E-value=2.5 Score=48.87 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=58.4 Q ss_pred eEEEEEc-ChhhHHHHHHHhhCC--CEEEEEeCCCCchhhhh--cC-----Ccc-c---ChHhhhccCCEEEEecCCCc- Q psy13054 958 TVGIVGL-GNIGLETAKLLKAFK--VSKILYTSRRVKEEGTA--LG-----AQL-V---PLDTLCAESDFIFVTCALTK- 1022 (1128) Q Consensus 958 tvGIIG~-G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~~~~--~g-----~~~-~---~l~ell~~sDvV~l~lPlt~- 1022 (1128) +|+|||. |+||..+|-.|...+ -+++.+|.......+.+ .+ +.. . ++.+.++.||+|+++.-... T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312) T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312) T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC Confidence 5899999 999999999886444 47888987652222111 11 111 1 23689999999999876421 Q ss_pred --cccc-cc--CH-------HHHccCCCCcEEEEcCCCc Q psy13054 1023 --DTEQ-LI--GR-------KQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1023 --~T~~-li--~~-------~~l~~mk~ga~lIN~aRG~ 1049 (1128) .+|- ++ |. +.+..-.|++++|+++-.- T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPv 119 (312) T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPV 119 (312) T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCch Confidence 1111 11 11 2345557999999997653 |
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
---|
Probab=83.49 E-value=1.7 Score=49.63 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=34.7 Q ss_pred CCCCCCEEEEEecCh-hhHHHHHHHhhCCCeEEEEcCC Q psy13054 697 MGLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 697 ~~l~gktvGIiG~G~-IG~~va~r~~afg~~vi~y~~~ 733 (1128) .+++||++.|||.|+ +|+-+|..|...|++|..+|++ T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286) T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286) T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC Confidence 468999999999999 9999999999999999999985 |
|
>PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=83.40 E-value=1.8 Score=47.70 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=57.4 Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--h-hhcCCccc--Ch-HhhhccCCEEEEecCCCccc Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--G-TALGAQLV--PL-DTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~-~~~g~~~~--~l-~ell~~sDvV~l~lPlt~~T 1024 (1128) ...+.|++|.|||-|.++.+=++.|..+|++|.++.|...... . ....+++. +. ++-+..+++|+.++... + T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~- 97 (223) T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-K- 97 (223) T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-H- Confidence 3378899999999999999999999999999999987665432 1 11112221 11 23456777777766522 2 Q ss_pred ccccCHHHHccCCCCcEEEEc Q psy13054 1025 EQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~ 1045 (1128) +|+...+..+.-..++|+ T Consensus 98 ---vN~~I~~~a~~~~~lvn~ 115 (223) T PRK05562 98 ---LNNKIRKHCDRLYKLYID 115 (223) T ss_pred ---HHHHHHHHHHHcCCeEEE Confidence 344444445544455554 |
|
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=83.35 E-value=1.7 Score=50.63 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=51.7 Q ss_pred CCeEEEEEc-ChhhHHHHHHHhhCCC---EEEEEeCCCCchh-hhhcC--CcccChH-hhhccCCEEEEecCCCcccccc Q psy13054 956 GATVGIVGL-GNIGLETAKLLKAFKV---SKILYTSRRVKEE-GTALG--AQLVPLD-TLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 956 gktvGIIG~-G~IG~~vA~~l~afG~---~Vi~~d~~~~~~~-~~~~g--~~~~~l~-ell~~sDvV~l~lPlt~~T~~l 1027 (1128) +++|+|+|. |.+|+++.++|..-|. ++....+...... ..-.+ ....+++ +.+..+|+|+.++|.. .+ T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s--- 76 (334) T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VS--- 76 (334) T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HH--- Confidence 368999998 9999999999988554 3344433322211 11111 1222332 3457899999999844 23 Q ss_pred cCHHHHcc-CCCCcEEEEcCC Q psy13054 1028 IGRKQFSL-MKPTAILVNTSR 1047 (1128) Q Consensus 1028 i~~~~l~~-mk~ga~lIN~aR 1047 (1128) ++...+ ++.|+++|+.|. T Consensus 77 --~~~~~~~~~~G~~VIDlS~ 95 (334) T PRK14874 77 --KKYAPKAAAAGAVVIDNSS 95 (334) T ss_pred --HHHHHHHHhCCCEEEECCc Confidence 232222 256889998763 |
|
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
---|
Probab=83.28 E-value=1.4 Score=47.84 Aligned_cols=36 Identities=33% Similarity=0.356 Sum_probs=30.3 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128) ++++|+|.|+||+.+|+|+..-|-+|+.=.++.++. T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~ 37 (211) T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKA 37 (211) T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhH Confidence 589999999999999999999998776665655544 |
|
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
---|
Probab=83.14 E-value=1.6 Score=52.63 Aligned_cols=76 Identities=24% Similarity=0.248 Sum_probs=52.4 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc---------cCchhhh---HHHHHhhc------CCChhhhh Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE---------EGQLFSL---VYDFCRYS------IGGVTIKR 760 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~---------~~~~~~~---~~~la~~~------pg~~~t~~ 760 (1128) ..+|+|.|+|+|.-|.++|+.|...|.+|.++|.+...+ ++..+.. .++.-..+ ||=|.|.- T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448) T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448) T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCH Confidence 458999999999999999999999999999999654441 1222222 11112222 99999998 Q ss_pred hhhHHHHHHhcceEEe Q psy13054 761 LVKKTFILSFGGLVVT 776 (1128) Q Consensus 761 l~~~~~l~~~~~~~~~ 776 (1128) +|.+.. +.+.-|++ T Consensus 85 ~v~~A~--~~gi~i~~ 98 (448) T COG0771 85 LVEAAK--AAGIEIIG 98 (448) T ss_pred HHHHHH--HcCCcEEe Confidence 887653 44444544 |
|
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
---|
Probab=83.13 E-value=2.1 Score=46.64 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=33.8 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCc Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVK 991 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~ 991 (1128) .+.++++.|+|. |.||+.+++.|...|++|++.+++..+ T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~ 41 (251) T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA 41 (251) T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH Confidence 367899999997 899999999999999999998866543 |
|
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
---|
Probab=83.04 E-value=1.7 Score=41.75 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=32.4 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) +++||++-|||.|++|.+=++.+...|.++.+|.+.- T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103) T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103) T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch Confidence 5899999999999999999999999999999999864 |
|
>PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
---|
Probab=82.91 E-value=16 Score=42.23 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=46.7 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCcc---cChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQL---VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~~---~~l~ell~~sDvV~l~l 1018 (1128) .+.|++|++||=+ ++.+..+..+..||++|.+..|..-.+. .+..|... .++ +.++.+|||..-. T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302) T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302) T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec Confidence 3789999999984 6678888999999999999877653321 12235442 354 5689999999733 |
|
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=82.88 E-value=1.4 Score=50.26 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=30.1 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) ++|+|||.|.+|..+|..+..-|.+|++||.. T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292) T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292) T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC Confidence 68999999999999999999999999999974 |
|
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
---|
Probab=82.69 E-value=5.5 Score=47.89 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=69.4 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h----h--hcCCccc--ChHhhhccCCEEEEecCC---Cccc- Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G----T--ALGAQLV--PLDTLCAESDFIFVTCAL---TKDT- 1024 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~----~--~~g~~~~--~l~ell~~sDvV~l~lPl---t~~T- 1024 (1128) ++.|||+|.+|.++|+.|+..|.+|.++|....... . . ..|++.. .-.+.+..+|+|+..--- +|+- T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433) T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433) T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH Confidence 478999999999999999999999999996544221 1 1 2355442 124556789987754321 2221 Q ss_pred ------ccccCHHH-H-ccCCCCcEEEEcCCCcccCHHHHHHHHhcCC Q psy13054 1025 ------EQLIGRKQ-F-SLMKPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1025 ------~~li~~~~-l-~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128) ..++++-+ + ..++...+-|.=+.|+.-...-+...|+... T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 128 (433) T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG 128 (433) T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC Confidence 12343332 2 3334456777778999888887778887643 |
|
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
---|
Probab=82.67 E-value=5.7 Score=45.87 Aligned_cols=110 Identities=23% Similarity=0.359 Sum_probs=65.6 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhCCC--EEEEEeCCC--Cchhhh---------hcCC--cc--c-ChHhhhccCCEEEEe Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAFKV--SKILYTSRR--VKEEGT---------ALGA--QL--V-PLDTLCAESDFIFVT 1017 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~afG~--~Vi~~d~~~--~~~~~~---------~~g~--~~--~-~l~ell~~sDvV~l~ 1017 (1128) ++|+|+|. |.+|..++..|...|. +|+.+|+.. ++.... ..+. .. . + .+.++.||+|+++ T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit 79 (309) T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT 79 (309) T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe Confidence 47999998 9999999999987775 488998743 222110 0111 11 1 3 3559999999999 Q ss_pred cCCCcc---cc--------cccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHH----HhcCCceEEE Q psy13054 1018 CALTKD---TE--------QLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEF----LKDKKIGGAG 1069 (1128) Q Consensus 1018 lPlt~~---T~--------~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~a----L~~g~i~gaa 1069 (1128) ...... +| .++. ...+....+++++|+++ ..+|.-..+-. +...++.|.+ T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g 146 (309) T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG 146 (309) T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc Confidence 863221 21 1110 01244555788888887 45554443322 4455666664 |
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
>TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
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Probab=82.63 E-value=2.8 Score=49.07 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=66.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCC-Cchh--hhhcCCc-ccChHhhhccCCEEEEecCCC-cccccccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRR-VKEE--GTALGAQ-LVPLDTLCAESDFIFVTCALT-KDTEQLIG 1029 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~-~~~~--~~~~g~~-~~~l~ell~~sDvV~l~lPlt-~~T~~li~ 1029 (1128) .+|||||. .+|+.-++.++.. ++++++.-++. .+.. ++.+|+. +.+++|++...|++++++|.+ |...|. T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343) T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343) T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH-- Confidence 57999999 6899999888765 47777654443 3333 4556764 468999999999999999853 332221 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) +-..+.|+.|.-++.=---.+-+-++|+++.++..+... T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343) T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343) T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE Confidence 222334444433332211123455667777666555433 |
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
---|
Probab=82.55 E-value=1.7 Score=52.30 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=33.4 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +++||++.|+|.|.+|.++|+.|...|++|+++|.. T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447) T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGK 37 (447) T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC Confidence 468999999999999999999999999999999854 |
|
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
---|
Probab=82.49 E-value=2.8 Score=48.29 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=51.0 Q ss_pred eEEEEEc-ChhhHHHHHHHhhC-CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHcc Q psy13054 958 TVGIVGL-GNIGLETAKLLKAF-KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 (1128) Q Consensus 958 tvGIIG~-G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~ 1035 (1128) +|+|+|. |..|.++.++|..- .+++.....+.. ....+.+++++++|++++++|.. .++.+.. .+ T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~~~~~--~~-- 69 (310) T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAREAVS--LV-- 69 (310) T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHHHHHH--HH-- Confidence 6999998 99999999999754 456554443321 12235677888999999999954 3332321 11 Q ss_pred CCCCcEEEEcC Q psy13054 1036 MKPTAILVNTS 1046 (1128) Q Consensus 1036 mk~ga~lIN~a 1046 (1128) .+.|..+|+.| T Consensus 70 ~~~g~~VIDlS 80 (310) T TIGR01851 70 DNPNTCIIDAS 80 (310) T ss_pred HhCCCEEEECC Confidence 24577788877 |
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
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Probab=82.46 E-value=3.2 Score=47.81 Aligned_cols=88 Identities=27% Similarity=0.388 Sum_probs=57.1 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-C------hHhhhccCCEEEEecCCCccccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-P------LDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~------l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .|.++.|.|.|.+|+.+++.++++|++|++.++...+.. ..+.|+..+ . ..++-...|+|+.+.+... T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337) T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337) T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc---- Confidence 467899999999999999999999999888876544433 333443221 1 1122345677776666321 Q ss_pred ccCHHHHccCCCCcEEEEcCC Q psy13054 1027 LIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aR 1047 (1128) .-...++.++++..+|+.+. T Consensus 245 -~~~~~~~~l~~~G~~v~~g~ 264 (337) T cd05283 245 -DLDPYLSLLKPGGTLVLVGA 264 (337) T ss_pred -hHHHHHHHhcCCCEEEEEec Confidence 12445666777777777654 |
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
>PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
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Probab=82.42 E-value=2.1 Score=50.00 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=40.8 Q ss_pred eEEEEEcChhhHH-HHHHH-hh-CCCEEEE-EeCCCCchh-hhhcC-Ccc-cChHhhhc--cCCEEEEecCCC Q psy13054 958 TVGIVGLGNIGLE-TAKLL-KA-FKVSKIL-YTSRRVKEE-GTALG-AQL-VPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 958 tvGIIG~G~IG~~-vA~~l-~a-fG~~Vi~-~d~~~~~~~-~~~~g-~~~-~~l~ell~--~sDvV~l~lPlt 1021 (1128) ++||||+|.|++. .+..+ .. -++++++ +|+...+.. ....+ ... .++++++. +-|+|++++|.. T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~ 75 (344) T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 75 (344) T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCch Confidence 6999999998864 34434 32 2677775 444332222 33333 333 48999996 579999999944 |
|
>PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=82.37 E-value=3.9 Score=47.63 Aligned_cols=107 Identities=18% Similarity=0.314 Sum_probs=63.2 Q ss_pred eEEEEEcChhhHHHHHHHhh--------CCCEEEEEeCCCCc---hh------h---hhcC----C--cccChHhhh-cc Q psy13054 958 TVGIVGLGNIGLETAKLLKA--------FKVSKILYTSRRVK---EE------G---TALG----A--QLVPLDTLC-AE 1010 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~a--------fG~~Vi~~d~~~~~---~~------~---~~~g----~--~~~~l~ell-~~ 1010 (1128) +|+|+|+|+||+.+++.+.. ++.+|+.+.++... +. . .+.+ . ...++++++ .+ T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326) T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326) T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC Confidence 69999999999999999865 67776654332210 00 0 0101 1 112456654 46 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCccc-CHHHHHHHHhcCCc Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL-DQEALVEFLKDKKI 1065 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lV-de~aL~~aL~~g~i 1065 (1128) +|+|+=+.|..++-..-. .-..+.++.|.-+|-..-|.+. .-+.|.+..+++.. T Consensus 82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~ 136 (326) T PRK06392 82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR 136 (326) T ss_pred CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC Confidence 899999888532111011 1235566778888877777765 45566666555543 |
|
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
---|
Probab=82.37 E-value=3.2 Score=48.73 Aligned_cols=89 Identities=24% Similarity=0.341 Sum_probs=59.6 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEE-EEeCCCCchh-hhh-cCCccc-C-hH--------hhh--ccCCEEEEecCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKI-LYTSRRVKEE-GTA-LGAQLV-P-LD--------TLC--AESDFIFVTCAL 1020 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi-~~d~~~~~~~-~~~-~g~~~~-~-l~--------ell--~~sDvV~l~lPl 1020 (1128) +.+|.|+|.|.||...+..++.+|+..+ +.|....+.+ +++ .+.... . .+ ++. ..+|+++-|.. T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350) T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350) T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC- Confidence 3399999999999999999999997544 4455555555 444 344322 1 11 222 24899998888 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) .+. .+ ...++..+++..++.+|=.. T Consensus 248 ~~~---~~-~~ai~~~r~gG~v~~vGv~~ 272 (350) T COG1063 248 SPP---AL-DQALEALRPGGTVVVVGVYG 272 (350) T ss_pred CHH---HH-HHHHHHhcCCCEEEEEeccC Confidence 322 12 35677788888888886553 |
|
>PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=82.21 E-value=1.6 Score=49.35 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=26.9 Q ss_pred EEEEEecChhhHHHHHHHhhCC--CeEEEEcCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFK--VSKILYTSR 733 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg--~~vi~y~~~ 733 (1128) +|||||+|++|+.+|+.++.-| .++.+||++ T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~ 34 (275) T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHN 34 (275) T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCC Confidence 6999999999999999998656 478888874 |
|
>PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=82.21 E-value=2.1 Score=48.18 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=41.2 Q ss_pred CEEEEEecChhhHHHHHHHhhC---CCeE-EEEcCCCcccc-----CchhhhHHHHHhh-c-----CCChhhhhhhhHHH Q psy13054 702 ATVGIVGLGNIGLETAKLLKAF---KVSK-ILYTSRRVKEE-----GQLFSLVYDFCRY-S-----IGGVTIKRLVKKTF 766 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~af---g~~v-i~y~~~~~~~~-----~~~~~~~~~la~~-~-----pg~~~t~~l~~~~~ 766 (1128) .+|||||+|+||+.|++.+..= ++++ .+|++...+.. ...++-+++|+.+ . -.+++.-+=.-..+ T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~i 82 (267) T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEGC 82 (267) T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHHHHHHHHHH Confidence 5899999999999999987641 2333 34555321111 1112226776433 2 44444444444555 Q ss_pred HHHhcceEEe Q psy13054 767 ILSFGGLVVT 776 (1128) Q Consensus 767 l~~~~~~~~~ 776 (1128) |++-.-++|. T Consensus 83 L~~g~dlvv~ 92 (267) T PRK13301 83 LTAGLDMIIC 92 (267) T ss_pred HhcCCCEEEE Confidence 5555444443 |
|
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
---|
Probab=82.17 E-value=1.6 Score=49.85 Aligned_cols=49 Identities=16% Similarity=0.469 Sum_probs=39.8 Q ss_pred CHHHHhhcCCEEEEecCCC-cccccccCHHHHhcCCCCcEEEEec--CCCcc Q psy13054 313 PLDTLCAESDFIFVTCALT-KDTEQLIGRKQFSLMKPTAILINTS--RGGLL 361 (1128) Q Consensus 313 sLdeLl~~SDiVslh~PLT-~~T~~lIn~~~l~~MK~gaiLINta--RG~lV 361 (1128) .++|.+.++|+|+-.+=.+ .+.-.|+.++.+++||||+++|-+| -|++| T Consensus 224 ~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~ 275 (371) T COG0686 224 NIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCF 275 (371) T ss_pred HHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCce Confidence 5899999999998776444 3467899999999999999999986 44444 |
|
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
---|
Probab=82.11 E-value=2.5 Score=50.10 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=45.7 Q ss_pred chHhHHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccCCccCCCCCCEEEEEe-cChhhHHHHHHHhhCCCeEEEEc Q psy13054 653 SSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVG-LGNIGLETAKLLKAFKVSKILYT 731 (1128) Q Consensus 653 ~~~aVAE~ai~llLa~~R~i~~~~~~~r~G~W~~~~~~~~~~~~~~l~gktvGIiG-~G~IG~~va~r~~afg~~vi~y~ 731 (1128) .....++-.+-.++...|+...- ..+.. ..-..++||||| +|.||+.+|+.++.-|.+|.+|+ T Consensus 66 l~~~~~~~i~~~i~~~s~~~q~~------~~~~~----------~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d 129 (374) T PRK11199 66 VPPDLIEDVLRRVMRESYSSEND------KGFKT----------LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILE 129 (374) T ss_pred CCHHHHHHHHHHHHHHHHHHhHH------hcccc----------cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeC Confidence 34444566777778777753321 11110 111458999999 99999999999999999999999 Q ss_pred CC Q psy13054 732 SR 733 (1128) Q Consensus 732 ~~ 733 (1128) +. T Consensus 130 ~~ 131 (374) T PRK11199 130 QD 131 (374) T ss_pred CC Confidence 63 |
|
>PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
---|
Probab=82.09 E-value=2.4 Score=49.67 Aligned_cols=86 Identities=23% Similarity=0.271 Sum_probs=50.8 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCC---EEEEEeCCCCch-hhhhcCC--cccChH-hhhccCCEEEEecCCCccccc Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKV---SKILYTSRRVKE-EGTALGA--QLVPLD-TLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~---~Vi~~d~~~~~~-~~~~~g~--~~~~l~-ell~~sDvV~l~lPlt~~T~~ 1026 (1128) ...+|+|||. |.+|+++.++|..-+. ++.......... .....+. ...+++ +.+..+|+|++++|.. .++ T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~- 83 (344) T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISK- 83 (344) T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHH- Confidence 4568999998 9999999999987443 333332222111 1111121 112222 4558899999999954 222 Q ss_pred ccCHHHHccC-CCCcEEEEcC Q psy13054 1027 LIGRKQFSLM-KPTAILVNTS 1046 (1128) Q Consensus 1027 li~~~~l~~m-k~ga~lIN~a 1046 (1128) +..... +.|+.+|+.| T Consensus 84 ----~~~~~~~~~g~~VIDlS 100 (344) T PLN02383 84 ----KFGPIAVDKGAVVVDNS 100 (344) T ss_pred ----HHHHHHHhCCCEEEECC Confidence 222222 4688888887 |
|
>PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
---|
Probab=82.03 E-value=2.5 Score=46.73 Aligned_cols=37 Identities=35% Similarity=0.467 Sum_probs=31.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR 989 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~ 989 (1128) .|.+++|.|||+|.+|..+++.|...|. ++.++|... T Consensus 24 ~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231) T PRK08328 24 KLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231) T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc Confidence 6899999999999999999999998887 466676543 |
|
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
---|
Probab=82.02 E-value=2.3 Score=48.99 Aligned_cols=89 Identities=27% Similarity=0.311 Sum_probs=58.2 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh-hhhcCCccc-C-----h---Hhhhc--cCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE-GTALGAQLV-P-----L---DTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~-~~~~g~~~~-~-----l---~ell~--~sDvV~l~lPlt 1021 (1128) .|.+|.|+|.|.+|...++.++.+|++ |++.++...+.+ +.+.|+..+ + . .++.. ..|+|+-+.... T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339) T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339) T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH Confidence 488999999999999999999999999 887765544433 444554321 1 1 12222 367777655422 Q ss_pred cccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) . .+ ...+..++++..++..+.. T Consensus 243 -~---~~-~~~~~~l~~~G~~v~~g~~ 264 (339) T cd08239 243 -A---AR-RLALEAVRPWGRLVLVGEG 264 (339) T ss_pred -H---HH-HHHHHHhhcCCEEEEEcCC Confidence 1 11 3456777888888877643 |
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
>PLN00106 malate dehydrogenase | Back alignment and domain information |
---|
Probab=81.93 E-value=2.8 Score=48.70 Aligned_cols=116 Identities=19% Similarity=0.242 Sum_probs=71.0 Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhh--CCCEEEEEeCCCCchhhhhc-------CCc----ccChHhhhccCCEEEEecC Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKA--FKVSKILYTSRRVKEEGTAL-------GAQ----LVPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~a--fG~~Vi~~d~~~~~~~~~~~-------g~~----~~~l~ell~~sDvV~l~lP 1019 (1128) -..++|+|||. |+||..+|..|.. +.-+++.+|.......+.+. .+. ..++.+.++.||+|+++.- T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323) T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323) T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC Confidence 34579999999 9999999999974 43478899876632211110 111 1235789999999998765 Q ss_pred CCcc---ccc-cc--CH-------HHHccCCCCcEEEEcCCCcc----cCHHHHHHH--HhcCCceEEE Q psy13054 1020 LTKD---TEQ-LI--GR-------KQFSLMKPTAILVNTSRGGL----LDQEALVEF--LKDKKIGGAG 1069 (1128) Q Consensus 1020 lt~~---T~~-li--~~-------~~l~~mk~ga~lIN~aRG~l----Vde~aL~~a--L~~g~i~gaa 1069 (1128) .... ++- ++ |. +.+....+.+++|+++-.-- +....+.+. +...++.|.+ T Consensus 96 ~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~ 164 (323) T PLN00106 96 VPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT 164 (323) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe Confidence 3221 221 11 11 23444568999999987764 444444443 2335666654 |
|
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
---|
Probab=81.78 E-value=1.5 Score=49.64 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=30.8 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128) ++|||||.|.+|..+|..+..-|.+|++||+... T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~ 37 (282) T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA 37 (282) T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH Confidence 5799999999999999999999999999997533 |
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
Query | 1128 | ||||
2gcg_A | 330 | Ternary Crystal Structure Of Human Glyoxylate Reduc | 4e-55 | ||
2h1s_A | 328 | Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE | 3e-53 | ||
1wwk_A | 307 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 2e-37 | ||
2dbr_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 1e-31 | ||
2dbq_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 8e-31 | ||
2cuk_A | 311 | Crystal Structure Of Tt0316 Protein From Thermus Th | 1e-30 | ||
3ba1_A | 333 | Structure Of Hydroxyphenylpyruvate Reductase From C | 2e-29 | ||
2d0i_A | 333 | Crystal Structure Ph0520 Protein From Pyrococcus Ho | 5e-29 | ||
4e5p_A | 332 | Thermostable Phosphite Dehydrogenase A176r Variant | 9e-28 | ||
4e5m_A | 329 | Thermostable Phosphite Dehydrogenase E175aA176R IN | 9e-28 | ||
1gdh_A | 320 | Crystal Structure Of A Nad-Dependent D-Glycerate De | 7e-27 | ||
4ebf_A | 334 | Semet Thermostable Phosphite Dehydrogenase Glu175-A | 8e-27 | ||
4e5n_A | 330 | Thermostable Phosphite Dehydrogenase In Complex Wit | 9e-27 | ||
4e5k_A | 329 | Thermostable Phosphite Dehydrogenase In Complex Wit | 9e-27 | ||
4dgs_A | 340 | The Crystals Structure Of Dehydrogenase From Rhizob | 1e-25 | ||
1ygy_A | 529 | Crystal Structure Of D-3-Phosphoglycerate Dehydroge | 2e-25 | ||
3ddn_A | 528 | Crystal Structure Of Hydroxypyruvic Acid Phosphate | 2e-25 | ||
2ekl_A | 313 | Structure Of St1218 Protein From Sulfolobus Tokodai | 5e-25 | ||
2g76_A | 335 | Crystal Structure Of Human 3-Phosphoglycerate Dehyd | 6e-25 | ||
4g2n_A | 345 | Crystal Structure Of Putative D-Isomer Specific 2-H | 3e-24 | ||
2gsd_A | 402 | Nad-dependent Formate Dehydrogenase From Bacterium | 3e-24 | ||
3fn4_A | 401 | Apo-form Of Nad-dependent Formate Dehydrogenase Fro | 4e-24 | ||
3n7u_A | 351 | Nad-Dependent Formate Dehydrogenase From Higher-Pla | 2e-23 | ||
3naq_A | 357 | Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro | 2e-23 | ||
2gug_A | 401 | Nad-dependent Formate Dehydrogenase From Pseudomona | 2e-23 | ||
2go1_A | 401 | Nad-Dependent Formate Dehydrogenase From Pseudomona | 3e-23 | ||
2nac_A | 393 | High Resolution Structures Of Holo And Apo Formate | 4e-23 | ||
2ome_A | 336 | Crystal Structure Of Human Ctbp2 Dehydrogenase Comp | 2e-21 | ||
1mx3_A | 347 | Crystal Structure Of Ctbp Dehydrogenase Core Holo F | 3e-21 | ||
1hku_A | 358 | CtbpBARS: A DUAL-Function Protein Involved In Trans | 3e-21 | ||
1hl3_A | 358 | CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK | 4e-21 | ||
3k5p_A | 416 | Crystal Structure Of Amino Acid-Binding Act: D-Isom | 4e-21 | ||
2p9g_A | 410 | Crystal Structure Of Serine Bound G336v,G337v Doubl | 8e-21 | ||
2p9c_A | 410 | Crystal Structure Of Serine Bound G336v Mutant Of E | 9e-21 | ||
3hg7_A | 324 | Crystal Structure Of D-Isomer Specific 2-Hydroxyaci | 1e-20 | ||
2j6i_A | 364 | Candida Boidinii Formate Dehydrogenase (Fdh) C-Term | 1e-20 | ||
2fss_A | 365 | Candida Boidinii Formate Dehydrogenase (Fdh) K47e M | 1e-20 | ||
3gg9_A | 352 | Crystal Structure Of Putative D-3-Phosphoglycerate | 2e-20 | ||
3ga0_A | 358 | Ctbp1BARS GLY172->glu Mutant Structure: Impairing N | 3e-20 | ||
1psd_A | 409 | The Allosteric Ligand Site In The Vmax-Type Coopera | 3e-20 | ||
3kb6_A | 334 | Crystal Structure Of D-lactate Dehydrogenase From A | 3e-19 | ||
1yba_A | 410 | The Active Form Of Phosphoglycerate Dehydrogenase L | 1e-18 | ||
3evt_A | 324 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 1e-18 | ||
1dxy_A | 333 | Structure Of D-2-Hydroxyisocaproate Dehydrogenase L | 5e-18 | ||
2yq4_A | 343 | Crystal Structure Of D-isomer Specific 2-hydroxyaci | 8e-18 | ||
1sc6_A | 404 | Crystal Structure Of W139g D-3-Phosphoglycerate Deh | 1e-17 | ||
4hy3_A | 365 | Crystal Structure Of A Phosphoglycerate Oxidoreduct | 1e-16 | ||
2w2k_A | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 3e-16 | ||
2w2l_D | 348 | Crystal Structure Of The Holo Forms Of Rhodotorula | 3e-16 | ||
2w2k_B | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 4e-16 | ||
1xdw_A | 331 | Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase | 1e-12 | ||
1j49_A | 333 | Insights Into Domain Closure, Substrate Specificity | 2e-10 | ||
2dld_A | 337 | D-Lactate Dehydrogenase Complexed With Nadh And Oxa | 4e-10 | ||
1j4a_A | 333 | Insights Into Domain Closure, Substrate Specificity | 2e-09 | ||
3gvx_A | 290 | Crystal Structure Of Glycerate Dehydrogenase Relate | 8e-08 | ||
3kbo_A | 315 | 2.14 Angstrom Crystal Structure Of Putative Oxidore | 5e-07 | ||
3oet_A | 381 | D-Erythronate-4-Phosphate Dehydrogenase Complexed W | 7e-07 | ||
1qp8_A | 303 | Crystal Structure Of A Putative Formate Dehydrogena | 1e-06 | ||
2o4c_A | 380 | Crystal Structure Of D-erythronate-4-phosphate Dehy | 1e-05 |
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330 | Back alignment and structure |
|
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328 | Back alignment and structure |
|
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307 | Back alignment and structure |
|
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334 | Back alignment and structure |
|
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334 | Back alignment and structure |
|
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311 | Back alignment and structure |
|
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333 | Back alignment and structure |
|
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333 | Back alignment and structure |
|
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332 | Back alignment and structure |
|
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329 | Back alignment and structure |
|
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320 | Back alignment and structure |
|
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334 | Back alignment and structure |
|
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330 | Back alignment and structure |
|
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329 | Back alignment and structure |
|
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340 | Back alignment and structure |
|
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529 | Back alignment and structure |
|
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528 | Back alignment and structure |
|
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313 | Back alignment and structure |
|
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335 | Back alignment and structure |
|
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345 | Back alignment and structure |
|
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402 | Back alignment and structure |
|
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401 | Back alignment and structure |
|
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351 | Back alignment and structure |
|
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357 | Back alignment and structure |
|
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401 | Back alignment and structure |
|
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401 | Back alignment and structure |
|
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393 | Back alignment and structure |
|
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336 | Back alignment and structure |
|
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347 | Back alignment and structure |
|
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358 | Back alignment and structure |
|
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358 | Back alignment and structure |
|
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416 | Back alignment and structure |
|
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324 | Back alignment and structure |
|
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364 | Back alignment and structure |
|
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365 | Back alignment and structure |
|
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352 | Back alignment and structure |
|
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358 | Back alignment and structure |
|
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409 | Back alignment and structure |
|
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334 | Back alignment and structure |
|
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324 | Back alignment and structure |
|
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333 | Back alignment and structure |
|
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343 | Back alignment and structure |
|
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404 | Back alignment and structure |
|
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365 | Back alignment and structure |
|
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348 | Back alignment and structure |
|
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348 | Back alignment and structure |
|
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348 | Back alignment and structure |
|
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331 | Back alignment and structure |
|
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337 | Back alignment and structure |
|
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
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>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290 | Back alignment and structure |
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>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315 | Back alignment and structure |
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>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381 | Back alignment and structure |
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>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303 | Back alignment and structure |
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>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380 | Back alignment and structure |
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Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
Query | 1128 | |||
2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 1e-100 | |
2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 2e-45 | |
2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 4e-43 | |
2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 2e-26 | |
2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 8e-09 | |
2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 2e-94 | |
2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 3e-41 | |
2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 6e-41 | |
2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 1e-23 | |
2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 1e-07 | |
2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 1e-93 | |
2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 7e-42 | |
2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 1e-40 | |
2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 2e-23 | |
2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 7e-08 | |
1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 3e-90 | |
1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 5e-42 | |
1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 5e-38 | |
1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 1e-25 | |
1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 4e-08 | |
4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 6e-88 | |
4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 7e-39 | |
4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 1e-38 | |
4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 9e-22 | |
4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 7e-08 | |
4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 2e-87 | |
4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 5e-41 | |
4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 4e-37 | |
4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 1e-24 | |
4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 1e-07 | |
1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 8e-84 | |
1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 1e-39 | |
1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 5e-26 | |
1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 7e-14 | |
1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 3e-07 | |
2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 3e-81 | |
2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 7e-36 | |
2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 1e-26 | |
2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 6e-15 | |
2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 2e-08 | |
3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 5e-79 | |
3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 2e-36 | |
3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 3e-23 | |
3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 2e-13 | |
3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 6e-07 | |
3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 8e-79 | |
3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 1e-36 | |
3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 2e-31 | |
3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 8e-20 | |
3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 1e-07 | |
2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 2e-78 | |
2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 1e-34 | |
2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 8e-32 | |
2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 3e-17 | |
2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 1e-06 | |
2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 1e-77 | |
2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 5e-33 | |
2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 1e-30 | |
2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 3e-16 | |
2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 2e-05 | |
4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 3e-77 | |
4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 4e-35 | |
4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 3e-30 | |
4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 2e-19 | |
4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 1e-07 | |
3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 2e-74 | |
3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 2e-35 | |
3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 6e-22 | |
3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 5e-11 | |
3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 1e-05 | |
1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 1e-73 | |
1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 8e-35 | |
1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 1e-26 | |
1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 1e-10 | |
1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 1e-06 | |
2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 8e-73 | |
2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 5e-33 | |
2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 3e-23 | |
2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 4e-14 | |
2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 8e-06 | |
3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 2e-72 | |
3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 6e-34 | |
3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 8e-22 | |
3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 7e-13 | |
3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 1e-07 | |
3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 2e-72 | |
3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 2e-36 | |
3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 5e-18 | |
3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 1e-07 | |
3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 2e-05 | |
1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 8e-69 | |
1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 6e-36 | |
1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 2e-21 | |
1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 3e-11 | |
1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 7e-05 | |
2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 1e-67 | |
2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 1e-34 | |
2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 1e-19 | |
2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 9e-11 | |
2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 2e-07 | |
1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 3e-67 | |
1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 4e-31 | |
1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 1e-21 | |
1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 2e-12 | |
1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 5e-05 | |
1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 3e-63 | |
1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 3e-29 | |
1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 8e-20 | |
1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 4e-12 | |
1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 2e-05 | |
2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 3e-62 | |
2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 2e-31 | |
2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 2e-16 | |
2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 8e-11 | |
2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 2e-04 | |
2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 7e-61 | |
2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 4e-32 | |
2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 1e-15 | |
2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 4e-09 | |
2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 5e-05 | |
1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 1e-60 | |
1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 1e-28 | |
1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 1e-19 | |
1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 1e-11 | |
1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 5e-05 | |
1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 2e-57 | |
1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 1e-28 | |
1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 2e-18 | |
1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 4e-10 | |
1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 1e-04 | |
3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 4e-57 | |
3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 2e-28 | |
3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 1e-13 | |
3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 4e-06 | |
3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 2e-04 | |
3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 1e-53 | |
3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 1e-27 | |
3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 6e-11 | |
3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 4e-04 | |
1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 2e-51 | |
1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 1e-27 | |
1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 5e-12 | |
1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 9e-09 | |
3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 4e-50 | |
3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 2e-26 | |
3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 3e-12 | |
3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 2e-09 | |
3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 3e-49 | |
3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 8e-26 | |
3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 2e-18 | |
3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 2e-12 | |
3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 5e-05 | |
2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 4e-49 | |
2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 3e-24 | |
2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 3e-18 | |
2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 3e-11 | |
2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 2e-05 | |
3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 3e-17 | |
3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 4e-05 | |
3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 1e-04 | |
3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 6e-04 | |
1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-13 | |
1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-11 | |
1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-04 | |
2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 4e-04 |
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
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Score = 318 bits (818), Expect = e-100 Identities = 116/257 (45%), Positives = 151/257 (58%), Gaps = 5/257 (1%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 NLKVI+T SVG DHL L EIK RGIRVG + +DT AE + L + RR E + Sbjct: 75 ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEE 134 Query: 934 ITSGEWALKQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992 + +G W + + G GL +TVGI+GLG IG A+ LK F V + LYT R+ + Sbjct: 135 VKNGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRP 191 Query: 993 EG-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 E A+ V L A+SDFI V C+LT TE L + F MK TA+ +N SRG ++ Sbjct: 192 EEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVV 251 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 +Q+ L + L KI AGLDV PEPLP +HPL+ L NCV+ PH SAT R+ S + Sbjct: 252 NQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLA 311 Query: 1112 AENIIRGYKGEPMIYEL 1128 A N++ G +GEPM EL Sbjct: 312 ANNLLAGLRGEPMPSEL 328 |
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
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Score = 166 bits (423), Expect = 2e-45 Identities = 76/233 (32%), Positives = 103/233 (44%), Gaps = 48/233 (20%) Query: 510 KIMSKPKLFLTRDDYSRVP--AFEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLC 566 + + K+F+TR R+P L D + S+ IP + G LLC Sbjct: 4 RPVRLMKVFVTR----RIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLC 59 Query: 567 TSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITT 626 D VDK++LD +G NLKVI+T Sbjct: 60 LLSDHVDKRILDAAG-------------------------------------ANLKVIST 82 Query: 627 FSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWAL 686 SVG DHL L EIK RGIRVG + +DT AE + L + RR E + + +G W Sbjct: 83 MSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTS 142 Query: 687 KQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 + + G GL +TVGI+GLG IG A+ LK F V + LYT R+ + E Sbjct: 143 WKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPE 192 |
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
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Score = 159 bits (404), Expect = 4e-43 Identities = 46/95 (48%), Positives = 58/95 (61%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 A+ V L A+SDFI V C+LT TE L + F MK TA+ IN SRG +++Q+ Sbjct: 196 EFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDD 255 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 L + L KI AGLDV PEPLP +HPL+ L NC Sbjct: 256 LYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290 |
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
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Score = 111 bits (279), Expect = 2e-26 Identities = 47/124 (37%), Positives = 65/124 (52%), Gaps = 3/124 (2%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 +R + E L + +++ + S+ +P + G LLC VDK +LD Sbjct: 14 TRRIPAEGRVALARAADCEVEQWD-SDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDA 72 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVG-TVGPVSSDTVAEYNIGLAIAVSRRFQQR 158 +G NLKVI+T SVG DHL LDEIK RGIRVG T V +DT AE + L + RR + Sbjct: 73 AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPD-VLTDTTAELAVSLLLTTCRRLPEA 131 Query: 159 HNWI 162 + Sbjct: 132 IEEV 135 |
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
---|
Score = 57.6 bits (140), Expect = 8e-09 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 812 NGEWALKQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866 NG W + + G GL +TVGI+GLG IG A+ LK F V + LYT R Sbjct: 137 NGGWTSWKPLWLCG---YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQP 189 |
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
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Score = 302 bits (776), Expect = 2e-94 Identities = 96/253 (37%), Positives = 142/253 (56%), Gaps = 10/253 (3%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 LKVI +SVG DH++L + RGIRV + ++ A+ + L +AV+RR EG Sbjct: 65 GLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYA 124 Query: 935 TSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 G W A ++G + L+G T+G+VG+G IG AK AF + +++Y +R K Sbjct: 125 RDGLWKAWHPELLLG---LDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKP- 179 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 L + L+ L E+D + + LT +T +L+ R++ MK AIL+NT+RG L+D Sbjct: 180 ---LPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAE 1113 EALVE L+ + GAGLDV PEPLP HPL L N V+TPH SA + R+ + + E Sbjct: 237 EALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295 Query: 1114 NIIRGYKGEPMIY 1126 N++ +G Sbjct: 296 NLLAVLEGREPPN 308 |
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
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Score = 153 bits (389), Expect = 3e-41 Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 50/227 (22%) Query: 516 KLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVD 573 ++ +TR +P A + L E + +P+ ++++ G L+ T DR+D Sbjct: 2 RVLVTR----TLPGKALDRLRERGLEVEVH-RGLFLPKAELLKRVEGAVGLIPTVEDRID 56 Query: 574 KQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDH 633 +V+D + K LKVI +SVG DH Sbjct: 57 AEVMDRA--------------------------------------KGLKVIACYSVGVDH 78 Query: 634 LELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTHII 692 ++L + RGIRV + ++ A+ + L +AV+RR EG G W A ++ Sbjct: 79 VDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLL 138 Query: 693 GPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 739 G + L+G T+G+VG+G IG AK AF + +++Y +R K Sbjct: 139 G---LDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKPLP 181 |
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
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Score = 152 bits (387), Expect = 6e-41 Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 1/94 (1%) Query: 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEAL 366 L + L+ L E+D + + LT +T +L+ R++ MK AIL+NT+RG L+D EAL Sbjct: 180 LPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEAL 239 Query: 367 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 VE L+ + GAGLDV PEPLP HPL L N Sbjct: 240 VEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272 |
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
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Score = 101 bits (255), Expect = 1e-23 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 +R L ++L +LR R +P+ +++++G L+ ++D EV+DR Sbjct: 6 TRTLPGKALDRLR--ERGLEVEVH-RGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 + LKVIA +SVG DH+ L+ + RGIRV V ++ A+ + L +AV+RR + Sbjct: 63 -AKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121 Query: 160 NWI 162 + Sbjct: 122 AYA 124 |
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
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Score = 54.1 bits (131), Expect = 1e-07 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%) Query: 812 NGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866 +G W A ++G + L+G T+G+VG+G IG AK AF + +++Y +R Sbjct: 126 DGLWKAWHPELLLG---LDLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTP 177 |
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
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Score = 301 bits (773), Expect = 1e-93 Identities = 98/257 (38%), Positives = 144/257 (56%), Gaps = 7/257 (2%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 L+++ ++VGYD++++ E RGI V + + +D A+ L +A +R +G + Sbjct: 66 PKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRF 125 Query: 934 ITSGEWALKQTHIIGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990 + SGEW + P + G T+GI+GLG IG AK K F + +ILY SR Sbjct: 126 VRSGEWKKRGV-AWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTR 183 Query: 991 KEEG-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 KEE L A+ PL+ L ESDF+ + LT++T LI ++ LMK TAIL+N +RG Sbjct: 184 KEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGK 243 Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109 ++D ALV+ LK+ I GAGLDV EP + L +LDN VLTPH SA+ R+ + Sbjct: 244 VVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREGMAE 302 Query: 1110 TSAENIIRGYKGEPMIY 1126 A+N+I +GE Sbjct: 303 LVAKNLIAFKRGEIPPT 319 |
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
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Score = 155 bits (395), Expect = 7e-42 Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 50/230 (21%) Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571 KPK+F+TR +P ++L + F++ + E +IPR+I ++K++ AL+ +R Sbjct: 2 KPKVFITR----EIPEVGIKMLEDEFEVEVWG-DEKEIPREILLKKVKEVDALVTMLSER 56 Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631 +DK+V + + L+++ ++VGY Sbjct: 57 IDKEVFENA--------------------------------------PKLRIVANYAVGY 78 Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691 D++++ E RGI V + + +D A+ L +A +R +G + + SGEW + Sbjct: 79 DNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGV-A 137 Query: 692 IGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 P + G T+GI+GLG IG AK K F + +ILY SR KEE Sbjct: 138 WHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKEE 186 |
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
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Score = 152 bits (387), Expect = 1e-40 Identities = 44/95 (46%), Positives = 59/95 (62%), Gaps = 1/95 (1%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 L A+ PL+ L ESDF+ + LT++T LI ++ LMK TAILIN +RG ++D A Sbjct: 190 ELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNA 249 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 LV+ LK+ I GAGLDV EP + L +LDN Sbjct: 250 LVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNV 283 |
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
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Score = 101 bits (255), Expect = 2e-23 Identities = 31/123 (25%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 +R + + L F+++ + E +PR+I ++K+K AL+ +++DKEV + Sbjct: 8 TREIPEVGIKMLE--DEFEVEVWG-DEKEIPREILLKKVKEVDALVTMLSERIDKEVFEN 64 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 L+++A ++VG+D++ ++E RGI V V +D A+ L +A +R + Sbjct: 65 -APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGD 123 Query: 160 NWI 162 ++ Sbjct: 124 RFV 126 |
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
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Score = 54.9 bits (133), Expect = 7e-08 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%) Query: 812 NGEWALKQTHIIGPNIM---GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866 +GEW + P + G T+GI+GLG IG AK K F + +ILY SR + Sbjct: 128 SGEWKKRGV-AWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTR 183 |
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
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Score = 292 bits (749), Expect = 3e-90 Identities = 81/259 (31%), Positives = 124/259 (47%), Gaps = 9/259 (3%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 EN+K I+T+S+G+DH++L KARGI+VG+ H + AE + L + +RR EG K Sbjct: 66 ENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKM 125 Query: 934 ITSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR--V 990 I + W + ++G L T+GI G G+IG AK + F + I Y Sbjct: 126 IRTRSWPGWEPLELVG---EKLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRAS 181 Query: 991 KEEGTALGA-QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 + + A LD+L + S F + T +T + + AI+VNT+RG Sbjct: 182 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD 241 Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109 L+D E +V L+ ++ AG DV EP + L N L PH SA R++ + Sbjct: 242 LVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAH 300 Query: 1110 TSAENIIRGYKGEPMIYEL 1128 + + I + G M Y L Sbjct: 301 QANDLIDALFGGADMSYAL 319 |
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
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Score = 155 bits (395), Expect = 5e-42 Identities = 61/229 (26%), Positives = 96/229 (41%), Gaps = 50/229 (21%) Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571 K K+ +T +P A E +D+I + + +I D IE + ALL T ++ Sbjct: 1 KKKILITW----PLPEAAMARARESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEK 55 Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631 K+V+D +N+K I+T+S+G+ Sbjct: 56 CRKEVIDRIP-------------------------------------ENIKCISTYSIGF 78 Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW-ALKQTH 690 DH++L KARGI+VG+ H + AE + L + +RR EG K I + W + Sbjct: 79 DHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLE 138 Query: 691 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR-RVKEE 738 ++G L T+GI G G+IG AK + F + I Y R Sbjct: 139 LVG---EKLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSS 183 |
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
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Score = 144 bits (365), Expect = 5e-38 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 306 ALGA-QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 + A LD+L + S F + T +T + + AI++NT+RG L+D E Sbjct: 187 SYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNE 246 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 +V L+ ++ AG DV EP + L N Sbjct: 247 LVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNT 281 |
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
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Score = 108 bits (272), Expect = 1e-25 Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 5/124 (4%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 + L ++++ R +D+ + + ++ D IE K ALL ++K KEV+DR Sbjct: 7 TWPLPEAAMARAR--ESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDR 63 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVG-TVGPVSSDTVAEYNIGLAIAVSRRFQQR 158 EN+K I+T+S+G DH+ LD K+RGI+VG + AE + L + +RR + Sbjct: 64 IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPH-GVTVATAEIAMLLLLGSARRAGEG 122 Query: 159 HNWI 162 I Sbjct: 123 EKMI 126 |
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
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Score = 55.6 bits (135), Expect = 4e-08 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 812 NGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTP 870 W + ++G L T+GI G G+IG AK + F + I Y ++ + Sbjct: 128 TRSWPGWEPLELVG---EKLDNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSS 183 Query: 871 KRTE 874 Sbjct: 184 DEAS 187 |
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
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Score = 286 bits (733), Expect = 6e-88 Identities = 80/263 (30%), Positives = 128/263 (48%), Gaps = 15/263 (5%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 L+VI G+D+ ++ ARG+ + V + + AE IGLA+ + R + Sbjct: 66 PELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF 125 Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 + SG++ P G L ATVG +G+G IGL A L+ + + + ++ + Sbjct: 126 VRSGKF-----RGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180 Query: 992 EEG-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 + LG + V L A SDFI + L DT L+ + +L++P A+LVN RG + Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNCVLTPHTSSATKAV 1103 +D+ A++ L+ ++GG DV E P D L+ N + TPH SA +AV Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300 Query: 1104 RDEKSSTSAENIIRGYKGEPMIY 1126 R E +A+NI++ GE I Sbjct: 301 RLEIERCAAQNILQALAGERPIN 323 |
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
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Score = 146 bits (372), Expect = 7e-39 Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 52/229 (22%) Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571 PKL +T RV ++L ++IT + R+ + + R A++ DR Sbjct: 2 LPKLVITH----RVHEEILQLLAPHCELITNQTDST-LTREEILRRCRDAQAMMAFMPDR 56 Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631 VD L L+VI G+ Sbjct: 57 VDADFLQAC--------------------------------------PELRVIGCALKGF 78 Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691 D+ ++ ARG+ + V + + AE IGLA+ + R + + SG++ Sbjct: 79 DNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKF-----RG 133 Query: 692 IGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 P G L ATVG +G+G IGL A L+ + + + ++ + + Sbjct: 134 WQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQ 182 |
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
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Score = 146 bits (370), Expect = 1e-38 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 7/102 (6%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 LG + V L A SDFI + L DT L+ + +L++P A+L+N RG ++D+ A Sbjct: 186 RLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAA 245 Query: 366 LVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNC 400 ++ L+ ++GG DV E P D L+ N Sbjct: 246 VLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNT 287 |
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
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Score = 96.9 bits (242), Expect = 9e-22 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 4/123 (3%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 + + E L L ++ T + R+ + + + A++ +VD + L Sbjct: 8 THRVHEEILQLLA--PHCELITNQTDST-LTREEILRRCRDAQAMMAFMPDRVDADFLQ- 63 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 + L+VI G D+ +D +RG+ + V + + AE IGLA+ + R + Sbjct: 64 ACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAAD 123 Query: 160 NWI 162 ++ Sbjct: 124 AFV 126 |
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
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Score = 54.5 bits (132), Expect = 7e-08 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK 868 +G++ P G L ATVG +G+G IGL A L+ + + Y + Sbjct: 128 SGKF-----RGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALD 180 |
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
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Score = 285 bits (731), Expect = 2e-87 Identities = 79/252 (31%), Positives = 118/252 (46%), Gaps = 7/252 (2%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 LK I T SVGYDH+++ ++ GI+V + SD AE + L + RR E + Sbjct: 93 PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRM 152 Query: 934 ITSGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR-RVK 991 + SG W T ++G MGL G +GI G+G IG A + F + I Y +R R+ Sbjct: 153 VRSGSWPGWGPTQLLG---MGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLS 208 Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 LD+L SD + + + + + + + A+++N SRG L+ Sbjct: 209 HALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLI 268 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 + +AL+E L+ K + AGLDV EP D LDN LTPH SAT RD Sbjct: 269 NDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLL 327 Query: 1112 AENIIRGYKGEP 1123 + I + + Sbjct: 328 IQGIEALNQSDV 339 |
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
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Score = 153 bits (390), Expect = 5e-41 Identities = 54/237 (22%), Positives = 85/237 (35%), Gaps = 49/237 (20%) Query: 505 FFHNFKIMSKPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCS 562 +F + K FL R R L + FD+ + + + G Sbjct: 19 YFQSMSTHPIQKAFLCR----RFTPAIEAELRQRFDLEVNL-EDTVLTPSGIASRAHGAE 73 Query: 563 ALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLK 622 L T+ + + +V+ + LK Sbjct: 74 VLFVTATEAITAEVIRKLQ-------------------------------------PGLK 96 Query: 623 VITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSG 682 I T SVGYDH+++ ++ GI+V + SD AE + L + RR E + + SG Sbjct: 97 TIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSG 156 Query: 683 EW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 W T ++G MGL G +GI G+G IG A + F + I Y +R Sbjct: 157 SWPGWGPTQLLG---MGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSH 209 |
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
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Score = 142 bits (360), Expect = 4e-37 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 LD+L SD + + + + + + + A++IN SRG L++ +A Sbjct: 213 EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDA 272 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 L+E L+ K + AGLDV EP D LDN Sbjct: 273 LIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNI 306 |
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
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Score = 105 bits (265), Expect = 1e-24 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 R P ++LR RFD++ + + + G L + + EV+ + Sbjct: 34 CRRFTPAIEAELR--QRFDLEVNL-EDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRK 90 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVG-TVGPVSSDTVAEYNIGLAIAVSRR 154 LK IAT SVG+DH+ + +S GI+V T V SD AE + L + RR Sbjct: 91 LQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPD-VLSDACAEIAMLLVLNACRR 145 |
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
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Score = 54.1 bits (131), Expect = 1e-07 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%) Query: 812 NGEW-ALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV 867 +G W T ++G MGL G +GI G+G IG A + F + I Y +R ++ Sbjct: 155 SGSWPGWGPTQLLG---MGLTGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRL 207 |
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
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Score = 273 bits (701), Expect = 8e-84 Identities = 60/252 (23%), Positives = 97/252 (38%), Gaps = 14/252 (5%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 LK I + G DHL I + V ++D VAE+ + L +A +R + + + Sbjct: 50 RLKFIQVVTAGLDHLPWESIPPH-VTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKM 108 Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 G++ I ++G V ++GLG IG K+L A ++ SR KE Sbjct: 109 KRGDYGRDVE------IPLIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEGP 161 Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 L+ E+ L K T L+ + +LM A+ VN R +LD++ Sbjct: 162 ---WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRD 218 Query: 1055 ALVEFLKDKKIGGAGLDVMI-PEPLPADHPLVQLDNCVLTPHTSSATKAVR--DEKSSTS 1111 ++ LK++ DV D L N V TP + R + + Sbjct: 219 GVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEA 278 Query: 1112 AENIIRGYKGEP 1123 N+I G Sbjct: 279 VRNLITYATGGR 290 |
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
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Score = 148 bits (375), Expect = 1e-39 Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 1/103 (0%) Query: 299 FERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 358 F R+ L+ E+ L K T L+ + +LM A+ +N R Sbjct: 153 FSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRA 212 Query: 359 GLLDQEALVEFLKDKKIGGAGLDVMI-PEPLPADHPLVQLDNC 400 +LD++ ++ LK++ DV D L N Sbjct: 213 EVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 255 |
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
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Score = 108 bits (273), Expect = 5e-26 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 8/121 (6%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 LK I + G DHL I + V ++D VAE+ + L +A +R + + Sbjct: 49 PRLKFIQVVTAGLDHLPWESIPPH-VTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEK 107 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 + G++ I ++G V ++GLG IG K+L A ++ SR KE Sbjct: 108 MKRGDYGRDVE------IPLIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEG 160 Query: 739 G 739 Sbjct: 161 P 161 |
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
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Score = 72.6 bits (179), Expect = 7e-14 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 2/102 (1%) Query: 63 PVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 P +E + + I + + ++ E L + LK I + G DHL + I Sbjct: 11 PEAEEELRKYFKIVRGGDLGNVEAALVSRITAEELAK-MPRLKFIQVVTAGLDHLPWESI 69 Query: 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIAR 164 + V ++D VAE+ + L +A +R Q + R Sbjct: 70 P-PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKR 110 |
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
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Score = 52.2 bits (126), Expect = 3e-07 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRT 873 ++G V ++GLG IG K+L A ++ SR + P R Sbjct: 122 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEGPWRF 164 |
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
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Score = 269 bits (691), Expect = 3e-81 Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 7/253 (2%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 +NLK+ T +G DH++L R + V V + +S +VAE+ + + +++ R + + Sbjct: 112 KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEW 171 Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 G W + L+ VG V G IGL + L F V + YT R E Sbjct: 172 ARKGGWNIADCVSHA---YDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPE 227 Query: 994 GTA--LGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 L + + D + + C L +TE +I + L K A +VNT+RG L Sbjct: 228 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKL 287 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 D++A+ L+ ++ G DV P+P P DHP + +TPH S T + ++ Sbjct: 288 CDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAG 347 Query: 1111 SAENIIRGYKGEP 1123 + E + ++G P Sbjct: 348 TREILECFFEGRP 360 |
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
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Score = 140 bits (354), Expect = 7e-36 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Query: 292 HYFGYNWFERSNGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350 HY + S L + + D + + C L +TE +I + L K A Sbjct: 218 HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGA 277 Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 ++NT+RG L D++A+ L+ ++ G DV P+P P DHP + Sbjct: 278 YIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPY 326 |
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
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Score = 112 bits (283), Expect = 1e-26 Identities = 38/196 (19%), Positives = 68/196 (34%), Gaps = 44/196 (22%) Query: 545 SEGQIPRDIFIEKLRGCSALLCTS--RDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPS 602 S+ P +F +L ++ + + + ++ Sbjct: 74 SDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA---------------------- 111 Query: 603 KRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNI 662 KNLK+ T +G DH++L R + V V + +S +VAE+ + Sbjct: 112 ----------------KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVV 155 Query: 663 GLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA 722 + +++ R + + G W + L+ VG V G IGL + L Sbjct: 156 MMILSLVRNYLPSHEWARKGGWNIADCVSHA---YDLEAMHVGTVAAGRIGLAVLRRLAP 212 Query: 723 FKVSKILYTSRRVKEE 738 F V + YT R E Sbjct: 213 FDV-HLHYTDRHRLPE 227 |
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
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Score = 77.3 bits (191), Expect = 6e-15 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 3/101 (2%) Query: 64 VSEGRMPRDIFIEKLKGCSALLCNPHQ--KVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 S+ P +F +L ++ P + E + + +NLK+ T +G DH+ L Sbjct: 73 TSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAK-AKNLKLALTAGIGSDHVDLQS 131 Query: 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWI 162 R + V V +S +VAE+ + + +++ R + H W Sbjct: 132 AIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWA 172 |
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
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Score = 56.9 bits (138), Expect = 2e-08 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 806 CYHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865 + G W + L+ VG V G IGL + L F V + YT R+ Sbjct: 168 SHEWARKGGWNIADCVSHA---YDLEAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRH 223 Query: 866 KVKTPKRTEN 875 + P+ E Sbjct: 224 --RLPESVEK 231 |
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
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Score = 261 bits (668), Expect = 5e-79 Identities = 69/271 (25%), Positives = 107/271 (39%), Gaps = 10/271 (3%) Query: 859 ILYTSRNKVKT--PKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYN 916 ++Y + +KT + T LK + S G D+L L ++A G+ V + I +D ++E Sbjct: 43 VMYGNHPLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESV 102 Query: 917 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLK 976 + ++V R + L G + I G G IG A Sbjct: 103 LAAMLSVVRGYHAAWLNQRGARQWALPMTT-----STLTGQQLLIYGTGQIGQSLAAKAS 157 Query: 977 AFKVSKILYTSRRVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 A + ++ + + A ++FI LT T L + F Sbjct: 158 ALGM-HVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQ 216 Query: 1036 MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPH 1095 K +L+N RG +D AL+ L ++ A LDV PEPLP DHPL Q D+ ++TPH Sbjct: 217 TKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPH 276 Query: 1096 TSSATKAVRDEKSSTSAENIIRGYK-GEPMI 1125 S R A N + K G + Sbjct: 277 ISGQIAHFRATVFPIFAANFAQFVKDGTLVR 307 |
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
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Score = 140 bits (354), Expect = 2e-36 Identities = 33/97 (34%), Positives = 42/97 (43%) Query: 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363 A ++FI LT T L + F K +LIN RG +D Sbjct: 175 HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234 Query: 364 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 AL+ L ++ A LDV PEPLP DHPL Q D+ Sbjct: 235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV 271 |
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
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Score = 100 bits (252), Expect = 3e-23 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 LK + S G D+L L ++A G+ V + I +D ++E + ++V R + Sbjct: 60 NQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLN 119 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 L G + I G G IG A A + ++ + Sbjct: 120 QRGARQWALPMT-----TSTLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGHPA 173 Query: 739 GQLFSLVYDFCR 750 F F Sbjct: 174 DH-FHETVAFTA 184 |
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
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Score = 71.9 bits (177), Expect = 2e-13 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 15/128 (11%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 ++ PE L +L+ TYP + + + N K +L R Sbjct: 7 AQATKPEQLQQLQ-------TTYPDWTFKDAAAVTAADYDQIEVMYGNHPL--LKTILAR 57 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF---- 155 LK + S G D+L L +++ G+ V + +D ++E + ++V R + Sbjct: 58 PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAW 117 Query: 156 --QQRHNW 161 Q+ Sbjct: 118 LNQRGARQ 125 |
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
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Score = 51.9 bits (125), Expect = 6e-07 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 11/65 (16%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHL 889 L G + I G G IG A A + ++ + T ++ F Sbjct: 135 LTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNT----TGHPADH------FHETVAFT 183 Query: 890 ELHEI 894 + Sbjct: 184 ATADA 188 |
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
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Score = 261 bits (668), Expect = 8e-79 Identities = 83/249 (33%), Positives = 123/249 (49%), Gaps = 8/249 (3%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 L+++++FSVG D ++L + + +G+RV + + +D VA+ IGL +AV RR E K + Sbjct: 87 KLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYV 146 Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 G W + G VGI+GLG IGL A+ +AF I Y SR K Sbjct: 147 RRGAWK-FGDFKLTTKF---SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKPNT 201 Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 + L + SD + V C LT +T +I R+ + P +L+N RG +D+ Sbjct: 202 NY--TYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEP 259 Query: 1055 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAEN 1114 LV L + ++GGAGLDV EP L L+N VL PH S T R + N Sbjct: 260 ELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVVGN 318 Query: 1115 IIRGYKGEP 1123 + + G+P Sbjct: 319 LEAHFSGKP 327 |
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
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Score = 140 bits (355), Expect = 1e-36 Identities = 53/229 (23%), Positives = 87/229 (37%), Gaps = 51/229 (22%) Query: 512 MSKPKLFLTRDDYSRVPAF--EILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSR 569 M + + + + + L + F + Y RD + A++ S Sbjct: 21 MEAIGVLMMC----PMSTYLEQELDKRFKLFRYW--TQPAQRDFLALQAESIRAVVGNSN 74 Query: 570 DRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSV 629 D +++D P L+++++FSV Sbjct: 75 AGADAELID--------------------ALP------------------KLEIVSSFSV 96 Query: 630 GYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQT 689 G D ++L + + +G+RV + + +D VA+ IGL +AV RR E K + G W Sbjct: 97 GLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FGD 155 Query: 690 HIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 + G VGI+GLG IGL A+ +AF I Y SR K Sbjct: 156 FKLTTKF---SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKKPN 200 |
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
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Score = 125 bits (316), Expect = 2e-31 Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 7/110 (6%) Query: 292 HYFGYNWFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350 YF RS + L + SD + V C LT +T +I R+ + P Sbjct: 191 SYFS-----RSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKG 245 Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 +LIN RG +D+ LV L + ++GGAGLDV EP L L+N Sbjct: 246 VLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENV 294 |
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
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Score = 91.1 bits (227), Expect = 8e-20 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Query: 52 RFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFS 111 + RF + + RD + + A++ N + D E++D L+++++FS Sbjct: 39 ELDKRFKL--FRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDA-LPKLEIVSSFS 95 Query: 112 VGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWI 162 VG D + L + + +G+RV V +D VA+ IGL +AV RR + ++ Sbjct: 96 VGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYV 146 |
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
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Score = 53.8 bits (130), Expect = 1e-07 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Query: 813 GEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV 867 G W + G VGI+GLG IGL A+ +AF I Y SR+K Sbjct: 149 GAWK-FGDFKLTTKF---SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRSKK 198 |
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
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Score = 259 bits (665), Expect = 2e-78 Identities = 88/288 (30%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 842 NIGLETAKLLKAFK-VSKILYTSRNKVKTPK---RTENLKVITTFSVGYDHLELHEIKAR 897 + +L I+ + K+ T + E LKVI+ S GYD+++L E R Sbjct: 28 ILYPSGEELKGVIGRFDGIIVSPTTKI-TREVLENAERLKVISCHSAGYDNIDLEEATKR 86 Query: 898 GIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQ-THIIGPNIMGLKG 956 GI V V + S+ VAE+ +GL I + R+ K I GEW I L G Sbjct: 87 GIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYG 146 Query: 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIF 1015 VGI+G+G IG A+ L F V K+ Y SR K L A+ + +D L +SD + Sbjct: 147 KKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVI 205 Query: 1016 VTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 + LT+DT +I ++ ++ LVN RG L+D++A+ E +K K+ G DV Sbjct: 206 LALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEK 264 Query: 1076 EPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 EP+ VLTPH + +++ + EN+++ +GE Sbjct: 265 EPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEV 312 |
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
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Score = 134 bits (340), Expect = 1e-34 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 L A+ + +D L +SD + + LT+DT +I ++ ++ L+N RG L+D++A Sbjct: 186 ELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGALVDEKA 244 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 + E +K K+ G DV EP+ Sbjct: 245 VTEAIKQGKLKGYATDVFEKEPVREHELFKYEWE 278 |
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
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Score = 126 bits (319), Expect = 8e-32 Identities = 55/228 (24%), Positives = 88/228 (38%), Gaps = 50/228 (21%) Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571 +PK+ + ++ A E L + D+ + + ++ + + Sbjct: 2 RPKVGVLL----KMKREALEELKKYADVEIIL----YPSGEELKGVIGRFDGIIVSPTTK 53 Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631 + ++VL+ + + LKVI+ S GY Sbjct: 54 ITREVLENA--------------------------------------ERLKVISCHSAGY 75 Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQ-TH 690 D+++L E RGI V V + S+ VAE+ +GL I + R+ K I GEW Sbjct: 76 DNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIW 135 Query: 691 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 I L G VGI+G+G IG A+ L F V K+ Y SR K Sbjct: 136 TGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKVN 182 |
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
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Score = 83.4 bits (207), Expect = 3e-17 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 7/123 (5%) Query: 40 SRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 + E+L +L+ D++ + + ++ +P K+ +EVL+ Sbjct: 8 LLKMKREALEELK--KYADVEIIL----YPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61 Query: 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 E LKVI+ S G+D++ L+E RGI V V + S+ VAE+ +GL I + R+ Sbjct: 62 -AERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120 Query: 160 NWI 162 +I Sbjct: 121 KFI 123 |
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
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Score = 51.0 bits (123), Expect = 1e-06 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 812 NGEWALKQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTP 870 GEW I L G VGI+G+G IG A+ L F V K+ Y SR+ + Sbjct: 125 RGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRH--RKV 181 Query: 871 KRTENLKV 878 + LK Sbjct: 182 NVEKELKA 189 |
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
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Score = 258 bits (661), Expect = 1e-77 Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 8/255 (3%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 +LKV G+D L+L + RG+ + ++ + L ++V R + Sbjct: 79 SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA 138 Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAK-LLKAFKVSKILYTSRRV 990 +G+ + +G +G VGLG I E A+ + + K++Y Sbjct: 139 ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAP 197 Query: 991 K--EEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 E ALGA+ V L+ L SD + V+ K T LI F+ MKP + +VNT+R Sbjct: 198 ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257 Query: 1048 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEK 1107 G ++ Q+AL+ LK K+ AGLDV EP L+++ + LT H E Sbjct: 258 GPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEF 316 Query: 1108 SSTSAENIIRGYKGE 1122 + NI R Sbjct: 317 ERLTMTNIDRFLLQG 331 |
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
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Score = 130 bits (329), Expect = 5e-33 Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 2/96 (2%) Query: 306 ALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 ALGA+ V L+ L SD + V+ K T LI F+ MKP + ++NT+RG ++ Q+ Sbjct: 205 ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQD 264 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 AL+ LK K+ AGLDV EP L+++ + Sbjct: 265 ALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHV 299 |
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
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Score = 123 bits (311), Expect = 1e-30 Identities = 36/242 (14%), Positives = 74/242 (30%), Gaps = 57/242 (23%) Query: 512 MSKPKLFLTRDDYSRVP-AFEILGEMFDIITYPASEGQIPRDIFIEKLR-----GCSALL 565 M +P++ L D + + + F++I + D F + LR A++ Sbjct: 1 MPRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTT----HDGFKQALREKRYGDFEAII 56 Query: 566 C------TSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIK 619 T + ++ Sbjct: 57 KLAVENGTESYPWNADLISHLP-------------------------------------S 79 Query: 620 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 679 +LKV G+D L+L + RG+ + ++ + L ++V R + Sbjct: 80 SLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAA 139 Query: 680 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAK-LLKAFKVSKILYTSRRVK 736 +G+ + +G +G VGLG I E A+ + + K++Y Sbjct: 140 RTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPA 198 Query: 737 EE 738 + Sbjct: 199 DA 200 |
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
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Score = 80.8 bits (200), Expect = 3e-16 Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 15/122 (12%) Query: 52 RFNSRFDIDTYPVSEGRMPRDIFIEKLK-----GCSALLCNPHQ------KVDKEVLDRS 100 F +F++ D F + L+ A++ + + +++ Sbjct: 22 DFQQKFEVIPAN----LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL 77 Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160 +LKV A G D L LD + RG+ ++ + L ++V R Sbjct: 78 PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSER 137 Query: 161 WI 162 Sbjct: 138 AA 139 |
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
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Score = 47.3 bits (113), Expect = 2e-05 Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 4/58 (6%) Query: 813 GEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAK-LLKAFKVSKILYTSRNKV 867 G+ + +G +G VGLG I E A+ + + K++Y Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPA 198 |
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
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Score = 256 bits (657), Expect = 3e-77 Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 7/249 (2%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 +L +I VG D ++L + R I V + + +D VA+ I L +AV RR +G + + Sbjct: 93 SLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLV 152 Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 G WA + +G + KG +G++GLG IG A +AF + + Y +R Sbjct: 153 REGRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLSGV 208 Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 L +SD + V A + T+ ++ + P I+VN +RG ++D++ Sbjct: 209 DW--IAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDED 266 Query: 1055 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAEN 1114 AL+E LK I GAGLDV + EP N VL PH SAT R N Sbjct: 267 ALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMGKLVLAN 325 Query: 1115 IIRGYKGEP 1123 + + GE Sbjct: 326 LAAHFAGEK 334 |
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
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Score = 136 bits (345), Expect = 4e-35 Identities = 46/238 (19%), Positives = 82/238 (34%), Gaps = 53/238 (22%) Query: 505 FFHNFKIMS--KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRG 560 +F + KP L L + + L + + + R L Sbjct: 19 YFQSMLEFRNVKPDLLLVE----PMMPFVMDELQRNYSVHRLYQAA---DRPALEAALPS 71 Query: 561 CSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKN 620 A+ + + ++ + P + Sbjct: 72 IRAVATGGGAGLSNEWME--------------------KLP------------------S 93 Query: 621 LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCIT 680 L +I VG D ++L + R I V + + +D VA+ I L +AV RR +G + + Sbjct: 94 LGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVR 153 Query: 681 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 G WA + +G + KG +G++GLG IG A +AF + + Y +R Sbjct: 154 EGRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLSG 207 |
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
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Score = 122 bits (308), Expect = 3e-30 Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 7/110 (6%) Query: 292 HYFGYNWFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350 Y+ RS + + L +SD + V A + T+ ++ + P Sbjct: 198 RYWN-----RSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEG 252 Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 I++N +RG ++D++AL+E LK I GAGLDV + EP N Sbjct: 253 IVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNT 301 |
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
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Score = 90.0 bits (224), Expect = 2e-19 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 41 RLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRS 100 ++P + +L+ + + R L A+ + E +++ Sbjct: 37 EPMMPFVMDELQ--RNYSVHRLY---QAADRPALEAALPSIRAVATGGGAGLSNEWMEK- 90 Query: 101 GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160 +L +IA VG D + L + R I V T V +D VA+ I L +AV RR Sbjct: 91 LPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDR 150 Query: 161 WI 162 + Sbjct: 151 LV 152 |
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
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Score = 54.2 bits (131), Expect = 1e-07 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Query: 813 GEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV 867 G WA + +G + KG +G++GLG IG A +AF + + Y +R+ + Sbjct: 155 GRWAAGEQLPLGHSP---KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTL 205 |
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
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Score = 247 bits (632), Expect = 2e-74 Identities = 58/251 (23%), Positives = 111/251 (44%), Gaps = 15/251 (5%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 + K+I S G DH++++ I + + G S +VAE+ L +A ++ E + Sbjct: 48 KRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAKNILENNEL 106 Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 + +G + T L G +GI+G G IG A L KAF + +++ +R ++ Sbjct: 107 MKAGIFRQSPT-------TLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQ 158 Query: 994 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 + L +SDF+ + LT T ++ + + + +VN +R ++ + Sbjct: 159 --NVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSK 216 Query: 1054 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATK-AVRDEKSSTSA 1112 ++ FLK++ DV EP + L N +L+PH + + D + Sbjct: 217 PDMIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAGGMSGEIMDIAIQLAF 273 Query: 1113 ENIIRGYKGEP 1123 EN+ ++GE Sbjct: 274 ENVRNFFEGEG 284 |
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
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Score = 135 bits (343), Expect = 2e-35 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 + L +SDF+ + LT T ++ + + + ++N +R ++ + Sbjct: 159 NVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPD 218 Query: 366 LVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 ++ FLK++ DV EP + L N Sbjct: 219 MIGFLKERSDVWYLSDVWWNEPEITETN---LRNA 250 |
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
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Score = 96.5 bits (241), Expect = 6e-22 Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 K K+I S G DH++++ I + + G S +VAE+ L +A ++ E + Sbjct: 48 KRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAKNILENNEL 106 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 + +G + T L G +GI+G G IG A L KAF + +++ +R ++ Sbjct: 107 MKAGIFRQSPT-------TLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQ 158 |
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
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Score = 64.1 bits (157), Expect = 5e-11 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 91 KVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIA 150 +V K+ G+ K+I S G DH+ ++ I + S +VAE+ L +A Sbjct: 38 QVIKDRYVL-GKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLA 95 Query: 151 VSRRFQQRHNWI 162 ++ + + + Sbjct: 96 HAKNILENNELM 107 |
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
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Score = 47.6 bits (114), Expect = 1e-05 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 864 L G +GI+G G IG A L KAF + +++ +R Sbjct: 120 LYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTR 153 |
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
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Score = 247 bits (632), Expect = 1e-73 Identities = 74/255 (29%), Positives = 116/255 (45%), Gaps = 6/255 (2%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 + L++I G+D++++ GI V +V S + A+ + + + RR + Sbjct: 84 KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA 143 Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 + G I ++G T+GI+GLG +G A KAF +L+ + Sbjct: 144 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLS 202 Query: 992 EE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 + ALG Q V L L SD + + C L + LI M+ A LVNT+RGG Sbjct: 203 DGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGG 262 Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNCVLTPHTSSATKAVRDEKS 1108 L+D++AL + LK+ +I GA LDV EP + PL N + TPH + ++ E Sbjct: 263 LVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMR 322 Query: 1109 STSAENIIRGYKGEP 1123 +A I R G Sbjct: 323 EEAAREIRRAITGRI 337 |
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
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Score = 135 bits (343), Expect = 8e-35 Identities = 38/97 (39%), Positives = 51/97 (52%), Gaps = 2/97 (2%) Query: 306 ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 ALG Q V L L SD + + C L + LI M+ A L+NT+RGGL+D++ Sbjct: 208 ALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEK 267 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQLDNC 400 AL + LK+ +I GA LDV EP + PL N Sbjct: 268 ALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL 304 |
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
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Score = 111 bits (280), Expect = 1e-26 Identities = 38/229 (16%), Positives = 74/229 (32%), Gaps = 45/229 (19%) Query: 512 MSKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571 P + L D IL ++ + Q ++I + L L Sbjct: 19 SHMPLVALL-DGRDCTVEMPILKDVATVAFCD---AQSTQEIHEKVLNEAVGALMYHTIT 74 Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631 + ++ L++ K L++I G+ Sbjct: 75 LTREDLEKF--------------------------------------KALRIIVRIGSGF 96 Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691 D++++ GI V +V S + A+ + + + RR + + G I Sbjct: 97 DNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQI 156 Query: 692 IGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 ++G T+GI+GLG +G A KAF +L+ + + Sbjct: 157 REVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG 204 |
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
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Score = 63.4 bits (155), Expect = 1e-10 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 4/108 (3%) Query: 53 FNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSV 112 + + ++I + L L + +E L++ + L++I Sbjct: 39 LKDVATVAFCD---AQSTQEIHEKVLNEAVGALMYHTITLTREDLEK-FKALRIIVRIGS 94 Query: 113 GHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHN 160 G D++ + GI V V S + A+ + + + RR H Sbjct: 95 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQ 142 |
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
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Score = 51.1 bits (123), Expect = 1e-06 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 G I ++G T+GI+GLG +G A KAF +L+ Sbjct: 146 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGF-NVLF 196 |
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
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Score = 243 bits (623), Expect = 2e-72 Identities = 75/253 (29%), Positives = 125/253 (49%), Gaps = 7/253 (2%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 +NLK++ T +G DH++L A G+ V V + +VAE + + + R F G Sbjct: 85 KNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQ 144 Query: 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--K 991 + GEW + L+G T+G VG G IG + LK F +LY R Sbjct: 145 VVKGEWNVAGIAYRA---YDLEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAP 200 Query: 992 EEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 E GA+ V L+ + + D I + LT+ T + ++ +K ++VN +RG + Sbjct: 201 ELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAI 260 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 ++++A+V+ ++ IGG DV P+P P DHP + N +TPHTS T + ++ Sbjct: 261 MERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAG 320 Query: 1111 SAENIIRGYKGEP 1123 + + + R +KGE Sbjct: 321 TKDMLERYFKGED 333 |
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
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Score = 133 bits (336), Expect = 6e-34 Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 306 ALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 GA+ V L+ + + D I + LT+ T + ++ +K +++N +RG +++++ Sbjct: 205 ETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQ 264 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 A+V+ ++ IGG DV P+P P DHP + N Sbjct: 265 AVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPN 299 |
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
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Score = 97.7 bits (244), Expect = 8e-22 Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 47/205 (22%) Query: 537 FDIITYPASEGQIPRDIFIEKLRGCSALLCTS--RDRVDKQVLDESGGYRCTEDFFGLDL 594 I EG P + + L+ T V + + ++ Sbjct: 41 HQYIVTDDKEG--PDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-------------- 84 Query: 595 DQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISS 654 KNLK++ T +G DH++L A G+ V V + Sbjct: 85 ------------------------KNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNV 120 Query: 655 DTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGL 714 +VAE + + + R F G + GEW + L+G T+G VG G IG Sbjct: 121 VSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRA---YDLEGKTIGTVGAGRIGK 177 Query: 715 ETAKLLKAFKVSKILYTSR-RVKEE 738 + LK F +LY R ++ E Sbjct: 178 LLLQRLKPFGC-NLLYHDRLQMAPE 201 |
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
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Score = 70.4 bits (173), Expect = 7e-13 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%) Query: 57 FDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQ--KVDKEVLDRSGENLKVIATFSVGH 114 EG P + + L+ P V E + + +NLK++ T +G Sbjct: 41 HQYIVTDDKEG--PDCELEKHIPDLHVLISTPFHPAYVTAERIKK-AKNLKLLLTAGIGS 97 Query: 115 DHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWI 162 DH+ L + G+ V V + +VAE + + + R F +N + Sbjct: 98 DHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQV 145 |
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
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Score = 54.2 bits (131), Expect = 1e-07 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866 Y+ + GEW + L+G T+G VG G IG + LK F +LY R + Sbjct: 142 YNQVVKGEWNVAGIAYRA---YDLEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQ 197 Query: 867 VKTPKRTENLKV 878 + P+ + Sbjct: 198 M-APELEKETGA 208 |
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
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Score = 243 bits (623), Expect = 2e-72 Identities = 79/295 (26%), Positives = 127/295 (43%), Gaps = 17/295 (5%) Query: 844 GLETAKLLKAFKVSKILYTSRNKVKTPK----RTENLKVITTFSV----GYDHLELHEIK 895 +L + L R + + + R LK+I+ H++L Sbjct: 36 VKGVGQLAARVADVEALVLIRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACT 95 Query: 896 ARGIRV-GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW---ALKQTHIIGPNI 951 +G+ V G S AE L +A RR + + G W LK T + Sbjct: 96 DKGVVVLEGKG--SPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFG 153 Query: 952 MG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVP-LDTLC 1008 +G LKG T+GI G G IG A +AF ++ +++ KE A G + D L Sbjct: 154 IGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALF 213 Query: 1009 AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 +SD + V L +T +I + MKPTA+ VNTSR L+++ +V L + G A Sbjct: 214 EQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMA 273 Query: 1069 GLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 +DV EP+ H L++++NC+ TPH + + + +NI+ +G Sbjct: 274 AIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNV 328 |
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
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Score = 140 bits (355), Expect = 2e-36 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 306 ALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 A G + D L +SD + V L +T +I + MKPTA+ +NTSR L+++ Sbjct: 200 ADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEEN 259 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 +V L + G A +DV EP+ H L++++NC Sbjct: 260 GMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENC 295 |
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
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Score = 85.8 bits (213), Expect = 5e-18 Identities = 50/231 (21%), Positives = 75/231 (32%), Gaps = 57/231 (24%) Query: 522 DDYSRVP---AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLC-TSRDRVDKQVL 577 DDY L + ++ + ++ AL+ R RV +Q+L Sbjct: 9 DDYQDAVRKLDCFSLLQDHEVKVFN--NTVKGVGQLAARVADVEALVLIRERTRVTRQLL 66 Query: 578 DESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSV----GYDH 633 D R LK+I+ H Sbjct: 67 D-----RL---------------------------------PKLKIISQTGRVSRDAGGH 88 Query: 634 LELHEIKARGIRV-GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW---ALKQT 689 ++L +G+ V G S AE L +A RR + + G W LK T Sbjct: 89 IDLEACTDKGVVVLEGKG--SPVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKST 146 Query: 690 HIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 + +G LKG T+GI G G IG A +AF + +L R +E Sbjct: 147 TMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGRENSKE 196 |
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
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Score = 53.8 bits (130), Expect = 1e-07 Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 9/120 (7%) Query: 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQ-KVDKEVLDRSG 101 L ++ + ++ AL+ + +V +++LDR Sbjct: 13 DAVRKLDCFSLLQDHEVKVFN--NTVKGVGQLAARVADVEALVLIRERTRVTRQLLDR-L 69 Query: 102 ENLKVIATFSV----GHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 LK+I+ H+ L+ +G+ V G S AE L +A RR Q Sbjct: 70 PKLKIISQTGRVSRDAGGHIDLEACTDKGVVV-LEGKGSPVAPAELTWALVMAAQRRIPQ 128 |
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
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Score = 47.2 bits (113), Expect = 2e-05 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Query: 812 NGEW---ALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNK 866 +G W LK T + +G LKG T+GI G G IG A +AF + +L R Sbjct: 135 HGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGRE- 192 Query: 867 VKTPKRTENLKV 878 + +R Sbjct: 193 -NSKERARADGF 203 |
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
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Score = 232 bits (594), Expect = 8e-69 Identities = 98/251 (39%), Positives = 139/251 (55%), Gaps = 11/251 (4%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 LKVI VG D++++ K +GI V + SS +VAE +GL +V+R+ + Sbjct: 65 PKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRK 124 Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 + G WA K+ MG L+G T+GI+G G IG + AK+ A + IL Sbjct: 125 MREGVWAKKE-------AMGIELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPN 176 Query: 992 EE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 EE + + V L+TL ESD + + L + T LI ++ LMK TAIL+NTSRG + Sbjct: 177 EERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPV 236 Query: 1051 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 +D ALV+ LK+ I GAGLDV EPLP DHPL + DN VLTPH ++T ++ Sbjct: 237 VDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVE 296 Query: 1111 SAENIIRGYKG 1121 AE +++ KG Sbjct: 297 VAEKVVKILKG 307 |
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
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Score = 138 bits (349), Expect = 6e-36 Identities = 47/95 (49%), Positives = 60/95 (63%) Query: 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 + + V L+TL ESD + + L + T LI ++ LMK TAILINTSRG ++D Sbjct: 181 KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 ALV+ LK+ I GAGLDV EPLP DHPL + DN Sbjct: 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDN 275 |
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
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Score = 95.3 bits (238), Expect = 2e-21 Identities = 53/230 (23%), Positives = 93/230 (40%), Gaps = 55/230 (23%) Query: 512 MSKPKLFLTRDDYSRVPAFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRD 570 M + K+ + A ++L + ++I D +E ++ A++ S+ Sbjct: 1 MKRMKVLVA-APLHEK-AIQVLKDAGLEVIYEE----YPDEDRLVELVKDVEAIIVRSKP 54 Query: 571 RVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVG 630 +V ++V++ + LKVI VG Sbjct: 55 KVTRRVIESA--------------------------------------PKLKVIARAGVG 76 Query: 631 YDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 690 D++++ K +GI V + SS +VAE +GL +V+R+ + + G WA K+ Sbjct: 77 LDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKE-- 134 Query: 691 IIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 MG L+G T+GI+G G IG + AK+ A + IL EE Sbjct: 135 -----AMGIELEGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNEE 178 |
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
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Score = 64.9 bits (159), Expect = 3e-11 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 11/125 (8%) Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95 ++LV L + L+ ++ ++ D +E +K A++ KV + Sbjct: 5 KVLVAAPLHEKAIQVLK-DAGLEVIYEEY----PDEDRLVELVKDVEAIIVRSKPKVTRR 59 Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155 V++ S LKVIA VG D++ ++ K +GI V SS +VAE +GL +V+R+ Sbjct: 60 VIE-SAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKI 118 Query: 156 QQRHN 160 Sbjct: 119 AFADR 123 |
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
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Score = 45.2 bits (108), Expect = 7e-05 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 10/52 (19%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 G WA K+ MG L+G T+GI+G G IG + AK+ A + IL Sbjct: 127 EGVWAKKE-------AMGIELEGKTIGIIGFGRIGYQVAKIANALGM-NILL 170 |
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
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Score = 231 bits (590), Expect = 1e-67 Identities = 69/260 (26%), Positives = 118/260 (45%), Gaps = 13/260 (5%) Query: 874 ENLKVITTFSVGYDHLELHEIKARG--IRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGR 931 + LK++ VG DH++L I G I V V + +VAE+ + + + R F Sbjct: 83 KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAH 142 Query: 932 KCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV- 990 + I + +W + ++G T+ +G G IG + L F ++LY + Sbjct: 143 EQIINHDWEVAAIAKDA---YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQAL 199 Query: 991 -KEEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 K+ +GA+ V ++ L A++D + V L T+ LI ++ S K A LVNT+RG Sbjct: 200 PKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARG 259 Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN-----CVLTPHTSSATKAV 1103 + E + L+ ++ G G DV P+P P DHP + N +TPH S T Sbjct: 260 AICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDA 319 Query: 1104 RDEKSSTSAENIIRGYKGEP 1123 + + + + + G+ Sbjct: 320 QTRYAQGTVNILESFFTGKF 339 |
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
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Score = 135 bits (343), Expect = 1e-34 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%) Query: 292 HYFGYNWFERSNGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 350 Y+ Y + +GA+ V ++ L A++D + V L T+ LI ++ S K A Sbjct: 192 LYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGA 251 Query: 351 ILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIP 410 L+NT+RG + E + L+ ++ G G DV P+P P DHP + N GAG + M P Sbjct: 252 WLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAG-NAMTP 310 |
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
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Score = 91.2 bits (227), Expect = 1e-19 Identities = 37/198 (18%), Positives = 70/198 (35%), Gaps = 47/198 (23%) Query: 537 FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRD--RVDKQVLDESGGYRCTEDFFGLDL 594 ++IT EG + + + ++ T + K+ +D++ Sbjct: 39 HELITTSDKEG--GNSVLDQHIPDADIIITTPFHPAYITKERIDKA-------------- 82 Query: 595 DQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARG--IRVGSVGHI 652 K LK++ VG DH++L I G I V V Sbjct: 83 ------------------------KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGS 118 Query: 653 SSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNI 712 + +VAE+ + + + R F + I + +W + ++G T+ +G G I Sbjct: 119 NVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDA---YDIEGKTIATIGAGRI 175 Query: 713 GLETAKLLKAFKVSKILY 730 G + L F ++LY Sbjct: 176 GYRVLERLVPFNPKELLY 193 |
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
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Score = 63.9 bits (156), Expect = 9e-11 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 7/110 (6%) Query: 57 FDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQ--KVDKEVLDRSGENLKVIATFSVGH 114 ++ T EG + + + ++ P + KE +D+ + LK++ VG Sbjct: 39 HELITTSDKEG--GNSVLDQHIPDADIIITTPFHPAYITKERIDK-AKKLKLVVVAGVGS 95 Query: 115 DHLHLDEIKSRG--IRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWI 162 DH+ LD I G I V V + +VAE+ + + + R F H I Sbjct: 96 DHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQI 145 |
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
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Score = 53.5 bits (129), Expect = 2e-07 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%) Query: 806 CYHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRN 865 + IN +W + ++G T+ +G G IG + L F ++LY Sbjct: 141 AHEQIINHDWEVAAIAKDA---YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ 197 Query: 866 KVKTPKRTENLKV 878 + E + Sbjct: 198 AL-PKDAEEKVGA 209 |
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
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Score = 228 bits (584), Expect = 3e-67 Identities = 56/262 (21%), Positives = 110/262 (41%), Gaps = 19/262 (7%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 + ++ +VG D++++ + K G ++ +V S + +AE+ A + R+ + + + Sbjct: 70 GITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKV 129 Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 + IG + VG+VG G+IG ++++ F +K++ E Sbjct: 130 ARHDLRWAP--TIGREVRDQ---VVGVVGTGHIGQVFMQIMEGFG-AKVITYDIFRNPEL 183 Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 G + LD L ++D I + +I + + MK ++VN SRG L+D + Sbjct: 184 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD 243 Query: 1055 ALVEFLKDKKIGGAGLDVMIPE-------------PLPADHPLVQLDNCVLTPHTSSATK 1101 A++ L KI G +DV E P L+ N ++TP T+ T Sbjct: 244 AVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTT 303 Query: 1102 AVRDEKSSTSAENIIRGYKGEP 1123 + +N + +G+ Sbjct: 304 HAVRNMVVKAFDNNLELVEGKE 325 |
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
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Score = 124 bits (314), Expect = 4e-31 Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 295 GYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILIN 354 Y+ F G + LD L ++D I + +I + + MK +++N Sbjct: 174 TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVN 233 Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE-------------PLPADHPLVQLDN 399 SRG L+D +A++ L KI G +DV E P L+ N Sbjct: 234 VSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPN 291 |
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
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Score = 96.9 bits (242), Expect = 1e-21 Identities = 30/227 (13%), Positives = 77/227 (33%), Gaps = 45/227 (19%) Query: 512 MSKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571 M+K + R+D P + + + ++ + + + +G ++ + Sbjct: 1 MTKIFAYAIRED--EKPFLKEWEDAHKDVEVEYTDKLLTPET-VALAKGADGVVVYQQLD 57 Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631 + L + ++ +VG Sbjct: 58 YIAETLQALADN------------------------------------GITKMSLRNVGV 81 Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691 D++++ + K G ++ +V S + +AE+ A + R+ + + + + Sbjct: 82 DNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAP--T 139 Query: 692 IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 IG + VG+VG G+IG ++++ F +K++ E Sbjct: 140 IGREVRDQ---VVGVVGTGHIGQVFMQIMEGFG-AKVITYDIFRNPE 182 |
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
---|
Score = 69.2 bits (170), Expect = 2e-12 Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 9/101 (8%) Query: 75 IEKLKGCSALLCNPHQKVDKEVLDR-SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 + KG ++ E L + + ++ +VG D++ + + K G ++ V Sbjct: 41 VALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVP 100 Query: 134 PVSSDTVAEYNIGLAIAVSRRFQQ------RHNWIARLSSF 168 S + +AE+ A + R+ + RH+ R + Sbjct: 101 VYSPNAIAEHAAIQAARILRQDKAMDEKVARHDL--RWAPT 139 |
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
---|
Score = 46.1 bits (110), Expect = 5e-05 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%) Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 854 + IG + VG+VG G+IG ++++ F Sbjct: 126 DEKVARHDLRWAP--TIGREVRDQ---VVGVVGTGHIGQVFMQIMEGF 168 |
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
---|
Score = 217 bits (555), Expect = 3e-63 Identities = 68/269 (25%), Positives = 119/269 (44%), Gaps = 23/269 (8%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 +K +T +VG D++++ +K GIR+ +V S +AE+ + + + R + + + Sbjct: 68 GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQL 127 Query: 935 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992 +G++ +G L TVG++G G+IG KL K F I Y Sbjct: 128 QAGDYEKA------GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYD--PYPM 179 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 +G V L+ L +SD I + + +I F+LMKP AI++NT+R L+D Sbjct: 180 KGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLID 239 Query: 1053 QEALVEFLKDKKIGGAGLDVMIPEPL-------------PADHPLVQLDNCVLTPHTSSA 1099 +A++ LK K+ G G+D E P L+ + N VL+PH + Sbjct: 240 TQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 299 Query: 1100 TKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 T+ S ++++ E+ Sbjct: 300 TETAVHNMVYFSLQHLVDFLTKGETSTEV 328 |
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
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Score = 118 bits (299), Expect = 3e-29 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 13/107 (12%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 V L+ L +SD I + + +I F+LMKP AI+INT+R L+D +A Sbjct: 183 HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQA 242 Query: 366 LVEFLKDKKIGGAGLDVMIPEPL-------------PADHPLVQLDN 399 ++ LK K+ G G+D E P L+ + N Sbjct: 243 MLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPN 289 |
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
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Score = 91.1 bits (227), Expect = 8e-20 Identities = 38/219 (17%), Positives = 78/219 (35%), Gaps = 51/219 (23%) Query: 514 KPKLFLTRDDYSRVPAFEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572 K + R D + F+ + + Y + + +E +G + Sbjct: 2 KIIAYGARVD--EIQYFKQWAKDTGNTLEY--HTEFLDENT-VEWAKGFDGINSLQTTPY 56 Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632 V ++ Y +K +T +VG D Sbjct: 57 AAGVFEKMHAY------------------------------------GIKFLTIRNVGTD 80 Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHII 692 ++++ +K GIR+ +V S +AE+ + + + R + + + +G++ Sbjct: 81 NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA----- 135 Query: 693 GPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKIL 729 +G L TVG++G G+IG KL K F +K++ Sbjct: 136 -GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFG-AKVI 172 |
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
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Score = 68.0 bits (167), Expect = 4e-12 Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 11/123 (8%) Query: 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR-SGENL 104 + + ++ ++ + + + +E KG + V ++ + Sbjct: 14 QYFKQWAKDTGNTLEYH---TEFLDENT-VEWAKGFDGINSLQTTPYAAGVFEKMHAYGI 69 Query: 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ------R 158 K + +VG D++ + +K GIR+ V S +AE+ + + + R + Sbjct: 70 KFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQA 129 Query: 159 HNW 161 ++ Sbjct: 130 GDY 132 |
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
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Score = 47.2 bits (113), Expect = 2e-05 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 9/56 (16%) Query: 807 YHGTINGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKIL 860 G++ +G L TVG++G G+IG KL K F +K++ Sbjct: 124 QAQLQAGDYEKA------GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFG-AKVI 172 |
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
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Score = 213 bits (546), Expect = 3e-62 Identities = 73/256 (28%), Positives = 124/256 (48%), Gaps = 13/256 (5%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 + LK+I +G D+++ E + R I+V S+D+ E IGL IA +R+ Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126 Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 SG + I G L G T+GIVG G IG + + A + + Y ++ Sbjct: 127 AKSGIF---------KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR 177 Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 E+ + A+ V L+ L SD I + ++KD + +I QF LMK I+VNTSR + Sbjct: 178 EKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAV 237 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADH--PLVQLDNCVLTPHTSSATKAVRDEKSS 1109 + +AL++++K K+ DV EP + L++ + ++T H + TK + + Sbjct: 238 NGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAE 297 Query: 1110 TSAENIIRGYKGEPMI 1125 + +N++ K MI Sbjct: 298 MTTQNLLNAMKELGMI 313 |
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
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Score = 124 bits (314), Expect = 2e-31 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Query: 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363 + A+ V L+ L SD I + ++KD + +I QF LMK I++NTSR ++ Sbjct: 180 AEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNG 239 Query: 364 EALVEFLKDKKIGGAGLDVMIPEPLPADH--PLVQLDN 399 +AL++++K K+ DV EP + L++ + Sbjct: 240 KALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHER 277 |
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
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Score = 80.7 bits (200), Expect = 2e-16 Identities = 44/205 (21%), Positives = 74/205 (36%), Gaps = 54/205 (26%) Query: 529 AFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTE 587 + L E + P +I ++ + + ++ SR +V K V+++ Sbjct: 18 LIKTLREKGIQVDYMP----EISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG------- 66 Query: 588 DFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVG 647 K LK+I +G D+++ E + R I+V Sbjct: 67 -------------------------------KKLKIIARAGIGLDNIDTEEAEKRNIKVV 95 Query: 648 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVG 705 S+D+ E IGL IA +R+ SG + I G L G T+G Sbjct: 96 YAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIF---------KKIEGLELAGKTIG 146 Query: 706 IVGLGNIGLETAKLLKAFKVSKILY 730 IVG G IG + + A + + Y Sbjct: 147 IVGFGRIGTKVGIIANAMGMKVLAY 171 |
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
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Score = 63.4 bits (155), Expect = 8e-11 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 11/125 (8%) Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95 + L+ + + + LR +D P + ++ + + ++ KV K+ Sbjct: 7 KALITDPIDEILIKTLR-EKGIQVDYMP----EISKEELLNIIGNYDIIVVRSRTKVTKD 61 Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155 V++ G+ LK+IA +G D++ +E + R I+V S+D+ E IGL IA +R+ Sbjct: 62 VIE-KGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKM 120 Query: 156 QQRHN 160 Sbjct: 121 YTSMA 125 |
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
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Score = 43.3 bits (103), Expect = 2e-04 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 11/52 (21%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 +G + I G L G T+GIVG G IG + + A + + Y Sbjct: 129 SGIF---------KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAY 171 |
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
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Score = 210 bits (538), Expect = 7e-61 Identities = 76/252 (30%), Positives = 122/252 (48%), Gaps = 10/252 (3%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 E L+V+ G D+++L +GI V + + +S + AE G+ + ++R+ + Sbjct: 88 EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 147 Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 + G+W K+ MG L G T+GI+GLG IG E A +++F + I Y Sbjct: 148 MKDGKWERKK-------FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP 200 Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 E + G Q +PL+ + DFI V L T L+ F+ K +VN +RGG++ Sbjct: 201 EVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 260 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 D+ AL+ L+ + GA LDV EP P D LV +N + PH ++TK + Sbjct: 261 DEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTKEAQSRCGEEI 319 Query: 1112 AENIIRGYKGEP 1123 A + KG+ Sbjct: 320 AVQFVDMVKGKS 331 |
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
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Score = 127 bits (321), Expect = 4e-32 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Query: 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 + G Q +PL+ + DFI V L T L+ F+ K ++N +RGG++D+ Sbjct: 204 ASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEG 263 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 AL+ L+ + GA LDV EP P D LV +N Sbjct: 264 ALLRALQSGQCAGAALDVFTEEP-PRDRALVDHEN 297 |
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
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Score = 78.4 bits (194), Expect = 1e-15 Identities = 43/218 (19%), Positives = 84/218 (38%), Gaps = 56/218 (25%) Query: 529 AFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTE 587 +IL + ++ + ++ I +L+ C L+ S +V V++ + Sbjct: 39 CRKILQDGGLQVVEKQ----NLSKEELIAELQDCEGLIVRSATKVTADVINAA------- 87 Query: 588 DFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVG 647 + L+V+ G D+++L +GI V Sbjct: 88 -------------------------------EKLQVVGRAGTGVDNVDLEAATRKGILVM 116 Query: 648 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVG 705 + + +S + AE G+ + ++R+ + + G+W K+ MG L G T+G Sbjct: 117 NTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKK-------FMGTELNGKTLG 169 Query: 706 IVGLGNIGLETAKLLKAFKVSKILY----TSRRVKEEG 739 I+GLG IG E A +++F + I Y + G Sbjct: 170 ILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 207 |
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
---|
Score = 58.8 bits (143), Expect = 4e-09 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 11/125 (8%) Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95 ++L+ +SL L+ + + + ++ I +L+ C L+ KV + Sbjct: 28 KVLISDSLDPCCRKILQ-DGGLQVVEKQ----NLSKEELIAELQDCEGLIVRSATKVTAD 82 Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155 V++ + E L+V+ G D++ L+ +GI V +S + AE G+ + ++R+ Sbjct: 83 VIN-AAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQI 141 Query: 156 QQRHN 160 Q Sbjct: 142 PQATA 146 |
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
---|
Score = 45.7 bits (109), Expect = 5e-05 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 9/52 (17%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 +G+W K+ MG L G T+GI+GLG IG E A +++F + I Y Sbjct: 150 DGKWERKK-------FMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGY 194 |
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
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Score = 209 bits (535), Expect = 1e-60 Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 20/263 (7%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 +K I T + G DH++ K G + V S + +AE + A+ + R Sbjct: 69 GVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRT 128 Query: 935 TSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG 994 + + + ++ TVG+VGLG IG A++ + I + +G Sbjct: 129 AKKNFKVDA-FMFSKE---VRNCTVGVVGLGRIGRVAAQIFHGMGATVIGED--VFEIKG 182 Query: 995 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQE 1054 V LD + +SD I + K+ ++ R MK AILVN +RG L+D E Sbjct: 183 IEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTE 242 Query: 1055 ALVEFLKDKKIGGAGLDVMIPEP---------LPADHPLVQ-----LDNCVLTPHTSSAT 1100 A++E ++ K+GG G DV+ E ++PL + ++TPH S T Sbjct: 243 AVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYT 302 Query: 1101 KAVRDEKSSTSAENIIRGYKGEP 1123 S +N+ + Sbjct: 303 DEAVKNMVEVSYQNLKDLAETGD 325 |
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
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Score = 116 bits (294), Expect = 1e-28 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 V LD + +SD I + K+ ++ R MK AIL+N +RG L+D EA Sbjct: 184 EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEA 243 Query: 366 LVEFLKDKKIGGAGLDVMIPEP--LPADHPLVQLDN 399 ++E ++ K+GG G DV+ E D +L+N Sbjct: 244 VIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLEN 279 |
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
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Score = 90.4 bits (225), Expect = 1e-19 Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 50/236 (21%) Query: 514 KPKLFLTRDDYSRVPAFEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572 K + RD +P FE + F I + E G A++ Sbjct: 2 KVLCYGVRDV--ELPIFEACNKEFGYDIKC--VPDYLNTKETAEMAAGFDAVILRGNCFA 57 Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632 +KQ LD + LGV K I T + G D Sbjct: 58 NKQNLDI--------------YKK---------------LGV-------KYILTRTAGTD 81 Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHII 692 H++ K G + V S + +AE + A+ + R + + + Sbjct: 82 HIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDA-FMF 140 Query: 693 GPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKIL----YTSRRVKEEGQLFSL 744 ++ TVG+VGLG IG A++ + ++ + + +++ SL Sbjct: 141 SKE---VRNCTVGVVGLGRIGRVAAQIFHGMG-ATVIGEDVFEIKGIEDYCTQVSL 192 |
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
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Score = 66.1 bits (162), Expect = 1e-11 Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 10/123 (8%) Query: 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGEN-L 104 +DI + E G A++ + +K+ LD + + Sbjct: 14 PIFEACNKEFGYDIKCV---PDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGV 70 Query: 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ------R 158 K I T + G DH+ + K G + V S + +AE + A+ + R + Sbjct: 71 KYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAK 130 Query: 159 HNW 161 N+ Sbjct: 131 KNF 133 |
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
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Score = 45.7 bits (109), Expect = 5e-05 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Query: 807 YHGTINGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 854 T + + + ++ TVG+VGLG IG A++ Sbjct: 125 TSRTAKKNFKVDA-FMFSKE---VRNCTVGVVGLGRIGRVAAQIFHGM 168 |
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
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Score = 207 bits (528), Expect = 2e-57 Identities = 79/252 (31%), Positives = 121/252 (48%), Gaps = 10/252 (3%) Query: 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 933 LK++ VG D++++ ARG+ V + + + AE+ + L +A SR+ Sbjct: 65 PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADAS 124 Query: 934 ITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 991 + W G + G TVG+VGLG IG A+ + AF + Y Sbjct: 125 LREHTWKRSS-------FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP 177 Query: 992 EEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL 1051 LG +L+ LD L A +DFI V T +T LI ++ + KP I+VN +RGGL+ Sbjct: 178 ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 237 Query: 1052 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 D+ AL + + + AGLDV EP D PL +L V+TPH ++T +D + Sbjct: 238 DEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGASTAEAQDRAGTDV 296 Query: 1112 AENIIRGYKGEP 1123 AE++ GE Sbjct: 297 AESVRLALAGEF 308 |
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
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Score = 121 bits (305), Expect = 1e-28 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQE 364 LG +L+ LD L A +DFI V T +T LI ++ + KP I++N +RGGL+D+ Sbjct: 181 AQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEA 240 Query: 365 ALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 AL + + + AGLDV EP D PL +L Sbjct: 241 ALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQ 274 |
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
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Score = 89.3 bits (222), Expect = 2e-18 Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 54/230 (23%) Query: 511 IMSKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRD 570 ++S P + + D + LG+ ++ RD + + ALL S Sbjct: 1 MVSLPVVLIA-DKLAPS-TVAALGDQVEVRWVDG----PDRDKLLAAVPEADALLVRSAT 54 Query: 571 RVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVG 630 VD +VL + LK++ VG Sbjct: 55 TVDAEVLAAA--------------------------------------PKLKIVARAGVG 76 Query: 631 YDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 690 D++++ ARG+ V + + + AE+ + L +A SR+ + W Sbjct: 77 LDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSS-- 134 Query: 691 IIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 738 G + G TVG+VGLG IG A+ + AF ++ V Sbjct: 135 -----FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPA 178 |
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
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Score = 62.7 bits (153), Expect = 4e-10 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 8/123 (6%) Query: 41 RLLVPESLSKL---RFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVL 97 +L+ + L+ + ++ RD + + ALL VD EVL Sbjct: 6 VVLIADKLAPSTVAALGDQVEVRWVD----GPDRDKLLAAVPEADALLVRSATTVDAEVL 61 Query: 98 DRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 LK++A VG D++ +D +RG+ V + + AE+ + L +A SR+ Sbjct: 62 AA-APKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPA 120 Query: 158 RHN 160 Sbjct: 121 ADA 123 |
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
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Score = 45.4 bits (108), Expect = 1e-04 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 9/52 (17%) Query: 812 NGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 W G + G TVG+VGLG IG A+ + AF + Y Sbjct: 127 EHTWKRSS-------FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAY 171 |
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
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Score = 199 bits (508), Expect = 4e-57 Identities = 78/256 (30%), Positives = 117/256 (45%), Gaps = 12/256 (4%) Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930 + L + G D L L R ++ +V I ++EY G +++ R+ Sbjct: 63 AKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLY 121 Query: 931 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990 R+ W GLKG T+ I+G G+IG A K F + K+L SR Sbjct: 122 REQQKQRLWQSHPYQ-------GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSG 173 Query: 991 KE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 +E G QL L+ + A++D I T++T L +F KP AIL N RG Sbjct: 174 RERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGN 233 Query: 1050 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109 +++ L+ L+ K+G A LDV EPLPAD PL N ++TPH S+ + D+ + Sbjct: 234 AINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS--FPDDVAQ 291 Query: 1110 TSAENIIRGYKGEPMI 1125 N IR G+P+ Sbjct: 292 IFVRNYIRFIDGQPLD 307 |
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
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Score = 116 bits (293), Expect = 2e-28 Identities = 33/87 (37%), Positives = 46/87 (52%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 L+ + A++D I T++T L +F KP AIL N RG +++ L+ L+ Sbjct: 188 LNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTG 247 Query: 374 KIGGAGLDVMIPEPLPADHPLVQLDNC 400 K+G A LDV EPLPAD PL N Sbjct: 248 KLGMAVLDVFEQEPLPADSPLWGQPNL 274 |
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
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Score = 72.3 bits (178), Expect = 1e-13 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 L + G D L L R ++ +V I ++EY G +++ R+ R+ Sbjct: 66 NKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQ 124 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 W GLKG T+ I+G G+IG A K F + K+L SR +E Sbjct: 125 QKQRLWQSHPYQ-------GLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSGRE 175 |
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
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Score = 49.2 bits (118), Expect = 4e-06 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 10/92 (10%) Query: 76 EKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPV 135 + + L+ P K +L + L + G D L LD R ++ V + Sbjct: 43 KLIGEAHILMAEP--ARAKPLLAK-ANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGI 98 Query: 136 SSDTVAEYNIGLAIAVSRRF------QQRHNW 161 ++EY G +++ R+ Q++ W Sbjct: 99 FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLW 130 |
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
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Score = 43.8 bits (104), Expect = 2e-04 Identities = 12/25 (48%), Positives = 15/25 (60%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAF 854 LKG T+ I+G G+IG A K F Sbjct: 138 LKGRTLLILGTGSIGQHIAHTGKHF 162 |
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
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Score = 189 bits (482), Expect = 1e-53 Identities = 57/260 (21%), Positives = 98/260 (37%), Gaps = 17/260 (6%) Query: 875 NLKVITTFSVGYDHL-----ELHEIKARGIR-VGSVGHISSDTVAEYNIGLAIAVSRRFQ 928 LK + G D + E+ I + EY + + RRF Sbjct: 59 RLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFD 118 Query: 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 + + W + + +VGI+G G +G + A+ L+A+ + SR Sbjct: 119 DYQALKNQALWKPLPEY-------TREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSR 170 Query: 989 RVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 K G L ++ + T T +I + + A ++N +R Sbjct: 171 SRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLAR 230 Query: 1048 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEK 1107 G + + L+ L K+ GA LDV EPLP + PL + +TPH ++ T+ E Sbjct: 231 GVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTR--PAEA 288 Query: 1108 SSTSAENIIRGYKGEPMIYE 1127 + I + KGEP+ + Sbjct: 289 IDYISRTITQLEKGEPVTGQ 308 |
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
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Score = 113 bits (285), Expect = 1e-27 Identities = 22/86 (25%), Positives = 37/86 (43%) Query: 314 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 L ++ + T T +I + + A ++N +RG + + L+ L Sbjct: 187 LRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSG 246 Query: 374 KIGGAGLDVMIPEPLPADHPLVQLDN 399 K+ GA LDV EPLP + PL + Sbjct: 247 KLKGAMLDVFSQEPLPQESPLWRHPR 272 |
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
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Score = 63.9 bits (156), Expect = 6e-11 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 14/125 (11%) Query: 619 KNLKVITTFSVGYDHL-----ELHEIKARGIR-VGSVGHISSDTVAEYNIGLAIAVSRRF 672 + LK + G D + E+ I + EY + + RRF Sbjct: 58 RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRF 117 Query: 673 QEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 + + W + + +VGI+G G +G + A+ L+A+ + S Sbjct: 118 DDYQALKNQALWKPLPEY-------TREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWS 169 Query: 733 RRVKE 737 R K Sbjct: 170 RSRKS 174 |
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
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Score = 42.7 bits (101), Expect = 4e-04 Identities = 9/25 (36%), Positives = 17/25 (68%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAF 854 + +VGI+G G +G + A+ L+A+ Sbjct: 137 REEFSVGIMGAGVLGAKVAESLQAW 161 |
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
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Score = 185 bits (473), Expect = 2e-51 Identities = 73/281 (25%), Positives = 118/281 (41%), Gaps = 30/281 (10%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRNKV--KTPKRTENLKVITTFSVGY 886 L+ A + L+ +L ++ + I SR + E L I F++G Sbjct: 21 LRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGT 80 Query: 887 DHLELHEIKARGIRV----GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALK 942 + ++L RGI V S ++ +VAE IG + + R E G Sbjct: 81 NQVDLDAAAKRGIPVFNAPFS----NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL 136 Query: 943 QTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILY--TSRRVKEEGTALG 998 +G +GI+G G+IG + L ++ + Y ++ Sbjct: 137 AA-------GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG----NA 185 Query: 999 AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVE 1058 Q+ L L SD + + T+ ++G K+ SLMKP ++L+N SRG ++D AL + Sbjct: 186 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALAD 245 Query: 1059 FLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNCVLTPH 1095 L K + GA +DV EP P PL + DN +LTPH Sbjct: 246 ALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH 286 |
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
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Score = 115 bits (291), Expect = 1e-27 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 4/98 (4%) Query: 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 Q+ L L SD + + T+ ++G K+ SLMKP ++LIN SRG ++D A Sbjct: 183 GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPA 242 Query: 366 LVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDN 399 L + L K + GA +DV EP P PL + DN Sbjct: 243 LADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDN 280 |
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
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Score = 68.4 bits (168), Expect = 5e-12 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 55/191 (28%) Query: 546 EGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRH 605 +G + + E +R + SR + + V++ + Sbjct: 33 KGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA------------------------- 67 Query: 606 VNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRV----GSVGHISSDTVAEYN 661 + L I F++G + ++L RGI V S ++ +VAE Sbjct: 68 -------------EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFS----NTRSVAELV 110 Query: 662 IGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKL 719 IG + + R E G +G +GI+G G+IG + L Sbjct: 111 IGELLLLLRGVPEANAKAHRGVGNKLAA-------GSFEARGKKLGIIGYGHIGTQLGIL 163 Query: 720 LKAFKVSKILY 730 ++ + Y Sbjct: 164 AESLGMYVYFY 174 |
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
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Score = 58.0 bits (141), Expect = 9e-09 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 13/126 (10%) Query: 41 RLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE 95 + L+ E + + LR +I+ + + + + E ++ + + ++ Sbjct: 6 KFLLVEGVHQKALESLRAAGYTNIEFHKGA---LDDEQLKESIRDAHFIGLRSRTHLTED 62 Query: 96 VLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTV-GPVS-SDTVAEYNIGLAIAVSR 153 V++ + E L I F++G + + LD RGI V P S + +VAE IG + + R Sbjct: 63 VIN-AAEKLVAIGAFAIGTNQVDLDAAAKRGIPV--FNAPFSNTRSVAELVIGELLLLLR 119 Query: 154 RFQQRH 159 + + Sbjct: 120 GVPEAN 125 |
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
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Score = 182 bits (464), Expect = 4e-50 Identities = 80/281 (28%), Positives = 121/281 (43%), Gaps = 30/281 (10%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRNKVKTPK---RTENLKVITTFSVG 885 K + V L+ A L+KA I SR ++ T + L + FSVG Sbjct: 32 FKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQL-TEEIFAAANRLIAVGCFSVG 90 Query: 886 YDHLELHEIKARGIRV----GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWAL 941 + +EL + RGI V S ++ +VAE IG I + RR +G W Sbjct: 91 TNQVELKAARKRGIPVFNAPFS----NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEK 146 Query: 942 KQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGA 999 ++G T+GIVG GNIG + L ++ ++ Y ++ Sbjct: 147 TAI-------GSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYD---TSDKLQYGNV 196 Query: 1000 QLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVE 1058 + LD L SD + + +K T +LI + MK A L+N +RG +D EAL + Sbjct: 197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAK 256 Query: 1059 FLKDKKIGGAGLDVMIPEPL----PADHPLVQLDNCVLTPH 1095 L++ + GA +DV EP PL L+N +LTPH Sbjct: 257 VLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPH 297 |
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
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Score = 112 bits (283), Expect = 2e-26 Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 5/98 (5%) Query: 307 LGAQLVP-LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEA 365 + LD L SD + + +K T +LI + MK A LIN +RG +D EA Sbjct: 194 GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEA 253 Query: 366 LVEFLKDKKIGGAGLDVMIPEPL----PADHPLVQLDN 399 L + L++ + GA +DV EP PL L+N Sbjct: 254 LAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLEN 291 |
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
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Score = 69.2 bits (170), Expect = 3e-12 Identities = 40/209 (19%), Positives = 71/209 (33%), Gaps = 58/209 (27%) Query: 529 AFEILGEM-FDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTE 587 A E + +T+ + + I+ + + SR ++ +++ + Sbjct: 28 AVEYFKSSGYTNVTHL--PKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAA------- 78 Query: 588 DFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRV- 646 L + FSVG + +EL + RGI V Sbjct: 79 -------------------------------NRLIAVGCFSVGTNQVELKAARKRGIPVF 107 Query: 647 ---GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKG 701 S ++ +VAE IG I + RR +G W ++G Sbjct: 108 NAPFS----NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAI-------GSREVRG 156 Query: 702 ATVGIVGLGNIGLETAKLLKAFKVSKILY 730 T+GIVG GNIG + L ++ ++ Y Sbjct: 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYY 185 |
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
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Score = 60.3 bits (147), Expect = 2e-09 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 13/133 (9%) Query: 34 SFSRQGSRLLVPESLSK-----LRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNP 88 S SR +L+ E +S+ + + ++ P + + + I+ + + Sbjct: 10 SLSRDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKA---LDKADLIKAISSAHIIGIRS 66 Query: 89 HQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTV-GPVS-SDTVAEYNIG 146 ++ +E+ L + FSVG + + L + RGI V P S + +VAE IG Sbjct: 67 RTQLTEEIFAA-ANRLIAVGCFSVGTNQVELKAARKRGIPV--FNAPFSNTRSVAELVIG 123 Query: 147 LAIAVSRRFQQRH 159 I + RR R Sbjct: 124 EIIMLMRRIFPRS 136 |
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
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Score = 178 bits (454), Expect = 3e-49 Identities = 55/227 (24%), Positives = 87/227 (38%), Gaps = 36/227 (15%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 + + T + G DH++ +K GI + ++ V EY + ++ R Sbjct: 61 PINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER-------- 112 Query: 935 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992 G L+ T+GIVG+GN+G L+A + +L R Sbjct: 113 -----------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAAR 155 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRG 1048 LD L E+D + L KD T L +KP AIL+N RG Sbjct: 156 G---DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212 Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPH 1095 ++D AL+ L + LDV EP + L++ + + T H Sbjct: 213 PVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVD-IGTSH 257 |
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
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Score = 110 bits (276), Expect = 8e-26 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 299 FERSNGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILIN 354 + G LD L E+D + L KD T L +KP AILIN Sbjct: 151 PRAARG--DEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208 Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 RG ++D AL+ L + LDV EP + L++ + Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVD 252 |
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
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Score = 88.1 bits (219), Expect = 2e-18 Identities = 36/204 (17%), Positives = 67/204 (32%), Gaps = 72/204 (35%) Query: 529 AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTED 588 A E+ + ++ P R I +E+L AL+ S +V++ +L + Sbjct: 15 ARELFSRLGEVKAVP------GRPIPVEELNHADALMVRSVTKVNESLLSGT-------- 60 Query: 589 FFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGS 648 + + T + G DH++ +K GI + Sbjct: 61 -------------------------------PINFVGTATAGTDHVDEAWLKQAGIGFSA 89 Query: 649 VGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGI 706 ++ V EY + ++ R G L+ T+GI Sbjct: 90 APGCNAIAVVEYVFSALLMLAER-------------------------DGFSLRDRTIGI 124 Query: 707 VGLGNIGLETAKLLKAFKVSKILY 730 VG+GN+G L+A + +L Sbjct: 125 VGVGNVGSRLQTRLEALGIRTLLC 148 |
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
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Score = 69.6 bits (171), Expect = 2e-12 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 10/116 (8%) Query: 41 RLLVPESLSKLR--FNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLD 98 ++LV E++ R F+ ++ P R I +E+L AL+ KV++ +L Sbjct: 5 KILVDENMPYARELFSRLGEVKAVP------GRPIPVEELNHADALMVRSVTKVNESLLS 58 Query: 99 RSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRR 154 G + + T + G DH+ +K GI ++ V EY + ++ R Sbjct: 59 --GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER 112 |
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
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Score = 46.1 bits (110), Expect = 5e-05 Identities = 12/32 (37%), Positives = 19/32 (59%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 L+ T+GIVG+GN+G L+A + +L Sbjct: 117 LRDRTIGIVGVGNVGSRLQTRLEALGIRTLLC 148 |
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
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Score = 178 bits (453), Expect = 4e-49 Identities = 55/227 (24%), Positives = 91/227 (40%), Gaps = 36/227 (15%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 ++ + T ++G DHL+L GI S ++ V +Y +G +A++ Sbjct: 58 PVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV-------- 109 Query: 935 TSGEWALKQTHIIGPNIMG--LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 992 G L T G+VG G +G ++L+ ++ R Sbjct: 110 -----------------RGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR 152 Query: 993 EGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRG 1048 E + V L+ L AE+D I + L +D T L+ + + ++P LVN SRG Sbjct: 153 E---PDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG 209 Query: 1049 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPH 1095 ++D +AL L+ LDV E P P + + TPH Sbjct: 210 AVVDNQALRRLLEGGADLEVALDVWEGE--PQADPELAARCLIATPH 254 |
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
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Score = 105 bits (263), Expect = 3e-24 Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%) Query: 299 FERSNGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILIN 354 ++ + V L+ L AE+D I + L +D T L+ + + ++P L+N Sbjct: 148 PRQARE--PDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205 Query: 355 TSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 399 SRG ++D +AL L+ LDV E P P + Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGE--PQADPELAARC 248 |
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
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Score = 87.0 bits (216), Expect = 3e-18 Identities = 33/204 (16%), Positives = 55/204 (26%), Gaps = 72/204 (35%) Query: 529 AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTED 588 + I P R I L LL S V + L S Sbjct: 12 VDAFFADQGSIRRLP------GRAIDRAALAEVDVLLVRSVTEVSRAALAGS-------- 57 Query: 589 FFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGS 648 ++ + T ++G DHL+L GI S Sbjct: 58 -------------------------------PVRFVGTCTIGTDHLDLDYFAEAGIAWSS 86 Query: 649 VGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG--LKGATVGI 706 ++ V +Y +G +A++ G L T G+ Sbjct: 87 APGCNARGVVDYVLGCLLAMAEV-------------------------RGADLAERTYGV 121 Query: 707 VGLGNIGLETAKLLKAFKVSKILY 730 VG G +G ++L+ ++ Sbjct: 122 VGAGQVGGRLVEVLRGLGWKVLVC 145 |
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
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Score = 65.8 bits (161), Expect = 3e-11 Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 10/116 (8%) Query: 41 RLLVPESLSKLR--FNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLD 98 R+L E++ + F + I P R I L LL +V + L Sbjct: 2 RILADENIPVVDAFFADQGSIRRLP------GRAIDRAALAEVDVLLVRSVTEVSRAALA 55 Query: 99 RSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRR 154 G ++ + T ++G DHL LD GI + ++ V +Y +G +A++ Sbjct: 56 --GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV 109 |
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
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Score = 47.3 bits (113), Expect = 2e-05 Identities = 8/32 (25%), Positives = 15/32 (46%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILY 861 L T G+VG G +G ++L+ ++ Sbjct: 114 LAERTYGVVGAGQVGGRLVEVLRGLGWKVLVC 145 |
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
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Score = 82.7 bits (204), Expect = 3e-17 Identities = 37/249 (14%), Positives = 70/249 (28%), Gaps = 16/249 (6%) Query: 831 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKV-KTPKRTENLKVITTFSVGYDHL 889 A + +VG + + K T + E KV T FS L Sbjct: 27 FDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNESIVL 86 Query: 890 ELHEIKARG----IRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 945 I+ + G + + + N L + R I + E + Sbjct: 87 TEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIM--M 144 Query: 946 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYT-SRRVKEEGTALGAQLVPL 1004 I + GA V ++GLG +G+ A+ A + + +G + + Sbjct: 145 AIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHI 204 Query: 1005 DTL---CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 + D T ++ + M +++ + E Sbjct: 205 SKAAQELRDVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRG 259 Query: 1062 DKKIGGAGL 1070 K + GL Sbjct: 260 IKALLVPGL 268 |
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
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Score = 46.1 bits (109), Expect = 4e-05 Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 8/78 (10%) Query: 306 ALGAQLVPLDTL---CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD 362 +G + + + D T ++ + M +I+ + Sbjct: 196 EMGMEPFHISKAAQELRDVDVCINTI-----PALVVTANVLAEMPSHTFVIDLASKPGGT 250 Query: 363 QEALVEFLKDKKIGGAGL 380 E K + GL Sbjct: 251 DFRYAEKRGIKALLVPGL 268 |
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
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Score = 44.2 bits (104), Expect = 1e-04 Identities = 24/144 (16%), Positives = 49/144 (34%), Gaps = 20/144 (13%) Query: 609 ETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 668 E+++ +I+ G + L++ + V + D +A YN Sbjct: 82 ESIVLTEEMIEKTPNHCVVYSGISNTYLNQC-MKKTNRTLVKLMERDDIAIYN------- 133 Query: 669 SRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKI 728 I + E + I + GA V ++GLG +G+ A+ A K+ Sbjct: 134 ---------SIPTAEGTIM--MAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGA-KV 181 Query: 729 LYTSRRVKEEGQLFSLVYDFCRYS 752 +R ++ + + S Sbjct: 182 KVGARESDLLARIAEMGMEPFHIS 205 |
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
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Score = 42.2 bits (99), Expect = 6e-04 Identities = 26/188 (13%), Positives = 60/188 (31%), Gaps = 16/188 (8%) Query: 700 KGATVGIVGL-----GNIGLETAKLLK-AFKVSKILYTSRRVKEEGQLFSLVYDFCRYSI 753 A + +VG G IG+ ++ + + + E ++ + Sbjct: 27 FDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNESIVL 86 Query: 754 GGVTIKRLVKKTFILSFGGLVVTVLHVHIGDLPAESFEDQVQTDGLKTLTELCYHGTING 813 I++ + + G+ T L+ + + + D + GTI Sbjct: 87 TEEMIEKTPNHCVV--YSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMM 144 Query: 814 EWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRT 873 A++ T + GA V ++GLG +G+ A+ A + + + Sbjct: 145 --AIQHTDF------TIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE 196 Query: 874 ENLKVITT 881 ++ Sbjct: 197 MGMEPFHI 204 |
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 74.5 bits (182), Expect = 1e-13 Identities = 97/644 (15%), Positives = 180/644 (27%), Gaps = 214/644 (33%) Query: 71 RDI---FIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHD----HLHLDEIK 123 +DI F + C Q + K +L S E + I + Sbjct: 19 KDILSVFEDAFV--DNFDCKDVQDMPKSIL--SKEEIDHI--IMSKDAVSGTLRLFWTLL 72 Query: 124 SRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFA-EIQTRALDTK-FP 181 S+ + V ++ V + + ++ S E + ++ T+ + Sbjct: 73 SKQ----------EEMVQKF-------VEEVLRINYKFLM--SPIKTEQRQPSMMTRMYI 113 Query: 182 AKQQNLHNVKVRLFPRKN-EICQKYSTHKAYLLISLKDQKK---NGSQNPKWRM-GS-KT 235 ++ L+N ++F + N Q Y + LL L+ K +G + GS KT Sbjct: 114 EQRDRLYND-NQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDG-------VLGSGKT 164 Query: 236 ------------DTNHYFKAF------ENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGS 277 FK F NS L E+ L + + + S Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL--EMLQKL--LYQIDPNWTSRSDHS 220 Query: 278 QNPKWRMGS-KTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAES-----DF---IFVTC 328 N K R+ S + + +E L+ L + + I +T Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENC--------LLVLLNVQNAKAWNAFNLSCKILLT- 271 Query: 329 ALTKD---TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 385 T+ T+ L T I ++ L E L K + P Sbjct: 272 --TRFKQVTDFLSAATT------THISLDHHSMTLTPDEVKSLLL--KYLD------CRP 315 Query: 386 EPLPAD----HPLVQLDNCGGAGLDVMIPEPLPADHP---------------------LV 420 + LP + +P +I E + D L Sbjct: 316 QDLPREVLTTNPRR----LS------IIAESIR-DGLATWDNWKHVNCDKLTTIIESSLN 364 Query: 421 QLDNCE--EFFEEL--FDKNFQ------SI---DPPGAEPGSGQNLATT--SKSCILKDK 465 L+ E + F+ L F + S+ D ++ + S + K Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV---MVVVNKLHKYSLVEKQP 421 Query: 466 TLPRISASHLLPFK-----------------KYSGVPRLFERSTPTQKA----FIFHLLY 504 IS + + Y+ +P+ F+ F H+ + Sbjct: 422 KESTISI-PSIYLELKVKLENEYALHRSIVDHYN-IPKTFDSDDLIPPYLDQYFYSHIGH 479 Query: 505 FFHNFKI-MSK-----PKLFL---------TRDDYSRVPAFEILGEMFDIITY------- 542 H I + +FL D + + IL + + Y Sbjct: 480 --HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537 Query: 543 -PASEGQIPRDI--FIEKLRGCSALLCTSRDRVDKQVLDESGGY 583 P E ++ I F+ K+ + + D + ++ E Sbjct: 538 DPKYE-RLVNAILDFLPKI-EENLICSKYTDLLRIALMAEDEAI 579 |
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Score = 68.0 bits (165), Expect = 1e-11 Identities = 112/710 (15%), Positives = 201/710 (28%), Gaps = 240/710 (33%) Query: 427 EFFEELFDKNFQSIDPPGAEPGSGQNLATTSKSC--ILKDKTLPRISASHLLPFKKYSGV 484 FE+ F NF D + + I+ K SG Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKS-----ILSKEEIDHIIMSKD-------------AVSGT 64 Query: 485 PRLFE--RSTPTQ--KAFIFHLLYFFHNFKIMSK-------PKLFLTRDDYSRVPAFEIL 533 RLF S + + F+ +L + F +MS P + R + Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYND- 122 Query: 534 GEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQV-LDESGGYRCTEDFFGL 592 ++F ++ + R KLR ALL R K V +D G G Sbjct: 123 NQVF-------AKYNVSRLQPYLKLR--QALL---ELRPAKNVLIDGVLG-------SG- 162 Query: 593 DLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTF-------SVGY---DHLELHEIKAR 642 K T + + + KV ++ L ++ Sbjct: 163 ----------K------TWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 Query: 643 GIRVGSVGHISSDTVA--EYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLK 700 ++ SD + + I A RR + + + ++ Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--------YENCLLV-------- 249 Query: 701 GATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEEGQLFSLVYDFCRYSIGGVTIK 759 L N+ + AK AF +S KIL T+R F V DF + T Sbjct: 250 --------LLNV--QNAKAWNAFNLSCKILLTTR--------FKQVTDF----LSAATTT 287 Query: 760 RLVKKTFILSFG-----GLVVTVLHVHIGDLPAESFEDQVQTDGLKTLTELCYHGTINGE 814 + ++ L++ L DLP E Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-------------------------- 321 Query: 815 WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTE 874 L P + + ++ R+ + T + Sbjct: 322 -VLT----TNPRRLSIIAESI----------------------------RDGLATWDNWK 348 Query: 875 NL---KVITTFSVGYDHLELHEIKAR----GIRVGSVGHISSDTVA------EYNIGLAI 921 ++ K+ T + LE E + + S HI + ++ + + + Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVV 407 Query: 922 A--------VSRRFQEGRKCITSGEWALKQT-------H--IIGP-NIM-GLKGATVGIV 962 V ++ +E I S LK H I+ NI + Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467 Query: 963 GLGN-----IG--LETAKLLKAFKVSKILYTS-----RRVKEEGTALGAQLVPLDTLCAE 1010 L IG L+ + + + ++++ ++++ + TA A L+TL Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL--- 524 Query: 1011 SDFIFVTCALTKDT---EQLIGR-KQFSLMKPTAILVNTSRGGLLDQEAL 1056 F + + E+L+ F L K L+ + LL + AL Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDF-LPKIEENLICSKYTDLL-RIAL 572 |
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
---|
Score = 45.6 bits (107), Expect = 1e-04 Identities = 65/471 (13%), Positives = 140/471 (29%), Gaps = 149/471 (31%) Query: 719 LLKAFK----------VSKILYTSRRVKE-------EGQLFSLVYDFCRYSIGGVTIKRL 761 AF + K + + + L + +++ Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--QEEMVQKF 82 Query: 762 VKKTFILSFGGLVVTVLHVHIG-DLPAESFEDQVQTDGLKTLTELCYHGTINGE---WAL 817 V++ +++ L+ + + + +Q D L ++ ++ L Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKL 140 Query: 818 KQTHIIGPNIMGLKGAT-VGIVGLGNIG---LETAKLLKAFKV-----SKILYTSRNKVK 868 +Q ++ L+ A V I G+ G + + ++KV KI + + Sbjct: 141 RQ------ALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCN 193 Query: 869 TP----KRTENL--KVITTFSVGYDH-----LELHEIKARGIRVGSVGHISSDTVAEYNI 917 +P + + L ++ ++ DH L +H I+A Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-------------------- 233 Query: 918 GLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKA 977 RR + + + ++ L N+ + AK A Sbjct: 234 ------LRRLLKSKP--------YENCLLV----------------LLNV--QNAKAWNA 261 Query: 978 FKVS-KILYTSR--RVKEEGTALGAQLVPLDTLC-----AESDFIFVTCALTKDTE---- 1025 F +S KIL T+R +V + +A + LD E + + + + Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321 Query: 1026 ---------QLIGR------------KQFSLMKPTAIL---VNTSRGGLLDQ--EALVEF 1059 +I K + K T I+ +N + + L F Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381 Query: 1060 LKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 I L ++ + + +D +V ++ H S + + K ST Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVV-VNKL----HKYSLVE--KQPKEST 425 |
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300 | Back alignment and structure |
---|
Score = 42.5 bits (100), Expect = 4e-04 Identities = 37/223 (16%), Positives = 66/223 (29%), Gaps = 18/223 (8%) Query: 831 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVK-TPKRTENLKVITTFSVGYDHL 889 + A + +VG + +K + + T V T FS L Sbjct: 29 QQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSNEEVVL 88 Query: 890 --ELHEIKARGIRV--GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH 945 + + + G + A+ L R I + E + Sbjct: 89 KQDHLDRTPAHCVIFSGISNAYLENIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIM--L 146 Query: 946 IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEGTALGAQLVP 1003 I + G+ V ++GLG G+ A+ A V K+ S T +G Sbjct: 147 AIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANV-KVGARSSAHLARITEMGLVPFH 205 Query: 1004 LDTL---CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILV 1043 D L + D T ++ + S M P +++ Sbjct: 206 TDELKEHVKDIDICINTI-----PSMILNQTVLSSMTPKTLIL 243 |
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
Query | 1128 | |||
3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 100.0 | |
2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 100.0 | |
3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 100.0 | |
3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 100.0 | |
3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 100.0 | |
4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 100.0 | |
2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 100.0 | |
3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 100.0 | |
3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 100.0 | |
4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 100.0 | |
1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 100.0 | |
3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 100.0 | |
1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 100.0 | |
2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 100.0 | |
3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 100.0 | |
4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 100.0 | |
1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 100.0 | |
2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 100.0 | |
1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 100.0 | |
1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 100.0 | |
2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 100.0 | |
2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 100.0 | |
1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 100.0 | |
1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 100.0 | |
3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 100.0 | |
4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 100.0 | |
1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 100.0 | |
3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 100.0 | |
1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 100.0 | |
2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 100.0 | |
2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 100.0 | |
2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 100.0 | |
2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 100.0 | |
4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 100.0 | |
2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 100.0 | |
3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 100.0 | |
2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 100.0 | |
3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 100.0 | |
4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 100.0 | |
3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 100.0 | |
2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 100.0 | |
3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 100.0 | |
3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 100.0 | |
1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 100.0 | |
1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 100.0 | |
1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 100.0 | |
2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 100.0 | |
1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 100.0 | |
1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 100.0 | |
1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 100.0 | |
2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 100.0 | |
2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 100.0 | |
2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 100.0 | |
2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 100.0 | |
3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 100.0 | |
3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 100.0 | |
3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 100.0 | |
1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 100.0 | |
2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 100.0 | |
2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 100.0 | |
2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 100.0 | |
2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 100.0 | |
1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 100.0 | |
1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 100.0 | |
2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 100.0 | |
3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 100.0 | |
1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 99.97 | |
3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 99.97 | |
3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 99.9 | |
1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 99.9 | |
3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.88 | |
3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.86 | |
2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.83 | |
2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.82 | |
3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.78 | |
1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 99.73 | |
2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.69 | |
2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.68 | |
3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.62 | |
3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.59 | |
2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.58 | |
3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.56 | |
1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.53 | |
1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.52 | |
1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.51 | |
3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 99.47 | |
1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.3 | |
1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 99.27 | |
2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.23 | |
3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.22 | |
3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.16 | |
1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.15 | |
1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 99.06 | |
2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 98.98 | |
4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 98.96 | |
3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 98.94 | |
4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 98.94 | |
3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 98.92 | |
3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 98.92 | |
3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.91 | |
3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 98.88 | |
4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.86 | |
3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 98.86 | |
3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.84 | |
3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 98.84 | |
4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 98.84 | |
2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 98.83 | |
4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 98.82 | |
3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 98.81 | |
3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.81 | |
4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.8 | |
2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.79 | |
3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 98.78 | |
3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 98.77 | |
1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 98.75 | |
3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 98.74 | |
2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 98.65 | |
3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 98.61 | |
4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.59 | |
1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.58 | |
1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 98.56 | |
2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 98.56 | |
1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 98.55 | |
2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.55 | |
2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 98.54 | |
3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.54 | |
2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.53 | |
3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 98.53 | |
2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.52 | |
2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 97.89 | |
2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 98.49 | |
1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.46 | |
2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.43 | |
3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.41 | |
1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.37 | |
2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.36 | |
2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.36 | |
2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.34 | |
1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.34 | |
1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.28 | |
3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.28 | |
2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.27 | |
1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.26 | |
3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.18 | |
3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.18 | |
3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.18 | |
2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.17 | |
2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.11 | |
2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.06 | |
1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.03 | |
3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.03 | |
1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.03 | |
1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 98.01 | |
2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.99 | |
2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 97.95 | |
3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 97.93 | |
1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 97.92 | |
1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.86 | |
2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.84 | |
3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.83 | |
4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 97.82 | |
3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 97.76 | |
3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 97.75 | |
3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.73 | |
3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.71 | |
1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 97.7 | |
3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.69 | |
3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.68 | |
2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 97.67 | |
1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.67 | |
3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 97.66 | |
4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.66 | |
4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.65 | |
3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 97.64 | |
2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.64 | |
4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.61 | |
3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.61 | |
3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.6 | |
1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.59 | |
1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.58 | |
2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.58 | |
2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.55 | |
1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.54 | |
1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.54 | |
1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 97.54 | |
3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.52 | |
2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 97.51 | |
3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 97.5 | |
1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 97.46 | |
2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.44 | |
1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.43 | |
1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.43 | |
1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 97.43 | |
3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.42 | |
3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.4 | |
1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.39 | |
2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.35 | |
1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.34 | |
3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.31 | |
1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.29 | |
3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.27 | |
2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 97.22 | |
2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.19 | |
4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.16 | |
2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 97.1 | |
3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.07 | |
3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.01 | |
3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.01 | |
3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.0 | |
3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 96.99 | |
1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.99 | |
2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 96.99 | |
2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 96.97 | |
1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 96.95 | |
1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 96.94 | |
3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 96.9 | |
1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.89 | |
3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.87 | |
2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 96.86 | |
3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 96.83 | |
3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 96.83 | |
2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.82 | |
1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.81 | |
3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 96.81 | |
3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 96.79 | |
4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.77 | |
2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 96.76 | |
3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 96.72 | |
2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 96.7 | |
3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 96.69 | |
4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 96.66 | |
1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 96.64 | |
3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 96.63 | |
1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.62 | |
3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.61 | |
3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.59 | |
3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.58 | |
1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.52 | |
4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 96.45 | |
3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.4 | |
4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 96.39 | |
1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.37 | |
2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.37 | |
3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 96.25 | |
3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.21 | |
4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 96.19 | |
2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.17 | |
2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 96.16 | |
3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.15 | |
3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 96.08 | |
3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 96.05 | |
1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 96.05 | |
1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.04 | |
3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 96.04 | |
3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 95.98 | |
2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 95.91 | |
3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 95.91 | |
4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 95.89 | |
1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 95.89 | |
3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 95.87 | |
3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 95.87 | |
1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.84 | |
1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 95.83 | |
2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.8 | |
1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 95.8 | |
1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.78 | |
3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 95.77 | |
3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 95.73 | |
3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 95.69 | |
3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 95.68 | |
3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 95.66 | |
1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.66 | |
1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.66 | |
1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 95.64 | |
1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.64 | |
3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.58 | |
3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.57 | |
1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 95.54 | |
1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.51 | |
3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.5 | |
3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 95.49 | |
2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 95.48 | |
4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.47 | |
2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 94.46 | |
2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 95.46 | |
3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 95.46 | |
3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 95.43 | |
1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 95.39 | |
2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 95.38 | |
1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 95.35 | |
3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 95.35 | |
4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 95.33 | |
2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 95.32 | |
3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.3 | |
2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 95.25 | |
3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 95.23 | |
2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 95.19 | |
4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 95.13 | |
2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 95.12 | |
3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.05 | |
3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 95.04 | |
3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 94.99 | |
1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 94.98 | |
3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 94.95 | |
3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 94.88 | |
2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 94.86 | |
3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 94.85 | |
3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 94.85 | |
2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.82 | |
2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 94.78 | |
3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 94.75 | |
3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 94.72 | |
2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 94.66 | |
2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 94.63 | |
1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 94.62 | |
3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 94.62 | |
3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 94.57 | |
3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 94.54 | |
4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 94.46 | |
1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 94.39 | |
4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 94.37 | |
3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.34 | |
1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 94.32 | |
3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 94.3 | |
4had_A | 350 | Probable oxidoreductase protein; structural genomi | 94.29 | |
2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 94.28 | |
1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 94.26 | |
1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 94.21 | |
2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 94.19 | |
1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 94.18 | |
1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 94.17 | |
3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 94.15 | |
2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 94.12 | |
1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.12 | |
3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 94.12 | |
1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 94.12 | |
1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 94.11 | |
3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 94.09 | |
3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 94.09 | |
1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 94.06 | |
3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 94.05 | |
2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.96 | |
2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 93.94 | |
3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 93.88 | |
2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 93.86 | |
4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 93.85 | |
1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 93.85 | |
2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 93.82 | |
1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.81 | |
1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.8 | |
3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 93.8 | |
3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 93.74 | |
1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 93.74 | |
3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 93.7 | |
2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 93.7 | |
2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 93.69 | |
1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 93.68 | |
3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 93.68 | |
4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 93.67 | |
1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 93.64 | |
1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.62 | |
3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 93.61 | |
3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 93.61 | |
3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 93.55 | |
3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 93.54 | |
2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 93.5 | |
1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.47 | |
4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 93.44 | |
3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 93.43 | |
2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.41 | |
1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 93.37 | |
1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.36 | |
3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 93.33 | |
4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 93.32 | |
1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 93.31 | |
2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.22 | |
3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 93.21 | |
3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.2 | |
2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 93.19 | |
1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 93.18 | |
3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 93.17 | |
1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 93.16 | |
2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 93.13 | |
2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 93.12 | |
3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 93.12 | |
1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.09 | |
4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 93.09 | |
3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 93.08 | |
2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.02 | |
3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 93.01 | |
3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 93.01 | |
1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 93.01 | |
1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.0 | |
1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 92.94 | |
2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 92.93 | |
2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.93 | |
2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 92.89 | |
3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 92.82 | |
3on5_A | 362 | BH1974 protein; structural genomics, joint center | 92.79 | |
2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 92.74 | |
3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 92.7 | |
1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 92.7 | |
3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 92.67 | |
3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 92.63 | |
2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 92.62 | |
3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 92.59 | |
3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 92.55 | |
1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.54 | |
3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.53 | |
1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 92.51 | |
4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 92.5 | |
3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 92.49 | |
3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 92.45 | |
2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 92.41 | |
3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 92.3 | |
3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 92.3 | |
1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 92.22 | |
1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 92.21 | |
3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 92.12 | |
3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 92.12 | |
4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 92.1 | |
2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.1 | |
2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 92.09 | |
3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 92.06 | |
3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 92.06 | |
3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 92.0 | |
1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 91.99 | |
1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 91.97 | |
2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 91.95 | |
3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 91.89 | |
1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 91.87 | |
3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.85 | |
4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 91.85 | |
3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 91.83 | |
3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 91.81 | |
2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 91.79 | |
3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 91.75 | |
3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 91.7 | |
1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 91.7 | |
4h31_A | 358 | Otcase, ornithine carbamoyltransferase; structural | 91.62 | |
4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 91.59 | |
2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 91.52 | |
4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.45 | |
2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 91.42 | |
3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 91.42 | |
1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 91.38 | |
1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 91.28 | |
3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.27 | |
1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 91.26 | |
4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 91.23 | |
3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 91.22 | |
3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 91.19 | |
3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 91.18 | |
3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.13 | |
2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 91.12 | |
4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 91.12 | |
3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 91.1 | |
1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 91.08 | |
2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.01 | |
4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 91.0 | |
3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 90.98 | |
3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 90.92 | |
3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 90.86 | |
3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 90.86 | |
1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 90.85 | |
3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 90.79 | |
1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 90.77 | |
4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 90.77 | |
3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 90.72 | |
2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 90.67 | |
2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 90.52 | |
2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 90.49 | |
3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 90.44 | |
2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.38 | |
3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 90.33 | |
2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 90.31 | |
2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 90.3 | |
2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 90.28 | |
3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 90.27 | |
3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 90.2 | |
4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 90.18 | |
3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 90.11 | |
4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 90.02 | |
2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 89.95 | |
1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 89.9 | |
1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 89.88 | |
2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 89.87 | |
1js1_X | 324 | Transcarbamylase; alpha/beta topology, two domains | 89.85 | |
4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 89.73 | |
3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 89.68 | |
2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 89.52 | |
1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 89.48 | |
2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 89.43 | |
3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 89.41 | |
3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 89.41 | |
2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.4 |
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
---|
Probab=100.00 E-value=2.1e-60 Score=542.27 Aligned_cols=270 Identities=28% Similarity=0.374 Sum_probs=246.9 Q ss_pred HhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccH Q psy13054 850 LLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 928 (1128) Q Consensus 850 ~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~ 928 (1128) .++++++..+. .+++++++|+++ |+||||++.|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|++. T Consensus 39 ~l~~ad~i~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~ 117 (334) T 3kb6_A 39 ELKKAELISVFVYDKLTEELLSKM-PRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLK 117 (334) T ss_dssp HHHHCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHH T ss_pred HhcCCCEEEEeCCCCCCHHHHhcC-CCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccc Confidence 34556655443 578999999997 9999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhh Q psy13054 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLC 1008 (1128) Q Consensus 929 ~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell 1008 (1128) .+++.++++.|... ......+++|||+||||+|+||+++|+++++|||+|++||++.. ....+.++.+++++|++ T Consensus 118 ~~~~~~~~~~~~~~----~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~-~~~~~~~~~~~~l~ell 192 (334) T 3kb6_A 118 RIEDRVKKLNFSQD----SEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKR-EDLKEKGCVYTSLDELL 192 (334) T ss_dssp HHHHHHHTTCCCCC----GGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHTTCEECCHHHHH T ss_pred cccccccccccccc----cccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccc-hhhhhcCceecCHHHHH Confidence 99999999998721 11234489999999999999999999999999999999987654 33445677889999999 Q ss_pred ccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC------ Q psy13054 1009 AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH------ 1082 (1128) Q Consensus 1009 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~------ 1082 (1128) ++||||++|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++.++ T Consensus 193 ~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~ 272 (334) T 3kb6_A 193 KESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGK 272 (334) T ss_dssp HHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTC T ss_pred hhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776 Q ss_pred ---------ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC Q psy13054 1083 ---------PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMI 1125 (1128) Q Consensus 1083 ---------pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~ 1125 (1128) |||++|||++|||+||+|.++++++.+.+++||.+|++|++.. T Consensus 273 ~~~~~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~ 324 (334) T 3kb6_A 273 ATDKNLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQ 324 (334) T ss_dssp CCHHHHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGG T ss_pred cccccccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCc Confidence 6889999999999999999999999999999999999998753 |
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
---|
Probab=100.00 E-value=7.5e-59 Score=530.28 Aligned_cols=281 Identities=28% Similarity=0.369 Sum_probs=257.2 Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) .+++.+.++++++.+.. .+++++++|++++|+||||++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|+ T Consensus 62 ~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~ 141 (345) T 4g2n_A 62 PSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLN 141 (345) T ss_dssp HHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHH T ss_pred HHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHH Confidence 45677888888876655 47899999998647999999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128) +.|++.++++.+++|+|.... .......+++||||||||+|+||+++|++|++|||+|++||++........ +++++ T Consensus 142 ~~R~~~~~~~~~r~g~W~~~~--~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-g~~~~ 218 (345) T 4g2n_A 142 ACRRGYEADRMVRSGSWPGWG--PTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE-GAIYH 218 (345) T ss_dssp HHHTHHHHHHHHHTTCCCCCC--TTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT-TCEEC T ss_pred HHhCHHHHHHHHHcCCCcccC--cccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc-CCeEe Confidence 999999999999999997210 001224589999999999999999999999999999999998765443222 77776 Q ss_pred -ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC Q psy13054 1003 -PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128) Q Consensus 1003 -~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128) ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++|| |.+ T Consensus 219 ~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~ 297 (345) T 4g2n_A 219 DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AID 297 (345) T ss_dssp SSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCC T ss_pred CCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCC Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 889 Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) +|||++|||++|||+||+|.++++++.+.+++||.+|++|+++.|+| T Consensus 298 ~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~~~~V 344 (345) T 4g2n_A 298 PRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVPDNLI 344 (345) T ss_dssp TTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC T ss_pred chHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCc Confidence 99999999999999999999999999999999999999999999986 |
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
---|
Probab=100.00 E-value=1e-57 Score=519.45 Aligned_cols=279 Identities=29% Similarity=0.435 Sum_probs=258.1 Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) .+++.+.++++++.+.. .+++++++|+++ |+||||++.|+|+||||+++|+++||.|+|+|++++.+||||+++++|+ T Consensus 36 ~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~ 114 (330) T 4e5n_A 36 REEILRRCRDAQAMMAFMPDRVDADFLQAC-PELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVG 114 (330) T ss_dssp HHHHHHHHTTCSEEEECTTCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHH T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHhhC-CCCcEEEECCCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHH Confidence 45566777777766553 568999999997 9999999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCC--cccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGP--NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA 999 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~--~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~ 999 (1128) +.|++..+++.+++|+|. .|.+ ...+++|+||||||+|+||+.+|++|++|||+|++||++..+.. ..+.|+ T Consensus 115 ~~R~~~~~~~~~~~g~w~-----~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~ 189 (330) T 4e5n_A 115 LGRHLRAADAFVRSGKFR-----GWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGL 189 (330) T ss_dssp HHTTHHHHHHHHHTTCCC-----SCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTE T ss_pred HHhChHHHHHHHHhCCcc-----ccCccccCCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCc Confidence 999999999999999997 2332 23489999999999999999999999999999999998764443 456677 Q ss_pred cccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC--- Q psy13054 1000 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE--- 1076 (1128) Q Consensus 1000 ~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E--- 1076 (1128) .++++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+|+||+||||++| T Consensus 190 ~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~ 269 (330) T 4e5n_A 190 RQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWA 269 (330) T ss_dssp EECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTT T ss_pred eeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEeccccccccc Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ----CCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1077 ----PLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1077 ----Pl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |+|.++|||++|||++|||+||+|.++++++.+.+++||.+|++|+++.|.| T Consensus 270 ~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 325 (330) T 4e5n_A 270 RADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 325 (330) T ss_dssp CTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTSCCTTBS T ss_pred ccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCcc Confidence 9999999999999999999999999999999999999999999999998875 |
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
---|
Probab=100.00 E-value=9.5e-58 Score=517.08 Aligned_cols=294 Identities=26% Similarity=0.334 Sum_probs=257.9 Q ss_pred hhhhhhh-cccCccccccCCcEEEEecCCCCchHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChh Q psy13054 814 EWALKQT-HIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELH 892 (1128) Q Consensus 814 ~~~~~~l-~~~~p~~~~l~~a~v~i~~~~~~~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~ 892 (1128) +++.+.+ ....|++ ++ ..+ ...++..+.++++++.+. ..++++++|+++ |+||||++.|+|+|++|++ T Consensus 16 ~~~~~~L~~~~~p~~------~~--~~~-~~~~~~~~~~~~ad~li~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 84 (324) T 3hg7_A 16 AHYERLLKAAHLPHL------RI--LRA-DNQSDAEKLIGEAHILMA-EPARAKPLLAKA-NKLSWFQSTYAGVDVLLDA 84 (324) T ss_dssp HHHHHHHHHSCCTTE------EE--EEC-SSHHHHHHHGGGCSEEEE-CHHHHGGGGGGC-TTCCEEEESSSCCGGGSCT T ss_pred HHHHHHHhhccCCCe------EE--EeC-CChhHHHHHhCCCEEEEE-CCCCCHHHHhhC-CCceEEEECCCCCCccChH Confidence 4556666 5566665 22 222 234567778888887653 445678899987 9999999999999999999 Q ss_pred hhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHH Q psy13054 893 EIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETA 972 (1128) Q Consensus 893 a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA 972 (1128) ++++ ||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.. ....+++|+||||||+|.||+++| T Consensus 85 ~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-------~~~~~l~g~tvGIIGlG~IG~~vA 156 (324) T 3hg7_A 85 RCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS-------HPYQGLKGRTLLILGTGSIGQHIA 156 (324) T ss_dssp TSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC-------CCCCCSTTCEEEEECCSHHHHHHH T ss_pred HHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcC-------CCCcccccceEEEEEECHHHHHHH Confidence 8865 99999999999999999999999999999999999999999972 234589999999999999999999 Q ss_pred HHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccC Q psy13054 973 KLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLD 1052 (1128) Q Consensus 973 ~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVd 1052 (1128) ++|++|||+|++||++..............+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++|| T Consensus 157 ~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vd 236 (324) T 3hg7_A 157 HTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236 (324) T ss_dssp HHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBC T ss_pred HHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhC Confidence 99999999999999776433322222345689999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1053 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1053 e~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) ++||+++|++|+|+||+||||++||+|.++|||++|||++|||+||+|.+ +++.+.+++||.+|++|+++.|.| T Consensus 237 e~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~~~V 310 (324) T 3hg7_A 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKI 310 (324) T ss_dssp HHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBC T ss_pred HHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCcceE Confidence 99999999999999999999999999999999999999999999999987 589999999999999999999876 |
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
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Probab=100.00 E-value=3.7e-57 Score=517.84 Aligned_cols=288 Identities=27% Similarity=0.414 Sum_probs=259.0 Q ss_pred CcEEEEecCCC-CchHHHHHhhccceeEEee---cCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCC Q psy13054 832 GATVGIVGLGN-IGLETAKLLKAFKVSKILY---TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHI 907 (1128) Q Consensus 832 ~a~v~i~~~~~-~~~e~~~~l~~~~~~~~~~---~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~ 907 (1128) ++++.+..... ..+++.+.++++++++... .++++++|+++ |+||+|++.|+|+||||+++|+++||.|+|+|++ T Consensus 40 g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~-p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~~g~ 118 (351) T 3jtm_A 40 GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-KNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGS 118 (351) T ss_dssp TCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHC-SSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTT T ss_pred CCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhC-CCCeEEEEeCeeecccCHHHHHhcCeeEEECCCc Confidence 45555554332 3457788888888765432 45899999997 9999999999999999999999999999999999 Q ss_pred ChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeC Q psy13054 908 SSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 987 (1128) Q Consensus 908 ~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~ 987 (1128) |+.+||||+++++|++.|++..+++.+++|+|.... ......+++|+||||||+|+||+.+|++|++|||+|++||+ T Consensus 119 ~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~---~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr 195 (351) T 3jtm_A 119 NVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAG---IAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDR 195 (351) T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHH---HHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECS T ss_pred CchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCcccc---ccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCC Confidence 999999999999999999999999999999997311 01123489999999999999999999999999999999997 Q ss_pred CCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc Q psy13054 988 RRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 988 ~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128) +....+ ..+.|+..+ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+| T Consensus 196 ~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i 275 (351) T 3jtm_A 196 LQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHI 275 (351) T ss_dssp SCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSE T ss_pred CccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCc Confidence 654443 556677776 899999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC Q psy13054 1066 GGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1066 ~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) +||+||||++||+|.++|||++|||++|||+||+|.+++.++.+.+.+||.+|++|++ T Consensus 276 ~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~ 333 (351) T 3jtm_A 276 GGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGED 333 (351) T ss_dssp EEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCC T ss_pred cEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCC Confidence 9999999999999999999999999999999999999999999999999999999996 |
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
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Probab=100.00 E-value=5.6e-57 Score=516.86 Aligned_cols=296 Identities=25% Similarity=0.324 Sum_probs=261.9 Q ss_pred cCCcEEEEecCCC-CchHHHHHhhccceeEEe--ecCCChhhhhcCCCCccEEEEccccC----CcCChhhhhhCCcEEE Q psy13054 830 LKGATVGIVGLGN-IGLETAKLLKAFKVSKIL--YTSRNKVKTPKRTENLKVITTFSVGY----DHLELHEIKARGIRVG 902 (1128) Q Consensus 830 l~~a~v~i~~~~~-~~~e~~~~l~~~~~~~~~--~~~i~~~~l~~~~~~LK~I~~~~aGv----d~idl~a~~~~GI~V~ 902 (1128) ++++++.+..... ..+++.+.++++++.++. .+++++++|+++ |+||+|++.|+|+ |+||+++|+++||.|+ T Consensus 24 l~~~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~-~~Lk~I~~~g~G~~~~~d~id~~~a~~~gI~V~ 102 (352) T 3gg9_A 24 LQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRL-PKLKIISQTGRVSRDAGGHIDLEACTDKGVVVL 102 (352) T ss_dssp GTTSEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTC-TTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEE T ss_pred hcCceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhC-CCCeEEEEeCcccCCccCcccHHHHHhCCeEEE Confidence 3445555544322 345677888888876653 478999999997 9999999999999 9999999999999999 Q ss_pred EcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccc--cccC---CcccccCCCeEEEEEcChhhHHHHHHHhh Q psy13054 903 SVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQT--HIIG---PNIMGLKGATVGIVGLGNIGLETAKLLKA 977 (1128) Q Consensus 903 n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~--~~~~---~~~~~L~gktvGIIG~G~IG~~vA~~l~a 977 (1128) |+||+ +.+||||+++++|++.|++..+++.+++|+|..... ..|. ....+++||||||||+|.||+++|++|++ T Consensus 103 n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~ 181 (352) T 3gg9_A 103 EGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRA 181 (352) T ss_dssp CCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHH T ss_pred ECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHHHHHh Confidence 99999 999999999999999999999999999999974210 0111 23458999999999999999999999999 Q ss_pred CCCEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHH Q psy13054 978 FKVSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEAL 1056 (1128) Q Consensus 978 fG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL 1056 (1128) |||+|++||++.......+.|++++ ++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++|| T Consensus 182 ~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL 261 (352) T 3gg9_A 182 FGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGM 261 (352) T ss_dssp TTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHH T ss_pred CCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHH Confidence 9999999997653333556788777 999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1057 VEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1057 ~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) +++|++|+|+||+||||++||+|.++|||++|||++|||+||+|.++++++.+.+++||.+|++|+|+ |.| T Consensus 262 ~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~p~-~~V 332 (352) T 3gg9_A 262 VTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVD-SVA 332 (352) T ss_dssp HHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCT-TBS T ss_pred HHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-ccc Confidence 99999999999999999999999999999999999999999999999999999999999999999875 543 |
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
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Probab=100.00 E-value=5.9e-57 Score=517.45 Aligned_cols=265 Identities=23% Similarity=0.351 Sum_probs=241.4 Q ss_pred eecCCChhhhhcCCCCccEEEEc-cccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCC Q psy13054 860 LYTSRNKVKTPKRTENLKVITTF-SVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGE 938 (1128) Q Consensus 860 ~~~~i~~~~l~~~~~~LK~I~~~-~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~ 938 (1128) ..+++++++|+++ |+||+|++. |+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|+ T Consensus 82 ~~~~i~~~~l~~~-p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~ 160 (365) T 4hy3_A 82 GQPPLSAETLARM-PALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGT 160 (365) T ss_dssp ECCCCCHHHHTTC-TTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTC T ss_pred eCCCCCHHHHhhC-CCCeEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCC Confidence 4578999999997 999999975 88999999999999999999999999999999999999999999999999999999 Q ss_pred CccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEec Q psy13054 939 WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 939 w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~l 1018 (1128) |.... .......+++||||||||+|+||+.+|+++++|||+|++||++.......+.|+...++++++++||+|++|+ T Consensus 161 ~~w~~--~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~ 238 (365) T 4hy3_A 161 ELWGG--EGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVA 238 (365) T ss_dssp CCCSS--SSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECS T ss_pred ccccc--cccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcC Confidence 54110 0012345899999999999999999999999999999999987543335567888889999999999999999 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCC Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag 1098 (1128) |++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+ ||||||++||+|.++|||++|||++|||+|| T Consensus 239 Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~ 317 (365) T 4hy3_A 239 AVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAG 317 (365) T ss_dssp CSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSS T ss_pred cCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCcccc Confidence 999999999999999999999999999999999999999999999998 8999999999999999999999999999999 Q ss_pred CcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1099 ATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1099 ~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) +|.++++++.+.+++||.+|++|+|+.+.| T Consensus 318 ~t~e~~~~~~~~~~~ni~~~~~G~~~~~~v 347 (365) T 4hy3_A 318 ALDSAFKKMGDMVLEDMDLMDRGLPPMRCK 347 (365) T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCCCSSE T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCccccc Confidence 999999999999999999999999988754 |
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
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Probab=100.00 E-value=6.2e-57 Score=514.07 Aligned_cols=280 Identities=25% Similarity=0.310 Sum_probs=250.7 Q ss_pred CchHHHHHhhccceeEEe-ecCCChh-hhhcCC-CCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHH Q psy13054 843 IGLETAKLLKAFKVSKIL-YTSRNKV-KTPKRT-ENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGL 919 (1128) Q Consensus 843 ~~~e~~~~l~~~~~~~~~-~~~i~~~-~l~~~~-~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alal 919 (1128) ..+++.+.+++++++++. .++++++ +|++++ ++||+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++ T Consensus 35 ~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l 114 (343) T 2yq5_A 35 LTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQ 114 (343) T ss_dssp CSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHH T ss_pred CCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHH Confidence 345666677777766554 4789999 999862 3699999999999999999999999999999999999999999999 Q ss_pred HHHHHhccHHHHHHHH-cCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC Q psy13054 920 AIAVSRRFQEGRKCIT-SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALG 998 (1128) Q Consensus 920 iL~~~R~i~~~~~~~~-~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g 998 (1128) +|++.|++..+++.++ +|+|... ......+++||||||||+|.||+.+|++|++|||+|++||++.... .+.+ T Consensus 115 ~L~~~R~~~~~~~~~~~~g~~~w~----~~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~ 188 (343) T 2yq5_A 115 AMYLLRKIGEFRYRMDHDHDFTWP----SNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--FEPF 188 (343) T ss_dssp HHHHHHTHHHHHHHHHHHCCCCCC----GGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--GTTT T ss_pred HHHHHhchHHHHHHHHHcCCcccc----cCCCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--hhcc Confidence 9999999999999999 9987521 0123458999999999999999999999999999999999876542 2334 Q ss_pred CcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC- Q psy13054 999 AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP- 1077 (1128) Q Consensus 999 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP- 1077 (1128) +.++++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++|| T Consensus 189 ~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~ 268 (343) T 2yq5_A 189 LTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESS 268 (343) T ss_dssp CEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGG T ss_pred ccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCC Confidence 6677999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred -CCCC-----------CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1078 -LPAD-----------HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1078 -l~~~-----------~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) +|.+ +|||++|||++|||+||+|.++++++.+.+++||.+|++|+++.|+| T Consensus 269 ~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~~~~v 331 (343) T 2yq5_A 269 YFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSIV 331 (343) T ss_dssp TTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC T ss_pred ccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHHHHHcCCCCCceE Confidence 5666 58999999999999999999999999999999999999999999876 |
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
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Probab=100.00 E-value=1.2e-56 Score=521.01 Aligned_cols=277 Identities=26% Similarity=0.377 Sum_probs=247.5 Q ss_pred CchHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHH Q psy13054 843 IGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 (1128) Q Consensus 843 ~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL 921 (1128) ..+++.+.+++++++.+. .+++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+|++|+++||||+++++| T Consensus 48 ~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L 126 (416) T 3k5p_A 48 DKADLIKAISSAHIIGIRSRTQLTEEIFAAA-NRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEII 126 (416) T ss_dssp CHHHHHHHHTTCSEEEECSSCCBCHHHHHHC-TTCCEEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHH T ss_pred CHHHHHHHccCCEEEEEcCCCCCCHHHHHhC-CCcEEEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHH Confidence 456678888888876544 468999999997 999999999999999999999999999999999999999999999999 Q ss_pred HHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc- Q psy13054 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ- 1000 (1128) Q Consensus 922 ~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~- 1000 (1128) ++.|++..+++.+++|+|.+. .....+++|||+||||+|+||+++|+++++|||+|++||+...... .+.. T Consensus 127 ~l~R~i~~~~~~~~~g~W~~~-----~~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~---~~~~~ 198 (416) T 3k5p_A 127 MLMRRIFPRSVSAHAGGWEKT-----AIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY---GNVKP 198 (416) T ss_dssp HHHTTHHHHHHHHHTTCCCCC-----CTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB---TTBEE T ss_pred HHhcccHHHHHhhhccccccc-----CCCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc---cCcEe Confidence 999999999999999999831 2234589999999999999999999999999999999997643221 1233 Q ss_pred ccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC Q psy13054 1001 LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA 1080 (1128) Q Consensus 1001 ~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~ 1080 (1128) ..+++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. T Consensus 199 ~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~ 278 (416) T 3k5p_A 199 AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASN 278 (416) T ss_dssp CSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSST T ss_pred cCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCc Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999987 Q ss_pred C----CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1081 D----HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1081 ~----~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) + +|||++|||++|||+||+|.|++++++..+++||.+|+.|+...+.| T Consensus 279 ~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~~~V 330 (416) T 3k5p_A 279 GERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVGAV 330 (416) T ss_dssp TSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCTTBS T ss_pred ccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCcee Confidence 5 79999999999999999999999999999999999999888777654 |
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
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Probab=100.00 E-value=4.4e-57 Score=512.30 Aligned_cols=258 Identities=27% Similarity=0.357 Sum_probs=237.2 Q ss_pred CCChhhh-hcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHH-HHHHHcCCCc Q psy13054 863 SRNKVKT-PKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG-RKCITSGEWA 940 (1128) Q Consensus 863 ~i~~~~l-~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~-~~~~~~g~w~ 940 (1128) ++ +++| +++ |+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|++..+ .+.+++|.|. T Consensus 50 ~~-~~~l~~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~ 127 (324) T 3evt_A 50 LL-KTILARPT-NQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWA 127 (324) T ss_dssp HH-HHHHHSTT-CCCCEEECSSSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSS T ss_pred Ch-HHHHHhhC-CCceEEEECCccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcc Confidence 45 7888 565 999999999999999999999999999999999999999999999999999999999 9999999997 Q ss_pred cccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCC Q psy13054 941 LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 941 ~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPl 1020 (1128) .. ....+++||||||||+|.||+++|++|++|||+|++||++..............++++++++||+|++|+|+ T Consensus 128 ~~------~~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPl 201 (324) T 3evt_A 128 LP------MTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPL 201 (324) T ss_dssp CS------SCCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCC T ss_pred cC------CCCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCC Confidence 31 134589999999999999999999999999999999997765443222223456899999999999999999 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCc Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSAT 1100 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t 1100 (1128) |++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||+|.++|||++|||++|||+||+| T Consensus 202 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t 281 (324) T 3evt_A 202 TPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQI 281 (324) T ss_dssp CGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCC T ss_pred chHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccCh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHcC-CCCCCCC Q psy13054 1101 KAVRDEKSSTSAENIIRGYKG-EPMIYEL 1128 (1128) Q Consensus 1101 ~e~~~~~~~~~~~nl~~~l~G-~~l~~~v 1128 (1128) .++.+++.+.+++||.+|++| +++.|.| T Consensus 282 ~~~~~~~~~~~~~nl~~~l~~~~~~~n~V 310 (324) T 3evt_A 282 AHFRATVFPIFAANFAQFVKDGTLVRNQV 310 (324) T ss_dssp CCHHHHHHHHHHHHHHHHHHHSCCCSCBC T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCceE Confidence 999999999999999999965 4677765 |
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
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Probab=100.00 E-value=4.1e-56 Score=506.80 Aligned_cols=275 Identities=28% Similarity=0.389 Sum_probs=224.2 Q ss_pred hHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH Q psy13054 845 LETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128) Q Consensus 845 ~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128) ++..+.+++++++++. .+++++++|+++ |+||||++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++ T Consensus 63 ~~~~~~~~~~d~li~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~ 141 (340) T 4dgs_A 63 PALEAALPSIRAVATGGGAGLSNEWMEKL-PSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAV 141 (340) T ss_dssp HHHHHHGGGCCEEEEETTTCBCHHHHHHC-SSCCEEEEESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHH T ss_pred HHHHHHhCCcEEEEEcCCCCCCHHHHhhC-CCCEEEEECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHH Confidence 3455555677765543 468999999997 99999999999999999999999999999999999999999999999999 Q ss_pred HhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-cc Q psy13054 924 SRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LV 1002 (1128) Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~ 1002 (1128) .|++.++++.+++|+|.+.. ..+...+++||||||||+|+||+++|+++++|||+|++||++.... .++. .. T Consensus 142 ~R~~~~~~~~~~~g~W~~~~---~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~----~~~~~~~ 214 (340) T 4dgs_A 142 LRRVGDGDRLVREGRWAAGE---QLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG----VDWIAHQ 214 (340) T ss_dssp HTTHHHHHHHHHTTCC---------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT----SCCEECS T ss_pred HhChHHHHHHHhcCCccccc---CcCccccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc----cCceecC Confidence 99999999999999997310 0122458999999999999999999999999999999998765542 2333 35 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) +++|++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|+||+||||++||++. + T Consensus 215 sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~ 293 (340) T 4dgs_A 215 SPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-S 293 (340) T ss_dssp SHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCC-S T ss_pred CHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-c Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999886 5 Q ss_pred ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1083 PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1083 pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |||++|||++|||+||+|.++++++.+.+++||.+|++|+++.|.| T Consensus 294 ~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~V 339 (340) T 4dgs_A 294 EFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTV 339 (340) T ss_dssp HHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCCTTBC T ss_pred chhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCc Confidence 9999999999999999999999999999999999999999999876 |
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
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Probab=100.00 E-value=1.1e-55 Score=514.82 Aligned_cols=277 Identities=25% Similarity=0.358 Sum_probs=243.1 Q ss_pred CchHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHH Q psy13054 843 IGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 (1128) Q Consensus 843 ~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL 921 (1128) ..+++.+.+++++++.+. .+++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||++++|| T Consensus 37 ~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L 115 (404) T 1sc6_A 37 DDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELL 115 (404) T ss_dssp CHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHH T ss_pred CHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCcEEEECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHH Confidence 345566777788866544 368999999997 999999999999999999999999999999999999999999999999 Q ss_pred HHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc Q psy13054 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001 (1128) Q Consensus 922 ~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~ 1001 (1128) ++.|+++++++.+++|+|.+. .....+++|||+||||+|+||+.+|+++++|||+|++||++..... .++.. T Consensus 116 ~~~R~i~~~~~~~~~g~W~~~-----~~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---~~~~~ 187 (404) T 1sc6_A 116 LLLRGVPEANAKAHRGVGNKL-----AAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL---GNATQ 187 (404) T ss_dssp HHHHTHHHHHHHHHHTCCC----------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC---TTCEE T ss_pred HHHhChHHHHHHHHcCCcccc-----CCCccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhcc---CCcee Confidence 999999999999999999731 1234589999999999999999999999999999999997654321 13444 Q ss_pred c-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC Q psy13054 1002 V-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA 1080 (1128) Q Consensus 1002 ~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~ 1080 (1128) + +++|++++||+|++|+|++++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||++. T Consensus 188 ~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~ 267 (404) T 1sc6_A 188 VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATN 267 (404) T ss_dssp CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC-------- T ss_pred cCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCc Confidence 4 899999999999999999999999999999999999999999999999999999999999999999999999999874 Q ss_pred ----CCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1081 ----DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1081 ----~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) ++|||++|||++|||+||+|.|++++++..+++|+.+|+.|+++.|.| T Consensus 268 ~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~v 319 (404) T 1sc6_A 268 SDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 319 (404) T ss_dssp -CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTBS T ss_pred cccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCccee Confidence 579999999999999999999999999999999999999998887764 |
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
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Probab=100.00 E-value=2.5e-56 Score=508.63 Aligned_cols=265 Identities=26% Similarity=0.361 Sum_probs=228.6 Q ss_pred hcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchH Q psy13054 77 KLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQ 156 (1128) Q Consensus 77 ~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~ 156 (1128) .++++|+++++..+++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+||+++++||||++++||+++|++. T Consensus 39 ~l~~ad~i~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~ 117 (334) T 3kb6_A 39 ELKKAELISVFVYDKLTEELLSKM-PRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLK 117 (334) T ss_dssp HHHHCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHH T ss_pred HhcCCCEEEEeCCCCCCHHHHhcC-CCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccc Confidence 357899999988889999999987 8999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccc Q psy13054 157 QRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTD 236 (1128) Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~ 236 (1128) .+++.++++ +|+ .|. ...+..+.+||+||+|+|+ T Consensus 118 ~~~~~~~~~-~~~---------~~~------------------~~~~~~l~g~tvGIiG~G~------------------ 151 (334) T 3kb6_A 118 RIEDRVKKL-NFS---------QDS------------------EILARELNRLTLGVIGTGR------------------ 151 (334) T ss_dssp HHHHHHHTT-CCC---------CCG------------------GGCBCCGGGSEEEEECCSH------------------ T ss_pred ccccccccc-ccc---------ccc------------------ccccceecCcEEEEECcch------------------ Confidence 988766553 221 111 1223445678999999973 Q ss_pred cccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHHH Q psy13054 237 TNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDT 316 (1128) Q Consensus 237 ~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLde 316 (1128) ||+++++++++|++ ++++|+++.++...+.++++++|+| T Consensus 152 ---------------IG~~va~~~~~fg~--------------------------~v~~~d~~~~~~~~~~~~~~~~l~e 190 (334) T 3kb6_A 152 ---------------IGSRVAMYGLAFGM--------------------------KVLCYDVVKREDLKEKGCVYTSLDE 190 (334) T ss_dssp ---------------HHHHHHHHHHHTTC--------------------------EEEEECSSCCHHHHHTTCEECCHHH T ss_pred ---------------HHHHHHHhhcccCc--------------------------eeeecCCccchhhhhcCceecCHHH Confidence 68888888887754 3456666555544556788999999 Q ss_pred HhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCC---- Q psy13054 317 LCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH---- 392 (1128) Q Consensus 317 Ll~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~---- 392 (1128) ||++|||||+|||||++|+||||++.|++||+|++|||||||++|||+||++||++|+|+|||||||++||++.+| T Consensus 191 ll~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~ 270 (334) T 3kb6_A 191 LLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTE 270 (334) T ss_dssp HHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGG T ss_pred HHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccc Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988776 Q ss_pred -----------CcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHHHh Q psy13054 393 -----------PLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELFDK 435 (1128) Q Consensus 393 -----------pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~~~ 435 (1128) |||++||| ++|||++++|.+ ...++|+.+|+++...+ T Consensus 271 ~~~~~~~~~~~~L~~~~nv------ilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~ 324 (334) T 3kb6_A 271 GKATDKNLKILELACKDNV------IITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQ 324 (334) T ss_dssp TCCCHHHHHHHHHHTSTTE------EECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGG T ss_pred cccccccccchhhccCCCE------EECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCc Confidence 68899999 999999999975 45678899988876443 |
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
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Probab=100.00 E-value=8.7e-55 Score=503.92 Aligned_cols=280 Identities=25% Similarity=0.379 Sum_probs=254.4 Q ss_pred hHHHHHhhccceeEEe---ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHH Q psy13054 845 LETAKLLKAFKVSKIL---YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 (1128) Q Consensus 845 ~e~~~~l~~~~~~~~~---~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL 921 (1128) +++.+.++++++.+.. .+++++++|+++ |+||||++.++|+||||+++|+++||.|+|+|++++.+||||++++|| T Consensus 81 ~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL 159 (393) T 2nac_A 81 SVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMIL 159 (393) T ss_dssp SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHH T ss_pred HHHHHhccCCCEEEEcCccCCCCCHHHHhhC-CCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHH Confidence 3566777777765443 247899999997 999999999999999999999999999999999999999999999999 Q ss_pred HHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc Q psy13054 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ 1000 (1128) Q Consensus 922 ~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~ 1000 (1128) ++.|++..+++.+++|+|..... .....+++|+||||||+|+||+.+|++|++|||+|++||++..... ..+.|+. T Consensus 160 ~~~R~~~~~~~~~~~g~W~~~~~---~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~ 236 (393) T 2nac_A 160 SLVRNYLPSHEWARKGGWNIADC---VSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLT 236 (393) T ss_dssp HHHTTHHHHHHHHHTTCCCHHHH---HTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCE T ss_pred HHHhccHHHHHHHHcCCCCcccc---ccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCce Confidence 99999999999999999973110 0123489999999999999999999999999999999997765443 4556776 Q ss_pred c-cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCC Q psy13054 1001 L-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 1079 (1128) Q Consensus 1001 ~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~ 1079 (1128) . .++++++++||+|++|+|++++|+++|+++.|++||+|++|||+|||+++|++||+++|++|+|+||+||||++||++ T Consensus 237 ~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~ 316 (393) T 2nac_A 237 WHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAP 316 (393) T ss_dssp ECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCC T ss_pred ecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCC Confidence 5 489999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1080 ADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1080 ~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) .++|||++|||++|||+||+|.++++++.+.+++||++|++|+++.|+| T Consensus 317 ~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~ 365 (393) T 2nac_A 317 KDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEY 365 (393) T ss_dssp TTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGG T ss_pred CCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCccee Confidence 9999999999999999999999999999999999999999999998864 |
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
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Probab=100.00 E-value=6.3e-55 Score=497.75 Aligned_cols=276 Identities=22% Similarity=0.249 Sum_probs=249.2 Q ss_pred hHHHHHhhccceeEEe-ecCCChhhhhcCCCC--ccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHH Q psy13054 845 LETAKLLKAFKVSKIL-YTSRNKVKTPKRTEN--LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 (1128) Q Consensus 845 ~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~--LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL 921 (1128) +++.+.++++++.++. .+++++++|+++ |+ ||||++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++| T Consensus 38 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L 116 (333) T 1j4a_A 38 PETVALAKGADGVVVYQQLDYIAETLQAL-ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAA 116 (333) T ss_dssp TTTGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHH T ss_pred HHHHHHhcCCcEEEEcCCCCCCHHHHHhc-cccCCeEEEECCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHH Confidence 3555566666655543 367899999997 77 9999999999999999999999999999999999999999999999 Q ss_pred HHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc Q psy13054 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001 (1128) Q Consensus 922 ~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~ 1001 (1128) ++.|++..+++.+++|.|... .....+++|+||||||+|+||+.+|+++++|||+|++||++..+. ..+ .+.+ T Consensus 117 ~~~R~~~~~~~~~~~g~w~~~-----~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~~ 189 (333) T 1j4a_A 117 RILRQDKAMDEKVARHDLRWA-----PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE-LEK-KGYY 189 (333) T ss_dssp HHHHTHHHHHHHHHTTBCCCT-----TCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHH-TTCB T ss_pred HHHcCHHHHHHHHHcCCCccC-----CcccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh-HHh-hCee Confidence 999999999999999999621 123348999999999999999999999999999999999876543 222 3556 Q ss_pred c-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC--C Q psy13054 1002 V-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP--L 1078 (1128) Q Consensus 1002 ~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP--l 1078 (1128) + ++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++|| + T Consensus 190 ~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l 269 (333) T 1j4a_A 190 VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIF 269 (333) T ss_dssp CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTT T ss_pred cCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCcc Confidence 6 899999999999999999999999999999999999999999999999999999999999999999999999999 5 Q ss_pred CCCC-----------ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1079 PADH-----------PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1079 ~~~~-----------pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |.++ |||++|||++|||+||+|.++++++.+.+++||.+|++|+++.|.| T Consensus 270 ~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 330 (333) T 1j4a_A 270 NEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330 (333) T ss_dssp TSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC T ss_pred ccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCCCccc Confidence 6654 6999999999999999999999999999999999999999998875 |
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
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Probab=100.00 E-value=7.2e-55 Score=496.59 Aligned_cols=277 Identities=28% Similarity=0.406 Sum_probs=248.8 Q ss_pred CchHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHH Q psy13054 843 IGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 (1128) Q Consensus 843 ~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL 921 (1128) ..+++.+.++++++..+. .+++++++|+++ |+||||++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++| T Consensus 57 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L 135 (335) T 2g76_A 57 SKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIM 135 (335) T ss_dssp CHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-SSCCEEEESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHH T ss_pred CHHHHHHHhcCceEEEEcCCCCCCHHHHhhC-CCCcEEEECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHH Confidence 345677778888866543 357999999997 999999999999999999999999999999999999999999999999 Q ss_pred HHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc Q psy13054 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001 (1128) Q Consensus 922 ~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~ 1001 (1128) ++.|++..+++.+++|.|.+. .....+++|+||||||+|.||+.+|++|++|||+|++||++..+....+.|+.. T Consensus 136 ~~~R~~~~~~~~~~~g~W~~~-----~~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~ 210 (335) T 2g76_A 136 CLARQIPQATASMKDGKWERK-----KFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQ 210 (335) T ss_dssp HHHHTHHHHHHHHHTTCCCTG-----GGCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEE T ss_pred HHHhchHHHHHHHHcCCCCcc-----CCCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCcee Confidence 999999999999999999721 112348999999999999999999999999999999999876654355667777 Q ss_pred cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC Q psy13054 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128) Q Consensus 1002 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128) .++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||+.|| +.+ T Consensus 211 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP-~~~ 289 (335) T 2g76_A 211 LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRD 289 (335) T ss_dssp CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSS-CSC T ss_pred CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCC-CCC Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999 678 Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIY 1126 (1128) Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~ 1126 (1128) +|||++|||++|||+||+|.++++++.+.+++||.+|++|+++.| T Consensus 290 ~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~n 334 (335) T 2g76_A 290 RALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTG 334 (335) T ss_dssp CHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC------- T ss_pred chHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC Confidence 999999999999999999999999999999999999999999876 |
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
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Probab=100.00 E-value=3.6e-55 Score=495.12 Aligned_cols=288 Identities=20% Similarity=0.247 Sum_probs=245.7 Q ss_pred hhhhhhhcccCccccccCCcEEEEecCCCCchHHHHHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcC-C-h Q psy13054 814 EWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHL-E-L 891 (1128) Q Consensus 814 ~~~~~~l~~~~p~~~~l~~a~v~i~~~~~~~~e~~~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~i-d-l 891 (1128) +++.+.+....|+++ + ..|... -.+++++.. ....++++|+. |+||||++.|+|+|++ | + T Consensus 16 ~~~~~~l~~~~p~~~------~--~~~~~~------~~~~ad~~i--~~~~~~~~l~~--~~Lk~I~~~~aG~d~i~d~~ 77 (315) T 3pp8_A 16 AWWVNALEKALPHAR------V--REWKVG------DNNPADYAL--VWQPPVEMLAG--RRLKAVFVLGAGVDAILSKL 77 (315) T ss_dssp HHHHHHHHHHSTTEE------E--EECCTT------CCSCCSEEE--ESSCCHHHHTT--CCCSEEEESSSCCHHHHHHH T ss_pred HHHHHHHHHHCCCCE------E--EecCCC------CccCcEEEE--ECCCCHHHhCC--CCceEEEECCEecccccchh Confidence 455666776667652 2 222111 123444433 34568899986 9999999999999999 7 8 Q ss_pred hh---hhhCCcEEEEcCCCC-hhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChh Q psy13054 892 HE---IKARGIRVGSVGHIS-SDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNI 967 (1128) Q Consensus 892 ~a---~~~~GI~V~n~p~~~-a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~I 967 (1128) ++ +.++||.|+|+++++ +.+||||+++++|++.|++..+++.+++|.|.. ....+++|+||||||+|+| T Consensus 78 ~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-------~~~~~l~g~tvGIiG~G~I 150 (315) T 3pp8_A 78 NAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKP-------LPEYTREEFSVGIMGAGVL 150 (315) T ss_dssp HHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC-------CCCCCSTTCCEEEECCSHH T ss_pred hhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCC-------CCCCCcCCCEEEEEeeCHH Confidence 87 788999999999874 899999999999999999999999999999972 1345899999999999999 Q ss_pred hHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCC Q psy13054 968 GLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 968 G~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) |+++|++|++|||+|++||++..............++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|| T Consensus 151 G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aR 230 (315) T 3pp8_A 151 GAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLAR 230 (315) T ss_dssp HHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSC T ss_pred HHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCC Confidence 99999999999999999997665432111111125899999999999999999999999999999999999999999999 Q ss_pred CcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC Q psy13054 1048 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYE 1127 (1128) Q Consensus 1048 G~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~ 1127 (1128) |++||++||+++|++|+|+||+||||++||+|.++|||++|||++|||+||+|.+ +++.+.+++||.+|++|+++.|. T Consensus 231 G~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~~~~~~ 308 (315) T 3pp8_A 231 GVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEPVTGQ 308 (315) T ss_dssp GGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTCCCCCB T ss_pred ChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCCCCCce Confidence 9999999999999999999999999999999999999999999999999999986 68999999999999999999987 Q ss_pred C Q psy13054 1128 L 1128 (1128) Q Consensus 1128 v 1128 (1128) | T Consensus 309 V 309 (315) T 3pp8_A 309 V 309 (315) T ss_dssp C T ss_pred E Confidence 6 |
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
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Probab=100.00 E-value=1.1e-54 Score=495.87 Aligned_cols=304 Identities=25% Similarity=0.343 Sum_probs=253.9 Q ss_pred ccEEEEEeeccccccccccccccccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHh Q psy13054 19 IEKLLLIVQNSHGISSFSRQGSRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLD 98 (1128) Q Consensus 19 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~ 98 (1128) |+|+|++. .++++.++.|+ +.+++.++.. ....+.+++.+.++++|+++++..+++++++|+ T Consensus 28 ~~kvlv~~---------------~~~~~~~~~l~--~~~~v~~~~~-~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~ 89 (345) T 4g2n_A 28 IQKAFLCR---------------RFTPAIEAELR--QRFDLEVNLE-DTVLTPSGIASRAHGAEVLFVTATEAITAEVIR 89 (345) T ss_dssp CCEEEESS---------------CCCHHHHHHHH--HHSEEEECTT-CCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHH T ss_pred CCEEEEeC---------------CCCHHHHHHHH--ccCCEEEecC-CCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHH Confidence 45777776 57777788776 4588887653 335678999999999999999877899999999 Q ss_pred ccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCC Q psy13054 99 RSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDT 178 (1128) Q Consensus 99 ~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~ 178 (1128) +++|+||+|+++|+||||||+++|+++||.|+|+||+++++||||++++||+++|++..+++.++++ .|. T Consensus 90 ~~~~~Lk~I~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g-~W~--------- 159 (345) T 4g2n_A 90 KLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSG-SWP--------- 159 (345) T ss_dssp HTTTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-CCC--------- T ss_pred hhcCCceEEEEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcC-CCc--------- Confidence 8657999999999999999999999999999999999999999999999999999999998877653 231 Q ss_pred CCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhh Q psy13054 179 KFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINN 258 (1128) Q Consensus 179 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~ 258 (1128) .|.. ....|..+.||++||||+|. ||+.+++ T Consensus 160 ~~~~----------------~~~~g~~l~gktvGIIGlG~---------------------------------IG~~vA~ 190 (345) T 4g2n_A 160 GWGP----------------TQLLGMGLTGRRLGIFGMGR---------------------------------IGRAIAT 190 (345) T ss_dssp CCCT----------------TTTCBCCCTTCEEEEESCSH---------------------------------HHHHHHH T ss_pred ccCc----------------ccccccccCCCEEEEEEeCh---------------------------------hHHHHHH Confidence 1110 01123446678999999973 6888899 Q ss_pred hccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCccc-CHHHHhhcCCEEEEecCCCcccccc Q psy13054 259 SLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQL 337 (1128) Q Consensus 259 ~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~l 337 (1128) ++++|++. +++|+++....+...+++++ +|+|++++||||++|||+|++|+|+ T Consensus 191 ~l~~~G~~--------------------------V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~l 244 (345) T 4g2n_A 191 RARGFGLA--------------------------IHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGF 244 (345) T ss_dssp HHHTTTCE--------------------------EEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTC T ss_pred HHHHCCCE--------------------------EEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHH Confidence 88877543 34455443222222267777 9999999999999999999999999 Q ss_pred cCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCCh Q psy13054 338 IGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADH 417 (1128) Q Consensus 338 In~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~ 417 (1128) ||++.|++||||++|||+|||++|||+||++||++|+|+||+||||++|| +.++|||++||| ++|||++++|. T Consensus 245 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nv------ilTPHia~~t~ 317 (345) T 4g2n_A 245 LDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNI------FLTPHIGSATH 317 (345) T ss_dssp BCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTE------EECCSCTTCBH T ss_pred hCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCE------EEcCccCcCCH Confidence 99999999999999999999999999999999999999999999999999 899999999999 99999999998 Q ss_pred h------hhHHHHHHHHHHHH Q psy13054 418 P------LVQLDNCEEFFEEL 432 (1128) Q Consensus 418 ~------~~~~~n~~~~~~~~ 432 (1128) + ...++|+.+|+++. T Consensus 318 e~~~~~~~~~~~ni~~~l~g~ 338 (345) T 4g2n_A 318 ETRDAMGWLLIQGIEALNQSD 338 (345) T ss_dssp HHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHcCC Confidence 5 44568888877654 |
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
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Probab=100.00 E-value=1.7e-54 Score=493.92 Aligned_cols=277 Identities=26% Similarity=0.305 Sum_probs=250.0 Q ss_pred hHHHHHhhccceeEEe-ecCCChhhhhcCCCC--ccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHH Q psy13054 845 LETAKLLKAFKVSKIL-YTSRNKVKTPKRTEN--LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 (1128) Q Consensus 845 ~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~--LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL 921 (1128) ++..+.++++++..+. .+++++++|+++ |+ ||||++.|+|+|+||+++|+++||.|+|+|++++.+||||++++|| T Consensus 37 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L 115 (331) T 1xdw_A 37 KETAEMAAGFDAVILRGNCFANKQNLDIY-KKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAM 115 (331) T ss_dssp HHHHHTTTTCSEEEECTTCCBCHHHHHHH-HHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHH T ss_pred HHHHHHhcCCeEEEEeCCCCCCHHHHhhC-cccCceEEEEccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHH Confidence 5667777777765544 368999999997 87 9999999999999999999999999999999999999999999999 Q ss_pred HHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc Q psy13054 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001 (1128) Q Consensus 922 ~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~ 1001 (1128) ++.|++..+++.+++|.|... ......++.|+||||||+|.||+.+|+++++|||+|++||++..+. .. ..+.+ T Consensus 116 ~~~R~~~~~~~~~~~g~w~~~----~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~ 189 (331) T 1xdw_A 116 MLLRHTAYTTSRTAKKNFKVD----AFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG-IE-DYCTQ 189 (331) T ss_dssp HHHTTHHHHHHHHTTTCCCCC----STTCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS-CT-TTCEE T ss_pred HHHhCHHHHHHHHHcCCCccc----cCcCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH-HH-hcccc Confidence 999999999999999999610 0122348999999999999999999999999999999999876543 22 23556 Q ss_pred cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC--C Q psy13054 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL--P 1079 (1128) Q Consensus 1002 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl--~ 1079 (1128) .++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+|+||+||||++||+ | T Consensus 190 ~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~ 269 (331) T 1xdw_A 190 VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFG 269 (331) T ss_dssp CCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTT T ss_pred CCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCccc Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999994 4 Q ss_pred CC-------C----ccccC-CCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1080 AD-------H----PLVQL-DNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1080 ~~-------~----pL~~~-pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) .+ + |||++ |||++|||+||+|.++++++.+.+++||.+|++|+++.|.| T Consensus 270 ~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 330 (331) T 1xdw_A 270 KDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330 (331) T ss_dssp CCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTBC T ss_pred ccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHcCCCCCCCC Confidence 33 3 79999 99999999999999999999999999999999999998875 |
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
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Probab=100.00 E-value=2.9e-54 Score=497.31 Aligned_cols=275 Identities=25% Similarity=0.384 Sum_probs=250.4 Q ss_pred chHHHHHhhccceeEEee---cCCChhhhhcCCCCccEEEEccccCCcCChhhhhhC--CcEEEEcCCCChhHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKILY---TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKAR--GIRVGSVGHISSDTVAEYNIG 918 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~~---~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~--GI~V~n~p~~~a~sVAE~ala 918 (1128) .+++.+.++++++.+... +++++++|+++ |+||||++.++|+|+||+++|+++ ||.|+|+|++++.+||||+++ T Consensus 51 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~ 129 (364) T 2j6i_A 51 NSVLDQHIPDADIIITTPFHPAYITKERIDKA-KKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVM 129 (364) T ss_dssp TSHHHHHGGGCSEEEECTTSCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHH T ss_pred HHHHHHHhhCCeEEEecCcCCCCCCHHHHhhC-CCCeEEEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHH Confidence 356777788888655432 35899999997 999999999999999999999999 999999999999999999999 Q ss_pred HHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh-hhh Q psy13054 919 LAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE-GTA 996 (1128) Q Consensus 919 liL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~-~~~ 996 (1128) +||++.|++..+++.+++|.|.... ......+++|+||||||+|+||+++|++|++|||+ |++||++..... ..+ T Consensus 130 ~~L~~~R~~~~~~~~~~~g~W~~~~---~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~ 206 (364) T 2j6i_A 130 TMLVLVRNFVPAHEQIINHDWEVAA---IAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEK 206 (364) T ss_dssp HHHHHHTTHHHHHHHHHTTCCCHHH---HHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHH T ss_pred HHHHHHhChHHHHHHHHhCCCCcCc---ccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHh Confidence 9999999999999999999997210 01123489999999999999999999999999997 999997664444 445 Q ss_pred cCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 997 LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 997 ~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) .|+..+ ++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|++||+++|++|+|+||+||||++ T Consensus 207 ~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~ 286 (364) T 2j6i_A 207 VGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 286 (364) T ss_dssp TTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSS T ss_pred cCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCC Confidence 676655 8999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCCccccC--C---CeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCC Q psy13054 1076 EPLPADHPLVQL--D---NCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGE 1122 (1128) Q Consensus 1076 EPl~~~~pL~~~--p---NvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~ 1122 (1128) ||+|.++|||.+ | ||++|||+||+|.++..++.+.+++||.+|++|+ T Consensus 287 EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~ 338 (364) T 2j6i_A 287 QPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGK 338 (364) T ss_dssp SSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHHHTTC T ss_pred CCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHHHcCC Confidence 999999999999 9 9999999999999999999999999999999998 |
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
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Probab=100.00 E-value=7.9e-55 Score=496.78 Aligned_cols=276 Identities=26% Similarity=0.352 Sum_probs=245.8 Q ss_pred HHHHHhhccceeEEe-ecCCChhhhhcCCCC--ccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 846 ETAKLLKAFKVSKIL-YTSRNKVKTPKRTEN--LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 846 e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~--LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) ++.+.++++++.++. .+++++++|+++ |+ ||||++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|+ T Consensus 37 ~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~ 115 (333) T 1dxy_A 37 NTVEWAKGFDGINSLQTTPYAAGVFEKM-HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLY 115 (333) T ss_dssp TGGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHH T ss_pred HHHHHhcCCeEEEEcCCCCCCHHHHHhC-cccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHH Confidence 444445556654433 357899999997 77 99999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128) +.|++..+++.+++|.|... ......+++|+||||||+|+||+.+|+++++|||+|++||++.... .. ..+.+. T Consensus 116 ~~R~~~~~~~~~~~g~w~~~----~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~ 189 (333) T 1dxy_A 116 LLRNMGKVQAQLQAGDYEKA----GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG-DH-PDFDYV 189 (333) T ss_dssp HHTTHHHHHHHHHTTCHHHH----TCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS-CC-TTCEEC T ss_pred HhhhHHHHHHHHHcCCcccc----cCCCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh-hH-hccccC Confidence 99999999999999998510 0123358999999999999999999999999999999999876543 22 235567 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC--CC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL--PA 1080 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl--~~ 1080 (1128) ++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+ |. T Consensus 190 ~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~ 269 (333) T 1dxy_A 190 SLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLN 269 (333) T ss_dssp CHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHH T ss_pred CHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccc Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999993 21 Q ss_pred --------C---CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1081 --------D---HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1081 --------~---~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) + +|||++|||++|||+||+|.++++++.+.+++||.+|++|+++.|.| T Consensus 270 ~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v 328 (333) T 1dxy_A 270 LAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEV 328 (333) T ss_dssp HHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTEE T ss_pred cccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHHcCCCCCcee Confidence 2 58999999999999999999999999999999999999999988764 |
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
---|
Probab=100.00 E-value=9.2e-54 Score=482.97 Aligned_cols=271 Identities=36% Similarity=0.558 Sum_probs=248.8 Q ss_pred hHHHHHhhccceeEEee-cCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH Q psy13054 845 LETAKLLKAFKVSKILY-TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128) Q Consensus 845 ~e~~~~l~~~~~~~~~~-~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128) +++.+.++++++..+.. +++++++|+++ |+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||+++++|++ T Consensus 36 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~ 114 (307) T 1wwk_A 36 DRLVELVKDVEAIIVRSKPKVTRRVIESA-PKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSV 114 (307) T ss_dssp HHHHHHSTTCSEEEESSCSCBCHHHHTTC-TTCCEEEESSSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHH T ss_pred HHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCeEEEECCccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHH Confidence 44556666666555433 36899999997 99999999999999999999999999999999999999999999999999 Q ss_pred HhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccC Q psy13054 924 SRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVP 1003 (1128) Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~ 1003 (1128) .|++..+++.+++|.|.+. .....++.|+||||||+|+||+.+|+++++|||+|++||++..+....+.|+...+ T Consensus 115 ~R~~~~~~~~~~~g~w~~~-----~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~ 189 (307) T 1wwk_A 115 ARKIAFADRKMREGVWAKK-----EAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVD 189 (307) T ss_dssp HTTHHHHHHHHTTTCCCTT-----TCCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECC T ss_pred HhCHHHHHHHHHcCCCCcc-----CcCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccC Confidence 9999999999999999721 12335899999999999999999999999999999999987765435566777789 Q ss_pred hHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCc Q psy13054 1004 LDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 (1128) Q Consensus 1004 l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~p 1083 (1128) +++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+|.++| T Consensus 190 l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~ 269 (307) T 1wwk_A 190 LETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHP 269 (307) T ss_dssp HHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCG T ss_pred HHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCCh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcC Q psy13054 1084 LVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKG 1121 (1128) Q Consensus 1084 L~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G 1121 (1128) ||++||+++|||+|++|.++.+++.+.+++||.+|++| T Consensus 270 L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g 307 (307) T 1wwk_A 270 LTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307 (307) T ss_dssp GGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC T ss_pred HHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC Confidence 99999999999999999999999999999999999986 |
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
---|
Probab=100.00 E-value=2.1e-53 Score=481.35 Aligned_cols=273 Identities=27% Similarity=0.429 Sum_probs=251.6 Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) .+++.+.++++++..+. .+++++++++++ |+||||++.|+|+|++|+++|+++||.|+|+||+++.+||||+++++|+ T Consensus 37 ~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~ 115 (313) T 2ekl_A 37 KEELLNIIGNYDIIVVRSRTKVTKDVIEKG-KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIA 115 (313) T ss_dssp HHHHHHHGGGCSEEEECSSSCBCHHHHHHC-TTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHH T ss_pred HHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEEcCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHH Confidence 34566677777765543 357899999997 9999999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128) +.|++..+++.+++|.|. .....++.|+||||||+|+||+.+|+++++|||+|++||++..+....+.|+... T Consensus 116 ~~R~~~~~~~~~~~g~w~-------~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~ 188 (313) T 2ekl_A 116 AARKMYTSMALAKSGIFK-------KIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAV 188 (313) T ss_dssp HHHTHHHHHHHHHTTCCC-------CCCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEEC T ss_pred HHhCHHHHHHHHHcCCCC-------CCCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCceec Confidence 999999999999999996 1233589999999999999999999999999999999998776544455677777 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) ++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||++||++ ++ T Consensus 189 ~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~-~~ 267 (313) T 2ekl_A 189 SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPK-EE 267 (313) T ss_dssp CHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCC-SH T ss_pred CHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCC-Cc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 66 Q ss_pred ---ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC Q psy13054 1083 ---PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMI 1125 (1128) Q Consensus 1083 ---pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~ 1125 (1128) |||++|||++|||+|++|.++.+++.+.+++||.+|++|+|+. T Consensus 268 ~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l~ 313 (313) T 2ekl_A 268 WELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGMI 313 (313) T ss_dssp HHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTCC T ss_pred ccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCCC Confidence 9999999999999999999999999999999999999999873 |
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
---|
Probab=100.00 E-value=6.1e-53 Score=476.96 Aligned_cols=276 Identities=33% Similarity=0.477 Sum_probs=250.1 Q ss_pred chHHHHHhhccceeEEee-cCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKILY-TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~~-~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) .+++.+.++++++..... +++++++|+++ |+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||+ T Consensus 34 ~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~ 112 (311) T 2cuk_A 34 KAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLA 112 (311) T ss_dssp HHHHHHHHTTCSEEECCTTSCBCHHHHHHS-TTCCEEECSSSCCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHH T ss_pred HHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEECCcCccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHH Confidence 345666677777554332 47899999997 9999999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV 1002 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~ 1002 (1128) +.|++..+++.+++|.|.... .......++.|+||||||+|+||+.+|+++++|||+|++||++..+.. +... T Consensus 113 ~~R~~~~~~~~~~~g~w~~~~--~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-----~~~~ 185 (311) T 2cuk_A 113 VARRVVEGAAYARDGLWKAWH--PELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-----YPFL 185 (311) T ss_dssp HHTTHHHHHHHHHTTCCCCCC--TTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-----SCBC T ss_pred HHcChHHHHHHHHcCCCCccc--cccccCcCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-----cccC Confidence 999999999999999996200 001123489999999999999999999999999999999997665432 3456 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) ++++++++||+|++|+|++++|+++|+++.|+.||+|+++||+|||+++|+++|.++|+ |+|+||+||||++||++.++ T Consensus 186 ~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~ 264 (311) T 2cuk_A 186 SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGH 264 (311) T ss_dssp CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTS T ss_pred CHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCC Confidence 89999999999999999999999999999999999999999999999999999999999 99999999999999999999 Q ss_pred ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1083 PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1083 pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |||++||+++|||+|++|.++++++.+.+++||.+|++|+++.|.| T Consensus 265 ~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 310 (311) T 2cuk_A 265 PLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV 310 (311) T ss_dssp GGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC T ss_pred hhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCcc Confidence 9999999999999999999999999999999999999999998875 |
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
---|
Probab=100.00 E-value=1.2e-52 Score=476.56 Aligned_cols=277 Identities=28% Similarity=0.411 Sum_probs=251.5 Q ss_pred hHHHHHhhccceeEEee-cCCChhhhhcCCCC-ccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 845 LETAKLLKAFKVSKILY-TSRNKVKTPKRTEN-LKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 845 ~e~~~~l~~~~~~~~~~-~~i~~~~l~~~~~~-LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) +++.+.++++++..... +++++++|+++ |+ ||||++.|+|+|+||+++|+++||.|+|+||+++.+||||+++++|+ T Consensus 36 ~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~ 114 (320) T 1gdh_A 36 DEMIETAKSVDALLITLNEKCRKEVIDRI-PENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLG 114 (320) T ss_dssp HHHHHHHTTCSEEEEETTSCBCHHHHHHS-CTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHH T ss_pred HHHHHHhcCCEEEEECCCCCCCHHHHHhC-CccceEEEECCcccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHH Confidence 56667777777665543 57999999997 88 99999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeC-CCCchhhhhcCCcc Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS-RRVKEEGTALGAQL 1001 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~-~~~~~~~~~~g~~~ 1001 (1128) +.|++..+++.+++|.|... ........++.|+||||||+|+||+.+|+++++|||+|++||+ +.......+.|+.. T Consensus 115 ~~R~~~~~~~~~~~g~w~~~--~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~ 192 (320) T 1gdh_A 115 SARRAGEGEKMIRTRSWPGW--EPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATF 192 (320) T ss_dssp HHTTHHHHHHHHHTTCCCCC--CTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEE T ss_pred HHccHHHHHHHHHcCCCCcc--ccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEE Confidence 99999999999999999620 0001123489999999999999999999999999999999998 66553344567777 Q ss_pred c-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCC Q psy13054 1002 V-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPA 1080 (1128) Q Consensus 1002 ~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~ 1080 (1128) + ++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|.++|++|+|+||+||||+.|| +. T Consensus 193 ~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~ 271 (320) T 1gdh_A 193 HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NI 271 (320) T ss_dssp CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SC T ss_pred cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCC-CC Confidence 7 899999999999999999999999999999999999999999999999999999999999999999999999999 88 Q ss_pred CCccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC Q psy13054 1081 DHPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIY 1126 (1128) Q Consensus 1081 ~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~ 1126 (1128) ++|||++|||++|||++++|.++++++.+.+ +||.+|++|+++.. T Consensus 272 ~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~~ 316 (320) T 1gdh_A 272 NEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADMS 316 (320) T ss_dssp CTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCCT T ss_pred CChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCcc Confidence 9999999999999999999999999999999 99999999998754 |
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
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Probab=100.00 E-value=4.2e-52 Score=475.94 Aligned_cols=273 Identities=27% Similarity=0.391 Sum_probs=244.1 Q ss_pred hccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHH Q psy13054 852 KAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930 (1128) Q Consensus 852 ~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~ 930 (1128) .+++...+. ..++++++|+++ |+||||++.++|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+ T Consensus 62 ~~~~~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~ 140 (347) T 1mx3_A 62 NEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWL 140 (347) T ss_dssp HHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHH T ss_pred cCCeEEEEeCCCCCCHHHHhhC-CCCCEEEEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHH Confidence 455543333 457999999997 999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHcCCCccccc--cccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhh Q psy13054 931 RKCITSGEWALKQT--HIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTL 1007 (1128) Q Consensus 931 ~~~~~~g~w~~~~~--~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~el 1007 (1128) ++.+++|.|..... ..+.....+++|+||||||+|+||+.+|++|++|||+|++||++..+......|+..+ +++++ T Consensus 141 ~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~el 220 (347) T 1mx3_A 141 HQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDL 220 (347) T ss_dssp HHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHH T ss_pred HHHHHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHH Confidence 99999999952100 0000112479999999999999999999999999999999997765433445576654 89999 Q ss_pred hccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCC-CCCcccc Q psy13054 1008 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLVQ 1086 (1128) Q Consensus 1008 l~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~-~~~pL~~ 1086 (1128) +++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||+.||++ .++|||. T Consensus 221 l~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~ 300 (347) T 1mx3_A 221 LFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKD 300 (347) T ss_dssp HHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTT T ss_pred HhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHh Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 4799999 Q ss_pred CCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC Q psy13054 1087 LDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMI 1125 (1128) Q Consensus 1087 ~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~ 1125 (1128) +|||++|||+|++|.++.+++.+.+++||.+|++|+++. T Consensus 301 ~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~ 339 (347) T 1mx3_A 301 APNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPD 339 (347) T ss_dssp CSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSCTTT T ss_pred CCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc Confidence 999999999999999999999999999999999998654 |
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
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Probab=100.00 E-value=6.9e-52 Score=481.02 Aligned_cols=289 Identities=21% Similarity=0.301 Sum_probs=236.3 Q ss_pred cchhhhhhhhccCCc-eEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH Q psy13054 43 LVPESLSKLRFNSRF-DIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 43 l~~~~l~~l~~~~~~-~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128) +.++.++.++. ..| ++.+++. ..+.+++.+.++++|++++++.+++++++|+++ |+||+|+++|+|+||||+++ T Consensus 24 i~~~~~~~l~~-~g~~~v~~~~~---~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~IDl~~ 98 (416) T 3k5p_A 24 ISQTAVEYFKS-SGYTNVTHLPK---ALDKADLIKAISSAHIIGIRSRTQLTEEIFAAA-NRLIAVGCFSVGTNQVELKA 98 (416) T ss_dssp CCHHHHHHHHH-TTCCCEEECSS---CCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHC-TTCCEEEECSSCCTTBCHHH T ss_pred CCHHHHHHHHH-CCCcEEEECCC---CCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhC-CCcEEEEECccccCccCHHH Confidence 55566666652 345 7777653 367899999999999998888789999999986 89999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128) |+++||.|+|+|++|+++||||++++||+++|+++.++++++++ .|... .. T Consensus 99 a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g-------------~W~~~----------------~~ 149 (416) T 3k5p_A 99 ARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG-------------GWEKT----------------AI 149 (416) T ss_dssp HHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-------------CCCCC----------------CT T ss_pred HHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcc-------------ccccc----------------CC Confidence 99999999999999999999999999999999999998877653 33211 01 Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128) Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128) .+.++.||++||||+|. ||+.+++++++|++. T Consensus 150 ~~~el~gktvGIIGlG~---------------------------------IG~~vA~~l~~~G~~--------------- 181 (416) T 3k5p_A 150 GSREVRGKTLGIVGYGN---------------------------------IGSQVGNLAESLGMT--------------- 181 (416) T ss_dssp TCCCSTTCEEEEECCSH---------------------------------HHHHHHHHHHHTTCE--------------- T ss_pred CCccCCCCEEEEEeeCH---------------------------------HHHHHHHHHHHCCCE--------------- Confidence 12345678999999973 678888888877553 Q ss_pred cccCCccccceeecccccccccccccCC-cccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc Q psy13054 282 WRMGSKTDTNHYFGYNWFERSNGTALGA-QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128) Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~~~~~~~g~-~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128) +++|++..+.. ..+. ...+|+|++++||||++|||+|++|+||||++.|++||||++|||+|||++ T Consensus 182 -----------V~~yd~~~~~~--~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~v 248 (416) T 3k5p_A 182 -----------VRYYDTSDKLQ--YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSD 248 (416) T ss_dssp -----------EEEECTTCCCC--BTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTS T ss_pred -----------EEEECCcchhc--ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChh Confidence 34444332211 1122 345899999999999999999999999999999999999999999999999 Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCC----CCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHH Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPAD----HPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFE 430 (1128) Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~----~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~ 430 (1128) ||++||++||++|+|+||+||||++||++.+ +|||++||| ++|||++++|.+ ..+.+|+.+|++ T Consensus 249 vd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nv------ilTPHig~~T~ea~~~~~~~~~~nl~~~l~ 322 (416) T 3k5p_A 249 VDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENV------ILTPHIGGSTEEAQERIGTEVTRKLVEYSD 322 (416) T ss_dssp BCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTE------EECCSCTTCCHHHHHHHHHHHHHHHHHHHH T ss_pred hhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCE------EECCCCCCCCHHHHHHHHHHHHHHHHHHHh Confidence 9999999999999999999999999998775 799999999 999999999986 456789999887 Q ss_pred HH Q psy13054 431 EL 432 (1128) Q Consensus 431 ~~ 432 (1128) +. T Consensus 323 ~g 324 (416) T 3k5p_A 323 VG 324 (416) T ss_dssp HC T ss_pred hC Confidence 65 |
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
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Probab=100.00 E-value=2.1e-52 Score=475.87 Aligned_cols=296 Identities=21% Similarity=0.317 Sum_probs=250.0 Q ss_pred ccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128) .+.++.++.|+ ..+++.+++. ....+.+++.+.++++|+++++..+++++++|+++ |+||+|+++|+||||||+++ T Consensus 10 ~~~~~~~~~l~--~~~~v~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~-~~Lk~I~~~~~G~d~id~~~ 85 (330) T 4e5n_A 10 RVHEEILQLLA--PHCELITNQT-DSTLTREEILRRCRDAQAMMAFMPDRVDADFLQAC-PELRVIGCALKGFDNFDVDA 85 (330) T ss_dssp CCCHHHHHHHT--TTCEEECCCS-SSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHH T ss_pred CCCHHHHHHHH--hCCeEEEecC-CCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhC-CCCcEEEECCCcccccCHHH Confidence 56777777776 5678876543 33457899999999999999977789999999987 89999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128) |+++||.|+|+||+++++||||++++||+++|++..+++.++++ .| ..|.. .. T Consensus 86 ~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g-~w---------~~~~~-----------------~~ 138 (330) T 4e5n_A 86 CTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSG-KF---------RGWQP-----------------RF 138 (330) T ss_dssp HHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-CC---------CSCCS-----------------CC T ss_pred HHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhC-Cc---------cccCc-----------------cc Confidence 99999999999999999999999999999999999998877653 23 12221 01 Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128) Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128) .+..+.||++||||+|. ||+.++++++++++. T Consensus 139 ~~~~l~g~tvGIIG~G~---------------------------------IG~~vA~~l~~~G~~--------------- 170 (330) T 4e5n_A 139 YGTGLDNATVGFLGMGA---------------------------------IGLAMADRLQGWGAT--------------- 170 (330) T ss_dssp CCCCSTTCEEEEECCSH---------------------------------HHHHHHHHTTTSCCE--------------- T ss_pred cCCccCCCEEEEEeeCH---------------------------------HHHHHHHHHHHCCCE--------------- Confidence 12345678999999973 688889988877543 Q ss_pred cccCCccccceeecccccc-c-ccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCC Q psy13054 282 WRMGSKTDTNHYFGYNWFE-R-SNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 359 (1128) Q Consensus 282 ~~~g~~~~~~~~~g~~~~~-~-~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~ 359 (1128) +++|+++. + +.+.+.|+++++++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||+ T Consensus 171 -----------V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~ 239 (330) T 4e5n_A 171 -----------LQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239 (330) T ss_dssp -----------EEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGG T ss_pred -----------EEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCc Confidence 34455433 1 1234567788899999999999999999999999999999999999999999999999 Q ss_pred ccCHHHHHHHHHcCCeeEEEEecCCCC-------CCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHH Q psy13054 360 LLDQEALVEFLKDKKIGGAGLDVMIPE-------PLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCE 426 (1128) Q Consensus 360 lVDe~AL~~AL~sG~IagAaLDVfe~E-------Pl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~ 426 (1128) +|||+||++||++|+|+||+||||++| |++.++|||++||| ++|||++++|.+ ...++|+. T Consensus 240 ~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nv------ilTPHia~~t~e~~~~~~~~~~~ni~ 313 (330) T 4e5n_A 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNT------LFTPHIGSAVRAVRLEIERCAAQNIL 313 (330) T ss_dssp GBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSE------EECSSCTTCCHHHHHHHHHHHHHHHH T ss_pred hhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCE------EECCcCCCChHHHHHHHHHHHHHHHH Confidence 999999999999999999999999999 99999999999999 999999999974 34578888 Q ss_pred HHHHHHH Q psy13054 427 EFFEELF 433 (1128) Q Consensus 427 ~~~~~~~ 433 (1128) +|+++.. T Consensus 314 ~~~~g~~ 320 (330) T 4e5n_A 314 QALAGER 320 (330) T ss_dssp HHHTTSC T ss_pred HHHcCCC Confidence 8887653 |
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
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Probab=100.00 E-value=4.6e-52 Score=467.98 Aligned_cols=253 Identities=23% Similarity=0.294 Sum_probs=234.4 Q ss_pred CChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCcccc Q psy13054 864 RNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQ 943 (1128) Q Consensus 864 i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~ 943 (1128) .+.++|+++ |+||||++.|+|+|++|++++ ++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.. T Consensus 40 ~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-- 115 (303) T 1qp8_A 40 ITAEELAKM-PRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGR-- 115 (303) T ss_dssp CCHHHHHHC-TTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC-- T ss_pred CCHHHHhhC-CCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC-- Confidence 456888887 999999999999999999995 7999999999999999999999999999999999999999999962 Q ss_pred ccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcc Q psy13054 944 THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 944 ~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) .....+++|+||||||+|+||+.+|++|++|||+|++||++.. .. ......++++++++||+|++|+|++++ T Consensus 116 ----~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~---~~~~~~~l~ell~~aDvV~l~~P~~~~ 187 (303) T 1qp8_A 116 ----DVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG---PWRFTNSLEEALREARAAVCALPLNKH 187 (303) T ss_dssp ----CSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS---SSCCBSCSHHHHTTCSEEEECCCCSTT T ss_pred ----CCCCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc---CcccCCCHHHHHhhCCEEEEeCcCchH Confidence 1123379999999999999999999999999999999987665 21 122345899999999999999999999 Q ss_pred cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEecc-CCCCCCCCCccccCCCeEECCCCCCC--c Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVM-IPEPLPADHPLVQLDNCVLTPHTSSA--T 1100 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~-e~EPl~~~~pL~~~pNvilTPHiag~--t 1100 (1128) |+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+|||| ++||+++++|||++|||++|||+||+ | T Consensus 188 t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t 267 (303) T 1qp8_A 188 TRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGN 267 (303) T ss_dssp TTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSC T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCC Confidence 99999999999999999999999999999999999999999999999999 88999999999999999999999998 9 Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1101 KAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1101 ~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) .++++++.+.+++||.+|++|+++.|.| T Consensus 268 ~e~~~~~~~~~~~nl~~~~~g~~~~~~v 295 (303) T 1qp8_A 268 ERVWRQMVMEAVRNLITYATGGRPRNIA 295 (303) T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCSCBC T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcee Confidence 9999999999999999999999988865 |
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
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Probab=100.00 E-value=1.7e-51 Score=468.70 Aligned_cols=272 Identities=29% Similarity=0.478 Sum_probs=247.5 Q ss_pred HHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHh Q psy13054 847 TAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSR 925 (1128) Q Consensus 847 ~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R 925 (1128) +.+.+++++++.+. .+++++++|+++ |+||||++.|+|+|+||+++|+++||.|+|+||+++.+||||+++++|++.| T Consensus 59 ~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R 137 (333) T 3ba1_A 59 LALQAESIRAVVGNSNAGADAELIDAL-PKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLR 137 (333) T ss_dssp HHHHTTTEEEEEECSSSCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHT T ss_pred HHHHhCCCEEEEEcCCCCCCHHHHhhC-CCCcEEEEcCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHh Confidence 45556666655443 357999999997 9999999999999999999999999999999999999999999999999999 Q ss_pred ccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccCh Q psy13054 926 RFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPL 1004 (1128) Q Consensus 926 ~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l 1004 (1128) ++..+++.+++|.|... ......+++|++|||||+|+||+.+|+++++|||+|++||++..... ++. ..++ T Consensus 138 ~~~~~~~~~~~g~w~~~----~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~----g~~~~~~l 209 (333) T 3ba1_A 138 RICECDKYVRRGAWKFG----DFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT----NYTYYGSV 209 (333) T ss_dssp THHHHHHHHHTTGGGGC----CCCCCCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC----CSEEESCH T ss_pred CHHHHHHHHHcCCCCcc----ccccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc----CceecCCH Confidence 99999999999999621 01123489999999999999999999999999999999987665432 444 3589 Q ss_pred HhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCcc Q psy13054 1005 DTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPL 1084 (1128) Q Consensus 1005 ~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL 1084 (1128) ++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||.++|+++|+++|++|+++||+||||++||++. +|| T Consensus 210 ~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L 288 (333) T 3ba1_A 210 VELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKL 288 (333) T ss_dssp HHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGG T ss_pred HHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chh Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 999 Q ss_pred ccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1085 VQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1085 ~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |++|||++|||+|+.|.++.+++.+.+++||.+|++|+++.|.| T Consensus 289 ~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~V 332 (333) T 3ba1_A 289 FGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPV 332 (333) T ss_dssp GGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBC T ss_pred hcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCC Confidence 99999999999999999999999999999999999999999876 |
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
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Probab=100.00 E-value=7.1e-51 Score=474.24 Aligned_cols=289 Identities=22% Similarity=0.314 Sum_probs=232.8 Q ss_pred cchhhhhhhhccCCc-eEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH Q psy13054 43 LVPESLSKLRFNSRF-DIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 43 l~~~~l~~l~~~~~~-~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128) +.++.++.++. ..+ ++.+++. ..+.+++.+.++++|++++++.+++++++|+++ |+||+|+++|+|+||||+++ T Consensus 13 ~~~~~~~~l~~-~~~~~v~~~~~---~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~iD~~~ 87 (404) T 1sc6_A 13 VHQKALESLRA-AGYTNIEFHKG---ALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGTNQVDLDA 87 (404) T ss_dssp CCHHHHHHHHH-TTCCCEEECSS---CCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCCTTBCHHH T ss_pred CCHHHHHHHHh-CCCcEEEEcCC---CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCcEEEECCcccCccCHHH Confidence 44555555542 236 6777652 357899999999999999888789999999986 89999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128) |+++||.|+|+|++|+++||||++++||+++|+++.++++++++ .|... .+ T Consensus 88 a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g-------------~W~~~----------------~~ 138 (404) T 1sc6_A 88 AAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG-------------VGNKL----------------AA 138 (404) T ss_dssp HHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHT-------------CCC-------------------- T ss_pred HHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcC-------------Ccccc----------------CC Confidence 99999999999999999999999999999999999998887763 23210 01 Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128) Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128) .+.++.||++||||+|. ||+.+++++++|++. T Consensus 139 ~~~el~gktlGiIGlG~---------------------------------IG~~vA~~l~~~G~~--------------- 170 (404) T 1sc6_A 139 GSFEARGKKLGIIGYGH---------------------------------IGTQLGILAESLGMY--------------- 170 (404) T ss_dssp -CCCSTTCEEEEECCSH---------------------------------HHHHHHHHHHHTTCE--------------- T ss_pred CccccCCCEEEEEeECH---------------------------------HHHHHHHHHHHCCCE--------------- Confidence 12345678999999973 678888888877543 Q ss_pred cccCCccccceeecccccccccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc Q psy13054 282 WRMGSKTDTNHYFGYNWFERSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128) Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128) +++|++..... ..+++++ +|+|++++||||++|||+|++|+||||++.|++||+|++|||+|||++ T Consensus 171 -----------V~~~d~~~~~~--~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~ 237 (404) T 1sc6_A 171 -----------VYFYDIENKLP--LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 237 (404) T ss_dssp -----------EEEECSSCCCC--CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSS T ss_pred -----------EEEEcCCchhc--cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChH Confidence 34444332211 1134554 899999999999999999999999999999999999999999999999 Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCC----CCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHH Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPA----DHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFE 430 (1128) Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~----~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~ 430 (1128) ||++||++||++|+|+||+||||++||++. ++|||++||| ++|||++++|.+ ..+.+|+.+|++ T Consensus 238 vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nv------ilTPHi~~~T~ea~~~~~~~~~~nl~~~l~ 311 (404) T 1sc6_A 238 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV------LLTPHIGGSTQEAQENIGLEVAGKLIKYSD 311 (404) T ss_dssp BCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTE------EEECCCSCCSHHHHHHHHHHHHHHHHHHHH T ss_pred HhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCE------EECCCCCCCcHHHHHHHHHHHHHHHHHHHc Confidence 999999999999999999999999999864 5799999999 999999999985 346789999888 Q ss_pred HH Q psy13054 431 EL 432 (1128) Q Consensus 431 ~~ 432 (1128) +. T Consensus 312 g~ 313 (404) T 1sc6_A 312 NG 313 (404) T ss_dssp HC T ss_pred CC Confidence 65 |
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
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Probab=100.00 E-value=5.5e-51 Score=466.76 Aligned_cols=283 Identities=20% Similarity=0.287 Sum_probs=236.3 Q ss_pred CCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCC--CCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEec Q psy13054 55 SRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPH--QKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTV 132 (1128) Q Consensus 55 ~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~--~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~ 132 (1128) ..+++.+++... .+.+++.+.++++|++++++. .++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+ T Consensus 39 ~g~ev~~~~~~~--~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~-p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~ 115 (351) T 3jtm_A 39 QGHQYIVTDDKE--GPDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-KNLKLLLTAGIGSDHIDLQAAAAAGLTVAEV 115 (351) T ss_dssp TTCEEEEESCCS--STTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHC-SSCCEEEESSSCCTTBCHHHHHHTTCEEEEC T ss_pred CCCEEEEeCCCC--CCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhC-CCCeEEEEeCeeecccCHHHHHhcCeeEEEC Confidence 458888876432 356789999999999998653 46999999986 8999999999999999999999999999999 Q ss_pred CCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceee Q psy13054 133 GPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYL 212 (1128) Q Consensus 133 pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~g 212 (1128) ||+++++||||++++||+++|++..+++.++++ . |..... ...+..+.||++| T Consensus 116 ~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-~------------W~~~~~--------------~~~~~~l~gktvG 168 (351) T 3jtm_A 116 TGSNVVSVAEDELMRILILMRNFVPGYNQVVKG-E------------WNVAGI--------------AYRAYDLEGKTIG 168 (351) T ss_dssp TTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-C------------CCHHHH--------------HTTCCCSTTCEEE T ss_pred CCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcC-C------------Cccccc--------------cCCcccccCCEEe Confidence 999999999999999999999999988877653 3 321000 0012235678999 Q ss_pred eeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccce Q psy13054 213 LISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNH 292 (1128) Q Consensus 213 iiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~ 292 (1128) |||+|. ||+.+++++++|++. T Consensus 169 IIG~G~---------------------------------IG~~vA~~l~~~G~~-------------------------- 189 (351) T 3jtm_A 169 TVGAGR---------------------------------IGKLLLQRLKPFGCN-------------------------- 189 (351) T ss_dssp EECCSH---------------------------------HHHHHHHHHGGGCCE-------------------------- T ss_pred EEEeCH---------------------------------HHHHHHHHHHHCCCE-------------------------- Confidence 999973 678888888877553 Q ss_pred eecccccc--cccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHH Q psy13054 293 YFGYNWFE--RSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEF 369 (1128) Q Consensus 293 ~~g~~~~~--~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~A 369 (1128) +++|++.. .+...+.|++++ +++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++|||+||++| T Consensus 190 V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~a 269 (351) T 3jtm_A 190 LLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDA 269 (351) T ss_dssp EEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHH T ss_pred EEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHH Confidence 33444332 122345677777 899999999999999999999999999999999999999999999999999999999 Q ss_pred HHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHHHH Q psy13054 370 LKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEEL 432 (1128) Q Consensus 370 L~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~~ 432 (1128) |++|+|+||+||||++||+|.+||||++||| ++|||++++|.+. .+.+|+.+|+++. T Consensus 270 L~~g~i~ga~lDV~~~EP~~~~~pL~~~~nv------ilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~ 332 (351) T 3jtm_A 270 VESGHIGGYSGDVWDPQPAPKDHPWRYMPNQ------AMTPHTSGTTIDAQLRYAAGTKDMLERYFKGE 332 (351) T ss_dssp HHHTSEEEEEESCCSSSSCCTTCGGGTSTTB------CCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTC T ss_pred HHhCCccEEEeCCCCCCCCCCCChhhcCCCE------EECCcCCCCCHHHHHHHHHHHHHHHHHHHcCC Confidence 9999999999999999999999999999999 9999999998753 4567787777754 |
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
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Probab=100.00 E-value=1.5e-50 Score=461.59 Aligned_cols=282 Identities=31% Similarity=0.484 Sum_probs=252.7 Q ss_pred chHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHH Q psy13054 844 GLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIA 922 (1128) Q Consensus 844 ~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~ 922 (1128) .++..+.+++++++.+. .+++++++|+++ |+||||++.|+|+|++|+++|+++||.|+|+||+++.+||||+++++|+ T Consensus 33 ~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~ 111 (333) T 2d0i_A 33 GEELKGVIGRFDGIIVSPTTKITREVLENA-ERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIIN 111 (333) T ss_dssp HHHHHHHGGGCSEEEECTTSCBCHHHHTTC-TTCCEEEESSSCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHhcCCEEEEECCCCCCCHHHHhhC-CCceEEEECCcccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHH Confidence 44566677777765533 357999999997 9999999999999999999999999999999999999999999999999 Q ss_pred HHhccHHHHHHHHcCCCccccccccC-CcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIG-PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~-~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~ 1001 (1128) +.|++..+++.+++|.|......... ....+++|++|||||+|.||+.+|+++++|||+|++||++.......+.|+.. T Consensus 112 ~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~ 191 (333) T 2d0i_A 112 LMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARY 191 (333) T ss_dssp HHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEE T ss_pred HHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCcee Confidence 99999999999999999621000000 01158999999999999999999999999999999999877653344556666 Q ss_pred cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC Q psy13054 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128) Q Consensus 1002 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128) .++++++++||+|++|+|.+++|+++++++.++.||+| +|||+|||.++|+++|.++|++|+|+||++|||++||++ + T Consensus 192 ~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~ 269 (333) T 2d0i_A 192 MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVR-E 269 (333) T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCS-C T ss_pred cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCC-C Confidence 79999999999999999999999999999999999999 999999999999999999999999999999999999988 9 Q ss_pred CccccCC-CeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1082 HPLVQLD-NCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1082 ~pL~~~p-NvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) +|||.+| ||++|||+|+.|.++.+++.+.+++||.+|++|+++.|.| T Consensus 270 ~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v 317 (333) T 2d0i_A 270 HELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDLV 317 (333) T ss_dssp CGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCCTTBS T ss_pred chHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcCcc Confidence 9999999 9999999999999999999999999999999999988765 |
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
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Probab=100.00 E-value=2.9e-50 Score=459.12 Aligned_cols=282 Identities=42% Similarity=0.628 Sum_probs=255.2 Q ss_pred hHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH Q psy13054 845 LETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128) Q Consensus 845 ~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128) +++.+.++++++..+. .+++++++|++++|+||||++.++|+|++|+++|+++||.|+|+|++++.+||||+++++|++ T Consensus 45 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~ 124 (330) T 2gcg_A 45 KELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTT 124 (330) T ss_dssp HHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHH T ss_pred HHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHH Confidence 5667777777765543 357899999985489999999999999999999999999999999999999999999999999 Q ss_pred HhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc Q psy13054 924 SRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV 1002 (1128) Q Consensus 924 ~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~ 1002 (1128) .|++..+++.+++|.|.... .......++.|++|||||+|.||+.+|++++++||+|++||++..+.. ..+.++..+ T Consensus 125 ~R~~~~~~~~~~~~~w~~~~--~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~ 202 (330) T 2gcg_A 125 CRRLPEAIEEVKNGGWTSWK--PLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV 202 (330) T ss_dssp HTTHHHHHHHHHTTCCCSCC--TTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC T ss_pred HhCHHHHHHHHHcCCCcccC--cccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC Confidence 99999999999999996200 001123489999999999999999999999999999999998765443 445566667 Q ss_pred ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCC Q psy13054 1003 PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADH 1082 (1128) Q Consensus 1003 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~ 1082 (1128) ++++++++||+|++|+|.+++|+++++++.++.||+|++|||+|||+++|+++|.++|++|+|.||++|||++||+++++ T Consensus 203 ~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~ 282 (330) T 2gcg_A 203 STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH 282 (330) T ss_dssp CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTC T ss_pred CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1083 PLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1083 pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |||++|||++|||+|+.|.++.+++.+.+++|+.+|++|+++.|.| T Consensus 283 ~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v 328 (330) T 2gcg_A 283 PLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSEL 328 (330) T ss_dssp GGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCCCTTEE T ss_pred hhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Confidence 9999999999999999999999999999999999999999988864 |
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
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Probab=100.00 E-value=1.8e-50 Score=463.64 Aligned_cols=264 Identities=27% Similarity=0.369 Sum_probs=241.4 Q ss_pred cCCChhhhhcCCC-CccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCC-- Q psy13054 862 TSRNKVKTPKRTE-NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGE-- 938 (1128) Q Consensus 862 ~~i~~~~l~~~~~-~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~-- 938 (1128) +++++++|+++ | +||||++.++|+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|. T Consensus 67 ~~~~~~~l~~~-~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~ 145 (348) T 2w2k_A 67 YPWNADLISHL-PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPE 145 (348) T ss_dssp CCBCHHHHTTS-CTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHH T ss_pred CCCCHHHHHhc-ccCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCc Confidence 57899999997 7 6999999999999999999999999999999999999999999999999999999999999999 Q ss_pred -CccccccccCCcccccCCCeEEEEEcChhhHHHHHHHh-hCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEE Q psy13054 939 -WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLK-AFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFI 1014 (1128) Q Consensus 939 -w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~-afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV 1014 (1128) |...... ......+++|++|||||+|+||+.+|++++ +|||+|++||++....+ ..+.|+..+ ++++++++||+| T Consensus 146 ~w~~~~~~-~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV 224 (348) T 2w2k_A 146 TFNRVHLE-IGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCV 224 (348) T ss_dssp HHHHHHHH-HHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEE T ss_pred cccccccc-ccccCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEE Confidence 9410000 001234899999999999999999999999 99999999998765543 444577766 899999999999 Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECC Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTP 1094 (1128) Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTP 1094 (1128) ++|+|++++|+++|+++.++.||+|++|||+|||+++|+++|.++|++|+|+||++|||++|| +.++|||++|||++|| T Consensus 225 il~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nviltP 303 (348) T 2w2k_A 225 SVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTT 303 (348) T ss_dssp EECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEEECC T ss_pred EEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCEEEcC Confidence 999999999999999999999999999999999999999999999999999999999999999 6788999999999999 Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1095 HTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1095 Hiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) |+|+.|.++.+++.+.+++||.+|++|+++.|.| T Consensus 304 H~~~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 337 (348) T 2w2k_A 304 HIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTP 337 (348) T ss_dssp SCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCSSB T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHcCCCCccee Confidence 9999999999999999999999999999888765 |
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
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Probab=100.00 E-value=2.4e-51 Score=467.50 Aligned_cols=289 Identities=22% Similarity=0.306 Sum_probs=215.1 Q ss_pred ccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128) .+.++.++.|+ +.|++..++. ..+.+++++.++++|+++++..+++++++|+++ |+||+|+++|+||||||+++ T Consensus 38 ~~~~~~~~~L~--~~~~v~~~~~---~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~id~~~ 111 (340) T 4dgs_A 38 PMMPFVMDELQ--RNYSVHRLYQ---AADRPALEAALPSIRAVATGGGAGLSNEWMEKL-PSLGIIAINGVGTDKVDLAR 111 (340) T ss_dssp CCCHHHHHTHH--HHSCCEETTC---GGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHC-SSCCEEEEESSCCTTBCHHH T ss_pred CCCHHHHHHHh--cCCcEEEeCC---CCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhC-CCCEEEEECCCCccccCHHH Confidence 57778888875 5688877643 135678888889999999987789999999986 89999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128) |+++||.|+|+||+++++||||++++||+++|++..+++.++++ . |.... . + . T Consensus 112 a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g-~------------W~~~~-~--------~-----~ 164 (340) T 4dgs_A 112 ARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREG-R------------WAAGE-Q--------L-----P 164 (340) T ss_dssp HHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-C------------C--------------------C T ss_pred HHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcC-C------------ccccc-C--------c-----C Confidence 99999999999999999999999999999999999998877653 3 32100 0 0 0 Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128) Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128) .+..+.||++||||+|. +|+.++++++++++. T Consensus 165 ~~~~l~gktiGIIGlG~---------------------------------IG~~vA~~l~~~G~~--------------- 196 (340) T 4dgs_A 165 LGHSPKGKRIGVLGLGQ---------------------------------IGRALASRAEAFGMS--------------- 196 (340) T ss_dssp CCCCCTTCEEEEECCSH---------------------------------HHHHHHHHHHTTTCE--------------- T ss_pred ccccccCCEEEEECCCH---------------------------------HHHHHHHHHHHCCCE--------------- Confidence 12345678999999973 678888888877653 Q ss_pred cccCCccccceeecccccccccccccCCc-ccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc Q psy13054 282 WRMGSKTDTNHYFGYNWFERSNGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128) Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~~~~~~~g~~-~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128) +++|++.... ..++. +.+++|++++||+|++|||+|++|+++||++.|++||+|++|||+|||++ T Consensus 197 -----------V~~~dr~~~~---~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~v 262 (340) T 4dgs_A 197 -----------VRYWNRSTLS---GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNV 262 (340) T ss_dssp -----------EEEECSSCCT---TSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC-- T ss_pred -----------EEEEcCCccc---ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcc Confidence 2333332221 12233 34999999999999999999999999999999999999999999999999 Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) |||+||++||++|+|+||+||||++||++. +|||++||| ++|||++++|.+ ...++|+.+|+++. T Consensus 263 vde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nv------ilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~ 333 (340) T 4dgs_A 263 VDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNT------VLMPHQGSATVETRMAMGKLVLANLAAHFAGE 333 (340) T ss_dssp ------------CCSSEEEESCCSSSSSCC-SHHHHSSSE------EECSSCSSCCHHHHHHHHHHHHHHHHHHHTTS T ss_pred cCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCE------EEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCC Confidence 999999999999999999999999999765 599999999 999999999985 44568888877654 |
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
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Probab=100.00 E-value=1.8e-51 Score=469.20 Aligned_cols=280 Identities=24% Similarity=0.318 Sum_probs=231.4 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHH-HHhccC-CCceEEEEcCcccccccHHHHHhCCcEEEecC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKE-VLDRSG-ENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~e-vL~~~~-~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128) .+++.+++.. .+ +++++.++++|+++++..++++++ +|++++ ++||+|+++|+||||||+++|+++||.|+|+| T Consensus 25 ~~~v~~~~~~---~~-~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p 100 (343) T 2yq5_A 25 DVEIKTTDQA---LT-SATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVP 100 (343) T ss_dssp TCEEEEESSC---CS-TTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSCCTTBCSSTTCC--CEEECCS T ss_pred CeEEEECCCC---CC-HHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECceeecccchhHHHhCCEEEEECC Confidence 5778776642 22 567899999999999877899999 999873 47999999999999999999999999999999 Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHH-hhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceee Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIA-RLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYL 212 (1128) Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~g 212 (1128) ++++++||||++++||+++|++..+++.++ ++ +| .|.. ...+..+.||++| T Consensus 101 ~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g-~~----------~w~~-----------------~~~~~~l~gktvg 152 (343) T 2yq5_A 101 VYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDH-DF----------TWPS-----------------NLISNEIYNLTVG 152 (343) T ss_dssp CSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHC-CC----------CCCG-----------------GGCBCCGGGSEEE T ss_pred CCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcC-Cc----------cccc-----------------CCCccccCCCeEE Confidence 999999999999999999999999888776 43 22 2311 0123345678999 Q ss_pred eeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccce Q psy13054 213 LISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNH 292 (1128) Q Consensus 213 iiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~ 292 (1128) |||+|. ||+.+++++++|++. T Consensus 153 IiGlG~---------------------------------IG~~vA~~l~~~G~~-------------------------- 173 (343) T 2yq5_A 153 LIGVGH---------------------------------IGSAVAEIFSAMGAK-------------------------- 173 (343) T ss_dssp EECCSH---------------------------------HHHHHHHHHHHTTCE-------------------------- T ss_pred EEecCH---------------------------------HHHHHHHHHhhCCCE-------------------------- Confidence 999973 678888888877543 Q ss_pred eecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHc Q psy13054 293 YFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372 (1128) Q Consensus 293 ~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128) +++|+++.... .+.++++++++|++++||+|++|||+|++|+|+||++.|++||||++|||+|||++|||+||++||++ T Consensus 174 V~~~d~~~~~~-~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~ 252 (343) T 2yq5_A 174 VIAYDVAYNPE-FEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQD 252 (343) T ss_dssp EEEECSSCCGG-GTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH T ss_pred EEEECCChhhh-hhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc Confidence 34455443322 22346778999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCeeEEEEecCCCCC--CCCC-----------CCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH Q psy13054 373 KKIGGAGLDVMIPEP--LPAD-----------HPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128) Q Consensus 373 G~IagAaLDVfe~EP--l~~~-----------~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128) |+|+||+||||++|| ++.+ +|||++||| ++|||++++|.+ ...++|+.+|+++.. T Consensus 253 g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nv------ilTPHia~~t~ea~~~~~~~~~~ni~~~l~g~~ 326 (343) T 2yq5_A 253 GEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNV------VITPHSAFYTETSIRNMVQICLTDQLTIAKGGR 326 (343) T ss_dssp TSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTE------EECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCC T ss_pred CCCcEEEecccccCCCccccccccccccccchhHHhcCCCE------EECCccccchHHHHHHHHHHHHHHHHHHHcCCC Confidence 999999999999999 5555 489999999 999999999986 345678888777653 |
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
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Probab=100.00 E-value=1.3e-50 Score=464.16 Aligned_cols=290 Identities=20% Similarity=0.288 Sum_probs=239.3 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEe-CCCCCCCHHHHhccCCCceEEEEcCccc----ccccHHHHHhCCcEEE Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLC-NPHQKVDKEVLDRSGENLKVIATFSVGH----DHLHLDEIKSRGIRVG 130 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~-~~~~~i~~evL~~~~~~LK~I~~~gvG~----DnIDl~aa~erGI~V~ 130 (1128) .+++++++.. ..+.+++.+.++++|++++ +..+++++++|+++ |+||+|+++|+|+ ||||+++|+++||.|+ T Consensus 26 ~~~v~~~~~~--~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~-~~Lk~I~~~g~G~~~~~d~id~~~a~~~gI~V~ 102 (352) T 3gg9_A 26 DHEVKVFNNT--VKGVGQLAARVADVEALVLIRERTRVTRQLLDRL-PKLKIISQTGRVSRDAGGHIDLEACTDKGVVVL 102 (352) T ss_dssp TSEEEECCSC--CCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTC-TTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEE T ss_pred CceEEEecCC--CCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhC-CCCeEEEEeCcccCCccCcccHHHHHhCCeEEE Confidence 4888887642 2467889999999999998 55678999999986 8999999999999 9999999999999999 Q ss_pred ecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccce Q psy13054 131 TVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKA 210 (1128) Q Consensus 131 n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt 210 (1128) |+||+ +++||||++++||++.|++..+++.++++ .|..... ....|+. ....+..+.||+ T Consensus 103 n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g-~W~~~~~--~~~~~~~----------------~~~~~~~l~g~t 162 (352) T 3gg9_A 103 EGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHG-AWQQSGL--KSTTMPP----------------NFGIGRVLKGQT 162 (352) T ss_dssp CCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTT-CTTCCCC--CCTTSCT----------------TTTSBCCCTTCE T ss_pred ECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcC-CCCcccc--ccccccc----------------ccccCccCCCCE Confidence 99999 99999999999999999999998877653 3421000 0001110 001133456789 Q ss_pred eeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccc Q psy13054 211 YLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDT 290 (1128) Q Consensus 211 ~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~ 290 (1128) +||||+|. ||+.++++++++++ T Consensus 163 vGIIGlG~---------------------------------IG~~vA~~l~~~G~------------------------- 184 (352) T 3gg9_A 163 LGIFGYGK---------------------------------IGQLVAGYGRAFGM------------------------- 184 (352) T ss_dssp EEEECCSH---------------------------------HHHHHHHHHHHTTC------------------------- T ss_pred EEEEeECH---------------------------------HHHHHHHHHHhCCC------------------------- Confidence 99999873 67888888877654 Q ss_pred ceeecccccccc-cccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHH Q psy13054 291 NHYFGYNWFERS-NGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVE 368 (1128) Q Consensus 291 ~~~~g~~~~~~~-~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~ 368 (1128) ++++|+++.+. ...+.|++++ +++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++|||+||++ T Consensus 185 -~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~ 263 (352) T 3gg9_A 185 -NVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVT 263 (352) T ss_dssp -EEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHH T ss_pred -EEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHH Confidence 33455543321 2345678888 99999999999999999999999999999999999999999999999999999999 Q ss_pred HHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH Q psy13054 369 FLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128) Q Consensus 369 AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128) ||++|+|+||+||||++||+|.++|||++||| ++|||++++|.+ ...++|+.+|+++.. T Consensus 264 aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~p 328 (352) T 3gg9_A 264 ALNRGRPGMAAIDVFETEPILQGHTLLRMENC------ICTPHIGYVERESYEMYFGIAFQNILDILQGNV 328 (352) T ss_dssp HHHHTSSSEEEECCCSSSCCCSCCGGGGCTTE------EECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCC T ss_pred HHHhCCccEEEecccCCCCCCCCChhhcCCCE------EECCCCCCCCHHHHHHHHHHHHHHHHHHHcCCC Confidence 99999999999999999999999999999999 999999999875 345688888877643 |
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
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Probab=100.00 E-value=3.5e-50 Score=459.09 Aligned_cols=282 Identities=34% Similarity=0.506 Sum_probs=252.5 Q ss_pred hHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHH Q psy13054 845 LETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAV 923 (1128) Q Consensus 845 ~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~ 923 (1128) +++.+.++++++..+. .+++++++|+++ |+||||++.|+|+|++|+++|+++||.|+|+||+++.+||||+++++|++ T Consensus 37 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~ 115 (334) T 2dbq_A 37 EILLKKVKEVDALVTMLSERIDKEVFENA-PKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115 (334) T ss_dssp HHHHHHTTSCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHH T ss_pred HHHHHHhcCcEEEEEcCCCCCCHHHHhhC-CCceEEEECCcccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHH Confidence 4556666667655543 247899999997 99999999999999999999999999999999999999999999999999 Q ss_pred HhccHHHHHHHHcCCCccc--cccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc Q psy13054 924 SRRFQEGRKCITSGEWALK--QTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001 (1128) Q Consensus 924 ~R~i~~~~~~~~~g~w~~~--~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~ 1001 (1128) .|++..+++.+++|.|... .+........++.|++|||||+|.||+.+|++++++||+|++||++.......+.|+.. T Consensus 116 ~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~ 195 (334) T 2dbq_A 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEF 195 (334) T ss_dssp HHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEE T ss_pred HhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCccc Confidence 9999999999999999510 00000112348999999999999999999999999999999999877653244557777 Q ss_pred cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC Q psy13054 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128) Q Consensus 1002 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128) .++++++++||+|++|+|.+++|+++++++.++.||++++|||+|||.++|+++|.++|++|+|+||++|||++|| +.+ T Consensus 196 ~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~ 274 (334) T 2dbq_A 196 KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYN 274 (334) T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CCC T ss_pred CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CCC Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999999 889 Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) +|||.+|||++|||+|+.|.++.+++.+.+++||.+|++|+++.|.| T Consensus 275 ~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v 321 (334) T 2dbq_A 275 EELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPTLV 321 (334) T ss_dssp HHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCCTTBS T ss_pred chhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcccc Confidence 99999999999999999999999999999999999999999988765 |
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
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Probab=100.00 E-value=7.1e-51 Score=454.55 Aligned_cols=238 Identities=25% Similarity=0.363 Sum_probs=217.9 Q ss_pred cCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCc Q psy13054 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPN 950 (1128) Q Consensus 871 ~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~ 950 (1128) ++ |+||||++.|+|+|+||+++|++++|.++| ++.++.+||||+++++|++.|++..+++.+++|+|.+ .. T Consensus 46 ~~-~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-------~~ 116 (290) T 3gvx_A 46 LG-KRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQ-------SP 116 (290) T ss_dssp CC-SSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC-------CC T ss_pred hh-hhhHHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhccccc-------CC Confidence 44 999999999999999999999998776666 4889999999999999999999999999999999973 12 Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) +.+++|+||||||+|.||+++|++|++|||+|++||++...... +... ++++++++||+|++|+|++++|+++|+ T Consensus 117 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~----~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~ 192 (290) T 3gvx_A 117 TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV----DVISESPADLFRQSDFVLIAIPLTDKTRGMVN 192 (290) T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC----SEECSSHHHHHHHCSEEEECCCCCTTTTTCBS T ss_pred ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc----ccccCChHHHhhccCeEEEEeeccccchhhhh Confidence 35899999999999999999999999999999999977654331 3344 899999999999999999999999999 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCC-CCcHHHHHHHH Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTS-SATKAVRDEKS 1108 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHia-g~t~e~~~~~~ 1108 (1128) ++.|+.||+|++|||+|||+++|++||+++|++|+|.||+||||++||+ +|||++|||++|||+| ++|.++.+++. T Consensus 193 ~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilTPHiag~~t~e~~~~~~ 269 (290) T 3gvx_A 193 SRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNAILSPHVAGGMSGEIMDIAI 269 (290) T ss_dssp HHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSEEECCSCSSCBTTBCCHHHH T ss_pred HHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc---cchhhhhhhhcCccccCCccchHHHHHH Confidence 9999999999999999999999999999999999999999999999997 8999999999999999 99999999999 Q ss_pred HHHHHHHHHHHcCCCC Q psy13054 1109 STSAENIIRGYKGEPM 1124 (1128) Q Consensus 1109 ~~~~~nl~~~l~G~~l 1124 (1128) +.+++||.+|++|+.- T Consensus 270 ~~~~~ni~~~~~~~~~ 285 (290) T 3gvx_A 270 QLAFENVRNFFEGEGH 285 (290) T ss_dssp HHHHHHHHHHTC---- T ss_pred HHHHHHHHhhhcCCCc Confidence 9999999999999853 |
>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
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Probab=100.00 E-value=1.3e-50 Score=464.79 Aligned_cols=290 Identities=22% Similarity=0.282 Sum_probs=233.6 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHH-hcCCceEEEeCCCCCCCHHHHhccCCCceEEEEc-CcccccccHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIE-KLKGCSALLCNPHQKVDKEVLDRSGENLKVIATF-SVGHDHLHLD 120 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~-~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~-gvG~DnIDl~ 120 (1128) +.++.++.|+ +.+++..+.. .+.+++++ .+.++++++. ..++++++|+++ |+||+|+++ |+||||||++ T Consensus 44 ~~~~~~~~L~--~~~~v~~~~~----~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~-p~Lk~I~~~~~~G~d~iD~~ 114 (365) T 4hy3_A 44 FSDEARAALH--SKYEIVEADP----ENIAGLGDDILGRARYIIG--QPPLSAETLARM-PALRSILNVESNLLNNMPYE 114 (365) T ss_dssp CCHHHHHHHH--HHSEEEECCG----GGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTC-TTCCEEECCSSSCCSCSCTT T ss_pred CCHHHHHHHh--CCcEEEECCC----CChHHHHHHhhCCeEEEEe--CCCCCHHHHhhC-CCCeEEEEecccccCcccHH Confidence 4556677765 4578875432 23455544 3467888775 358999999986 899999975 8999999999 Q ss_pred HHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccc Q psy13054 121 EIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNE 200 (1128) Q Consensus 121 aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 200 (1128) +|+++||.|+|+|++++++||||++++||+++|++..+++.++++ .| .|... .. T Consensus 115 ~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g-~~----------~w~~~---------------~~ 168 (365) T 4hy3_A 115 VLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEG-TE----------LWGGE---------------GN 168 (365) T ss_dssp HHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHT-CC----------CCSSS---------------ST T ss_pred HHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcC-Cc----------ccccc---------------cc Confidence 999999999999999999999999999999999999988877654 11 13210 01 Q ss_pred ccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcc Q psy13054 201 ICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNP 280 (1128) Q Consensus 201 ~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va 280 (1128) ..+..+.||++||||+|. ||+.+++++++|++. T Consensus 169 ~~~~~l~gktvGIIGlG~---------------------------------IG~~vA~~l~~fG~~-------------- 201 (365) T 4hy3_A 169 ASARLIAGSEIGIVGFGD---------------------------------LGKALRRVLSGFRAR-------------- 201 (365) T ss_dssp TSCCCSSSSEEEEECCSH---------------------------------HHHHHHHHHTTSCCE-------------- T ss_pred ccccccCCCEEEEecCCc---------------------------------ccHHHHHhhhhCCCE-------------- Confidence 123346678999999973 688889998887553 Q ss_pred ccccCCccccceeeccccccccc-ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCC Q psy13054 281 KWRMGSKTDTNHYFGYNWFERSN-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 359 (1128) Q Consensus 281 ~~~~g~~~~~~~~~g~~~~~~~~-~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~ 359 (1128) +++|+++.+.. ..+.|+++++|+|++++||||++|||+|++|+|+||++.|++||||++|||+|||+ T Consensus 202 ------------V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~ 269 (365) T 4hy3_A 202 ------------IRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRAD 269 (365) T ss_dssp ------------EEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGG T ss_pred ------------EEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCc Confidence 34455443221 34567888899999999999999999999999999999999999999999999999 Q ss_pred ccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH Q psy13054 360 LLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128) Q Consensus 360 lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128) +|||+||++||++|+|+ ||||||++||+|.+||||++||| ++|||++++|.+ ..+++|+.+|+++.. T Consensus 270 ~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nv------ilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~ 342 (365) T 4hy3_A 270 VVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGF------IRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLP 342 (365) T ss_dssp GSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTE------EECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCC T ss_pred hhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCE------EECCccccCHHHHHHHHHHHHHHHHHHHHcCCC Confidence 99999999999999998 89999999999999999999999 999999999985 445788888877653 |
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
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Probab=100.00 E-value=1.2e-50 Score=459.13 Aligned_cols=265 Identities=21% Similarity=0.276 Sum_probs=220.7 Q ss_pred CHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHH Q psy13054 70 PRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAI 149 (1128) Q Consensus 70 ~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL 149 (1128) +.+++.+.++++|+++++ .++++++|+++ |+||+|+++|+||||||++++++ ||.|+|+||+++++||||++++|| T Consensus 37 ~~~~~~~~~~~ad~li~~--~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L 112 (324) T 3hg7_A 37 NQSDAEKLIGEAHILMAE--PARAKPLLAKA-NKLSWFQSTYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLL 112 (324) T ss_dssp SHHHHHHHGGGCSEEEEC--HHHHGGGGGGC-TTCCEEEESSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHH T ss_pred ChhHHHHHhCCCEEEEEC--CCCCHHHHhhC-CCceEEEECCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHH Confidence 467888999999999984 35678899986 89999999999999999998864 999999999999999999999999 Q ss_pred HHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCccc Q psy13054 150 AVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKW 229 (1128) Q Consensus 150 ~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w 229 (1128) +++|++..+++.+++ +.|... .+..+.|+++||||+|. T Consensus 113 ~~~R~~~~~~~~~~~-------------g~W~~~------------------~~~~l~g~tvGIIGlG~----------- 150 (324) T 3hg7_A 113 SLMRQLPLYREQQKQ-------------RLWQSH------------------PYQGLKGRTLLILGTGS----------- 150 (324) T ss_dssp HHHTTHHHHHHHHHT-------------TCCCCC------------------CCCCSTTCEEEEECCSH----------- T ss_pred HHHhChHHHHHHHhh-------------CCCcCC------------------CCcccccceEEEEEECH----------- Confidence 999999998886654 234311 11235678999999973 Q ss_pred ccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccc-cccC Q psy13054 230 RMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNG-TALG 308 (1128) Q Consensus 230 ~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~-~~~g 308 (1128) ||+.+++++++|++. +++|++..+... .... T Consensus 151 ----------------------IG~~vA~~l~~~G~~--------------------------V~~~dr~~~~~~~~~~~ 182 (324) T 3hg7_A 151 ----------------------IGQHIAHTGKHFGMK--------------------------VLGVSRSGRERAGFDQV 182 (324) T ss_dssp ----------------------HHHHHHHHHHHTTCE--------------------------EEEECSSCCCCTTCSEE T ss_pred ----------------------HHHHHHHHHHhCCCE--------------------------EEEEcCChHHhhhhhcc Confidence 688889998887654 233333221111 1112 Q ss_pred CcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCC Q psy13054 309 AQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL 388 (1128) Q Consensus 309 ~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl 388 (1128) ..+.+|+|++++||||++|||+|++|+|+||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||+ T Consensus 183 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl 262 (324) T 3hg7_A 183 YQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL 262 (324) T ss_dssp ECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSC T ss_pred cccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCC Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCcccCCCCCCCCcccccccCCCCChh----hhHHHHHHHHHHHHHH Q psy13054 389 PADHPLVQLDNCGGAGLDVMIPEPLPADHP----LVQLDNCEEFFEELFD 434 (1128) Q Consensus 389 ~~~~pL~~lpNvg~~~~~v~tph~~~~t~~----~~~~~n~~~~~~~~~~ 434 (1128) |.+||||++||| ++|||++++|.+ ....+|+.+|+++... T Consensus 263 ~~~~pL~~~~nv------ilTPHia~~t~~~~~~~~~~~nl~~~~~G~~~ 306 (324) T 3hg7_A 263 PADSPLWGQPNL------IITPHNSAYSFPDDVAQIFVRNYIRFIDGQPL 306 (324) T ss_dssp CTTCTTTTCTTE------EECCSCSSCCCHHHHHHHHHHHHHHHHTTCCC T ss_pred CCCChhhcCCCE------EEeCCCccccHHHHHHHHHHHHHHHHHcCCCC Confidence 999999999999 999999999874 3446777777776543 |
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
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Probab=100.00 E-value=3.5e-49 Score=449.81 Aligned_cols=290 Identities=23% Similarity=0.354 Sum_probs=237.1 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128) +.+...+.++. ..+++..++. .+.+++.+.++++|+++++..+++++++|+++ |+||+|+++|+||||||+++| T Consensus 35 ~~~~~~~~l~~-~~~~v~~~~~----~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~ 108 (335) T 2g76_A 35 LDPCCRKILQD-GGLQVVEKQN----LSKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAA 108 (335) T ss_dssp CCHHHHHHHHH-HTCEEEECCS----CCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-SSCCEEEESSSSCTTBCHHHH T ss_pred CCHHHHHHHHh-CCCEEEECCC----CCHHHHHHHhcCceEEEEcCCCCCCHHHHhhC-CCCcEEEECCCCcchhChHHH Confidence 33444455432 2356666542 46788999999999999987778999999986 899999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128) +++||.|+|+|++++++||||++++||++.|+++.+++.++++ .|... ... T Consensus 109 ~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-------------~W~~~----------------~~~ 159 (335) T 2g76_A 109 TRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG-------------KWERK----------------KFM 159 (335) T ss_dssp HHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-------------CCCTG----------------GGC T ss_pred HhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcC-------------CCCcc----------------CCC Confidence 9999999999999999999999999999999999988877653 33210 011 Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128) Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128) +..+.++++||||+|. ||+.++++++++++. T Consensus 160 ~~~l~g~tvgIIGlG~---------------------------------IG~~vA~~l~~~G~~---------------- 190 (335) T 2g76_A 160 GTELNGKTLGILGLGR---------------------------------IGREVATRMQSFGMK---------------- 190 (335) T ss_dssp BCCCTTCEEEEECCSH---------------------------------HHHHHHHHHHTTTCE---------------- T ss_pred CcCCCcCEEEEEeECH---------------------------------HHHHHHHHHHHCCCE---------------- Confidence 2345678999999973 678888888876543 Q ss_pred ccCCccccceeecccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCcc Q psy13054 283 RMGSKTDTNHYFGYNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 361 (1128) Q Consensus 283 ~~g~~~~~~~~~g~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lV 361 (1128) +++|++.... ...+.|+++++++|++++||+|++|||+|++|+++||++.|++||+|++|||+|||++| T Consensus 191 ----------V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vv 260 (335) T 2g76_A 191 ----------TIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIV 260 (335) T ss_dssp ----------EEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSB T ss_pred ----------EEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCcccc Confidence 3444433222 23356777789999999999999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHH Q psy13054 362 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELF 433 (1128) Q Consensus 362 De~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~ 433 (1128) |++||++||++|+|+||+||||++|| +.++|||++||+ ++|||++++|.+ ...++|+.+|+++.. T Consensus 261 d~~aL~~aL~~g~i~gA~lDV~~~EP-~~~~~L~~~~nv------ilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~ 331 (335) T 2g76_A 261 DEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENV------ISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKS 331 (335) T ss_dssp CHHHHHHHHHHTSEEEEEESCCSSSS-CSCCHHHHSTTE------EECSSCTTCBHHHHHHHHHHHHHHHHHHC---- T ss_pred CHHHHHHHHHhCCccEEEEeecCCCC-CCCchHHhCCCE------EECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCC Confidence 99999999999999999999999999 678999999999 999999999885 345678888777653 |
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
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Probab=100.00 E-value=5.4e-49 Score=452.13 Aligned_cols=244 Identities=25% Similarity=0.293 Sum_probs=219.5 Q ss_pred HhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccH Q psy13054 850 LLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 928 (1128) Q Consensus 850 ~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~ 928 (1128) .++++++..+. .+++++++|+ + ++||||++.++|+||||+++|+++||.|+|+||+|+.+||||+++++|++.|+. T Consensus 37 ~l~~ad~li~~~~~~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~- 113 (381) T 3oet_A 37 ELNHADALMVRSVTKVNESLLS-G-TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD- 113 (381) T ss_dssp HHTTCSEEEECTTSCBSHHHHT-T-SCCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT- T ss_pred HHCCCEEEEECCCCCCCHHHHc-C-CCCEEEEEccccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc- Confidence 35566655443 3578999999 4 679999999999999999999999999999999999999999999999999852 Q ss_pred HHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhh Q psy13054 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLC 1008 (1128) Q Consensus 929 ~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell 1008 (1128) | .+++||||||||+|+||+++|++|++|||+|++||++... ...+....++++++ T Consensus 114 --------g--------------~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~---~~~~~~~~sl~ell 168 (381) T 3oet_A 114 --------G--------------FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAA---RGDEGDFRTLDELV 168 (381) T ss_dssp --------T--------------CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHH---TTCCSCBCCHHHHH T ss_pred --------C--------------CccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHH---hccCcccCCHHHHH Confidence 1 2489999999999999999999999999999999864221 12345667999999 Q ss_pred ccCCEEEEecCCCcc----cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCcc Q psy13054 1009 AESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPL 1084 (1128) Q Consensus 1009 ~~sDvV~l~lPlt~~----T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL 1084 (1128) ++||+|++|+|++++ |+|+|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||+|. ++| T Consensus 169 ~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~-~~L 247 (381) T 3oet_A 169 QEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLN-VAL 247 (381) T ss_dssp HHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCC-HHH T ss_pred hhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCc-chh Confidence 999999999999999 999999999999999999999999999999999999999999999999999999874 679 Q ss_pred ccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC Q psy13054 1085 VQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1085 ~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) |.++ +++|||+||+|.|+..++..++++||.+|+.+.+ T Consensus 248 ~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~ 285 (381) T 3oet_A 248 LEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQ 285 (381) T ss_dssp HHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCC T ss_pred hhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCc Confidence 9874 8999999999999999999999999999998754 |
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
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Probab=100.00 E-value=9.7e-50 Score=452.17 Aligned_cols=285 Identities=21% Similarity=0.309 Sum_probs=226.8 Q ss_pred ccchhhhhhhhccC-CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHH-hccCCCceEEEEcCcccccccH Q psy13054 42 LLVPESLSKLRFNS-RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVL-DRSGENLKVIATFSVGHDHLHL 119 (1128) Q Consensus 42 ~l~~~~l~~l~~~~-~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL-~~~~~~LK~I~~~gvG~DnIDl 119 (1128) .+.++.++.|+... .+++...+. .+. +.++++|+++++. .++ +++| +++ |+||+|+++|+||||||+ T Consensus 9 ~~~~~~~~~L~~~~~~~~~~~~~~----~~~----~~~~~ad~l~~~~-~~~-~~~l~~~~-~~Lk~I~~~~~G~d~id~ 77 (324) T 3evt_A 9 ATKPEQLQQLQTTYPDWTFKDAAA----VTA----ADYDQIEVMYGNH-PLL-KTILARPT-NQLKFVQVISAGVDYLPL 77 (324) T ss_dssp CCCHHHHHHHHHHCTTCEEEETTS----CCT----TTGGGEEEEESCC-THH-HHHHHSTT-CCCCEEECSSSCCTTSCH T ss_pred CCCHHHHHHHHhhCCCeEEecCCc----cCh----HHhCCcEEEEECC-cCh-HHHHHhhC-CCceEEEECCccccccCH Confidence 56677777775221 234433221 122 3467899998764 467 9999 554 899999999999999999 Q ss_pred HHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHH-HHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcc Q psy13054 120 DEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQR-HNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRK 198 (1128) Q Consensus 120 ~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 198 (1128) ++|+++||.|+|+||+++++||||++++||+++|++..+ ++..++ +.|.... T Consensus 78 ~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~-------------~~W~~~~-------------- 130 (324) T 3evt_A 78 KALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA-------------RQWALPM-------------- 130 (324) T ss_dssp HHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTT-------------CCSSCSS-------------- T ss_pred HHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhc-------------CCcccCC-------------- Confidence 999999999999999999999999999999999999987 553322 3453210 Q ss_pred ccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCC Q psy13054 199 NEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQ 278 (1128) Q Consensus 199 ~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~ 278 (1128) .+..+.||++||||+|. ||+.+++++++|++. T Consensus 131 ---~~~~l~gktvGIiGlG~---------------------------------IG~~vA~~l~~~G~~------------ 162 (324) T 3evt_A 131 ---TTSTLTGQQLLIYGTGQ---------------------------------IGQSLAAKASALGMH------------ 162 (324) T ss_dssp ---CCCCSTTCEEEEECCSH---------------------------------HHHHHHHHHHHTTCE------------ T ss_pred ---CCccccCCeEEEECcCH---------------------------------HHHHHHHHHHhCCCE------------ Confidence 12345678999999973 688888988877653 Q ss_pred ccccccCCccccceeeccccccccc-ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecC Q psy13054 279 NPKWRMGSKTDTNHYFGYNWFERSN-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 357 (1128) Q Consensus 279 va~~~~g~~~~~~~~~g~~~~~~~~-~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaR 357 (1128) +++|++..... .....+.+.+|+|++++||+|++|||+|++|+|+||++.|++||+|++|||+|| T Consensus 163 --------------V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aR 228 (324) T 3evt_A 163 --------------VIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGR 228 (324) T ss_dssp --------------EEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSC T ss_pred --------------EEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCC Confidence 23333322111 001113456899999999999999999999999999999999999999999999 Q ss_pred CCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHH Q psy13054 358 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEE 431 (1128) Q Consensus 358 G~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~ 431 (1128) |++|||+||++||++|+|+||+||||++||+|.++|||++||| ++|||++++|.+ ...++|+.+|+++ T Consensus 229 G~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nv------ilTPHia~~t~~~~~~~~~~~~~nl~~~l~~ 302 (324) T 3evt_A 229 GPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDV------LITPHISGQIAHFRATVFPIFAANFAQFVKD 302 (324) T ss_dssp GGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSE------EECCSCTTCCCCHHHHHHHHHHHHHHHHHHH T ss_pred ChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCE------EEcCccccChHHHHHHHHHHHHHHHHHHHhC Confidence 9999999999999999999999999999999999999999999 999999999874 4557899998875 Q ss_pred H Q psy13054 432 L 432 (1128) Q Consensus 432 ~ 432 (1128) . T Consensus 303 ~ 303 (324) T 3evt_A 303 G 303 (324) T ss_dssp S T ss_pred C Confidence 4 |
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
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Probab=100.00 E-value=8e-48 Score=464.35 Aligned_cols=279 Identities=28% Similarity=0.416 Sum_probs=255.4 Q ss_pred CchHHHHHhhccceeEEe-ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHH Q psy13054 843 IGLETAKLLKAFKVSKIL-YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAI 921 (1128) Q Consensus 843 ~~~e~~~~l~~~~~~~~~-~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL 921 (1128) ..+++.+.++++++..+. .+++++++|+++ |+||||++.|+|+||+|+++|.++||.|+|+|++|+.+||||++++|| T Consensus 34 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l 112 (529) T 1ygy_A 34 DRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLL 112 (529) T ss_dssp SHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHH T ss_pred CHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCcEEEECCcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHH Confidence 345677778888866554 468999999997 999999999999999999999999999999999999999999999999 Q ss_pred HHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc Q psy13054 922 AVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL 1001 (1128) Q Consensus 922 ~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~ 1001 (1128) ++.|+++++++.+++|+|.+. .....+++|+||||||+|+||+.+|++|++|||+|++||++.....+.+.|+.. T Consensus 113 ~~~R~~~~~~~~~~~g~w~~~-----~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~ 187 (529) T 1ygy_A 113 AASRQIPAADASLREHTWKRS-----SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIEL 187 (529) T ss_dssp HHHTTHHHHHHHHHTTCCCGG-----GCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEE T ss_pred HHHhhhHHHHHHHHhCCCccc-----CcCccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEE Confidence 999999999999999999731 122348999999999999999999999999999999999876543355668777 Q ss_pred cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC Q psy13054 1002 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 1081 (1128) Q Consensus 1002 ~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~ 1081 (1128) +++++++++||+|++|+|++++|+++++++.++.||+|+++||+|||+++|+++|+++|++|+|+||++|||+.||. ++ T Consensus 188 ~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~-~~ 266 (529) T 1ygy_A 188 LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TD 266 (529) T ss_dssp CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSC-SC T ss_pred cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCC-CC Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999995 68 Q ss_pred CccccCCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1082 HPLVQLDNCVLTPHTSSATKAVRDEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1082 ~pL~~~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) +|||++||+++|||++|+|.++.++++..+++|+.+|+.|+++.|.| T Consensus 267 ~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v 313 (529) T 1ygy_A 267 SPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAV 313 (529) T ss_dssp CGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC T ss_pred chHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCccc Confidence 99999999999999999999999999999999999999999876543 |
>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
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Probab=100.00 E-value=3.7e-48 Score=437.29 Aligned_cols=287 Identities=29% Similarity=0.419 Sum_probs=234.9 Q ss_pred chhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHH Q psy13054 44 VPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIK 123 (1128) Q Consensus 44 ~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~ 123 (1128) .++.++.++. ..+++...+ ..+.+++.+.++++|+++++...++++++|+++ |+||+|+++|+|+||||+++|+ T Consensus 13 ~~~~~~~l~~-~~~~~~~~~----~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~ 86 (307) T 1wwk_A 13 HEKAIQVLKD-AGLEVIYEE----YPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA-PKLKVIARAGVGLDNIDVEAAK 86 (307) T ss_dssp CHHHHHHHHH-TTCEEEECS----SCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTC-TTCCEEEESSSCCTTBCHHHHH T ss_pred CHHHHHHHHh-CCeEEEeCC----CCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCeEEEECCccccccCHHHHH Confidence 3444455532 246665432 246788999999999999876667999999986 8999999999999999999999 Q ss_pred hCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccc Q psy13054 124 SRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQ 203 (1128) Q Consensus 124 erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 203 (1128) ++||.|+|+||+++++||||++++||+++|+++.+++.++++ .|... ...+ T Consensus 87 ~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g-------------~w~~~----------------~~~~ 137 (307) T 1wwk_A 87 EKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREG-------------VWAKK----------------EAMG 137 (307) T ss_dssp HHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTT-------------CCCTT----------------TCCB T ss_pred hCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcC-------------CCCcc----------------CcCC Confidence 999999999999999999999999999999999988766542 34210 0112 Q ss_pred cccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccc Q psy13054 204 KYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWR 283 (1128) Q Consensus 204 ~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~ 283 (1128) ..+.++++||||+|. +|+.++++++++++. T Consensus 138 ~~l~g~~vgIiG~G~---------------------------------IG~~~A~~l~~~G~~----------------- 167 (307) T 1wwk_A 138 IELEGKTIGIIGFGR---------------------------------IGYQVAKIANALGMN----------------- 167 (307) T ss_dssp CCCTTCEEEEECCSH---------------------------------HHHHHHHHHHHTTCE----------------- T ss_pred cccCCceEEEEccCH---------------------------------HHHHHHHHHHHCCCE----------------- Confidence 345678999999973 677888888776543 Q ss_pred cCCccccceeecccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccC Q psy13054 284 MGSKTDTNHYFGYNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD 362 (1128) Q Consensus 284 ~g~~~~~~~~~g~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVD 362 (1128) +++|++.... ...+.|+++++++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++|| T Consensus 168 ---------V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd 238 (307) T 1wwk_A 168 ---------ILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVD 238 (307) T ss_dssp ---------EEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBC T ss_pred ---------EEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccC Confidence 3344433222 123457777899999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhh------hHHHHHHHHHH Q psy13054 363 QEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFE 430 (1128) Q Consensus 363 e~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~ 430 (1128) ++||++||++|+|+||+||||++||++.++|||++||+ ++|||++++|.+. ...+|+.+|++ T Consensus 239 ~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nv------iltPh~~~~t~~~~~~~~~~~~~nl~~~~~ 306 (307) T 1wwk_A 239 TNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNV------VLTPHIGASTVEAQERAGVEVAEKVVKILK 306 (307) T ss_dssp HHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTE------EECSSCTTCBHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCE------EECCccccCcHHHHHHHHHHHHHHHHHHHc Confidence 99999999999999999999999999999999999999 9999999998853 34566666553 |
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
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Probab=100.00 E-value=2.2e-48 Score=443.43 Aligned_cols=289 Identities=24% Similarity=0.284 Sum_probs=232.9 Q ss_pred hhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCC--ceEEEEcCcccccccHHHHH Q psy13054 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGEN--LKVIATFSVGHDHLHLDEIK 123 (1128) Q Consensus 46 ~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~--LK~I~~~gvG~DnIDl~aa~ 123 (1128) +.++.+.....+++..++. ..+.+++.+.++++|+++++..+++++++|+++ |+ ||+|+++|+||||||+++|+ T Consensus 14 ~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~d~id~~~~~ 89 (331) T 1xdw_A 14 PIFEACNKEFGYDIKCVPD---YLNTKETAEMAAGFDAVILRGNCFANKQNLDIY-KKLGVKYILTRTAGTDHIDKEYAK 89 (331) T ss_dssp HHHHHHGGGTCCEEEECSC---CSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHH-HHHTCCEEEESSSCCTTBCHHHHH T ss_pred HHHHHHHHhcCeEEEECCC---CCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhC-cccCceEEEEccccccccCHHHHH Confidence 4445543222356666543 234578889999999999987778999999987 66 99999999999999999999 Q ss_pred hCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccc Q psy13054 124 SRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQ 203 (1128) Q Consensus 124 erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 203 (1128) ++||.|+|+||+++++||||++++||++.|+++.+++.++++ .| .|.. ...+ T Consensus 90 ~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-~w----------~~~~-----------------~~~~ 141 (331) T 1xdw_A 90 ELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKK-NF----------KVDA-----------------FMFS 141 (331) T ss_dssp HTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTT-CC----------CCCS-----------------TTCC T ss_pred hCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcC-CC----------cccc-----------------CcCc Confidence 999999999999999999999999999999999988766543 22 1200 0112 Q ss_pred cccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccc Q psy13054 204 KYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWR 283 (1128) Q Consensus 204 ~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~ 283 (1128) ..+.++++||||+|. ||+.++++++++++. T Consensus 142 ~~l~g~~vgIiG~G~---------------------------------IG~~~A~~l~~~G~~----------------- 171 (331) T 1xdw_A 142 KEVRNCTVGVVGLGR---------------------------------IGRVAAQIFHGMGAT----------------- 171 (331) T ss_dssp CCGGGSEEEEECCSH---------------------------------HHHHHHHHHHHTTCE----------------- T ss_pred cCCCCCEEEEECcCH---------------------------------HHHHHHHHHHHCCCE----------------- Confidence 235578999999973 678888888777553 Q ss_pred cCCccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCH Q psy13054 284 MGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363 (1128) Q Consensus 284 ~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe 363 (1128) +++|++.......+ .++++++++++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||+ T Consensus 172 ---------V~~~d~~~~~~~~~-~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~ 241 (331) T 1xdw_A 172 ---------VIGEDVFEIKGIED-YCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDT 241 (331) T ss_dssp ---------EEEECSSCCCSCTT-TCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCH T ss_pred ---------EEEECCCccHHHHh-ccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccH Confidence 23333322211111 25667999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHcCCeeEEEEecCCCCCC--CCC-------C----CcccC-CCCCCCCcccccccCCCCChh------hhHHH Q psy13054 364 EALVEFLKDKKIGGAGLDVMIPEPL--PAD-------H----PLVQL-DNCGGAGLDVMIPEPLPADHP------LVQLD 423 (1128) Q Consensus 364 ~AL~~AL~sG~IagAaLDVfe~EPl--~~~-------~----pL~~l-pNvg~~~~~v~tph~~~~t~~------~~~~~ 423 (1128) +||++||++|+|+||+||||++||+ +.+ + |||++ ||| ++|||++++|.+ ...++ T Consensus 242 ~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nv------ilTPHia~~t~~~~~~~~~~~~~ 315 (331) T 1xdw_A 242 EAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRV------LITPHLGSYTDEAVKNMVEVSYQ 315 (331) T ss_dssp HHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTE------EECCSCTTCSHHHHHHHHHHHHH T ss_pred HHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCE------EEcCccccChHHHHHHHHHHHHH Confidence 9999999999999999999999994 333 3 79999 999 999999999985 35678 Q ss_pred HHHHHHHHH Q psy13054 424 NCEEFFEEL 432 (1128) Q Consensus 424 n~~~~~~~~ 432 (1128) |+.+|+++. T Consensus 316 nl~~~~~g~ 324 (331) T 1xdw_A 316 NLKDLAETG 324 (331) T ss_dssp HHHHHHHHS T ss_pred HHHHHHcCC Confidence 999988875 |
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
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Probab=100.00 E-value=2e-48 Score=448.59 Aligned_cols=282 Identities=23% Similarity=0.315 Sum_probs=229.1 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCC--CCCCHHHHhccCCCceEEEEcCcccccccHHHHHhC--CcEEEe Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPH--QKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSR--GIRVGT 131 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~--~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~er--GI~V~n 131 (1128) .+++..++.. ..+.+++.+.++++|++++... .++++++|+++ |+||+|+++|+|+||||+++|+++ ||.|+| T Consensus 38 ~~~v~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n 114 (364) T 2j6i_A 38 GHELITTSDK--EGGNSVLDQHIPDADIIITTPFHPAYITKERIDKA-KKLKLVVVAGVGSDHIDLDYINQTGKKISVLE 114 (364) T ss_dssp TCEEEEESCC--SSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHHTCCCEEEE T ss_pred CCEEEEcCCC--CCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhC-CCCeEEEECCcccccccHHHHHhcCCCEEEEE Confidence 4677776532 1245789999999999998542 46999999986 899999999999999999999999 999999 Q ss_pred cCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccccccccccee Q psy13054 132 VGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAY 211 (1128) Q Consensus 132 ~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~ 211 (1128) +|++++++||||++++||++.|++..+++.++++ .| ..... ...+..+.|+++ T Consensus 115 ~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g-~W------------~~~~~--------------~~~~~~l~g~tv 167 (364) T 2j6i_A 115 VTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINH-DW------------EVAAI--------------AKDAYDIEGKTI 167 (364) T ss_dssp CTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-CC------------CHHHH--------------HTTCCCSTTCEE T ss_pred CCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhC-CC------------CcCcc--------------cCCcccCCCCEE Confidence 9999999999999999999999999988877653 33 21000 001223557889 Q ss_pred eeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccc Q psy13054 212 LLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTN 291 (1128) Q Consensus 212 giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~ 291 (1128) ||||+|. ||+.++++++++++. T Consensus 168 gIIG~G~---------------------------------IG~~vA~~l~~~G~~------------------------- 189 (364) T 2j6i_A 168 ATIGAGR---------------------------------IGYRVLERLVPFNPK------------------------- 189 (364) T ss_dssp EEECCSH---------------------------------HHHHHHHHHGGGCCS------------------------- T ss_pred EEECcCH---------------------------------HHHHHHHHHHhCCCc------------------------- Confidence 9999873 678888888776542 Q ss_pred eeecccccc--cccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHH Q psy13054 292 HYFGYNWFE--RSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVE 368 (1128) Q Consensus 292 ~~~g~~~~~--~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~ 368 (1128) ++++|++.. .+...+.|++++ +++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++ T Consensus 190 ~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~ 269 (364) T 2j6i_A 190 ELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAA 269 (364) T ss_dssp EEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHH T ss_pred EEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHH Confidence 023344322 112334566665 89999999999999999999999999999999999999999999999999999999 Q ss_pred HHHcCCeeEEEEecCCCCCCCCCCCcccC--C---CCCCCCcccccccCCCCChhh------hHHHHHHHHHHH Q psy13054 369 FLKDKKIGGAGLDVMIPEPLPADHPLVQL--D---NCGGAGLDVMIPEPLPADHPL------VQLDNCEEFFEE 431 (1128) Q Consensus 369 AL~sG~IagAaLDVfe~EPl~~~~pL~~l--p---Nvg~~~~~v~tph~~~~t~~~------~~~~n~~~~~~~ 431 (1128) ||++|+|+||+||||++||+|.+||||.+ | || ++|||++++|.+. ...+|+.+|+++ T Consensus 270 aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nv------ilTPHia~~t~e~~~~~~~~~~~nl~~~~~g 337 (364) T 2j6i_A 270 ALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN------AMTPHYSGTTLDAQTRYAQGTVNILESFFTG 337 (364) T ss_dssp HHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCE------EECCSCGGGSHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcE------EECCccCcCCHHHHHHHHHHHHHHHHHHHcC Confidence 99999999999999999999999999999 9 99 9999999998764 234556555543 |
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
---|
Probab=100.00 E-value=1.1e-48 Score=446.30 Aligned_cols=278 Identities=20% Similarity=0.278 Sum_probs=228.6 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCC--ceEEEEcCcccccccHHHHHhCCcEEEecC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGEN--LKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~--LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128) .+++..++.. ..+++.+.++++|+++++..+++++++|+++ |+ ||+|+++|+||||||+++|+++||.|+|+| T Consensus 24 ~~~v~~~~~~----~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p 98 (333) T 1dxy_A 24 GNTLEYHTEF----LDENTVEWAKGFDGINSLQTTPYAAGVFEKM-HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVP 98 (333) T ss_dssp CCEEEECSSC----CCTTGGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCT T ss_pred CeEEEEcCCC----ChHHHHHHhcCCeEEEEcCCCCCCHHHHHhC-cccCceEEEEcCcccCccCHHHHHhCCCEEEeCC Confidence 3567666532 2346778899999999987778999999987 56 999999999999999999999999999999 Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128) Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128) |+++++||||++++||++.|+++.+++.++++ .|. |.. ...+..+.++++|| T Consensus 99 ~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-~w~----------~~~-----------------~~~~~~l~g~~vgI 150 (333) T 1dxy_A 99 AYSPAAIAEFALTDTLYLLRNMGKVQAQLQAG-DYE----------KAG-----------------TFIGKELGQQTVGV 150 (333) T ss_dssp TSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-CHH----------HHT-----------------CCCCCCGGGSEEEE T ss_pred CCCchHHHHHHHHHHHHHhhhHHHHHHHHHcC-Ccc----------ccc-----------------CCCccCCCCCEEEE Confidence 99999999999999999999999998877764 341 100 00122355789999 Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128) Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128) ||+|. ||+.++++++++++. + T Consensus 151 iG~G~---------------------------------IG~~~A~~l~~~G~~--------------------------V 171 (333) T 1dxy_A 151 MGTGH---------------------------------IGQVAIKLFKGFGAK--------------------------V 171 (333) T ss_dssp ECCSH---------------------------------HHHHHHHHHHHTTCE--------------------------E T ss_pred ECcCH---------------------------------HHHHHHHHHHHCCCE--------------------------E Confidence 99973 678888888877543 2 Q ss_pred ecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcC Q psy13054 294 FGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 (1128) Q Consensus 294 ~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG 373 (1128) ++|++.......+ .+++++++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++||++| T Consensus 172 ~~~d~~~~~~~~~-~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g 250 (333) T 1dxy_A 172 IAYDPYPMKGDHP-DFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG 250 (333) T ss_dssp EEECSSCCSSCCT-TCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT T ss_pred EEECCCcchhhHh-ccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC Confidence 3344332221112 256679999999999999999999999999999999999999999999999999999999999999 Q ss_pred CeeEEEEecCCCCCC--C--------CC---CCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 374 KIGGAGLDVMIPEPL--P--------AD---HPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 374 ~IagAaLDVfe~EPl--~--------~~---~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) +|+||+||||++||+ + ++ +|||++||| ++|||++++|.+ ...++|+.+|+++. T Consensus 251 ~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nv------i~TPHia~~t~e~~~~~~~~~~~nl~~~~~g~ 322 (333) T 1dxy_A 251 KLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNV------VLSPHIAYYTETAVHNMVYFSLQHLVDFLTKG 322 (333) T ss_dssp SEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTE------EECSSCTTCSHHHHHHHHHHHHHHHHHHHHHS T ss_pred CccEEEEecCCCCCCcccccccccccCccchhHHhcCCCE------EECCccccChHHHHHHHHHHHHHHHHHHHcCC Confidence 999999999999993 1 12 589999999 999999999986 35678999988875 |
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
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Probab=100.00 E-value=1.8e-47 Score=433.98 Aligned_cols=293 Identities=25% Similarity=0.348 Sum_probs=239.0 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCC-ceEEEEcCcccccccHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGEN-LKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~-LK~I~~~gvG~DnIDl~a 121 (1128) +.++.++.++ +.+++..++. ....+.+++.+.++++|+++++..+++++++|+++ |+ ||+|+++|+||||||+++ T Consensus 10 ~~~~~~~~l~--~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~Lk~I~~~~~G~d~id~~~ 85 (320) T 1gdh_A 10 LPEAAMARAR--ESYDVIAHGD-DPKITIDEMIETAKSVDALLITLNEKCRKEVIDRI-PENIKCISTYSIGFDHIDLDA 85 (320) T ss_dssp CCHHHHHHHH--TTSEEEECCS-TTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHS-CTTCCEEEEESSCCTTBCHHH T ss_pred CCHHHHHHHH--hcCCEEEecC-CCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhC-CccceEEEECCcccccccHHH Confidence 4455566654 4567766543 22356789999999999999876678999999987 67 999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128) |+++||.|+|+||+++++||||++++||++.|+++.+++.++++ .|..... ... T Consensus 86 ~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-------------~w~~~~~-------------~~~ 139 (320) T 1gdh_A 86 CKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTR-------------SWPGWEP-------------LEL 139 (320) T ss_dssp HHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-------------CCCCCCT-------------TTT T ss_pred HHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcC-------------CCCcccc-------------ccc Confidence 99999999999999999999999999999999999988877653 2321000 001 Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128) Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128) .+..+.++++||||+|. ||+.++++++++++. T Consensus 140 ~~~~l~g~~vgIIG~G~---------------------------------IG~~~A~~l~~~G~~--------------- 171 (320) T 1gdh_A 140 VGEKLDNKTLGIYGFGS---------------------------------IGQALAKRAQGFDMD--------------- 171 (320) T ss_dssp CBCCCTTCEEEEECCSH---------------------------------HHHHHHHHHHTTTCE--------------- T ss_pred cCcCCCCCEEEEECcCH---------------------------------HHHHHHHHHHHCCCE--------------- Confidence 12335678999999873 677888888776542 Q ss_pred cccCCccccceeecccc-cccc-cccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCC Q psy13054 282 WRMGSKTDTNHYFGYNW-FERS-NGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 358 (1128) Q Consensus 282 ~~~g~~~~~~~~~g~~~-~~~~-~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG 358 (1128) +++|++ .... ...+.|++++ +++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+||| T Consensus 172 -----------V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg 240 (320) T 1gdh_A 172 -----------IDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240 (320) T ss_dssp -----------EEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCG T ss_pred -----------EEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCC Confidence 334444 2221 1234577777 8999999999999999999999999999999999999999999999 Q ss_pred CccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 359 GLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 359 ~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) ++||+++|.++|++|+|+||+||||++|| +.++|||++||+ ++|||++++|.+ ... +|+.+|+++. T Consensus 241 ~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nv------iltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~ 312 (320) T 1gdh_A 241 DLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNT------FLFPHIGSAATQAREDMAHQA-NDLIDALFGG 312 (320) T ss_dssp GGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTE------EECSSCTTCBHHHHHHHHHHH-HHHHHHHHTT T ss_pred cccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCE------EECCcCCcCcHHHHHHHHHHH-HHHHHHHcCC Confidence 99999999999999999999999999999 889999999999 999999999885 344 7777777653 |
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
---|
Probab=100.00 E-value=2.5e-48 Score=443.30 Aligned_cols=277 Identities=18% Similarity=0.236 Sum_probs=226.7 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCC--ceEEEEcCcccccccHHHHHhCCcEEEecC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGEN--LKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~--LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128) .+++..++.. ..+++.+.++++|+++++..+++++++|+++ |+ ||+|+++|+||||||+++|+++||.|+|+| T Consensus 26 ~~~v~~~~~~----~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p 100 (333) T 1j4a_A 26 DVEVEYTDKL----LTPETVALAKGADGVVVYQQLDYIAETLQAL-ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVP 100 (333) T ss_dssp TSEEEECSSC----CCTTTGGGGTTCSEEEECCSSCBCHHHHHHH-HHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCC T ss_pred CcEEEECCCC----CcHHHHHHhcCCcEEEEcCCCCCCHHHHHhc-cccCCeEEEECCcccccccHHHHHhCCCEEEeCC Confidence 4577766531 2346778899999999977678999999987 56 999999999999999999999999999999 Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128) Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128) |+++++||||++++||+++|++..+++.++++ .| .|.. ..+..+.++++|| T Consensus 101 ~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-~w----------~~~~------------------~~~~~l~g~~vgI 151 (333) T 1j4a_A 101 VYSPNAIAEHAAIQAARILRQDKAMDEKVARH-DL----------RWAP------------------TIGREVRDQVVGV 151 (333) T ss_dssp CSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-BC----------CCTT------------------CCBCCGGGSEEEE T ss_pred CCCchHHHHHHHHHHHHHHcCHHHHHHHHHcC-CC----------ccCC------------------cccccCCCCEEEE Confidence 99999999999999999999999988877653 22 1210 0122355788999 Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128) Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128) ||+|. ||+.++++++++++. + T Consensus 152 iG~G~---------------------------------IG~~~A~~l~~~G~~--------------------------V 172 (333) T 1j4a_A 152 VGTGH---------------------------------IGQVFMQIMEGFGAK--------------------------V 172 (333) T ss_dssp ECCSH---------------------------------HHHHHHHHHHHTTCE--------------------------E T ss_pred EccCH---------------------------------HHHHHHHHHHHCCCE--------------------------E Confidence 99973 677888888776543 2 Q ss_pred ecccccccccccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHc Q psy13054 294 FGYNWFERSNGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372 (1128) Q Consensus 294 ~g~~~~~~~~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128) ++|++.......+. ++++ +++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++ T Consensus 173 ~~~d~~~~~~~~~~-~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~ 251 (333) T 1j4a_A 173 ITYDIFRNPELEKK-GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDS 251 (333) T ss_dssp EEECSSCCHHHHHT-TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH T ss_pred EEECCCcchhHHhh-CeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh Confidence 33443322111122 5566 899999999999999999999999999999999999999999999999999999999999 Q ss_pred CCeeEEEEecCCCCC--CCCCC-----------CcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 373 KKIGGAGLDVMIPEP--LPADH-----------PLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 373 G~IagAaLDVfe~EP--l~~~~-----------pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) |+|+||+||||++|| +|.+| |||++||| ++|||++++|.+ ...++|+.+|+++. T Consensus 252 g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nv------ilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~ 324 (333) T 1j4a_A 252 GKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNV------LVTPKTAFYTTHAVRNMVVKAFDNNLELVEGK 324 (333) T ss_dssp TSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTE------EECSSCTTCBHHHHHHHHHHHHHHHHHHHTTC T ss_pred CCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCE------EECCccccCHHHHHHHHHHHHHHHHHHHHcCC Confidence 999999999999999 45554 69999999 999999999885 34567777777653 |
>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
---|
Probab=100.00 E-value=1.1e-47 Score=444.60 Aligned_cols=284 Identities=21% Similarity=0.291 Sum_probs=232.2 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCC--CCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~--~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128) .+++.+.... ..+.+++.+.++++|++++.. ..++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+| T Consensus 67 g~~v~~~~~~--~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~ 143 (393) T 2nac_A 67 GHTLVVTSDK--DGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVT 143 (393) T ss_dssp TCEEEEESCC--SSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTCEEEECT T ss_pred CCEEEEecCC--CCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhC-CCCcEEEEcCccccccCHHHHhcCCEEEEeCC Confidence 3566653321 224567899999999999853 347999999986 89999999999999999999999999999999 Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128) Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128) ++++++||||++++||++.|++..++++++++ .| ..... ...+..+.||++|| T Consensus 144 g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g-~W------------~~~~~--------------~~~~~~l~gktvGI 196 (393) T 2nac_A 144 YCNSISVAEHVVMMILSLVRNYLPSHEWARKG-GW------------NIADC--------------VSHAYDLEAMHVGT 196 (393) T ss_dssp TTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-CC------------CHHHH--------------HTTCCCCTTCEEEE T ss_pred CcccHHHHHHHHHHHHHHHhccHHHHHHHHcC-CC------------Ccccc--------------ccCCccCCCCEEEE Confidence 99999999999999999999999988877653 23 21000 00112355789999 Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128) Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128) ||+|. ||+.+++++++|++. + T Consensus 197 IGlG~---------------------------------IG~~vA~~l~a~G~~--------------------------V 217 (393) T 2nac_A 197 VAAGR---------------------------------IGLAVLRRLAPFDVH--------------------------L 217 (393) T ss_dssp ECCSH---------------------------------HHHHHHHHHGGGTCE--------------------------E T ss_pred EeECH---------------------------------HHHHHHHHHHhCCCE--------------------------E Confidence 99973 678888888876543 3 Q ss_pred eccccccc--ccccccCCcc-cCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHH Q psy13054 294 FGYNWFER--SNGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL 370 (1128) Q Consensus 294 ~g~~~~~~--~~~~~~g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL 370 (1128) +++++... +...+.|+++ .+++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++||++||++|| T Consensus 218 ~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL 297 (393) T 2nac_A 218 HYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARAL 297 (393) T ss_dssp EEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHH T ss_pred EEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHH Confidence 33443321 1133456666 48999999999999999999999999999999999999999999999999999999999 Q ss_pred HcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHHH Q psy13054 371 KDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELFD 434 (1128) Q Consensus 371 ~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~~ 434 (1128) ++|+|+||+||||++||++.+||||++||| ++|||++++|.+ ....+|+.+|+++... T Consensus 298 ~~g~i~gA~lDV~~~EP~~~~~pL~~~~nv------ilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~ 361 (393) T 2nac_A 298 ESGRLAGYAGDVWFPQPAPKDHPWRTMPYN------GMTPHISGTTLTAQARYAAGTREILECFFEGRPI 361 (393) T ss_dssp HTTSEEEEEESCCSSSSCCTTCGGGTSTTB------CCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCC T ss_pred HcCCeeEEEEEecCCCCCCCCChhHcCCCE------EECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCC Confidence 999999999999999999999999999999 999999999975 3456888888776533 |
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
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Probab=100.00 E-value=1.1e-47 Score=442.31 Aligned_cols=234 Identities=24% Similarity=0.341 Sum_probs=216.0 Q ss_pred cCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCcc Q psy13054 862 TSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWAL 941 (1128) Q Consensus 862 ~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~ 941 (1128) +++++++|+ + |+||||++.++|+||+|+++|+++||.|+|+||+|+.+||||+++++|++.|+ |. T Consensus 47 ~~~~~~~l~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~------------~~- 111 (380) T 2o4c_A 47 TEVSRAALA-G-SPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV------------RG- 111 (380) T ss_dssp SCBCHHHHT-T-SCCCEEEECSSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHH------------HT- T ss_pred CCCCHHHhc-C-CCceEEEEcCcccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhh------------hh- Confidence 478999999 6 99999999999999999999999999999999999999999999999999986 21 Q ss_pred ccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCC Q psy13054 942 KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 942 ~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt 1021 (1128) .+++|+||||||+|+||+.+|++|++|||+|++||++.... ..+....++++++++||+|++|+|++ T Consensus 112 ----------~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~g~~~~~l~ell~~aDvV~l~~Plt 178 (380) T 2o4c_A 112 ----------ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR---EPDGEFVSLERLLAEADVISLHTPLN 178 (380) T ss_dssp ----------CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH---STTSCCCCHHHHHHHCSEEEECCCCC T ss_pred ----------cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh---ccCcccCCHHHHHHhCCEEEEeccCc Confidence 15899999999999999999999999999999998644321 23455679999999999999999999 Q ss_pred cc----cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCC Q psy13054 1022 KD----TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTS 1097 (1128) Q Consensus 1022 ~~----T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHia 1097 (1128) ++ |+++|+++.|++||+|++|||+|||+++|++||+++|++|+|.||+||||++||++ +++|+. +||++|||+| T Consensus 179 ~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~-~~~l~~-~nvi~TPHia 256 (380) T 2o4c_A 179 RDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQA-DPELAA-RCLIATPHIA 256 (380) T ss_dssp SSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHT-TCSEECSSCT T ss_pred cccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCC-chhhcc-CCEEEccccC Confidence 99 99999999999999999999999999999999999999999999999999999965 567887 5999999999 Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCC Q psy13054 1098 SATKAVRDEKSSTSAENIIRGYKGEPMI 1125 (1128) Q Consensus 1098 g~t~e~~~~~~~~~~~nl~~~l~G~~l~ 1125 (1128) |+|.++..++.+++++|+.+|+.|++.. T Consensus 257 g~t~e~~~~~~~~~~~nl~~~l~g~~~~ 284 (380) T 2o4c_A 257 GYSLEGKLRGTAQIYQAYCAWRGIAERV 284 (380) T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCCCCC T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCCcc Confidence 9999999999999999999999998743 |
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
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Probab=100.00 E-value=5.9e-47 Score=428.53 Aligned_cols=286 Identities=22% Similarity=0.347 Sum_probs=236.0 Q ss_pred chhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHH Q psy13054 44 VPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIK 123 (1128) Q Consensus 44 ~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~ 123 (1128) .++.++.++. ..+++...+ ..+.+++.+.++++|+++++...++++++|+++ |+||+|+++|+|+||||+++|+ T Consensus 15 ~~~~~~~l~~-~~~~v~~~~----~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~ 88 (313) T 2ekl_A 15 DEILIKTLRE-KGIQVDYMP----EISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG-KKLKIIARAGIGLDNIDTEEAE 88 (313) T ss_dssp CHHHHHHHHH-TTCEEEECT----TCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-TTCCEEEECSSCCTTBCHHHHH T ss_pred CHHHHHHHHh-CCcEEEeCC----CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEEcCCCCCccCHHHHH Confidence 3444555542 235664321 246788999999999999876678999999986 8999999999999999999999 Q ss_pred hCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccc Q psy13054 124 SRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQ 203 (1128) Q Consensus 124 erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 203 (1128) ++||.|+|+||+++++||||++++||++.|+++.+++.++++ .|.. ..+ T Consensus 89 ~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g-------------~w~~------------------~~~ 137 (313) T 2ekl_A 89 KRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSG-------------IFKK------------------IEG 137 (313) T ss_dssp HTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-------------CCCC------------------CCC T ss_pred hCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcC-------------CCCC------------------CCC Confidence 999999999999999999999999999999999988877653 3320 011 Q ss_pred cccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccc Q psy13054 204 KYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWR 283 (1128) Q Consensus 204 ~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~ 283 (1128) ..+.|+++||||+|. +|+.++++++++++. T Consensus 138 ~~l~g~~vgIIG~G~---------------------------------IG~~~A~~l~~~G~~----------------- 167 (313) T 2ekl_A 138 LELAGKTIGIVGFGR---------------------------------IGTKVGIIANAMGMK----------------- 167 (313) T ss_dssp CCCTTCEEEEESCSH---------------------------------HHHHHHHHHHHTTCE----------------- T ss_pred CCCCCCEEEEEeeCH---------------------------------HHHHHHHHHHHCCCE----------------- Confidence 234578899999873 577888888776543 Q ss_pred cCCccccceeecccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccC Q psy13054 284 MGSKTDTNHYFGYNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLD 362 (1128) Q Consensus 284 ~g~~~~~~~~~g~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVD 362 (1128) +++|++.... ...+.|++++++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++|| T Consensus 168 ---------V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd 238 (313) T 2ekl_A 168 ---------VLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVN 238 (313) T ss_dssp ---------EEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBC T ss_pred ---------EEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccC Confidence 2334433221 123457777899999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHcCCeeEEEEecCCCCCCCCCC---CcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 363 QEALVEFLKDKKIGGAGLDVMIPEPLPADH---PLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 363 e~AL~~AL~sG~IagAaLDVfe~EPl~~~~---pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) ++||.+||++|+|+||+||||++||++ ++ |||++||| ++|||++++|.+ ....+|+.+|+++. T Consensus 239 ~~aL~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nv------iltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~ 310 (313) T 2ekl_A 239 GKALLDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERV------IVTTHIGAQTKEAQKRVAEMTTQNLLNAMKEL 310 (313) T ss_dssp HHHHHHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTE------EECCSCTTCSHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCE------EECCccCcCcHHHHHHHHHHHHHHHHHHHcCC Confidence 999999999999999999999999987 66 99999999 999999999975 45678888888764 |
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
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Probab=100.00 E-value=8.1e-47 Score=426.91 Aligned_cols=288 Identities=29% Similarity=0.430 Sum_probs=233.7 Q ss_pred chhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHH Q psy13054 44 VPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIK 123 (1128) Q Consensus 44 ~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~ 123 (1128) .++.++.++. ..+++..++.. ..+.+++.+.++++|+++++..+++++++|+++ |+||+|+++|+||||||+++|+ T Consensus 10 ~~~~~~~l~~-~g~~v~~~~~~--~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~ 85 (311) T 2cuk_A 10 PGKALDRLRE-RGLEVEVHRGL--FLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSVGVDHVDLEAAR 85 (311) T ss_dssp SSSTTHHHHH-TTCEEEECCSS--CCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHS-TTCCEEECSSSCCTTBCHHHHH T ss_pred CHHHHHHHHh-cCCeEEEecCC--CCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEECCcCccccCHHHHH Confidence 3344455431 22677765432 346788999999999999876678999999986 8999999999999999999999 Q ss_pred hCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccc Q psy13054 124 SRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQ 203 (1128) Q Consensus 124 erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 203 (1128) ++||.|+|+||+++++||||++++||++.|+++.+++.++++ .|..... ....+ T Consensus 86 ~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g-------------~w~~~~~-------------~~~~~ 139 (311) T 2cuk_A 86 ERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDG-------------LWKAWHP-------------ELLLG 139 (311) T ss_dssp TTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-------------CCCCCCT-------------TTTCB T ss_pred hCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcC-------------CCCcccc-------------ccccC Confidence 999999999999999999999999999999999988877653 2321000 00112 Q ss_pred cccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccc Q psy13054 204 KYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWR 283 (1128) Q Consensus 204 ~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~ 283 (1128) ..+.++++||||+|. +|+.++++++++++. T Consensus 140 ~~l~g~~vgIIG~G~---------------------------------IG~~~A~~l~~~G~~----------------- 169 (311) T 2cuk_A 140 LDLQGLTLGLVGMGR---------------------------------IGQAVAKRALAFGMR----------------- 169 (311) T ss_dssp CCCTTCEEEEECCSH---------------------------------HHHHHHHHHHHTTCE----------------- T ss_pred cCCCCCEEEEEEECH---------------------------------HHHHHHHHHHHCCCE----------------- Confidence 235678899999873 577888888766542 Q ss_pred cCCccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCH Q psy13054 284 MGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQ 363 (1128) Q Consensus 284 ~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe 363 (1128) ++++++...... +.+.+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||+ T Consensus 170 ---------V~~~d~~~~~~~----~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~ 236 (311) T 2cuk_A 170 ---------VVYHARTPKPLP----YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236 (311) T ss_dssp ---------EEEECSSCCSSS----SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH T ss_pred ---------EEEECCCCcccc----cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCH Confidence 233443322211 3466999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHH Q psy13054 364 EALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEE 431 (1128) Q Consensus 364 ~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~ 431 (1128) +||++||+ |+|+||+||||++||++.++|||++||+ ++|||++++|.+ ....+|+.+|+++ T Consensus 237 ~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nv------iltPh~~~~t~~~~~~~~~~~~~nl~~~~~g 303 (311) T 2cuk_A 237 EALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNA------VITPHIGSAGRTTRERMAEVAVENLLAVLEG 303 (311) T ss_dssp HHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTE------EECCSCTTCBHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCE------EECCcCCCCCHHHHHHHHHHHHHHHHHHHcC Confidence 99999999 9999999999999999999999999999 999999999875 3456777776654 |
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
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Probab=100.00 E-value=7.9e-46 Score=422.06 Aligned_cols=287 Identities=25% Similarity=0.368 Sum_probs=232.1 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHH-HHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDI-FIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~ee-l~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128) +.++.++.++ +.+++..++.. .+.++ +.+.++++|+++++..+++++++|+++ |+||+|+++|+||||||+++ T Consensus 32 ~~~~~~~~l~--~~~~~~~~~~~---~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~id~~~ 105 (333) T 3ba1_A 32 MSTYLEQELD--KRFKLFRYWTQ---PAQRDFLALQAESIRAVVGNSNAGADAELIDAL-PKLEIVSSFSVGLDKVDLIK 105 (333) T ss_dssp CCHHHHHHHH--HHSEEEEGGGC---SSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHC-TTCCEEEESSSCCTTBCHHH T ss_pred CCHHHHHHHH--hcCCEEEecCC---CChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhC-CCCcEEEEcCccccccCHHH Confidence 4455566654 34677665421 13444 667789999999877778999999986 89999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccc Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEI 201 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 201 (1128) |+++||.|+|+||+++++||||++++||+++|++..+++.++++ .| .... .. T Consensus 106 ~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-~w------------~~~~---------------~~ 157 (333) T 3ba1_A 106 CEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRG-AW------------KFGD---------------FK 157 (333) T ss_dssp HHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-GG------------GGCC---------------CC T ss_pred HHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcC-CC------------Cccc---------------cc Confidence 99999999999999999999999999999999999998877763 34 1000 00 Q ss_pred cccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccc Q psy13054 202 CQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPK 281 (1128) Q Consensus 202 ~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~ 281 (1128) .+..+.++++||||+|. +|+.+++.+.++++. T Consensus 158 ~~~~l~g~~vgIIG~G~---------------------------------iG~~vA~~l~~~G~~--------------- 189 (333) T 3ba1_A 158 LTTKFSGKRVGIIGLGR---------------------------------IGLAVAERAEAFDCP--------------- 189 (333) T ss_dssp CCCCCTTCCEEEECCSH---------------------------------HHHHHHHHHHTTTCC--------------- T ss_pred cccccCCCEEEEECCCH---------------------------------HHHHHHHHHHHCCCE--------------- Confidence 12235568899999873 577888888776543 Q ss_pred cccCCccccceeecccccccccccccCCc-ccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc Q psy13054 282 WRMGSKTDTNHYFGYNWFERSNGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128) Q Consensus 282 ~~~g~~~~~~~~~g~~~~~~~~~~~~g~~-~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128) ++++++..... .++. +.+++|++++||+|++|+|++++|+++||++.|++||+|++|||+|||.+ T Consensus 190 -----------V~~~dr~~~~~---~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~ 255 (333) T 3ba1_A 190 -----------ISYFSRSKKPN---TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255 (333) T ss_dssp -----------EEEECSSCCTT---CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGG T ss_pred -----------EEEECCCchhc---cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCch Confidence 23333322111 1333 45899999999999999999999999999999999999999999999999 Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) +|+++|+++|++|+|+||+||||++||++. +||+.+||| ++|||++++|.+ ...++|+.+|+++. T Consensus 256 vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nv------iltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~ 326 (333) T 3ba1_A 256 VDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENV------VLLPHVGSGTVETRKVMADLVVGNLEAHFSGK 326 (333) T ss_dssp BCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGGGGCTTE------EECSSCTTCSHHHHHHHHHHHHHHHHHHHHTC T ss_pred hCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chhhcCCCE------EECCcCCCCCHHHHHHHHHHHHHHHHHHHcCC Confidence 999999999999999999999999999766 999999999 999999999975 34678888887754 |
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
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Probab=100.00 E-value=3.2e-46 Score=422.00 Aligned_cols=254 Identities=17% Similarity=0.181 Sum_probs=208.6 Q ss_pred cCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccc-c-HHH---HHhCCcEEEecCCCC-chhHHHHHHHHHHHH Q psy13054 78 LKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHL-H-LDE---IKSRGIRVGTVGPVS-SDTVAEYNIGLAIAV 151 (1128) Q Consensus 78 l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnI-D-l~a---a~erGI~V~n~pg~~-~~aVAE~alalmL~l 151 (1128) .+++|+++++. .++++|++ |+||+|+++|+|+||| | +++ +.++||.|+|+|+++ +++||||++++||++ T Consensus 39 ~~~ad~~i~~~---~~~~~l~~--~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~ 113 (315) T 3pp8_A 39 NNPADYALVWQ---PPVEMLAG--RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHW 113 (315) T ss_dssp CSCCSEEEESS---CCHHHHTT--CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHH T ss_pred ccCcEEEEECC---CCHHHhCC--CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHH Confidence 46999999864 58999996 7999999999999999 8 998 788999999999875 899999999999999 Q ss_pred hhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCccccc Q psy13054 152 SRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRM 231 (1128) Q Consensus 152 ~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~i 231 (1128) .|++..+++.+++ +.|... .+..+.||++||||+|. T Consensus 114 ~R~~~~~~~~~~~-------------g~W~~~------------------~~~~l~g~tvGIiG~G~------------- 149 (315) T 3pp8_A 114 FRRFDDYQALKNQ-------------ALWKPL------------------PEYTREEFSVGIMGAGV------------- 149 (315) T ss_dssp HTTHHHHHHHHHT-------------TCCCCC------------------CCCCSTTCCEEEECCSH------------- T ss_pred HhCChHHHHHHHh-------------cccCCC------------------CCCCcCCCEEEEEeeCH------------- Confidence 9999998876654 234311 01235578999999973 Q ss_pred CCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccccccccc--ccccCC Q psy13054 232 GSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSN--GTALGA 309 (1128) Q Consensus 232 g~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~--~~~~g~ 309 (1128) ||+.+++++++|++. +++|++..... .... . T Consensus 150 --------------------IG~~vA~~l~~~G~~--------------------------V~~~dr~~~~~~~~~~~-~ 182 (315) T 3pp8_A 150 --------------------LGAKVAESLQAWGFP--------------------------LRCWSRSRKSWPGVESY-V 182 (315) T ss_dssp --------------------HHHHHHHHHHTTTCC--------------------------EEEEESSCCCCTTCEEE-E T ss_pred --------------------HHHHHHHHHHHCCCE--------------------------EEEEcCCchhhhhhhhh-c Confidence 688889988887653 23333222111 0000 1 Q ss_pred cccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCC Q psy13054 310 QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP 389 (1128) Q Consensus 310 ~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~ 389 (1128) ...+|+|++++||||++|||+|++|+|+||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||+| T Consensus 183 ~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~ 262 (315) T 3pp8_A 183 GREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLP 262 (315) T ss_dssp SHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCC T ss_pred ccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCC Confidence 12589999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCcccCCCCCCCCcccccccCCCCChh----hhHHHHHHHHHHHHH Q psy13054 390 ADHPLVQLDNCGGAGLDVMIPEPLPADHP----LVQLDNCEEFFEELF 433 (1128) Q Consensus 390 ~~~pL~~lpNvg~~~~~v~tph~~~~t~~----~~~~~n~~~~~~~~~ 433 (1128) .+||||++||| ++|||++++|.+ ....+|+.+|+++.. T Consensus 263 ~~~pL~~~~nv------ilTPHia~~t~~~~~~~~~~~ni~~~~~G~~ 304 (315) T 3pp8_A 263 QESPLWRHPRV------AMTPHIAAVTRPAEAIDYISRTITQLEKGEP 304 (315) T ss_dssp TTCGGGGCTTE------EECSSCSSCCCHHHHHHHHHHHHHHHHHTCC T ss_pred CCChhhcCCCE------EECCCCCcccHHHHHHHHHHHHHHHHHcCCC Confidence 99999999999 999999999874 345678888777653 |
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
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Probab=100.00 E-value=4.2e-46 Score=428.11 Aligned_cols=262 Identities=20% Similarity=0.237 Sum_probs=215.3 Q ss_pred CCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCC Q psy13054 55 SRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGP 134 (1128) Q Consensus 55 ~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg 134 (1128) ...++.+++. ...+. +.++++|++++++.+++++++|+ . ++||+|+++|+|+||||+++|+++||.|+|+|| T Consensus 21 ~~~~v~~~~~--~~~~~----~~l~~ad~li~~~~~~v~~~ll~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg 92 (381) T 3oet_A 21 RLGEVKAVPG--RPIPV----EELNHADALMVRSVTKVNESLLS-G-TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPG 92 (381) T ss_dssp TSSEEEEECC-----CH----HHHTTCSEEEECTTSCBSHHHHT-T-SCCCEEEESSSCCTTBCHHHHHHTTCEEECCTT T ss_pred hCCcEEEeCC--CCCCH----HHHCCCEEEEECCCCCCCHHHHc-C-CCCEEEEEccccccccCHHHHHhCCEEEEECCC Confidence 3457777653 12333 34789999999887889999999 3 579999999999999999999999999999999 Q ss_pred CCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeee Q psy13054 135 VSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLI 214 (1128) Q Consensus 135 ~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gii 214 (1128) +|+++||||++++||+++|+.. ..+.||++||| T Consensus 93 ~~~~~VAE~~l~~lL~l~r~~g-----------------------------------------------~~l~gktvGII 125 (381) T 3oet_A 93 CNAIAVVEYVFSALLMLAERDG-----------------------------------------------FSLRDRTIGIV 125 (381) T ss_dssp TTHHHHHHHHHHHHHHHHHHTT-----------------------------------------------CCGGGCEEEEE T ss_pred cCcchhHHHHHHHHHHHHHhcC-----------------------------------------------CccCCCEEEEE Confidence 9999999999999999998531 01346889999 Q ss_pred eccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceee Q psy13054 215 SLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYF 294 (1128) Q Consensus 215 Glg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~ 294 (1128) |+|. ||+.++++++++++. ++ T Consensus 126 GlG~---------------------------------IG~~vA~~l~a~G~~--------------------------V~ 146 (381) T 3oet_A 126 GVGN---------------------------------VGSRLQTRLEALGIR--------------------------TL 146 (381) T ss_dssp CCSH---------------------------------HHHHHHHHHHHTTCE--------------------------EE T ss_pred eECH---------------------------------HHHHHHHHHHHCCCE--------------------------EE Confidence 9973 688889988877543 34 Q ss_pred cccccccccccccCCcccCHHHHhhcCCEEEEecCCCcc----cccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHH Q psy13054 295 GYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFL 370 (1128) Q Consensus 295 g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~----T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL 370 (1128) +|++..... ..+..+.+++|++++||||++|||+|++ |+||||++.|++||||++|||+|||++|||+||++|| T Consensus 147 ~~d~~~~~~--~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL 224 (381) T 3oet_A 147 LCDPPRAAR--GDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARL 224 (381) T ss_dssp EECHHHHHT--TCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHH T ss_pred EECCChHHh--ccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHH Confidence 455422111 1345678999999999999999999999 9999999999999999999999999999999999999 Q ss_pred HcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHHHhhhccC Q psy13054 371 KDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELFDKNFQSI 440 (1128) Q Consensus 371 ~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~~~~~~~~ 440 (1128) ++|+|+||+||||++||++ +++|+.++ + ++|||++++|.+ .+.++|+.+|+.+.....+..+ T Consensus 225 ~~g~i~gA~LDV~e~EP~~-~~~L~~~~-~------i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 292 (381) T 3oet_A 225 NAGQPLSVVLDVWEGEPDL-NVALLEAV-D------IGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQRVALETL 292 (381) T ss_dssp HTTCCEEEEESCCTTTTSC-CHHHHHHS-S------EECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCCCCCHHHH T ss_pred HhCCCeEEEeeccccCCCC-cchhhhCC-E------EECCccCcCcHHHHHHHHHHHHHHHHHHHcCCcccccccc Confidence 9999999999999999976 45688775 6 799999999985 4567888888876555454433 |
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
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Probab=100.00 E-value=2.1e-45 Score=420.53 Aligned_cols=286 Identities=21% Similarity=0.267 Sum_probs=229.5 Q ss_pred CCceEEEcCCCCCCCCHHHHHHhc-CCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecC Q psy13054 55 SRFDIDTYPVSEGRMPRDIFIEKL-KGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128) Q Consensus 55 ~~~~v~~~~~~~~~~~~eel~~~l-~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128) ..+++..++. .+.+|+.+.+ +++|+++++...++++++|+++ |+||+|+++|+||||||+++|+++||.|+|+| T Consensus 41 ~~~~~~~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~~ 115 (347) T 1mx3_A 41 DVATVAFCDA----QSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP 115 (347) T ss_dssp TTCEEEECCC----SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCCTTBCHHHHHHTTCEEECCC T ss_pred ccceEEecCC----CCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhC-CCCCEEEEcccccCcccHHHHHhCCceEEECC Confidence 4467776653 3456676664 7889988877778999999986 89999999999999999999999999999999 Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeee Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLL 213 (1128) Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~gi 213 (1128) ++++++||||++++||++.|++..+++.++++ .|+ ....... .+. ..+..+.++++|| T Consensus 116 ~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g-~w~------------~~~~~~~-----~~~----~~~~~l~g~tvGI 173 (347) T 1mx3_A 116 AASVEETADSTLCHILNLYRRATWLHQALREG-TRV------------QSVEQIR-----EVA----SGAARIRGETLGI 173 (347) T ss_dssp STTHHHHHHHHHHHHHHHHHCHHHHHHHHHTT-CCC------------CSHHHHH-----HHT----TTCCCCTTCEEEE T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcC-Ccc------------ccccccc-----ccc----cCccCCCCCEEEE Confidence 99999999999999999999999988877653 231 0000000 000 0012345788999 Q ss_pred eeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCcccccee Q psy13054 214 ISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHY 293 (1128) Q Consensus 214 iGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~ 293 (1128) ||+|. +|+.++++++++++. + T Consensus 174 IG~G~---------------------------------IG~~vA~~l~~~G~~--------------------------V 194 (347) T 1mx3_A 174 IGLGR---------------------------------VGQAVALRAKAFGFN--------------------------V 194 (347) T ss_dssp ECCSH---------------------------------HHHHHHHHHHTTTCE--------------------------E T ss_pred EeECH---------------------------------HHHHHHHHHHHCCCE--------------------------E Confidence 99873 678888888777553 2 Q ss_pred ecccccccc-cccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHH Q psy13054 294 FGYNWFERS-NGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLK 371 (1128) Q Consensus 294 ~g~~~~~~~-~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~ 371 (1128) ++|++.... .+...|++++ +++|++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||++||+ T Consensus 195 ~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~ 274 (347) T 1mx3_A 195 LFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK 274 (347) T ss_dssp EEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH T ss_pred EEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHH Confidence 333432221 1234566665 89999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCeeEEEEecCCCCCCC-CCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 372 DKKIGGAGLDVMIPEPLP-ADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 372 sG~IagAaLDVfe~EPl~-~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) +|+|+||+||||+.||++ .++||+.+||+ ++|||+++++.+ ...++|+.+|+++. T Consensus 275 ~g~i~gA~lDV~~~EP~~~~~~~L~~~~nv------i~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~ 336 (347) T 1mx3_A 275 EGRIRGAALDVHESEPFSFSQGPLKDAPNL------ICTPHAAWYSEQASIEMREEAAREIRRAITGR 336 (347) T ss_dssp HTSEEEEEESCCSSSSCCTTSSTTTTCSSE------EECSSCTTCCHHHHHHHHHHHHHHHHHHHHSC T ss_pred hCCCcEEEEeecccCCCCCCCchHHhCCCE------EEEchHHHHHHHHHHHHHHHHHHHHHHHHcCC Confidence 999999999999999987 47999999999 999999999885 34567888877653 |
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
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Probab=100.00 E-value=9.8e-45 Score=413.72 Aligned_cols=288 Identities=24% Similarity=0.386 Sum_probs=235.1 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128) +.++.++.++ ..+++..++ ..+.+++.+.++++|+++++..+++++++|+++ |+||+|+++|+|+||||+++| T Consensus 11 ~~~~~~~~l~--~~~~~~~~~----~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~ 83 (333) T 2d0i_A 11 MKREALEELK--KYADVEIIL----YPSGEELKGVIGRFDGIIVSPTTKITREVLENA-ERLKVISCHSAGYDNIDLEEA 83 (333) T ss_dssp CCHHHHHHHH--TTSEEEECC----SCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTC-TTCCEEEESSSCCTTBCHHHH T ss_pred CCHHHHHHHH--hcCCEEEeC----CCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhC-CCceEEEECCcccccccHHHH Confidence 4555566665 446777654 146788999999999999877778999999986 899999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128) +++||.|+|+||+++++||||++++||+++|++..+++.++++ .| ..... ... T Consensus 84 ~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g-~w------------~~~~~--------------~~~ 136 (333) T 2d0i_A 84 TKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRG-EW------------ESHAK--------------IWT 136 (333) T ss_dssp HHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTT-CC------------CCHHH--------------HHT T ss_pred HhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcC-CC------------CcCcc--------------ccc Confidence 9999999999999999999999999999999999988877653 23 11000 000 Q ss_pred c----cccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCC Q psy13054 203 Q----KYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQ 278 (1128) Q Consensus 203 ~----~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~ 278 (1128) + ..+.++++||||+|. +|+.+++.+.++++. T Consensus 137 ~~~~~~~l~g~~vgIIG~G~---------------------------------iG~~vA~~l~~~G~~------------ 171 (333) T 2d0i_A 137 GFKRIESLYGKKVGILGMGA---------------------------------IGKAIARRLIPFGVK------------ 171 (333) T ss_dssp TSCCCCCSTTCEEEEECCSH---------------------------------HHHHHHHHHGGGTCE------------ T ss_pred CCcccCCCCcCEEEEEccCH---------------------------------HHHHHHHHHHHCCCE------------ Confidence 1 235578899999873 577788877766442 Q ss_pred ccccccCCccccceeecccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecC Q psy13054 279 NPKWRMGSKTDTNHYFGYNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSR 357 (1128) Q Consensus 279 va~~~~g~~~~~~~~~g~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaR 357 (1128) ++++++.... ...+.|++++++++++++||+|++|+|++++|+++|+++.|+.||+| +|||+|| T Consensus 172 --------------V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~sr 236 (333) T 2d0i_A 172 --------------LYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGR 236 (333) T ss_dssp --------------EEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSC T ss_pred --------------EEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCC Confidence 2334433221 12234666779999999999999999999999999999999999999 9999999 Q ss_pred CCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCC-CCCCCCcccccccCCCCChh------hhHHHHHHHHHH Q psy13054 358 GGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD-NCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFE 430 (1128) Q Consensus 358 G~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lp-Nvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~ 430 (1128) |.++|+++|+++|++|+|+|||+|||++||++ ++||+.+| || ++|||+++.|.+ ...++|+.+|++ T Consensus 237 g~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nv------iltPh~~~~t~~~~~~~~~~~~~n~~~~~~ 309 (333) T 2d0i_A 237 GALVDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWET------VLTPHYAGLALEAQEDVGFRAVENLLKVLR 309 (333) T ss_dssp GGGBCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTE------EECCSCTTCCHHHHHHHHHHHHHHHHHHHT T ss_pred CcccCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCE------EEcCccCCCcHHHHHHHHHHHHHHHHHHHc Confidence 99999999999999999999999999999988 99999999 99 999999999885 345677777665 Q ss_pred H Q psy13054 431 E 431 (1128) Q Consensus 431 ~ 431 (1128) + T Consensus 310 g 310 (333) T 2d0i_A 310 G 310 (333) T ss_dssp T T ss_pred C Confidence 4 |
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
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Probab=100.00 E-value=3.1e-44 Score=409.35 Aligned_cols=298 Identities=35% Similarity=0.528 Sum_probs=239.4 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128) +.++.++.++....+++..++. ....+.+++.+.++++|+++++...++++++|++++|+||+|+++|+||||||+++| T Consensus 17 ~~~~~~~~l~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~ 95 (330) T 2gcg_A 17 IPAEGRVALARAADCEVEQWDS-DEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEI 95 (330) T ss_dssp CCHHHHHHHHHCTTEEEEECCS-SSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESSSCCTTBCHHHH T ss_pred CCHHHHHHHHhcCCceEEEecC-CCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECCcccccccHHHH Confidence 3445555554211367776652 223567899999999999998766789999999865799999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128) +++||.|+|+||+++++||||++++||++.|++..+++.++++ .|. .|... ... T Consensus 96 ~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~-~w~---------~~~~~----------------~~~ 149 (330) T 2gcg_A 96 KKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNG-GWT---------SWKPL----------------WLC 149 (330) T ss_dssp HHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-CCC---------SCCTT----------------SSC T ss_pred HhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcC-CCc---------ccCcc----------------ccc Confidence 9999999999999999999999999999999999988877653 221 11100 011 Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128) Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128) +..+.++++||||+|. +|+.+++.+.++++. T Consensus 150 ~~~l~g~~vgIIG~G~---------------------------------iG~~iA~~l~~~G~~---------------- 180 (330) T 2gcg_A 150 GYGLTQSTVGIIGLGR---------------------------------IGQAIARRLKPFGVQ---------------- 180 (330) T ss_dssp BCCCTTCEEEEECCSH---------------------------------HHHHHHHHHGGGTCC---------------- T ss_pred CcCCCCCEEEEECcCH---------------------------------HHHHHHHHHHHCCCE---------------- Confidence 2335578899999873 577777777665432 Q ss_pred ccCCccccceeeccccccc--ccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc Q psy13054 283 RMGSKTDTNHYFGYNWFER--SNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL 360 (1128) Q Consensus 283 ~~g~~~~~~~~~g~~~~~~--~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l 360 (1128) ++++++... +...+.+++++++++++++||+|++|+|++++|+++|+++.++.||+|++|||+|||++ T Consensus 181 ----------V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~ 250 (330) T 2gcg_A 181 ----------RFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDV 250 (330) T ss_dssp ----------EEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGG T ss_pred ----------EEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcc Confidence 233443221 11234566777999999999999999999999999999999999999999999999999 Q ss_pred cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 361 LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 361 VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) +|+++|.++|++|+|+||+||||++||++.++||+++||| ++|||+++.+.+ ...++|+.+|+++. T Consensus 251 v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nv------i~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~ 322 (330) T 2gcg_A 251 VNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC------VILPHIGSATHRTRNTMSLLAANNLLAGLRGE 322 (330) T ss_dssp BCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTE------EECCSCTTCBHHHHHHHHHHHHHHHHHHHHTC T ss_pred cCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCE------EECCCCCCCcHHHHHHHHHHHHHHHHHHHcCC Confidence 9999999999999999999999999999999999999999 999999999864 35578888887764 |
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
---|
Probab=100.00 E-value=1.2e-44 Score=413.48 Aligned_cols=298 Identities=29% Similarity=0.452 Sum_probs=238.3 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128) +.++.++.++ ..+++..++. ....+.+++.+.++++|+++++..+++++++|+++ |+||+|+++|+||||||+++| T Consensus 11 ~~~~~~~~l~--~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~ 86 (334) T 2dbq_A 11 IPEVGIKMLE--DEFEVEVWGD-EKEIPREILLKKVKEVDALVTMLSERIDKEVFENA-PKLRIVANYAVGYDNIDIEEA 86 (334) T ss_dssp CCHHHHHHHH--TTSEEEECCC-SSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHH T ss_pred CCHHHHHHHH--hcCCEEEecC-CCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhC-CCceEEEECCcccccccHHHH Confidence 4445556554 4577777653 22346788999999999999977678999999986 899999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128) +++||.|+|+||+++++||||++++||++.|++..+++.++++ .|... ...|... ... T Consensus 87 ~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~-~w~~~-----~~~~~~~----------------~~~ 144 (334) T 2dbq_A 87 TKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSG-EWKKR-----GVAWHPK----------------WFL 144 (334) T ss_dssp HHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTS-HHHHT-----TCCCCTT----------------TTC T ss_pred HhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcC-CCccc-----ccccccc----------------ccc Confidence 9999999999999999999999999999999999998877764 45210 0011000 011 Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128) Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128) +..+.++++||||+|. +|+.+++.+.++++. T Consensus 145 ~~~l~g~~vgIIG~G~---------------------------------iG~~iA~~l~~~G~~---------------- 175 (334) T 2dbq_A 145 GYDVYGKTIGIIGLGR---------------------------------IGQAIAKRAKGFNMR---------------- 175 (334) T ss_dssp CCCCTTCEEEEECCSH---------------------------------HHHHHHHHHHHTTCE---------------- T ss_pred ccCCCCCEEEEEccCH---------------------------------HHHHHHHHHHhCCCE---------------- Confidence 2235568899998873 577777777665443 Q ss_pred ccCCccccceeecccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCcc Q psy13054 283 RMGSKTDTNHYFGYNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 361 (1128) Q Consensus 283 ~~g~~~~~~~~~g~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lV 361 (1128) ++++++.... ...+.|+++.++++++++||+|++|+|++++|+++|+++.++.||+|++|||+|||.++ T Consensus 176 ----------V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v 245 (334) T 2dbq_A 176 ----------ILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVV 245 (334) T ss_dssp ----------EEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGB T ss_pred ----------EEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCccc Confidence 2333332221 12234666779999999999999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHH Q psy13054 362 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 362 De~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~ 432 (1128) |+++|.++|++|+|+||++|||++|| +.++||+.+||| ++|||+++.|.+ ....+|+.+|+++. T Consensus 246 ~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~v------i~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~ 315 (334) T 2dbq_A 246 DTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNV------VLTPHIGSASFGAREGMAELVAKNLIAFKRGE 315 (334) T ss_dssp CHHHHHHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTE------EECSSCTTCSHHHHHHHHHHHHHHHHHHHTTC T ss_pred CHHHHHHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCE------EECCccCCCcHHHHHHHHHHHHHHHHHHHcCC Confidence 99999999999999999999999999 889999999999 999999999875 34567777776653 |
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
---|
Probab=100.00 E-value=2e-44 Score=413.59 Aligned_cols=291 Identities=22% Similarity=0.305 Sum_probs=234.0 Q ss_pred hhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcC-----CceEEEeC------CCCCCCHHHHhccCCCceEEEEcCccc Q psy13054 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLK-----GCSALLCN------PHQKVDKEVLDRSGENLKVIATFSVGH 114 (1128) Q Consensus 46 ~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~-----~adaIi~~------~~~~i~~evL~~~~~~LK~I~~~gvG~ 114 (1128) +.++.|+ ..+++..++. .+.+++++.++ ++|+|++. ...++++++|++++++||+|+++|+|| T Consensus 18 ~~~~~l~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~ 91 (348) T 2w2k_A 18 DLWSDFQ--QKFEVIPANL----TTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGF 91 (348) T ss_dssp HHHHHHH--HHSEEEECCC----CCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTCCEEEESSSCC T ss_pred HHHHHHH--hcceEEecCC----CCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCceEEEECCccc Confidence 3445543 3467777652 36889999887 89998864 235899999998743799999999999 Q ss_pred ccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhh--hHHHHhhccCCCCcccccccccceE Q psy13054 115 DHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSS--FAEIQTRALDTKFPAKQQNLHNVKV 192 (1128) Q Consensus 115 DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v 192 (1128) ||||+++|+++||.|+|+||+++++||||++++||+++|++..+++.++++.. |....... T Consensus 92 d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~----------------- 154 (348) T 2w2k_A 92 DWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEI----------------- 154 (348) T ss_dssp TTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHH----------------- T ss_pred cccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccc----------------- Confidence 99999999999999999999999999999999999999999999887766421 42100000 Q ss_pred eecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhcc-CCceeeeeeC Q psy13054 193 RLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLK-GSDIFEFFLG 271 (1128) Q Consensus 193 ~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~-g~~~~~~ilG 271 (1128) ...+..+.|+++||||+|. +|+.+++.+. ++++. T Consensus 155 -------~~~~~~l~g~~vgIIG~G~---------------------------------IG~~vA~~l~~~~G~~----- 189 (348) T 2w2k_A 155 -------GKSAHNPRGHVLGAVGLGA---------------------------------IQKEIARKAVHGLGMK----- 189 (348) T ss_dssp -------HTTCCCSTTCEEEEECCSH---------------------------------HHHHHHHHHHHTTCCE----- T ss_pred -------cccCcCCCCCEEEEEEECH---------------------------------HHHHHHHHHHHhcCCE----- Confidence 0011234568899999873 6778888887 76543 Q ss_pred CCCCCCCccccccCCccccceeecccccccc--cccccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCC Q psy13054 272 PKKNGSQNPKWRMGSKTDTNHYFGYNWFERS--NGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKP 348 (1128) Q Consensus 272 ~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~--~~~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~ 348 (1128) ++++++.... ...+.|++++ ++++++++||+|++|||++++|+++|+++.|++||+ T Consensus 190 ---------------------V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~ 248 (348) T 2w2k_A 190 ---------------------LVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248 (348) T ss_dssp ---------------------EEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCT T ss_pred ---------------------EEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCC Confidence 2333332211 1233467777 899999999999999999999999999999999999 Q ss_pred CcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChh------hhHH Q psy13054 349 TAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHP------LVQL 422 (1128) Q Consensus 349 gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~ 422 (1128) |++|||+|||+++|+++|.++|++|+|+||++|||++|| +.++||+.+||| ++|||++++|.+ .... T Consensus 249 gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nv------iltPH~~~~t~e~~~~~~~~~~ 321 (348) T 2w2k_A 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHV------TLTTHIGGVAIETFHEFERLTM 321 (348) T ss_dssp TEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSE------EECCSCTTCSHHHHHHHHHHHH T ss_pred CCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCE------EEcCcCCCCCHHHHHHHHHHHH Confidence 999999999999999999999999999999999999999 678899999999 999999999985 3457 Q ss_pred HHHHHHHHHH Q psy13054 423 DNCEEFFEEL 432 (1128) Q Consensus 423 ~n~~~~~~~~ 432 (1128) +|+.+|+++. T Consensus 322 ~ni~~~~~g~ 331 (348) T 2w2k_A 322 TNIDRFLLQG 331 (348) T ss_dssp HHHHHHHHTC T ss_pred HHHHHHHcCC Confidence 8888888764 |
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
---|
Probab=100.00 E-value=3.7e-43 Score=423.71 Aligned_cols=288 Identities=25% Similarity=0.382 Sum_probs=238.3 Q ss_pred cchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHH Q psy13054 43 LVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 43 l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa 122 (1128) +.++.++.++ +.+++..++. .+.+++.+.++++|++++++.+++++++|+++ |+||+|+++|+|+||||+++| T Consensus 13 ~~~~~~~~l~--~~~~v~~~~~----~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~ 85 (529) T 1ygy_A 13 LAPSTVAALG--DQVEVRWVDG----PDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNVDVDAA 85 (529) T ss_dssp CCGGGGTTSC--SSSEEEECCT----TSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHH T ss_pred CCHHHHHHHh--cCceEEEcCC----CCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCcEEEECCcCcCccCHhHH Confidence 3344455553 3478877652 46789999999999999987789999999986 899999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCcccccc Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEIC 202 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 202 (1128) +++||.|+|+|++|+.+||||++++||+++|+++.+++.++++ .|... .+. T Consensus 86 ~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g-------------~w~~~----------------~~~ 136 (529) T 1ygy_A 86 TARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH-------------TWKRS----------------SFS 136 (529) T ss_dssp HHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-------------CCCGG----------------GCC T ss_pred HhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhC-------------CCccc----------------CcC Confidence 9999999999999999999999999999999999998877653 34211 011 Q ss_pred ccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCcccc Q psy13054 203 QKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKW 282 (1128) Q Consensus 203 ~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~ 282 (1128) +..+.++++||||+|. +|+.++++++++++. T Consensus 137 ~~~l~g~~vgIIG~G~---------------------------------IG~~vA~~l~~~G~~---------------- 167 (529) T 1ygy_A 137 GTEIFGKTVGVVGLGR---------------------------------IGQLVAQRIAAFGAY---------------- 167 (529) T ss_dssp BCCCTTCEEEEECCSH---------------------------------HHHHHHHHHHTTTCE---------------- T ss_pred ccccCCCEEEEEeeCH---------------------------------HHHHHHHHHHhCCCE---------------- Confidence 2345678999999973 677888888776542 Q ss_pred ccCCccccceeeccccccc-ccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCcc Q psy13054 283 RMGSKTDTNHYFGYNWFER-SNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLL 361 (1128) Q Consensus 283 ~~g~~~~~~~~~g~~~~~~-~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lV 361 (1128) +++|+++.. +...+.|++.++++|++++||+|++|+|++++|+++|+++.|++||+|+++||+|||+++ T Consensus 168 ----------V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv 237 (529) T 1ygy_A 168 ----------VVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 237 (529) T ss_dssp ----------EEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSB T ss_pred ----------EEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchh Confidence 344444321 123456777789999999999999999999999999999999999999999999999999 Q ss_pred CHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCCChhhh------HHHHHHHHHHHH Q psy13054 362 DQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPADHPLV------QLDNCEEFFEEL 432 (1128) Q Consensus 362 De~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~~------~~~n~~~~~~~~ 432 (1128) |+++|.++|++|+|+||++|||+.||+ .++|||++||+ ++|||.++++.+.. .++|+..|+.+. T Consensus 238 ~~~aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~v------ilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~ 307 (529) T 1ygy_A 238 DEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQV------VVTPHLGASTAEAQDRAGTDVAESVRLALAGE 307 (529) T ss_dssp CHHHHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTE------EECSSCSSCBHHHHHHHHHHHHHHHHHHHTTC T ss_pred hHHHHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCE------EEccccCCCCHHHHHHHHHHHHHHHHHHHcCC Confidence 999999999999999999999999995 68999999999 99999998877543 366777766654 |
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
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Probab=100.00 E-value=1.7e-43 Score=398.26 Aligned_cols=254 Identities=20% Similarity=0.246 Sum_probs=209.2 Q ss_pred HhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhch Q psy13054 76 EKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155 (1128) Q Consensus 76 ~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i 155 (1128) +.++++|+++++. .+.++|+++ |+||+|+++|+|+||||++++ ++||.|+|+||+++.+||||++++||++.|++ T Consensus 27 ~~~~~~d~~i~~~---~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~ 101 (303) T 1qp8_A 27 GDLGNVEAALVSR---ITAEELAKM-PRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRI 101 (303) T ss_dssp SCCTTBCCCCBSC---CCHHHHHHC-TTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTH T ss_pred hhhCCCEEEEECC---CCHHHHhhC-CCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCH Confidence 4578999998764 467999986 899999999999999999985 79999999999999999999999999999999 Q ss_pred HHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCcc Q psy13054 156 QQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKT 235 (1128) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t 235 (1128) ..+++.++++ .|.... .+..+.++++||||+|. T Consensus 102 ~~~~~~~~~g-------------~w~~~~-----------------~~~~l~g~~vgIIG~G~----------------- 134 (303) T 1qp8_A 102 IQYGEKMKRG-------------DYGRDV-----------------EIPLIQGEKVAVLGLGE----------------- 134 (303) T ss_dssp HHHHHHHHTT-------------CCCCCS-----------------CCCCCTTCEEEEESCST----------------- T ss_pred HHHHHHHHcC-------------CCCCCC-----------------CCCCCCCCEEEEEccCH----------------- Confidence 9988876653 342100 01124568899999873 Q ss_pred ccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHH Q psy13054 236 DTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLD 315 (1128) Q Consensus 236 ~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLd 315 (1128) +|+.++++++++++. +++|++... .. ....+.+++ T Consensus 135 ----------------IG~~~A~~l~~~G~~--------------------------V~~~dr~~~-~~--~~~~~~~l~ 169 (303) T 1qp8_A 135 ----------------IGTRVGKILAALGAQ--------------------------VRGFSRTPK-EG--PWRFTNSLE 169 (303) T ss_dssp ----------------HHHHHHHHHHHTTCE--------------------------EEEECSSCC-CS--SSCCBSCSH T ss_pred ----------------HHHHHHHHHHHCCCE--------------------------EEEECCCcc-cc--CcccCCCHH Confidence 678888888776543 233443222 11 122345899 Q ss_pred HHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecC-CCCCCCCCCCc Q psy13054 316 TLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVM-IPEPLPADHPL 394 (1128) Q Consensus 316 eLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVf-e~EPl~~~~pL 394 (1128) +++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||||||| ++||++.++|| T Consensus 170 ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L 249 (303) T 1qp8_A 170 EALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEF 249 (303) T ss_dssp HHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHH T ss_pred HHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChh Confidence 99999999999999999999999999999999999999999999999999999999999999999999 88999999999 Q ss_pred ccCCCCCCCCcccccccCCCC--Chh------hhHHHHHHHHHHHH Q psy13054 395 VQLDNCGGAGLDVMIPEPLPA--DHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 395 ~~lpNvg~~~~~v~tph~~~~--t~~------~~~~~n~~~~~~~~ 432 (1128) |++||+ ++|||++++ |.+ ....+|+.+|+++. T Consensus 250 ~~~~nv------iltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~ 289 (303) T 1qp8_A 250 FSLPNV------VATPWVAGGYGNERVWRQMVMEAVRNLITYATGG 289 (303) T ss_dssp HTSTTE------EECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTS T ss_pred hcCCCE------EECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCC Confidence 999999 999999998 543 34457777766653 |
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
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Probab=100.00 E-value=5.3e-43 Score=403.48 Aligned_cols=249 Identities=21% Similarity=0.296 Sum_probs=210.9 Q ss_pred HhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhch Q psy13054 76 EKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155 (1128) Q Consensus 76 ~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i 155 (1128) +.++++|++++++.+++++++|+ + |+||+|+++|+|+||||+++|+++||.|+|+||+++.+||||++++||++.|+. T Consensus 33 ~~l~~ad~li~~~~~~~~~~~l~-~-~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~ 110 (380) T 2o4c_A 33 AALAEVDVLLVRSVTEVSRAALA-G-SPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR 110 (380) T ss_dssp TTTTTCSEEEECTTSCBCHHHHT-T-SCCCEEEECSSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH T ss_pred HHHCCcEEEEEcCCCCCCHHHhc-C-CCceEEEEcCcccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh Confidence 34689999999877789999999 5 899999999999999999999999999999999999999999999999999863 Q ss_pred HHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCcc Q psy13054 156 QQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKT 235 (1128) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t 235 (1128) . ..+.++++||||+|+ T Consensus 111 ~-----------------------------------------------~~l~g~tvGIIGlG~----------------- 126 (380) T 2o4c_A 111 G-----------------------------------------------ADLAERTYGVVGAGQ----------------- 126 (380) T ss_dssp T-----------------------------------------------CCGGGCEEEEECCSH----------------- T ss_pred h-----------------------------------------------cccCCCEEEEEeCCH----------------- Confidence 1 012357899999873 Q ss_pred ccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHH Q psy13054 236 DTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLD 315 (1128) Q Consensus 236 ~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLd 315 (1128) ||+.++++++++++. ++++++..... ..+..+.+++ T Consensus 127 ----------------IG~~vA~~l~~~G~~--------------------------V~~~d~~~~~~--~~g~~~~~l~ 162 (380) T 2o4c_A 127 ----------------VGGRLVEVLRGLGWK--------------------------VLVCDPPRQAR--EPDGEFVSLE 162 (380) T ss_dssp ----------------HHHHHHHHHHHTTCE--------------------------EEEECHHHHHH--STTSCCCCHH T ss_pred ----------------HHHHHHHHHHHCCCE--------------------------EEEEcCChhhh--ccCcccCCHH Confidence 678888888776543 33444322111 2345678999 Q ss_pred HHhhcCCEEEEecCCCcc----cccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCC Q psy13054 316 TLCAESDFIFVTCALTKD----TEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 391 (1128) Q Consensus 316 eLl~~SDiVslh~PLT~~----T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~ 391 (1128) |++++||+|++|+|+|++ |+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ + T Consensus 163 ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~-~ 241 (380) T 2o4c_A 163 RLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQA-D 241 (380) T ss_dssp HHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSC-C T ss_pred HHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCC-c Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999954 5 Q ss_pred CCcccCCCCCCCCcccccccCCCCChh------hhHHHHHHHHHHHHHHhhhccCCC Q psy13054 392 HPLVQLDNCGGAGLDVMIPEPLPADHP------LVQLDNCEEFFEELFDKNFQSIDP 442 (1128) Q Consensus 392 ~pL~~lpNvg~~~~~v~tph~~~~t~~------~~~~~n~~~~~~~~~~~~~~~~~~ 442 (1128) ++|+. +|+ ++|||++++|.+ .+..+|+.+|+.+....++..+.| T Consensus 242 ~~l~~-~nv------i~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~~~~~~~~p 291 (380) T 2o4c_A 242 PELAA-RCL------IATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERVSLQDVLP 291 (380) T ss_dssp HHHHT-TCS------EECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCCCCGGGTCC T ss_pred hhhcc-CCE------EEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCccchhhcCC Confidence 67777 498 999999999985 456789999888776666665444 |
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
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Probab=100.00 E-value=5.6e-43 Score=390.88 Aligned_cols=246 Identities=18% Similarity=0.250 Sum_probs=199.8 Q ss_pred HhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhch Q psy13054 76 EKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155 (1128) Q Consensus 76 ~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i 155 (1128) +.++++|++++. ..++ + .|+||+|+++|+||||||+++|++++|.++| ++.++++||||++++||++.|++ T Consensus 30 ~~~~~ad~li~~-~~~~------~-~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~ 100 (290) T 3gvx_A 30 PDYYDAEAQVIK-DRYV------L-GKRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNI 100 (290) T ss_dssp TSCCCCSEEEES-SCCC------C-CSSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTH T ss_pred cchhhhhhhhhh-hhhh------h-hhhhHHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhh Confidence 567899999984 3333 4 4899999999999999999999987665555 58889999999999999999999 Q ss_pred HHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCcc Q psy13054 156 QQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKT 235 (1128) Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t 235 (1128) ..+++.++++ .|.... ...+.||++||||+|. T Consensus 101 ~~~~~~~~~g-------------~w~~~~------------------~~~l~g~tvGIIGlG~----------------- 132 (290) T 3gvx_A 101 LENNELMKAG-------------IFRQSP------------------TTLLYGKALGILGYGG----------------- 132 (290) T ss_dssp HHHHHHHHTT-------------CCCCCC------------------CCCCTTCEEEEECCSH----------------- T ss_pred hhhhhHhhhc-------------ccccCC------------------ceeeecchheeeccCc----------------- Confidence 9988876552 332110 0224578999999973 Q ss_pred ccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCccc-CH Q psy13054 236 DTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLV-PL 314 (1128) Q Consensus 236 ~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~v-sL 314 (1128) ||+.++++++++++. +++|++...... .++++ ++ T Consensus 133 ----------------IG~~vA~~l~~~G~~--------------------------V~~~dr~~~~~~---~~~~~~~l 167 (290) T 3gvx_A 133 ----------------IGRRVAHLAKAFGMR--------------------------VIAYTRSSVDQN---VDVISESP 167 (290) T ss_dssp ----------------HHHHHHHHHHHHTCE--------------------------EEEECSSCCCTT---CSEECSSH T ss_pred ----------------hhHHHHHHHHhhCcE--------------------------EEEEeccccccc---cccccCCh Confidence 678888888776543 344443332211 13455 99 Q ss_pred HHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCc Q psy13054 315 DTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPL 394 (1128) Q Consensus 315 deLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL 394 (1128) +|++++||+|++|||+|++|+++|+++.|++||||++|||+|||++||++||++||++|+|+||+||||++||+ +|| T Consensus 168 ~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---~pL 244 (290) T 3gvx_A 168 ADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE---ITE 244 (290) T ss_dssp HHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS---CCS T ss_pred HHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc---cch Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 999 Q ss_pred ccCCCCCCCCcccccccCC-CCChh------hhHHHHHHHHHHHH Q psy13054 395 VQLDNCGGAGLDVMIPEPL-PADHP------LVQLDNCEEFFEEL 432 (1128) Q Consensus 395 ~~lpNvg~~~~~v~tph~~-~~t~~------~~~~~n~~~~~~~~ 432 (1128) |++||| ++|||++ +++.+ .+..+|+.+|+++. T Consensus 245 ~~~~nv------ilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~ 283 (290) T 3gvx_A 245 TNLRNA------ILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGE 283 (290) T ss_dssp CCCSSE------EECCSCSSCBTTBCCHHHHHHHHHHHHHHTC-- T ss_pred hhhhhh------hcCccccCCccchHHHHHHHHHHHHHHhhhcCC Confidence 999999 9999999 66653 45678888877654 |
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
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Probab=99.97 E-value=2.2e-33 Score=330.94 Aligned_cols=228 Identities=13% Similarity=0.158 Sum_probs=203.3 Q ss_pred CCccEEE-EccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCccc Q psy13054 874 ENLKVIT-TFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIM 952 (1128) Q Consensus 874 ~~LK~I~-~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~ 952 (1128) ++++.|+ .+++|+|++ ++|.++||.|+|++++|+ +||| +++|++....+.+++| |.+ .... T Consensus 192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r-------~~~~ 253 (479) T 1v8b_A 192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR-------ATDF 253 (479) T ss_dssp TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH-------HHCC T ss_pred cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh-------cccc Confidence 6899998 889999998 899999999999999999 9999 4568888888888888 862 1223 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-hhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||+|||||+|.||+.+|++|++|||+|++||++..+. .+...|+...++++++++||+|++|+ +|+++|+++ T Consensus 254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI~~~ 329 (479) T 1v8b_A 254 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVIKLE 329 (479) T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSBCHH T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----ChhhhcCHH Confidence 7999999999999999999999999999999999876654 34556777789999999999999995 789999999 Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHH--HHhcCCceEEEEeccCCCCCCCCCccccC--CCeEECCCCC-CCcHH-HH Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVE--FLKDKKIGGAGLDVMIPEPLPADHPLVQL--DNCVLTPHTS-SATKA-VR 1104 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~--aL~~g~i~gaaLDV~e~EPl~~~~pL~~~--pNvilTPHia-g~t~e-~~ 1104 (1128) .|++||+|++|||+|||++ ||+++|.+ +|++|+|+ +++||| |+|.++|||.+ |||++| |+| |.+.+ .. T Consensus 330 ~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nvv~t-H~atghp~e~~~ 404 (479) T 1v8b_A 330 HLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRLLNL-GCATGHPAFVMS 404 (479) T ss_dssp HHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH-HSSCCSCHHHHH T ss_pred HHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCEEEE-eccCCCCchhHH Confidence 9999999999999999999 99999999 99999998 889998 55668999999 999999 999 67766 67 Q ss_pred HHHHHHHHHHHHHHHcCC--CCCCCC Q psy13054 1105 DEKSSTSAENIIRGYKGE--PMIYEL 1128 (1128) Q Consensus 1105 ~~~~~~~~~nl~~~l~G~--~l~~~v 1128 (1128) .+++..+++|+..|++|+ ++.|.| T Consensus 405 ~s~a~~~~~ni~~~~~g~~~~l~n~V 430 (479) T 1v8b_A 405 FSFCNQTFAQLDLWQNKDTNKYENKV 430 (479) T ss_dssp HHHHHHHHHHHHHHHTTTSSSCCSSE T ss_pred HHHHHHHHHHHHHHHcCCCCcCCcce Confidence 889999999999999999 888754 |
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
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Probab=99.97 E-value=1.2e-33 Score=334.35 Aligned_cols=227 Identities=13% Similarity=0.165 Sum_probs=197.0 Q ss_pred CCccEEE-EccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCccc Q psy13054 874 ENLKVIT-TFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIM 952 (1128) Q Consensus 874 ~~LK~I~-~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~ 952 (1128) +++|.|+ ..++|+|++ ++|.++||.|+|++++|+ +|||+. +|++....+.+..| |.+ .... T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~-------~~g~ 273 (494) T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR-------ATDV 273 (494) T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH-------HHCC T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh-------cccc Confidence 6889998 889999988 889999999999999999 999953 46666666666666 751 1223 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-hhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-EGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||+|||||+|.||+.+|++|++|||+|++||++..+. .....|++..++++++++||+|++|+ +|+++|+++ T Consensus 274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI~~~ 349 (494) T 3d64_A 274 MIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVINHD 349 (494) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSBCHH T ss_pred ccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----CcccccCHH Confidence 7999999999999999999999999999999999776553 24456777789999999999999997 789999999 Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccC--CCeEECCCCC-CCcHH-HHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL--DNCVLTPHTS-SATKA-VRDE 1106 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~--pNvilTPHia-g~t~e-~~~~ 1106 (1128) .|++||+|++|||+|||++ ||+++| ++|++|+|+ |+++.||+|.++|||.+ |||++| |+| |.+.+ ...+ T Consensus 350 ~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~----~~~Dv~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~ 423 (494) T 3d64_A 350 HMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK----PQVDHIIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNS 423 (494) T ss_dssp HHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE----TTEEEEECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHH T ss_pred HHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc----eeEEEEECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHH Confidence 9999999999999999999 699999 999999997 45555588889999999 999999 999 66755 7788 Q ss_pred HHHHHHHHHHHHHcCCCCCCCC Q psy13054 1107 KSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1107 ~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) ++..+++|+.+|++|+++.|.| T Consensus 424 ~a~~~~~ni~~~~~g~~~~n~V 445 (494) T 3d64_A 424 FTNQTLAQIELFTRGGEYANKV 445 (494) T ss_dssp HHHHHHHHHHHHHHGGGSCSSE T ss_pred HHHHHHHHHHHHHcCCCCCCce Confidence 9999999999999999988865 |
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
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Probab=99.90 E-value=1.5e-25 Score=265.27 Aligned_cols=214 Identities=13% Similarity=0.100 Sum_probs=162.7 Q ss_pred CCceEEE-EcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCC Q psy13054 102 ENLKVIA-TFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKF 180 (1128) Q Consensus 102 ~~LK~I~-~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1128) +++|.|+ ..++|+|++ ++|+++||.|+|+|++|+ +|||+ ++|++......++.+ |.. T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g--w~~---------- 269 (494) T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG--IKR---------- 269 (494) T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH--HHH---------- T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh--hhh---------- Confidence 5799998 889999998 889999999999999999 99994 347766543323221 211 Q ss_pred cccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhc Q psy13054 181 PAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSL 260 (1128) Q Consensus 181 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l 260 (1128) ..+..+.||++||+|+|. +|+.+++++ T Consensus 270 --------------------~~g~~L~GktVgIIG~G~---------------------------------IG~~vA~~l 296 (494) T 3d64_A 270 --------------------ATDVMIAGKIAVVAGYGD---------------------------------VGKGCAQSL 296 (494) T ss_dssp --------------------HHCCCCTTCEEEEECCSH---------------------------------HHHHHHHHH T ss_pred --------------------ccccccCCCEEEEEccCH---------------------------------HHHHHHHHH Confidence 011224568899999873 678888888 Q ss_pred cCCceeeeeeCCCCCCCCccccccCCccccceeecccccccc--cccccCCcccCHHHHhhcCCEEEEecCCCccccccc Q psy13054 261 KGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS--NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLI 338 (1128) Q Consensus 261 ~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~--~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lI 338 (1128) +++++. ++++++.... .....|+++++++|++++||+|++|+ +|+++| T Consensus 297 ~~~G~~--------------------------V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI 346 (494) T 3d64_A 297 RGLGAT--------------------------VWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVI 346 (494) T ss_dssp HTTTCE--------------------------EEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSB T ss_pred HHCCCE--------------------------EEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----Cccccc Confidence 877543 3334432221 12234677789999999999999997 899999 Q ss_pred CHHHHhcCCCCcEEEEecCCCc-cCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccC--CCCCCCCcccccccCCCC Q psy13054 339 GRKQFSLMKPTAILINTSRGGL-LDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQL--DNCGGAGLDVMIPEPLPA 415 (1128) Q Consensus 339 n~~~l~~MK~gaiLINtaRG~l-VDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~l--pNvg~~~~~v~tph~~~~ 415 (1128) |++.|++||+|++|||+|||++ ||++|| +||++|+|+ +++|| ||+|.++|||.+ ||+ ++| |++.. T Consensus 347 ~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nv------v~t-H~atg 414 (494) T 3d64_A 347 NHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRL------VNL-GCATG 414 (494) T ss_dssp CHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSB------HHH-HTSCC T ss_pred CHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCE------EEE-eCcCC Confidence 9999999999999999999999 699999 999999997 55555 577889999999 999 889 99843 Q ss_pred -Chh-------hhHHHHHHHHHHHH Q psy13054 416 -DHP-------LVQLDNCEEFFEEL 432 (1128) Q Consensus 416 -t~~-------~~~~~n~~~~~~~~ 432 (1128) +.+ ..+++|+..|+++. T Consensus 415 ~~~~~~~~~~a~~~~~ni~~~~~g~ 439 (494) T 3d64_A 415 HPSFVMSNSFTNQTLAQIELFTRGG 439 (494) T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGG T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCC Confidence 421 34567777766543 |
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
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Probab=99.90 E-value=2.7e-25 Score=262.21 Aligned_cols=198 Identities=13% Similarity=0.133 Sum_probs=158.2 Q ss_pred CCceEEE-EcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCC Q psy13054 102 ENLKVIA-TFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKF 180 (1128) Q Consensus 102 ~~LK~I~-~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1128) +++|.|+ ..++|+||+ ++|+++||.|+|+|++|. +||| +++|+++.....++.+ |... T Consensus 192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g--w~r~--------- 250 (479) T 1v8b_A 192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG--LMRA--------- 250 (479) T ss_dssp TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH--HHHH--------- T ss_pred cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh--hhhc--------- Confidence 6899999 889999998 899999999999999999 9999 4568887666555442 3210 Q ss_pred cccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhc Q psy13054 181 PAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSL 260 (1128) Q Consensus 181 ~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l 260 (1128) .+..+.||++||+|+|. +|+.+++++ T Consensus 251 ---------------------~~~~l~GktVgIIG~G~---------------------------------IG~~vA~~l 276 (479) T 1v8b_A 251 ---------------------TDFLISGKIVVICGYGD---------------------------------VGKGCASSM 276 (479) T ss_dssp ---------------------HCCCCTTSEEEEECCSH---------------------------------HHHHHHHHH T ss_pred ---------------------cccccCCCEEEEEeeCH---------------------------------HHHHHHHHH Confidence 01124568899999873 577888888 Q ss_pred cCCceeeeeeCCCCCCCCccccccCCccccceeecccccccc--cccccCCcccCHHHHhhcCCEEEEecCCCccccccc Q psy13054 261 KGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS--NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLI 338 (1128) Q Consensus 261 ~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~--~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lI 338 (1128) +++++. ++++++.... .....|++..++++++++||+|++|+ +|+++| T Consensus 277 ~~~G~~--------------------------Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI 326 (479) T 1v8b_A 277 KGLGAR--------------------------VYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVI 326 (479) T ss_dssp HHHTCE--------------------------EEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSB T ss_pred HhCcCE--------------------------EEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----Chhhhc Confidence 776543 3344433221 22345677789999999999999994 899999 Q ss_pred CHHHHhcCCCCcEEEEecCCCc-cCHHHHHH--HHHcCCeeEEEEecCCCCCCCCCCCcccC--CCCCCCCcccccccCC Q psy13054 339 GRKQFSLMKPTAILINTSRGGL-LDQEALVE--FLKDKKIGGAGLDVMIPEPLPADHPLVQL--DNCGGAGLDVMIPEPL 413 (1128) Q Consensus 339 n~~~l~~MK~gaiLINtaRG~l-VDe~AL~~--AL~sG~IagAaLDVfe~EPl~~~~pL~~l--pNvg~~~~~v~tph~~ 413 (1128) |++.|++||+|++|||+|||++ ||+++|.+ ||++|+|+ +++||| |+|.++||+.+ ||+ ++| |.+ T Consensus 327 ~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~---plp~~~~l~~l~~~nv------v~t-H~a 395 (479) T 1v8b_A 327 KLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRI---TLPNGNKIIVLARGRL------LNL-GCA 395 (479) T ss_dssp CHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEE---ECTTSCEEEEEGGGSB------HHH-HSS T ss_pred CHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEE---ECCCCCeeeEecCCCE------EEE-ecc Confidence 9999999999999999999999 99999999 99999998 999998 44568999999 999 888 988 Q ss_pred CC Q psy13054 414 PA 415 (1128) Q Consensus 414 ~~ 415 (1128) .. T Consensus 396 tg 397 (479) T 1v8b_A 396 TG 397 (479) T ss_dssp CC T ss_pred CC Confidence 43 |
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
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Probab=99.88 E-value=1.3e-22 Score=227.43 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=133.9 Q ss_pred CCChhhhhcCCCCccEEEEccccCCcCCh-hhhhhCCcEEEEcC------CCChhHHHHHHHHHHHHHHhccHHHHHHHH Q psy13054 863 SRNKVKTPKRTENLKVITTFSVGYDHLEL-HEIKARGIRVGSVG------HISSDTVAEYNIGLAIAVSRRFQEGRKCIT 935 (1128) Q Consensus 863 ~i~~~~l~~~~~~LK~I~~~~aGvd~idl-~a~~~~GI~V~n~p------~~~a~sVAE~alaliL~~~R~i~~~~~~~~ 935 (1128) ++++++++.+ |+||+|+ +|+|++|+ ++|+++||.|+|++ ++++.+|||++++++|... T Consensus 85 ~~~~~~l~~~-~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~----------- 149 (293) T 3d4o_A 85 VLTEEMIEKT-PNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHT----------- 149 (293) T ss_dssp BCCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHC----------- T ss_pred cchHHHHHhC-CCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHhc----------- Confidence 5789999997 9999997 89999998 89999999999998 8999999999999998531 Q ss_pred cCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc---cChHhhhccC Q psy13054 936 SGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL---VPLDTLCAES 1011 (1128) Q Consensus 936 ~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~---~~l~ell~~s 1011 (1128) ..++.|++|||||+|.||+.+|++|++|||+|++||++..+.. ..+.|+.. .++++++++| T Consensus 150 ---------------~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~a 214 (293) T 3d4o_A 150 ---------------DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDV 214 (293) T ss_dssp ---------------SSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTC T ss_pred ---------------CCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCC Confidence 1258999999999999999999999999999999997765433 34456553 4788999999 Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcc Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) |+|++|+|+ ++++++.|+.||+++++||++||.. T Consensus 215 DvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~ 248 (293) T 3d4o_A 215 DVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG 248 (293) T ss_dssp SEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC T ss_pred CEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC Confidence 999999996 7899999999999999999999764 |
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
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Probab=99.86 E-value=2.9e-23 Score=246.45 Aligned_cols=226 Identities=15% Similarity=0.129 Sum_probs=182.4 Q ss_pred CccEE-EEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccc Q psy13054 875 NLKVI-TTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG 953 (1128) Q Consensus 875 ~LK~I-~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~ 953 (1128) +++-+ ...++|+|++ .++.++||.++|+++.|+ +|||+. +|++....+.+..+ |.+ ..... T Consensus 210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r-------~~~~~ 271 (494) T 3ce6_A 210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INR-------GTDAL 271 (494) T ss_dssp HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHH-------HHCCC T ss_pred CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHh-------ccCCC Confidence 34444 4779999998 888999999999999999 999953 34444444433333 431 01125 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) +.|++|+|+|+|.||+.+|++++++|++|+++|+...+.. +.+.|+...+++++++++|+|+.|++ |.++|+++. T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atg----t~~~i~~~~ 347 (494) T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATG----NKDIIMLEH 347 (494) T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSS----SSCSBCHHH T ss_pred CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCC----CHHHHHHHH Confidence 7899999999999999999999999999999987766543 55678877789999999999999875 567899999 Q ss_pred HccCCCCcEEEEcCCCcc-cCHHHHHH-HHhcCCceEEEEeccCCCCCCCCCc--cccCCCeE----ECCCCCCCcHHHH Q psy13054 1033 FSLMKPTAILVNTSRGGL-LDQEALVE-FLKDKKIGGAGLDVMIPEPLPADHP--LVQLDNCV----LTPHTSSATKAVR 1104 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~l-Vde~aL~~-aL~~g~i~gaaLDV~e~EPl~~~~p--L~~~pNvi----lTPHiag~t~e~~ 1104 (1128) |+.||+|+++||+||+.. +|+++|.. +|++++|. +++|+++.+|. +++ |+..+|++ +|||+++.+.+. T Consensus 348 l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~--~~~l~LL~~grlvnL~~~TPH~a~~~~~s- 423 (494) T 3ce6_A 348 IKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDT--GRSIIVLSEGRLLNLGNATGHPSFVMSNS- 423 (494) T ss_dssp HHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTT--CCEEEEEGGGSCHHHHHSCCSCHHHHHHH- T ss_pred HHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCc--chHHHHHhCCCEEeccCCCCCccccchHH- Confidence 999999999999999999 99999998 89888987 55899876432 344 66678998 999999988876 Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCC Q psy13054 1105 DEKSSTSAENIIRGYKGEPMIYEL 1128 (1128) Q Consensus 1105 ~~~~~~~~~nl~~~l~G~~l~~~v 1128 (1128) +...+.++++.|.+|+++.+.| T Consensus 424 --~~~qa~~ai~~~~~g~~~~~~V 445 (494) T 3ce6_A 424 --FANQTIAQIELWTKNDEYDNEV 445 (494) T ss_dssp --HHHHHHHHHHHHHTGGGCCSSE T ss_pred --HHHHHHHHHHHHHcCCCCCCEE Confidence 4778999999999988776543 |
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
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Probab=99.83 E-value=2.9e-20 Score=215.53 Aligned_cols=218 Identities=15% Similarity=0.212 Sum_probs=166.7 Q ss_pred HHhhccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEE----------EcCCCChhHHHHHHHH Q psy13054 849 KLLKAFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVG----------SVGHISSDTVAEYNIG 918 (1128) Q Consensus 849 ~~l~~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~----------n~p~~~a~sVAE~ala 918 (1128) +..++++++..+..++++++.... ++..++.....++|...++++.++||++. |.|.++ +.||++.. T Consensus 63 ~~~~~adii~~vk~p~~~e~~~l~-~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~ 139 (377) T 2vhw_A 63 QVWADADLLLKVKEPIAAEYGRLR-HGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGR 139 (377) T ss_dssp HHHHHCSEEECSSCCCGGGGGGCC-TTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHH T ss_pred HHhccCCEEEEeCCCChHHHhhcC-CCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHH Confidence 344556655433456666666655 77777777788889999999999999997 555554 56699985 Q ss_pred HHHHHH-hccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh Q psy13054 919 LAIAVS-RRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA 996 (1128) Q Consensus 919 liL~~~-R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~ 996 (1128) +++.+. |++ ...+.|+|. .+. ...++.|++|+|+|+|.||+.+|+.++++|++|+++|++..+.+ ..+ T Consensus 140 ~a~~~a~r~l----~~~~~g~~~-----~~~-~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~ 209 (377) T 2vhw_A 140 LAAQVGAYHL----MRTQGGRGV-----LMG-GVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDA 209 (377) T ss_dssp HHHHHHHHHT----SGGGTSCCC-----CTT-CBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH T ss_pred HHHHHHHHHH----HHhcCCCcc-----ccc-CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH Confidence 554444 665 234445543 111 23378999999999999999999999999999999997765543 222 Q ss_pred -cCCc-------ccChHhhhccCCEEEEec--CCCcccccccCHHHHccCCCCcEEEEcC--CCcccCHHHHHHHHhcCC Q psy13054 997 -LGAQ-------LVPLDTLCAESDFIFVTC--ALTKDTEQLIGRKQFSLMKPTAILVNTS--RGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 997 -~g~~-------~~~l~ell~~sDvV~l~l--Plt~~T~~li~~~~l~~mk~ga~lIN~a--RG~lVde~aL~~aL~~g~ 1064 (1128) .|.. ..+++++++++|+|+.++ |.+ +|.++++++.++.||+|+++||+| +|+ T Consensus 210 ~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg--------------- 273 (377) T 2vhw_A 210 EFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG--------------- 273 (377) T ss_dssp HTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC--------------- T ss_pred hcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC--------------- Confidence 3432 236788999999999966 655 889999999999999999999999 332 Q ss_pred ceEEEEeccCC-CCCCCCCccccCCCeE--ECCCCCCCcHH Q psy13054 1065 IGGAGLDVMIP-EPLPADHPLVQLDNCV--LTPHTSSATKA 1102 (1128) Q Consensus 1065 i~gaaLDV~e~-EPl~~~~pL~~~pNvi--lTPHiag~t~e 1102 (1128) ||+. ||.+.++|+|..+||+ +|||+++.+.. T Consensus 274 -------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~ 307 (377) T 2vhw_A 274 -------CFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPK 307 (377) T ss_dssp -------SBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHH T ss_pred -------ccccccCCCCCCCEEEECCEEEEecCCcchhhHH Confidence 7888 9999899999999998 99999999876 |
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
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Probab=99.82 E-value=2.2e-20 Score=209.99 Aligned_cols=158 Identities=15% Similarity=0.154 Sum_probs=128.1 Q ss_pred CChhhhhcCCCCccEEEEccccCCcCC-hhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccc Q psy13054 864 RNKVKTPKRTENLKVITTFSVGYDHLE-LHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALK 942 (1128) Q Consensus 864 i~~~~l~~~~~~LK~I~~~~aGvd~id-l~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~ 942 (1128) +++++++.+ |++|+|+ +|+|++| +++|.++||.|+|+|+++ ++ ++.|++..+ +|.|... T Consensus 88 ~~~~~l~~~-~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~~~ 147 (300) T 2rir_A 88 LKQDHLDRT-PAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIMLA 147 (300) T ss_dssp CCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHHHH T ss_pred chHHHHhhc-CCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHHHH Confidence 789999997 9999998 8999999 999999999999999975 33 234555443 3445310 Q ss_pred cccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc---ccChHhhhccCCEEEEec Q psy13054 943 QTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ---LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 943 ~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~---~~~l~ell~~sDvV~l~l 1018 (1128) ......+++|++|||||+|.||+.+|++|++|||+|++||++..+.. ..+.|++ ..++++++++||+|++|+ T Consensus 148 ----~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~ 223 (300) T 2rir_A 148 ----IQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTI 223 (300) T ss_dssp ----HHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECC T ss_pred ----HHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECC Confidence 01122479999999999999999999999999999999997765433 3344554 357899999999999999 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCcc Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) |+ ++++++.|+.||+++++||++||.. T Consensus 224 p~-----~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300) T 2rir_A 224 PS-----MILNQTVLSSMTPKTLILDLASRPG 250 (300) T ss_dssp SS-----CCBCHHHHTTSCTTCEEEECSSTTC T ss_pred Ch-----hhhCHHHHHhCCCCCEEEEEeCCCC Confidence 97 6899999999999999999999864 |
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
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Probab=99.78 E-value=2.1e-19 Score=201.32 Aligned_cols=158 Identities=16% Similarity=0.170 Sum_probs=127.2 Q ss_pred ccCCCeEEEeccCCCCchHHHHhccc-ccEEEeCCCCC------CCCHHHHHHHhcCcceeeec---------------- Q psy13054 511 IMSKPKLFLTRDDYSRVPAFEILGEM-FDIITYPASEG------QIPRDIFIEKLRGCSALLCT---------------- 567 (1128) Q Consensus 511 ~m~k~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---------------- 567 (1128) +|+++||++...+......++.|.+. +++..+..++. ....+++.+.+.+||+++++ T Consensus 2 ~~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~ 81 (293) T 3d4o_A 2 MLTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSN 81 (293) T ss_dssp CCTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCS T ss_pred CccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeeccccc Confidence 47889999986554444567777765 45554432222 22446777889999999985 Q ss_pred cccccchhhhhccCCceecccccCCCccccccCCCCCceeeeecccccccCCCeEEEEEcccccCccch-HHHHHcCCeE Q psy13054 568 SRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLEL-HEIKARGIRV 646 (1128) Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Lk~I~~~g~G~D~iD~-~~a~~~gI~v 646 (1128) ..+++++++|+.. |+||+|+ +|+||+|+ ++|+++||.| T Consensus 82 ~~~~~~~~~l~~~--------------------------------------~~l~~i~---~G~d~id~~~~~~~~gi~v 120 (293) T 3d4o_A 82 ESIVLTEEMIEKT--------------------------------------PNHCVVY---SGISNTYLNQCMKKTNRTL 120 (293) T ss_dssp CCCBCCHHHHHTS--------------------------------------CTTCEEE---ESSCCHHHHHHHHHHTCEE T ss_pred CCccchHHHHHhC--------------------------------------CCCCEEE---ecCCCHHHHHHHHHcCCeE Confidence 3456888888887 8999997 89999998 9999999999 Q ss_pred EecC------CCchHhHHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccCCccCCCCCCEEEEEecChhhHHHHHHH Q psy13054 647 GSVG------HISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLL 720 (1128) Q Consensus 647 ~n~p------g~~~~aVAE~ai~llLa~~R~i~~~~~~~r~G~W~~~~~~~~~~~~~~l~gktvGIiG~G~IG~~va~r~ 720 (1128) +|+| ++|+.+|||++++++|.. .+.++.|||+||||+|+||+.+|+++ T Consensus 121 ~~~~~~~~~~~~~~~svae~a~~~~l~~--------------------------~~~~l~g~~v~IiG~G~iG~~~a~~l 174 (293) T 3d4o_A 121 VKLMERDDIAIYNSIPTAEGTIMMAIQH--------------------------TDFTIHGANVAVLGLGRVGMSVARKF 174 (293) T ss_dssp EEGGGCHHHHHHHHHHHHHHHHHHHHHH--------------------------CSSCSTTCEEEEECCSHHHHHHHHHH T ss_pred EEecCCceeeeeccHhHHHHHHHHHHHh--------------------------cCCCCCCCEEEEEeeCHHHHHHHHHH Confidence 9998 899999999999999863 12468999999999999999999999 Q ss_pred hhCCCeEEEEcCCCc Q psy13054 721 KAFKVSKILYTSRRV 735 (1128) Q Consensus 721 ~afg~~vi~y~~~~~ 735 (1128) ++|||+|++||+... T Consensus 175 ~~~G~~V~~~dr~~~ 189 (293) T 3d4o_A 175 AALGAKVKVGARESD 189 (293) T ss_dssp HHTTCEEEEEESSHH T ss_pred HhCCCEEEEEECCHH Confidence 999999999998543 |
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
---|
Probab=99.73 E-value=2e-19 Score=210.02 Aligned_cols=152 Identities=15% Similarity=0.224 Sum_probs=127.8 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhh-CCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCE-EEEecCCCcccccccCHH Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKA-FKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDF-IFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDv-V~l~lPlt~~T~~li~~~ 1031 (1128) ++||||||+|+|+||+.+|++|++ |||+|++|++.... . ......++++|++.+|. .++ +|+ ++|++ |+.+ T Consensus 210 l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~-~---~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~~ 282 (419) T 1gtm_A 210 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG-I---YNPDGLNADEVLKWKNEHGSV-KDF-PGATN-ITNE 282 (419) T ss_dssp STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE-E---EEEEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECHH T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc-c---cCccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCHH Confidence 899999999999999999999999 99999999544332 1 11123477888776654 333 677 68888 8999 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCC-CccccCCCeEECCCC----C--------- Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD-HPLVQLDNCVLTPHT----S--------- 1097 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~-~pL~~~pNvilTPHi----a--------- 1097 (1128) .|..||+ .+|||+|||.+||+++ +++|+.+.|.++| +||++++ +|||..+||++|||+ | T Consensus 283 ~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt~s~~E~ 355 (419) T 1gtm_A 283 ELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEW 355 (419) T ss_dssp HHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHHHHHHHH T ss_pred HHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcceeeeehh Confidence 9999998 5999999999999999 6999999999987 8998754 799999999999999 6 Q ss_pred --------CCcHHHHHHHHHHHHHHHHHHH Q psy13054 1098 --------SATKAVRDEKSSTSAENIIRGY 1119 (1128) Q Consensus 1098 --------g~t~e~~~~~~~~~~~nl~~~l 1119 (1128) |.+++..+++.+.+.+++.+++ T Consensus 356 ~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~ 385 (419) T 1gtm_A 356 VQNITGYYWTIEEVRERLDKKMTKAFYDVY 385 (419) T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHHHHHHHH T ss_pred hhcccccccCHHHHHHHHHHHHHHHHHHHH Confidence 6788899999999999998876 |
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
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Probab=99.69 E-value=2.6e-17 Score=184.88 Aligned_cols=164 Identities=14% Similarity=0.151 Sum_probs=121.4 Q ss_pred ccCCCeEEEeccCCCCchHHHHhcccc-cEEEeCCCCCCC------CHHHHHHHhcCcceeee---cc-----------c Q psy13054 511 IMSKPKLFLTRDDYSRVPAFEILGEMF-DIITYPASEGQI------PRDIFIEKLRGCSALLC---TS-----------R 569 (1128) Q Consensus 511 ~m~k~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~-----------~ 569 (1128) +|+++||++...+......++.|.+.+ ++..+..++... ..+++.+.+.+||++++ +. . T Consensus 4 ~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~ 83 (300) T 2rir_A 4 MLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN 83 (300) T ss_dssp CCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc Confidence 578889999966544445677777654 444332222211 23345677889999987 22 3 Q ss_pred cc--cchhhhhccCCceecccccCCCccccccCCCCCceeeeecccccccCCCeEEEEEcccccCccc-hHHHHHcCCeE Q psy13054 570 DR--VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLE-LHEIKARGIRV 646 (1128) Q Consensus 570 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Lk~I~~~g~G~D~iD-~~~a~~~gI~v 646 (1128) ++ +++++++.. |++|+|+ +|+||+| +++|+++||.| T Consensus 84 ~~~~~~~~~l~~~--------------------------------------~~l~~i~---~g~~~~d~~~~~~~~gi~v 122 (300) T 2rir_A 84 EEVVLKQDHLDRT--------------------------------------PAHCVIF---SGISNAYLENIAAQAKRKL 122 (300) T ss_dssp SCEECCHHHHHTS--------------------------------------CTTCEEE---ESSCCHHHHHHHHHTTCCE T ss_pred CCccchHHHHhhc--------------------------------------CCCCEEE---EecCCHHHHHHHHHCCCEE Confidence 44 788888776 7999998 8999999 99999999999 Q ss_pred EecCCCchHhHHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccCCccCCCCCCEEEEEecChhhHHHHHHHhhCCCe Q psy13054 647 GSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVS 726 (1128) Q Consensus 647 ~n~pg~~~~aVAE~ai~llLa~~R~i~~~~~~~r~G~W~~~~~~~~~~~~~~l~gktvGIiG~G~IG~~va~r~~afg~~ 726 (1128) +|+|+++ +| ++.|++..+ +|.|..... ..+.+++|+|+||||+|+||+++|+++++|||+ T Consensus 123 ~~~~~~~--~v---------~~~r~~~~~-----~g~~~~~~~----~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~ 182 (300) T 2rir_A 123 VKLFERD--DI---------AIYNSIPTV-----EGTIMLAIQ----HTDYTIHGSQVAVLGLGRTGMTIARTFAALGAN 182 (300) T ss_dssp EEGGGSH--HH---------HHHHHHHHH-----HHHHHHHHH----TCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCE T ss_pred EeecCCC--ce---------EEEcCccHH-----HHHHHHHHH----hcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCE Confidence 9999985 33 346776555 566743211 235689999999999999999999999999999 Q ss_pred EEEEcCCCc Q psy13054 727 KILYTSRRV 735 (1128) Q Consensus 727 vi~y~~~~~ 735 (1128) |++||+... T Consensus 183 V~~~d~~~~ 191 (300) T 2rir_A 183 VKVGARSSA 191 (300) T ss_dssp EEEEESSHH T ss_pred EEEEECCHH Confidence 999998643 |
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
---|
Probab=99.68 E-value=3.9e-17 Score=188.77 Aligned_cols=243 Identities=15% Similarity=0.180 Sum_probs=158.8 Q ss_pred ccceeEEeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEE---EcCCC-Ch----hHHHHHHH--HHHHH Q psy13054 853 AFKVSKILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVG---SVGHI-SS----DTVAEYNI--GLAIA 922 (1128) Q Consensus 853 ~~~~~~~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~---n~p~~-~a----~sVAE~al--aliL~ 922 (1128) +++++.-...++ .+.++.+.+++++|.....+.|..+++++.++||++. +.+.. .. .++++.+- +.+++ T Consensus 65 ~ad~il~vk~p~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a 143 (369) T 2eez_A 65 GAEMVVKVKEPL-PEEYGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVG 143 (369) T ss_dssp TSSEEECSSCCC-GGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHH T ss_pred cCCEEEEECCCC-HHHHhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHH Confidence 455543333444 4446664478999999999999999999999999998 44432 11 44555444 44433 Q ss_pred HHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-cCCc Q psy13054 923 VSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-LGAQ 1000 (1128) Q Consensus 923 ~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-~g~~ 1000 (1128) +.+ +..... .++.|. ....++.+++|+|+|.|.||+.+++.++++|++|+++|++..+.+ ..+ .+.. T Consensus 144 ~~~-l~~~~~--g~~~~~--------~~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~ 212 (369) T 2eez_A 144 AQF-LEKPKG--GRGVLL--------GGVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGR 212 (369) T ss_dssp HHH-TSGGGT--SCCCCT--------TCBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS T ss_pred HHH-HHHhcC--CCceec--------CCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCce Confidence 322 221110 011222 122378999999999999999999999999999999997765433 222 3432 Q ss_pred -------ccChHhhhccCCEEEEecCCCc-ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec Q psy13054 1001 -------LVPLDTLCAESDFIFVTCALTK-DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128) Q Consensus 1001 -------~~~l~ell~~sDvV~l~lPlt~-~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128) ..+++++++++|+|+.|++... .+.+++.++.++.||+++++||+|-. .| |+ +|| T Consensus 213 ~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~ 275 (369) T 2eez_A 213 VITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VET 275 (369) T ss_dssp EEEEECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-------------------------- T ss_pred EEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCc Confidence 2357788999999999999776 68889999999999999999999821 12 54 999 Q ss_pred cCCCCCCCCCccccCCCeE---------ECCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCC Q psy13054 1073 MIPEPLPADHPLVQLDNCV---------LTPHTSSA--TKAVRDEKSSTSAENIIRGYKGEPMIY 1126 (1128) Q Consensus 1073 ~e~EPl~~~~pL~~~pNvi---------lTPHiag~--t~e~~~~~~~~~~~nl~~~l~G~~l~~ 1126 (1128) + ||.+.++|++..+|+. +|||+|+. +.+.+..+.+.+.+++..+..++++.+ T Consensus 276 ~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~ 338 (369) T 2eez_A 276 I--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAALLK 338 (369) T ss_dssp ------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHHHHT T ss_pred c--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChHHhc Confidence 8 7877788999999999 89998884 577888999999988877777765443 |
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
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Probab=99.62 E-value=1.1e-15 Score=177.48 Aligned_cols=155 Identities=16% Similarity=0.219 Sum_probs=118.1 Q ss_pred ccccCCcC-ChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEE Q psy13054 882 FSVGYDHL-ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVG 960 (1128) Q Consensus 882 ~~aGvd~i-dl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvG 960 (1128) .++|+..+ .+.+..+.+|+|.|++...+.+..+...+..-++...+ . +. ...++.||+|| T Consensus 155 TttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi----~--ra-------------tg~~L~GktVg 215 (436) T 3h9u_A 155 TTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI----K--RA-------------TDVMIAGKTAC 215 (436) T ss_dssp SHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH----H--HH-------------HCCCCTTCEEE T ss_pred cCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHH----H--Hh-------------cCCcccCCEEE Confidence 34555543 24456689999999987555444433333222222211 1 11 11258999999 Q ss_pred EEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCC Q psy13054 961 IVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPT 1039 (1128) Q Consensus 961 IIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~g 1039 (1128) |+|+|.||+.+|++|++|||+|+++|++..+.. +...|++.++++|++++||||++ ++.|+++|+++.|++||+| T Consensus 216 IiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~g 291 (436) T 3h9u_A 216 VCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRDD 291 (436) T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCTT T ss_pred EEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCCC Confidence 999999999999999999999999987654443 45678888899999999999995 5678999999999999999 Q ss_pred cEEEEcCCCcc-cCHHHHHHH Q psy13054 1040 AILVNTSRGGL-LDQEALVEF 1059 (1128) Q Consensus 1040 a~lIN~aRG~l-Vde~aL~~a 1059 (1128) +++||+|||.+ ||.++|.+. T Consensus 292 AIVINvgRg~vEID~~~L~~~ 312 (436) T 3h9u_A 292 AIVCNIGHFDTEIQVAWLKAN 312 (436) T ss_dssp EEEEECSSSGGGBCHHHHHHH T ss_pred cEEEEeCCCCCccCHHHHHhh Confidence 99999999997 999999864 |
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
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Probab=99.59 E-value=2.6e-15 Score=174.02 Aligned_cols=153 Identities=17% Similarity=0.201 Sum_probs=116.7 Q ss_pred cccCCcC-ChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEE Q psy13054 883 SVGYDHL-ELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGI 961 (1128) Q Consensus 883 ~aGvd~i-dl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGI 961 (1128) ++|+-.+ ......+..+++.|+.. |+..+-+.....+.+.+.....+.. ...+.|||+|| T Consensus 192 tTGv~rL~~m~~~g~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI~Rat---------------g~~L~GKTVgV 252 (464) T 3n58_A 192 TTGVNRLYQLQKKGLLPFPAINVND----SVTKSKFDNKYGCKESLVDGIRRGT---------------DVMMAGKVAVV 252 (464) T ss_dssp HHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHHHHHH---------------CCCCTTCEEEE T ss_pred ccchHHHHHHHHcCCCCCCEEeecc----HhhhhhhhhhhcchHHHHHHHHHhc---------------CCcccCCEEEE Confidence 4555443 12333456789999864 5666666555555544443332111 12589999999 Q ss_pred EEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCc Q psy13054 962 VGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 1040 (1128) Q Consensus 962 IG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga 1040 (1128) +|+|.||+.+|++|++|||+|++++..+.+.. +...|++.+++++++++||||+++. .|+++|+++.|++||+|+ T Consensus 253 IG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GA 328 (464) T 3n58_A 253 CGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMC 328 (464) T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTE T ss_pred ECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCe Confidence 99999999999999999999999986544332 4456888889999999999999853 578999999999999999 Q ss_pred EEEEcCCCcc-cCHHHHHH Q psy13054 1041 ILVNTSRGGL-LDQEALVE 1058 (1128) Q Consensus 1041 ~lIN~aRG~l-Vde~aL~~ 1058 (1128) +|||+|||.+ ||.++|.+ T Consensus 329 ILINvGRgdvEID~~aL~~ 347 (464) T 3n58_A 329 IVGNIGHFDNEIQVAALRN 347 (464) T ss_dssp EEEECSSSTTTBTCGGGTT T ss_pred EEEEcCCCCcccCHHHHHh Confidence 9999999998 99999974 |
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
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Probab=99.58 E-value=9.2e-15 Score=169.39 Aligned_cols=250 Identities=11% Similarity=0.115 Sum_probs=169.6 Q ss_pred ccchhhhhhhhccCCceEEEcCCC--CCCCCHHHHH-----------HhcCCceEEEeCCCCCCCHHHHhccCCCceEEE Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVS--EGRMPRDIFI-----------EKLKGCSALLCNPHQKVDKEVLDRSGENLKVIA 108 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~--~~~~~~eel~-----------~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~ 108 (1128) .+.|+...+|.. ..++|.+-+.. ....+.+++. +..+++|+|+ ....++++++.... ++..+++ T Consensus 17 ~ltP~~v~~L~~-~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii~-~vk~p~~~e~~~l~-~~~~l~~ 93 (377) T 2vhw_A 17 AITPAGVAELTR-RGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLL-KVKEPIAAEYGRLR-HGQILFT 93 (377) T ss_dssp SCCHHHHHHHHH-TTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEEE-CSSCCCGGGGGGCC-TTCEEEE T ss_pred CcCHHHHHHHHh-CCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEEE-EeCCCChHHHhhcC-CCCEEEE Confidence 688899888853 46788663311 1134556655 3345689775 45677888887754 7888888 Q ss_pred EcCcccccccHHHHHhCCcEEE----------ecCCCCchhHHHHHHHHHHHHh-hchHHHHHHHHhhhhhHHHHhhccC Q psy13054 109 TFSVGHDHLHLDEIKSRGIRVG----------TVGPVSSDTVAEYNIGLAIAVS-RRFQQRHNWIARLSSFAEIQTRALD 177 (1128) Q Consensus 109 ~~gvG~DnIDl~aa~erGI~V~----------n~pg~~~~aVAE~alalmL~l~-R~i~~~~~~~~~~~~~~~~~~~~~~ 177 (1128) ....++|...++++.++||++. |+|.+++.+ |++.++++.+. |++.... .+ + T Consensus 94 ~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~~a--e~ag~~a~~~a~r~l~~~~----~g-~---------- 156 (377) T 2vhw_A 94 FLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPMS--EVAGRLAAQVGAYHLMRTQ----GG-R---------- 156 (377) T ss_dssp CCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHH--HHHHHHHHHHHHHHTSGGG----TS-C---------- T ss_pred EecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCchH--HHHHHHHHHHHHHHHHHhc----CC-C---------- Confidence 8888999999999999999998 677776554 99985555554 6663211 00 0 Q ss_pred CCCcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHh Q psy13054 178 TKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEIN 257 (1128) Q Consensus 178 ~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va 257 (1128) +.|. .+ +. ...+++++|+|.|. +|+.++ T Consensus 157 ~~~~------~~-----------~~--~l~g~~V~ViG~G~---------------------------------iG~~~a 184 (377) T 2vhw_A 157 GVLM------GG-----------VP--GVEPADVVVIGAGT---------------------------------AGYNAA 184 (377) T ss_dssp CCCT------TC-----------BT--TBCCCEEEEECCSH---------------------------------HHHHHH T ss_pred cccc------cC-----------CC--CCCCCEEEEECCCH---------------------------------HHHHHH Confidence 1110 00 00 13457888888752 566777 Q ss_pred hhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccc--c-ccccCC-------cccCHHHHhhcCCEEEEe Q psy13054 258 NSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS--N-GTALGA-------QLVPLDTLCAESDFIFVT 327 (1128) Q Consensus 258 ~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~--~-~~~~g~-------~~vsLdeLl~~SDiVslh 327 (1128) +.++++++.+. .++..... . .+.+|. ...+++++++++|+|+.+ T Consensus 185 ~~a~~~Ga~V~--------------------------~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~ 238 (377) T 2vhw_A 185 RIANGMGATVT--------------------------VLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGA 238 (377) T ss_dssp HHHHHTTCEEE--------------------------EEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEEC T ss_pred HHHHhCCCEEE--------------------------EEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEEC Confidence 77766554321 22211100 0 011222 234688999999999994 Q ss_pred --cCCCcccccccCHHHHhcCCCCcEEEEec--CCCccCHHHHHHHHHcCCeeEEEEecCCC-CCCCCCCCcccCCCCCC Q psy13054 328 --CALTKDTEQLIGRKQFSLMKPTAILINTS--RGGLLDQEALVEFLKDKKIGGAGLDVMIP-EPLPADHPLVQLDNCGG 402 (1128) Q Consensus 328 --~PLT~~T~~lIn~~~l~~MK~gaiLINta--RG~lVDe~AL~~AL~sG~IagAaLDVfe~-EPl~~~~pL~~lpNvg~ 402 (1128) +|.+ +|.++|+++.++.||+|+++||+| ||+ ||+. ||.+.++|++.++|+ T Consensus 239 ~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v-- 293 (377) T 2vhw_A 239 VLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDT-- 293 (377) T ss_dssp CCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTE-- T ss_pred CCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCE-- Confidence 4776 899999999999999999999999 553 8998 998889999999998 Q ss_pred CCccc--ccccCCCCChh Q psy13054 403 AGLDV--MIPEPLPADHP 418 (1128) Q Consensus 403 ~~~~v--~tph~~~~t~~ 418 (1128) . .+||+++++.. T Consensus 294 ----~i~~~phl~~~~~~ 307 (377) T 2vhw_A 294 ----LFYCVANMPASVPK 307 (377) T ss_dssp ----EEECBTTGGGGSHH T ss_pred ----EEEecCCcchhhHH Confidence 6 89999998753 |
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
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Probab=99.56 E-value=7.3e-16 Score=183.16 Aligned_cols=198 Identities=13% Similarity=0.060 Sum_probs=142.5 Q ss_pred EEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCccccc Q psy13054 106 VIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQ 185 (1128) Q Consensus 106 ~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1128) ++-..++|+|++ .++.++||.++|++++|. +|||+ .+|+++........+ |.. . T Consensus 214 vveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g--~~r----~---------- 267 (494) T 3ce6_A 214 VTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG--INR----G---------- 267 (494) T ss_dssp EEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH--HHH----H---------- T ss_pred EEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH--HHh----c---------- Confidence 344789999998 788999999999999999 99994 345554432222111 110 0 Q ss_pred ccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCce Q psy13054 186 NLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDI 265 (1128) Q Consensus 186 ~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~ 265 (1128) .+....|++++|+|+|. ||+.+++.++++++ T Consensus 268 ----------------~~~~l~GktV~IiG~G~---------------------------------IG~~~A~~lka~Ga 298 (494) T 3ce6_A 268 ----------------TDALIGGKKVLICGYGD---------------------------------VGKGCAEAMKGQGA 298 (494) T ss_dssp ----------------HCCCCTTCEEEEECCSH---------------------------------HHHHHHHHHHHTTC T ss_pred ----------------cCCCCCcCEEEEEccCH---------------------------------HHHHHHHHHHHCCC Confidence 00113467888998863 56677777766543 Q ss_pred eeeeeCCCCCCCCccccccCCccccceeeccccccc--ccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHH Q psy13054 266 FEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFER--SNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 343 (1128) Q Consensus 266 ~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~--~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l 343 (1128) . ++.++..+. ..+.+.|++.++++++++.||+|+.|+ .|.++|+++.| T Consensus 299 ~--------------------------Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~at----gt~~~i~~~~l 348 (494) T 3ce6_A 299 R--------------------------VSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTAT----GNKDIIMLEHI 348 (494) T ss_dssp E--------------------------EEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECS----SSSCSBCHHHH T ss_pred E--------------------------EEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECC----CCHHHHHHHHH Confidence 2 233332221 123446777789999999999999986 57789999999 Q ss_pred hcCCCCcEEEEecCCCc-cCHHHHHH-HHHcCCeeEEEEecCCCCCCCCCCC--cccCCCCCCCCccc----ccccCCCC Q psy13054 344 SLMKPTAILINTSRGGL-LDQEALVE-FLKDKKIGGAGLDVMIPEPLPADHP--LVQLDNCGGAGLDV----MIPEPLPA 415 (1128) Q Consensus 344 ~~MK~gaiLINtaRG~l-VDe~AL~~-AL~sG~IagAaLDVfe~EPl~~~~p--L~~lpNvg~~~~~v----~tph~~~~ 415 (1128) +.||+|+++||+||+.+ ||+++|.+ +|++++|. +++|||+.+| .+++ ++..+++ + .|||+++. T Consensus 349 ~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~--~~~~l~LL~~grl------vnL~~~TPH~a~~ 419 (494) T 3ce6_A 349 KAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGD--TGRSIIVLSEGRL------LNLGNATGHPSFV 419 (494) T ss_dssp HHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTT--TCCEEEEEGGGSC------HHHHHSCCSCHHH T ss_pred HhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCC--cchHHHHHhCCCE------EeccCCCCCcccc Confidence 99999999999999999 99999999 89999997 6789987643 2455 5566776 5 78998765 Q ss_pred Ch Q psy13054 416 DH 417 (1128) Q Consensus 416 t~ 417 (1128) +. T Consensus 420 ~~ 421 (494) T 3ce6_A 420 MS 421 (494) T ss_dssp HH T ss_pred ch Confidence 44 |
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
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Probab=99.53 E-value=8.6e-15 Score=170.86 Aligned_cols=181 Identities=15% Similarity=0.191 Sum_probs=132.6 Q ss_pred CChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHH---HHHHhccHHHHHHHHcCCCc Q psy13054 864 RNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLA---IAVSRRFQEGRKCITSGEWA 940 (1128) Q Consensus 864 i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alali---L~~~R~i~~~~~~~~~g~w~ 940 (1128) .+++.++.+.+++++|+..+.|+|++|++++.++||+|.+ .++|+|++.++. |+....+.. ...++.+.|. T Consensus 82 p~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag-~~av~~~~~~ 155 (401) T 1x13_A 82 PLDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAG-YRAIVEAAHE 155 (401) T ss_dssp CCHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHH-HHHHHHHHHH T ss_pred CCHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHH-HHHHHHHHHh Confidence 3567777755789999999999999999999999999964 455566555553 333333322 2233333322 Q ss_pred cccccccCCc---ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-------------- Q psy13054 941 LKQTHIIGPN---IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-------------- 1002 (1128) Q Consensus 941 ~~~~~~~~~~---~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-------------- 1002 (1128) ...+ .... ..++.|++|+|+|+|.||+.+++.++++|++|+++|++..+.+ ..+.|.+.+ T Consensus 156 ~~~~--~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~ 233 (401) T 1x13_A 156 FGRF--FTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGY 233 (401) T ss_dssp CSSC--SSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHH T ss_pred cccc--cCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccc Confidence 0000 0000 1158899999999999999999999999999999998776544 445565543 Q ss_pred --------------ChHhhhccCCEEEEe--cCCCcccccccCHHHHccCCCCcEEEEcC--CCcccCH Q psy13054 1003 --------------PLDTLCAESDFIFVT--CALTKDTEQLIGRKQFSLMKPTAILVNTS--RGGLLDQ 1053 (1128) Q Consensus 1003 --------------~l~ell~~sDvV~l~--lPlt~~T~~li~~~~l~~mk~ga~lIN~a--RG~lVde 1053 (1128) +++++++.+|+|+.| +|.. .+.++++++.++.||+|+++||+| ||+.+++ T Consensus 234 ~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~ 301 (401) T 1x13_A 234 AKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY 301 (401) T ss_dssp HHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT T ss_pred hhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc Confidence 267888999999999 5543 467899999999999999999999 8887765 |
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
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Probab=99.52 E-value=4e-16 Score=182.41 Aligned_cols=215 Identities=14% Similarity=0.186 Sum_probs=165.2 Q ss_pred CCccEEEEccccCCcCChhhhh-----hCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccc-ccc Q psy13054 874 ENLKVITTFSVGYDHLELHEIK-----ARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQT-HII 947 (1128) Q Consensus 874 ~~LK~I~~~~aGvd~idl~a~~-----~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~-~~~ 947 (1128) +.+++|...++|+|++++.++. ++++.+++.+|. ..+++++.+.+++.+.|++...... ..+.|..... ... T Consensus 80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~av~~ 157 (404) T 1gpj_A 80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAAVEL 157 (404) T ss_dssp HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHHHHH T ss_pred hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHHHHH Confidence 5689999999999999999998 889999999888 5799999999999999988765432 3444531000 000 Q ss_pred CC-cccccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCch-h-hhhcCCcc---cChHhhhccCCEEEEecCC Q psy13054 948 GP-NIMGLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKE-E-GTALGAQL---VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 948 ~~-~~~~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~-~-~~~~g~~~---~~l~ell~~sDvV~l~lPl 1020 (1128) .. ...++.|++|+|||+|.||+.+++.|+++|+ +|+++|++..+. . +...|... .++++++.++|+|+.|+|. T Consensus 158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404) T 1gpj_A 158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA 237 (404) T ss_dssp HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS T ss_pred HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC Confidence 00 0114789999999999999999999999999 999998766553 2 34455543 3677888999999999764 Q ss_pred CcccccccCHHHHcc--CC----CCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEE-- Q psy13054 1021 TKDTEQLIGRKQFSL--MK----PTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVL-- 1092 (1128) Q Consensus 1021 t~~T~~li~~~~l~~--mk----~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvil-- 1092 (1128) +.++++++.++. || ++.++||++ +|.+.+++++++|||.+ T Consensus 238 ---~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d 285 (404) T 1gpj_A 238 ---PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRT 285 (404) T ss_dssp ---SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEE T ss_pred ---CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEe Confidence 456788888887 43 566777765 47666789999999999 Q ss_pred CCCCCCCcHHHHH----------HHHHHHHHHHHHHHcCC Q psy13054 1093 TPHTSSATKAVRD----------EKSSTSAENIIRGYKGE 1122 (1128) Q Consensus 1093 TPHiag~t~e~~~----------~~~~~~~~nl~~~l~G~ 1122 (1128) |||+++.+.+..+ .+....++++..|+.++ T Consensus 286 ~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~ 325 (404) T 1gpj_A 286 IDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKL 325 (404) T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 9999999987765 67777888888887654 |
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
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Probab=99.51 E-value=5e-14 Score=163.61 Aligned_cols=199 Identities=14% Similarity=0.191 Sum_probs=135.8 Q ss_pred HHhhccceeEEeecCC----ChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHH Q psy13054 849 KLLKAFKVSKILYTSR----NKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVS 924 (1128) Q Consensus 849 ~~l~~~~~~~~~~~~i----~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~ 924 (1128) +.+++++++.....++ +++.++.+.+++++|+....+.|+.+++++.++||.+++.... ++.+++..+. +|+.. T Consensus 63 ~~~~~adiil~v~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~~-~~~~~~~~l~-~l~~~ 140 (384) T 1l7d_A 63 QALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMELM-PRISRAQSMD-ILSSQ 140 (384) T ss_dssp HHHSSCSEEEEEECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGGC-CCSGGGGGGC-HHHHH T ss_pred hhhcCCCEEEEecCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEeccc-cccccccccc-hhhHH Confidence 4556677666556666 7888988745799999999999999999999999999984211 1111112222 22222 Q ss_pred hccHHHHHHHHcCCCcccc-ccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc Q psy13054 925 RRFQEGRKCITSGEWALKQ-THIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV 1002 (1128) Q Consensus 925 R~i~~~~~~~~~g~w~~~~-~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~ 1002 (1128) +.+ .....+..+.|.... +...-....++.|++|+|+|+|.||+.+++.++++|++|+++|++..+.+ ..+.|.+.+ T Consensus 141 a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~ 219 (384) T 1l7d_A 141 SNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI 219 (384) T ss_dssp HHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC T ss_pred HHH-HHHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEE Confidence 222 122222222221000 00000011368999999999999999999999999999999998776544 444565433 Q ss_pred ---C---------------------------hHhhhccCCEEEEec--CCCcccccccCHHHHccCCCCcEEEEcC--CC Q psy13054 1003 ---P---------------------------LDTLCAESDFIFVTC--ALTKDTEQLIGRKQFSLMKPTAILVNTS--RG 1048 (1128) Q Consensus 1003 ---~---------------------------l~ell~~sDvV~l~l--Plt~~T~~li~~~~l~~mk~ga~lIN~a--RG 1048 (1128) . ++++++++|+|+.++ |.. .+.++++++.++.||+|+++||++ || T Consensus 220 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~g 298 (384) T 1l7d_A 220 TVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAG 298 (384) T ss_dssp CC-----------------------CCHHHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGT T ss_pred eecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCC Confidence 1 778889999999777 443 356789999999999999999999 77 Q ss_pred ccc Q psy13054 1049 GLL 1051 (1128) Q Consensus 1049 ~lV 1051 (1128) +.+ T Consensus 299 g~~ 301 (384) T 1l7d_A 299 GNC 301 (384) T ss_dssp CSS T ss_pred CCe Confidence 654 |
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
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Probab=99.47 E-value=8.8e-14 Score=161.28 Aligned_cols=143 Identities=17% Similarity=0.215 Sum_probs=106.5 Q ss_pred hhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHH Q psy13054 892 HEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLET 971 (1128) Q Consensus 892 ~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~v 971 (1128) ....+..|+|.|+...-+.+.-+...+ ....+..... +. ....+.||+++|+|+|.||+.+ T Consensus 175 ~~~g~L~~Pvi~vnds~tK~~fDn~yG----t~~s~~~gi~--ra-------------t~~~L~GktV~ViG~G~IGk~v 235 (435) T 3gvp_A 175 SKAGKLCVPAMNVNDSVTKQKFDNLYC----CRESILDGLK--RT-------------TDMMFGGKQVVVCGYGEVGKGC 235 (435) T ss_dssp --CCCCCSCEEECTTCHHHHHHHTHHH----HHHHHHHHHH--HH-------------HCCCCTTCEEEEECCSHHHHHH T ss_pred HHcCCCCCCEEEecchhhhhhhhhhhh----hHHHHHHHHH--Hh-------------hCceecCCEEEEEeeCHHHHHH Confidence 344467899999987555443332222 1111111111 10 1125899999999999999999 Q ss_pred HHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcc Q psy13054 972 AKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 972 A~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) |++|++|||+|+++|..+.+.. +...|++..++++++++||+|++| +.|+++|+++.|+.||+|+++||+|||.+ T Consensus 236 A~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~gailINvgrg~~ 311 (435) T 3gvp_A 236 CAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSCIVCNMGHSNT 311 (435) T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTEEEEECSSTTT T ss_pred HHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCcEEEEecCCCc Confidence 9999999999999986654333 445677778999999999999994 56889999999999999999999999998 Q ss_pred -cCHHHHH Q psy13054 1051 -LDQEALV 1057 (1128) Q Consensus 1051 -Vde~aL~ 1057 (1128) +|.++|. T Consensus 312 EId~~~L~ 319 (435) T 3gvp_A 312 EIDVASLR 319 (435) T ss_dssp TBTGGGGC T ss_pred cCCHHHHH Confidence 7877774 |
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
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Probab=99.30 E-value=6.5e-12 Score=146.56 Aligned_cols=250 Identities=11% Similarity=0.125 Sum_probs=144.5 Q ss_pred ccchhhhhhhhccCCceEEEcCCC--CCCCCHHHHHHh---------cCCceEEEeCCCCCCCHHHHhccCCCceEEEEc Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVS--EGRMPRDIFIEK---------LKGCSALLCNPHQKVDKEVLDRSGENLKVIATF 110 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~--~~~~~~eel~~~---------l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~ 110 (1128) .+.|+...+|.. ..++|.+.... ....+.++..+. +-++|+|+.. ..+ +++.++.+.+++++|+.. T Consensus 24 ~ltP~~v~~L~~-~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~adiil~v-k~p-~~~~i~~l~~~~~li~~~ 100 (401) T 1x13_A 24 AATPKTVEQLLK-LGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKV-NAP-LDDEIALLNPGTTLVSFI 100 (401) T ss_dssp SCCHHHHHHHHH-TTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGSSSEEECS-SCC-CHHHHTTCCTTCEEEECC T ss_pred CCCHHHHHHHHH-CCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhcCCeEEEe-CCC-CHHHHHHhcCCCcEEEEe Confidence 578888888742 45777663211 113456666543 4348988753 344 577788766799999999 Q ss_pred CcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHH--HHHHHhhhhhHHHHhhccCCCCcccccccc Q psy13054 111 SVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQR--HNWIARLSSFAEIQTRALDTKFPAKQQNLH 188 (1128) Q Consensus 111 gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (1128) +.|+|++|++++.++||.|. +.++|+|++.++.|.+.+.+... +..++.+..| .+.|...... T Consensus 101 ~~~~d~~~~~al~~~gI~v~-----~~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~--------~~~~~~~~~~-- 165 (401) T 1x13_A 101 WPAQNPELMQKLAERNVTVM-----AMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHE--------FGRFFTGQIT-- 165 (401) T ss_dssp CGGGCHHHHHHHHHTTCEEE-----EGGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHH--------CSSCSSCEEE-- T ss_pred cCCCCHHHHHHHHHCCCEEE-----EeehhhhhhhhcccchHHHHHHHHHHHHHHHHHHh--------cccccCCcee-- Confidence 99999999999999999996 45677787777644333333221 2223322111 0111110000 Q ss_pred cceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeee Q psy13054 189 NVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEF 268 (1128) Q Consensus 189 ~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ 268 (1128) ..| ...+++++|+|.|. +|..+++.+++++..+. T Consensus 166 ------------~~g-~l~g~~V~ViGaG~---------------------------------iG~~aa~~a~~~Ga~V~ 199 (401) T 1x13_A 166 ------------AAG-KVPPAKVMVIGAGV---------------------------------AGLAAIGAANSLGAIVR 199 (401) T ss_dssp ------------TTE-EECCCEEEEECCSH---------------------------------HHHHHHHHHHHTTCEEE T ss_pred ------------ecc-CcCCCEEEEECCCH---------------------------------HHHHHHHHHHHCCCEEE Confidence 001 13457888888762 45566666665554322 Q ss_pred eeCCCCCCCCcccc-ccCCccccceeeccccc---cccc--ccccCCc-----ccCHHHHhhcCCEEEEe--cCCCcccc Q psy13054 269 FLGPKKNGSQNPKW-RMGSKTDTNHYFGYNWF---ERSN--GTALGAQ-----LVPLDTLCAESDFIFVT--CALTKDTE 335 (1128) Q Consensus 269 ilG~g~iG~~va~~-~~g~~~~~~~~~g~~~~---~~~~--~~~~g~~-----~vsLdeLl~~SDiVslh--~PLT~~T~ 335 (1128) +++.. ....... .+| +.+...+.. .... .+..... ..+++++++.+|+|+.+ +|. ..+. T Consensus 200 v~D~~--~~~~~~~~~lG-----a~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg-~~ap 271 (401) T 1x13_A 200 AFDTR--PEVKEQVQSMG-----AEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPG-KPAP 271 (401) T ss_dssp EECSC--GGGHHHHHHTT-----CEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTT-SCCC T ss_pred EEcCC--HHHHHHHHHcC-----CEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCC-CCCC Confidence 33321 1110000 011 011000000 0000 0000000 01478899999999998 553 3478 Q ss_pred cccCHHHHhcCCCCcEEEEec--CCCccCH Q psy13054 336 QLIGRKQFSLMKPTAILINTS--RGGLLDQ 363 (1128) Q Consensus 336 ~lIn~~~l~~MK~gaiLINta--RG~lVDe 363 (1128) ++|+++.|+.||+|+++||+| ||+.|++ T Consensus 272 ~li~~~~l~~mk~g~vIVdva~~~Gg~v~~ 301 (401) T 1x13_A 272 KLITREMVDSMKAGSVIVDLAAQNGGNCEY 301 (401) T ss_dssp CCBCHHHHHTSCTTCEEEETTGGGTCSBTT T ss_pred eeeCHHHHhcCCCCcEEEEEcCCCCCCcCc Confidence 999999999999999999999 9999886 |
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
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Probab=99.27 E-value=1.7e-13 Score=159.99 Aligned_cols=121 Identities=10% Similarity=0.063 Sum_probs=91.4 Q ss_pred eeCCCCCCCCccccccC-Cccccceeeccc-ccccccccccCCcccCHHHHhhcCCE-EEEecCCCcccccccCHHHHhc Q psy13054 269 FLGPKKNGSQNPKWRMG-SKTDTNHYFGYN-WFERSNGTALGAQLVPLDTLCAESDF-IFVTCALTKDTEQLIGRKQFSL 345 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g-~~~~~~~~~g~~-~~~~~~~~~~g~~~vsLdeLl~~SDi-Vslh~PLT~~T~~lIn~~~l~~ 345 (1128) ++|+|+||+.++++..+ ++ +++++++ +.. ..++.+.+++++|++.+|. .++ +|+ |+|++ |+.+.|.+ T Consensus 217 I~G~G~VG~~vA~~l~~~~G---~kVv~~sD~~g----~~~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~~-i~~~~l~~ 286 (419) T 1gtm_A 217 IQGYGNAGYYLAKIMSEDFG---MKVVAVSDSKG----GIYNPDGLNADEVLKWKNEHGSV-KDF-PGATN-ITNEELLE 286 (419) T ss_dssp EECCSHHHHHHHHHHHHTTC---CEEEEEECSSC----EEEEEEEECHHHHHHHHHHHSSS-TTC-TTSEE-ECHHHHHH T ss_pred EEcCCHHHHHHHHHHHHhcC---CEEEEEeCCCc----cccCccCCCHHHHHHHHHhcCEe-ecC-ccCee-eCHHHHHh Confidence 55666666666654333 32 2344442 211 1122345689999887765 444 788 78999 89999999 Q ss_pred CCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCC-CCcccCCCCCCCCcccccccC Q psy13054 346 MKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD-HPLVQLDNCGGAGLDVMIPEP 412 (1128) Q Consensus 346 MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~-~pL~~lpNvg~~~~~v~tph~ 412 (1128) ||+ .+|||+|||.+||+++ +++|++|+|++++ +||++++ +||+.++|| +++||+ T Consensus 287 mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V------~itPhi 341 (419) T 1gtm_A 287 LEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGI------LQIPDF 341 (419) T ss_dssp SCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTC------EEECHH T ss_pred CCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCE------EEECch Confidence 998 5999999999999999 6999999999998 8998754 799999999 999999 |
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
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Probab=99.23 E-value=3.5e-11 Score=138.91 Aligned_cols=261 Identities=11% Similarity=0.142 Sum_probs=141.9 Q ss_pred ccchhhhhhhhccCCceEEEcCCC--CCCCCHHHHHH----------hcCCceEEEeCCCCCCCHHHHhccCCCceEEEE Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVS--EGRMPRDIFIE----------KLKGCSALLCNPHQKVDKEVLDRSGENLKVIAT 109 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~--~~~~~~eel~~----------~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~ 109 (1128) .+.|+...+|.. ..++|.+-+.. ....+.+++.+ .. ++|+|+. ...++.++ ++.+.++.++|+. T Consensus 17 ~l~P~~v~~L~~-~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~-vk~p~~~~-~~~l~~~~~~~~~ 92 (369) T 2eez_A 17 ALTPGGVESLVR-RGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVK-VKEPLPEE-YGFLREGLILFTY 92 (369) T ss_dssp SSCHHHHHHHHH-TTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEEC-SSCCCGGG-GGGCCTTCEEEEC T ss_pred CcCHHHHHHHHh-CCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEE-ECCCCHHH-HhhcCCCcEEEEE Confidence 688999888853 46888663221 02345666664 45 8998874 45666555 6666678999999 Q ss_pred cCcccccccHHHHHhCCcEEE---ecCCC-------CchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCC Q psy13054 110 FSVGHDHLHLDEIKSRGIRVG---TVGPV-------SSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTK 179 (1128) Q Consensus 110 ~gvG~DnIDl~aa~erGI~V~---n~pg~-------~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1128) ...++|+.+++++.++||++. +.|.. ++.+.++.-++.++++ +.+..... + ++. T Consensus 93 ~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~-~~l~~~~~----g-----------~~~ 156 (369) T 2eez_A 93 LHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGA-QFLEKPKG----G-----------RGV 156 (369) T ss_dssp CCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHH-HHTSGGGT----S-----------CCC T ss_pred ecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHH-HHHHHhcC----C-----------Cce Confidence 999999999999999999998 44432 3333333322444333 22221100 0 000 Q ss_pred CcccccccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhh Q psy13054 180 FPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNS 259 (1128) Q Consensus 180 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~ 259 (1128) |. .+ . ....+++++|+|.|. +|+.+++. T Consensus 157 ~~------~~-----------~--~~l~~~~V~ViGaG~---------------------------------iG~~~a~~ 184 (369) T 2eez_A 157 LL------GG-----------V--PGVAPASVVILGGGT---------------------------------VGTNAAKI 184 (369) T ss_dssp CT------TC-----------B--TBBCCCEEEEECCSH---------------------------------HHHHHHHH T ss_pred ec------CC-----------C--CCCCCCEEEEECCCH---------------------------------HHHHHHHH Confidence 10 00 0 012346777777642 56667777 Q ss_pred ccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCC-------cccCHHHHhhcCCEEEEecCCCc Q psy13054 260 LKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGA-------QLVPLDTLCAESDFIFVTCALTK 332 (1128) Q Consensus 260 l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~-------~~vsLdeLl~~SDiVslh~PLT~ 332 (1128) +++++..+.+++.. ...... ..+.++. ...+++++++.+|+|+.++|.+. T Consensus 185 l~~~Ga~V~~~d~~--~~~~~~---------------------~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~ 241 (369) T 2eez_A 185 ALGMGAQVTILDVN--HKRLQY---------------------LDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG 241 (369) T ss_dssp HHHTTCEEEEEESC--HHHHHH---------------------HHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC--- T ss_pred HHhCCCEEEEEECC--HHHHHH---------------------HHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc Confidence 66655432222210 000000 0001111 12368889999999999999876 Q ss_pred -ccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCCCCcccCCCC---CCCCcccc Q psy13054 333 -DTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC---GGAGLDVM 408 (1128) Q Consensus 333 -~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~~pL~~lpNv---g~~~~~v~ 408 (1128) .|.++++++.++.||+|+++||+| + ..| |+ +||+ ||.+.++|++..+|+ |...+-.. T Consensus 242 ~~~~~li~~~~l~~mk~gg~iV~v~----~---------~~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~ 302 (369) T 2eez_A 242 AKAPKLVTRDMLSLMKEGAVIVDVA----V---------DQG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGA 302 (369) T ss_dssp ----CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGG T ss_pred cccchhHHHHHHHhhcCCCEEEEEe----c---------CCC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchh Confidence 789999999999999999999998 1 122 44 9998 777778899998887 22222226 Q ss_pred cccCCCCC Q psy13054 409 IPEPLPAD 416 (1128) Q Consensus 409 tph~~~~t 416 (1128) +||.++.. T Consensus 303 ~p~~as~~ 310 (369) T 2eez_A 303 VPRTSTFA 310 (369) T ss_dssp SHHHHHHH T ss_pred cHHHHHHH Confidence 67766543 |
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
---|
Probab=99.22 E-value=1.3e-11 Score=143.48 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=55.5 Q ss_pred cccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc-cCHHHHHHH Q psy13054 305 TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL-LDQEALVEF 369 (1128) Q Consensus 305 ~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l-VDe~AL~~A 369 (1128) ...|+++++++|++++||||++ ++.|+++|+++.|++||+|++|||+|||.+ ||.++|.+. T Consensus 251 ~~~G~~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~ 312 (436) T 3h9u_A 251 AMEGYQVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN 312 (436) T ss_dssp HHTTCEECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH T ss_pred HHhCCeecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh Confidence 3457788899999999999996 678999999999999999999999999997 999999764 |
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
---|
Probab=99.16 E-value=3.2e-11 Score=140.07 Aligned_cols=59 Identities=22% Similarity=0.260 Sum_probs=53.8 Q ss_pred ccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc-cCHHHHHH Q psy13054 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL-LDQEALVE 368 (1128) Q Consensus 306 ~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l-VDe~AL~~ 368 (1128) ..|+++++++|++++||||+++ +.|+|+||++.|++||+|++|||+|||.+ ||+++|.+ T Consensus 288 ~~G~~vv~LeElL~~ADIVv~a----tgt~~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~ 347 (464) T 3n58_A 288 MDGFEVVTLDDAASTADIVVTT----TGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN 347 (464) T ss_dssp HTTCEECCHHHHGGGCSEEEEC----CSSSSSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT T ss_pred hcCceeccHHHHHhhCCEEEEC----CCCccccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh Confidence 4577888999999999999985 36899999999999999999999999999 99999974 |
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
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Probab=99.15 E-value=1.7e-10 Score=133.93 Aligned_cols=248 Identities=11% Similarity=0.124 Sum_probs=141.6 Q ss_pred ccchhhhhhhhccCCceEEEcCCCC--CCCCHHHHH-----------HhcCCceEEEeCCCCCC----CHHHHhccCCCc Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSE--GRMPRDIFI-----------EKLKGCSALLCNPHQKV----DKEVLDRSGENL 104 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~--~~~~~eel~-----------~~l~~adaIi~~~~~~i----~~evL~~~~~~L 104 (1128) .|.|+...+|.. ..++|.+-+... ...+.++.. +.++++|+|+.. ..++ +++.++.+++++ T Consensus 17 ~l~P~~v~~L~~-~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v-~~p~~~~~~~~~i~~l~~~~ 94 (384) T 1l7d_A 17 AISPEVVKKLVG-LGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKV-QRPMTAEEGTDEVALIKEGA 94 (384) T ss_dssp SCCHHHHHHHHH-TTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEE-ECCCCGGGSCCGGGGSCTTC T ss_pred CCCHHHHHHHHh-CCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEe-cCcccccCCHHHHHhhccCC Confidence 688888888853 467776633210 134555655 456889998864 4566 788899886689 Q ss_pred eEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccc Q psy13054 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQ 184 (1128) Q Consensus 105 K~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (1128) ++|+....+.|+.|++++.++||.+++. ...++.+++..+. +|+..+.+. .+..+..+ .|. . ++|.. T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~a-g~~av~~~-~~~------~-~~~~~-- 161 (384) T 1l7d_A 95 VLMCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNLA-GYRAVIDG-AYE------F-ARAFP-- 161 (384) T ss_dssp EEEEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHHH-HHHHHHHH-HHH------C-SSCSS-- T ss_pred EEEEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHHH-HHHHHHHH-HHH------h-hhccc-- Confidence 9999999999999999999999999984 3333333334444 333333332 11112211 110 0 11110 Q ss_pred cccccceEeecCccccccccccccceeeeeeccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCc Q psy13054 185 QNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSD 264 (1128) Q Consensus 185 ~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~ 264 (1128) ..+ .+. ....+++++|+|.|. +|..+++.+++++ T Consensus 162 ~~~-------~~~------~~l~g~~V~ViGaG~---------------------------------iG~~aa~~a~~~G 195 (384) T 1l7d_A 162 MMM-------TAA------GTVPPARVLVFGVGV---------------------------------AGLQAIATAKRLG 195 (384) T ss_dssp CEE-------ETT------EEECCCEEEEECCSH---------------------------------HHHHHHHHHHHTT T ss_pred chh-------ccC------CCCCCCEEEEECCCH---------------------------------HHHHHHHHHHHCC Confidence 000 000 012467888888762 4556666666665 Q ss_pred eeeeeeCCCCCCCCccccccCCccccceeeccccc---ccc---cccccCC-----------cccCHHHHhhcCCEEEEe Q psy13054 265 IFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWF---ERS---NGTALGA-----------QLVPLDTLCAESDFIFVT 327 (1128) Q Consensus 265 ~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~---~~~---~~~~~g~-----------~~vsLdeLl~~SDiVslh 327 (1128) +.+.+++.. ....... ..+|.+.. ..+ ....-|+ ....++++++.+|+|+.+ T Consensus 196 a~V~~~d~~--~~~~~~~---------~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~ 264 (384) T 1l7d_A 196 AVVMATDVR--AATKEQV---------ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITT 264 (384) T ss_dssp CEEEEECSC--STTHHHH---------HHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEEEC T ss_pred CEEEEEeCC--HHHHHHH---------HHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEEC Confidence 433333321 1110000 00111110 000 0000000 011288899999999955 Q ss_pred cCCCc--ccccccCHHHHhcCCCCcEEEEec--CCCccC Q psy13054 328 CALTK--DTEQLIGRKQFSLMKPTAILINTS--RGGLLD 362 (1128) Q Consensus 328 ~PLT~--~T~~lIn~~~l~~MK~gaiLINta--RG~lVD 362 (1128) + +.| .+.++|+++.++.||||+++||+| ||+.++ T Consensus 265 ~-~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~ 302 (384) T 1l7d_A 265 A-LIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP 302 (384) T ss_dssp C-CCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSST T ss_pred C-ccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCee Confidence 5 444 357899999999999999999999 988664 |
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
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Probab=99.06 E-value=2.7e-10 Score=130.22 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=93.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhc-cCCEEEEecCCCcccccccCH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCA-ESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~-~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ++.||||+|+|+|+||+.+|++|++|||+|+++|.+..+.+ ....++++++.++++. +|||++. ..|.++|+. T Consensus 172 ~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP-----~A~~~~I~~ 246 (355) T 1c1d_A 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAP-----CAMGGVITT 246 (355) T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEE-----CSCSCCBCH T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecH-----hHHHhhcCH Confidence 58999999999999999999999999999998886644322 3456777888999988 9999984 368899999 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) +.++.|| ..++||.+|+.+.+++| .++|+++.+..+ T Consensus 247 ~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIlv~ 282 (355) T 1c1d_A 247 EVARTLD-CSVVAGAANNVIADEAA-SDILHARGILYA 282 (355) T ss_dssp HHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCEEC T ss_pred HHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEEEE Confidence 9999998 78999999999999888 699999887554 |
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
---|
Probab=98.98 E-value=1.8e-09 Score=119.38 Aligned_cols=145 Identities=18% Similarity=0.159 Sum_probs=106.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh-hhhcCCc---ccChHhhhc-cCCEEEEecCCCcccccccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE-GTALGAQ---LVPLDTLCA-ESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~-~~~~g~~---~~~l~ell~-~sDvV~l~lPlt~~T~~li~ 1029 (1128) ++|||||+|.||+.+|+.|...|+ +|++||++..+.+ ..+.|+. ..+++++++ ++|+|++++|.. .+..++. T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~ 80 (281) T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK 80 (281) T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH Confidence 579999999999999999999998 9999987655443 4445653 237889999 999999999954 5666664 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC---CCCCCCccccCCCeEECCCCCCCcHHHHHH Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE---PLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E---Pl~~~~pL~~~pNvilTPHiag~t~e~~~~ 1106 (1128) +....+++++++++++++.....+.+.+.+.++-+.+ .-++..| |..+.++++.-++++++||.++. .+..+. T Consensus 81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~~~~ 156 (281) T 2g5c_A 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKRLKL 156 (281) T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHHHHH T ss_pred -HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHHHHH Confidence 4566789999999999988766788888887642211 2234333 33445577888889999997654 344433 |
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
---|
Probab=98.96 E-value=6.6e-10 Score=125.73 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=97.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ....++|||||+|.||+.+|+.|...|++|++||++..+.+ ..+.|+... ++++++++||+|++++|..+.++.++.. T Consensus 28 ~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~ 107 (320) T 4dll_A 28 DPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA 107 (320) T ss_dssp -CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT T ss_pred ccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc Confidence 34567999999999999999999999999999987765544 444566654 8999999999999999987788877753 Q ss_pred -HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1031 -KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1031 -~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) +.++.++++.++||++++.+.+.+.+.+.+++..+... T Consensus 108 ~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~ 146 (320) T 4dll_A 108 QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHL 146 (320) T ss_dssp TCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE T ss_pred hhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEE Confidence 57778999999999999999999999999988766543 |
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
---|
Probab=98.94 E-value=6.2e-10 Score=125.02 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=98.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC--HHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 1032 (1128) |+||+||+|.||.++|++|..-|.+|.+||++..+.+ ..+.|.+.. ++.|+++.||+|++|+|..+..+.++. ... T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~ 83 (300) T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 83 (300) T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh Confidence 5899999999999999999999999999997766655 556677765 899999999999999999999888773 347 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128) ++.+++|.++|+++....-+...+.+.+++..+.. +|. T Consensus 84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~--lDa 121 (300) T 3obb_A 84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAM--LDA 121 (300) T ss_dssp TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEE--EEC T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE--Eec Confidence 88999999999999999999999999999887654 563 |
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
---|
Probab=98.94 E-value=9.9e-10 Score=123.19 Aligned_cols=112 Identities=19% Similarity=0.188 Sum_probs=95.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128) ++||+||+|.||.++|++|...|.+|++||++..+.+ ..+.|...+ ++.|++++||+|++|+|..+..+.++....+. T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~ 85 (297) T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE 85 (297) T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh Confidence 5799999999999999999999999999998777655 556677665 89999999999999999888888888888999 Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1035 ~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) .++++.++|+++....-+.+.+.+.+++..+... T Consensus 86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l 119 (297) T 4gbj_A 86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYV 119 (297) T ss_dssp HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE T ss_pred hcCCCeEEEECCCCChHHHHHHHHHHHhcCCcee Confidence 9999999999999999999999999998877553 |
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
---|
Probab=98.92 E-value=4.9e-09 Score=118.47 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=107.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh-hhhcCCc---ccChHh-hhccCCEEEEecCCCcccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE-GTALGAQ---LVPLDT-LCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~-~~~~g~~---~~~l~e-ll~~sDvV~l~lPlt~~T~ 1025 (1128) ++..++|||||+|.||+.+|+.|+..|+ +|++||++....+ +.+.|+. ..++++ ++++||+|++++|.. .+. T Consensus 30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~~~ 108 (314) T 3ggo_A 30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFR 108 (314) T ss_dssp CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-GHH T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-HHH Confidence 4556899999999999999999999999 9999987665443 4455652 247888 899999999999955 455 Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC---CCCCCCccccCCCeEECCCCCCCcHH Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE---PLPADHPLVQLDNCVLTPHTSSATKA 1102 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E---Pl~~~~pL~~~pNvilTPHiag~t~e 1102 (1128) .++ ++....+++++++++++.......+++.+.+.. +.-+. -=++-.| |..+...|+.-..+++||+-+ .+.+ T Consensus 109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~-~~~~ 184 (314) T 3ggo_A 109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEGKKVILTPTKK-TDKK 184 (314) T ss_dssp HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTTCEEEECCCTT-SCHH T ss_pred HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcCCEEEEEeCCC-CCHH Confidence 555 466677999999999988776556677777755 22221 1223222 223445677888899999843 4455 Q ss_pred HHHHHH Q psy13054 1103 VRDEKS 1108 (1128) Q Consensus 1103 ~~~~~~ 1108 (1128) ..+++. T Consensus 185 ~~~~v~ 190 (314) T 3ggo_A 185 RLKLVK 190 (314) T ss_dssp HHHHHH T ss_pred HHHHHH Confidence 554433 |
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
---|
Probab=98.92 E-value=9e-10 Score=123.85 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=96.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ++..++|||||+|.||+.+|+.|...|++|++||++..+.+ ..+.|.... ++++++++||+|++++|....++.++++ T Consensus 6 ~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~ 85 (306) T 3l6d_A 6 ESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGM 85 (306) T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTS T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcc Confidence 34568999999999999999999999999999987665544 444566554 8999999999999999988778888864 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +.+..+++|.++||+++....+.+.+.+.+++..+.. T Consensus 86 ~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~ 122 (306) T 3l6d_A 86 PGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHY 122 (306) T ss_dssp TTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEE T ss_pred cchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeE Confidence 4567789999999999999999999999998766544 |
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
---|
Probab=98.91 E-value=1.3e-09 Score=126.59 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=52.4 Q ss_pred ccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCc-cCHHHHH Q psy13054 306 ALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGL-LDQEALV 367 (1128) Q Consensus 306 ~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~l-VDe~AL~ 367 (1128) ..|++.++++|++++||||+++ +.|+++|+++.|++||+|++|||+|||.. ||.++|. T Consensus 261 ~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~gailINvgrg~~EId~~~L~ 319 (435) T 3gvp_A 261 MDGFRLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR 319 (435) T ss_dssp HTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC T ss_pred HcCCEeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCcEEEEecCCCccCCHHHHH Confidence 4567778999999999999993 68999999999999999999999999998 8888874 |
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
---|
Probab=98.88 E-value=2.3e-09 Score=119.93 Aligned_cols=111 Identities=21% Similarity=0.253 Sum_probs=95.8 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) .++|||||+|.||+.+|+.|...|.+|++||++..+.+ ..+.|+... +++++++ ||+|++++|..+.++.++ .+.+ T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~ 92 (296) T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA 92 (296) T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH Confidence 36899999999999999999999999999998777654 455677654 8999999 999999999887888887 6788 Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ..++++.++||+++....+.+.+.+.+++..+... T Consensus 93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~ 127 (296) T 3qha_A 93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIHIV 127 (296) T ss_dssp TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEE T ss_pred HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEE Confidence 88999999999999999999999999987655443 |
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
---|
Probab=98.86 E-value=3.1e-08 Score=114.87 Aligned_cols=100 Identities=22% Similarity=0.358 Sum_probs=82.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc------------------------------ Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL------------------------------ 1001 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~------------------------------ 1001 (1128) .+.+.+|+|+|+|.||..+|+.++++|++|++||.+..+.+ ..+.|.++ T Consensus 187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~ 266 (405) T 4dio_A 187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA 266 (405) T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH Confidence 67899999999999999999999999999999998877644 44445432 Q ss_pred cChHhhhccCCEEEEec--CCCcccccccCHHHHccCCCCcEEEEcC--CCcccCH Q psy13054 1002 VPLDTLCAESDFIFVTC--ALTKDTEQLIGRKQFSLMKPTAILVNTS--RGGLLDQ 1053 (1128) Q Consensus 1002 ~~l~ell~~sDvV~l~l--Plt~~T~~li~~~~l~~mk~ga~lIN~a--RG~lVde 1053 (1128) .++++++++||+|+.++ |.. .+.++++++.++.||||+++||+| +|+.+.. T Consensus 267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~ 321 (405) T 4dio_A 267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG 321 (405) T ss_dssp HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT T ss_pred hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc Confidence 15788999999999874 543 467899999999999999999998 7776543 |
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
---|
Probab=98.86 E-value=2.7e-09 Score=120.11 Aligned_cols=115 Identities=12% Similarity=0.057 Sum_probs=96.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCccccccc-- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI-- 1028 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li-- 1028 (1128) ...-++|||||+|.||+.+|+.|...|++|++||++..+.+ ..+.|+... ++++++++||+|++|+|....++.++ T Consensus 18 ~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~ 97 (310) T 3doj_A 18 GSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFD 97 (310) T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHS T ss_pred cccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhC Confidence 44557899999999999999999999999999997766554 455676654 89999999999999999877887776 Q ss_pred CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1029 ~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) ..+.+..++++.++||+++..+...+.+.+.+++..+.. T Consensus 98 ~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~ 136 (310) T 3doj_A 98 KGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRF 136 (310) T ss_dssp TTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE T ss_pred chhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE Confidence 346678899999999999999999999999988765543 |
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
---|
Probab=98.84 E-value=5e-09 Score=120.53 Aligned_cols=175 Identities=16% Similarity=0.185 Sum_probs=112.4 Q ss_pred CChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCC----h------hHHHHHHHHHHHHHHhccHHHHHH Q psy13054 864 RNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHIS----S------DTVAEYNIGLAIAVSRRFQEGRKC 933 (1128) Q Consensus 864 i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~----a------~sVAE~alaliL~~~R~i~~~~~~ 933 (1128) .+.+.++.+.++-.++.......|.=-++++.++||....--... + .++||.+=.+.. ....+ T Consensus 94 p~~~e~~~l~~g~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av------~~aa~- 166 (381) T 3p2y_A 94 PTSDEISQLKPGSVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAV------LLGAS- 166 (381) T ss_dssp CCHHHHTTSCTTCEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHH------HHHHH- T ss_pred CChhHHhhccCCCEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHH------HHHHH- Confidence 444555554355555655544444444677888898876632221 1 233443321111 11111 Q ss_pred HHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc---------- Q psy13054 934 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV---------- 1002 (1128) Q Consensus 934 ~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~---------- 1002 (1128) .-++.. . ..-.....+.+++|+|||+|.||..+|+.++++|++|+++|++..+.+ ..+.|.++. T Consensus 167 -~l~~~~---~-~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~ 241 (381) T 3p2y_A 167 -LSTRFV---P-MLTTAAGTVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEG 241 (381) T ss_dssp -HCSSCS---S-CEECSSCEECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC------- T ss_pred -Hhhhhh---h-hhhcccCCcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccc Confidence 111110 0 000112267999999999999999999999999999999998876654 444555432 Q ss_pred ----------------ChHhhhccCCEEEEec--CCCcccccccCHHHHccCCCCcEEEEcC--CCccc Q psy13054 1003 ----------------PLDTLCAESDFIFVTC--ALTKDTEQLIGRKQFSLMKPTAILVNTS--RGGLL 1051 (1128) Q Consensus 1003 ----------------~l~ell~~sDvV~l~l--Plt~~T~~li~~~~l~~mk~ga~lIN~a--RG~lV 1051 (1128) +++++++++|+|+.++ |. ..+.++|+++.++.||||+++||+| +|+.+ T Consensus 242 gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~ 309 (381) T 3p2y_A 242 GYARELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNC 309 (381) T ss_dssp ------CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB T ss_pred cchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCcc Confidence 4678999999999875 54 3467799999999999999999997 55544 |
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
---|
Probab=98.84 E-value=3.3e-09 Score=117.87 Aligned_cols=111 Identities=19% Similarity=0.113 Sum_probs=94.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCccccccc--CHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI--GRKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li--~~~~ 1032 (1128) ++|||||+|.||+.+|+.|...|++|++||++..+.+ ..+.|+... ++++++++||+|++|+|....++.++ +++. T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287) T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH Confidence 6899999999999999999999999999987766554 445566654 89999999999999999877888777 2467 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +..++++.++||+++....+.+.+.+.+++..+.. T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~ 116 (287) T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRF 116 (287) T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEE Confidence 78899999999999999999999999998765544 |
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
---|
Probab=98.84 E-value=5e-09 Score=120.44 Aligned_cols=120 Identities=12% Similarity=0.255 Sum_probs=100.5 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccC---CEEEEecCCCccccccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAES---DFIFVTCALTKDTEQLI 1028 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~s---DvV~l~lPlt~~T~~li 1028 (1128) +.+++|||||+|.||+.+|+.|...|.+|.+||++..+.+ ..+.|+... +++++++.+ |+|++++|.. .++.++ T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl 98 (358) T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML 98 (358) T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH Confidence 4678999999999999999999999999999987665544 445566654 899999999 9999999977 888877 Q ss_pred CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 1029 ~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) .+.+..++++.++|+++++...+...+.+.+++..+......|+-. T Consensus 99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg 144 (358) T 4e21_A 99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG 144 (358) T ss_dssp -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG T ss_pred -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC Confidence 5678889999999999999999999999999988877655555543 |
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
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Probab=98.82 E-value=8.2e-09 Score=116.70 Aligned_cols=118 Identities=14% Similarity=0.034 Sum_probs=93.8 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCC-------chh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRV-------KEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~-------~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .++|||||+|.||..+|+.|...| .+|++||++.. ..+ ..+.|+ .. ++++++++||+|++++|...... T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~~e~~~~aDvVi~avp~~~~~~ 102 (317) T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDDVAGIACADVVLSLVVGAATKA 102 (317) T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESSGGGGGGCSEEEECCCGGGHHH T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCHHHHHhcCCEEEEecCCHHHHH Confidence 368999999999999999999999 99999987652 111 234466 56 89999999999999999776665 Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 1076 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E 1076 (1128) .+ .+....++++.++||+++......+.+.+.+++..+....--|+-++ T Consensus 103 ~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~ 151 (317) T 4ezb_A 103 VA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV 151 (317) T ss_dssp HH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS T ss_pred HH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc Confidence 44 67788899999999999999999999999998765544322345433 |
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
---|
Probab=98.81 E-value=3.1e-09 Score=118.04 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=93.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCccccccc--CHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI--GRKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li--~~~~ 1032 (1128) ++|||||+|.||+.+|+.|...|.+|.+||++..+.+ ..+.|+... ++++++++||+|++++|..+.++.++ ..+. T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287) T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287) T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh Confidence 4799999999999999999999999999997766554 445566654 89999999999999999877887776 2456 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +..++++.++||++++...+.+.+.+.+++..+.. T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~ 116 (287) T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRF 116 (287) T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEE Confidence 78899999999999999999999999988765543 |
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
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Probab=98.81 E-value=8.9e-09 Score=121.58 Aligned_cols=93 Identities=23% Similarity=0.296 Sum_probs=80.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .+.||+++|+|+|.||+.+|++|+++|++|+++|+...+.. +...++...+++++++.+|+|+.+ ..+.++++.+ T Consensus 262 ~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~a----tG~~~vl~~e 337 (488) T 3ond_A 262 MIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTT----TGNKDIIMLD 337 (488) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEEC----SSCSCSBCHH T ss_pred cccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeC----CCChhhhhHH Confidence 48999999999999999999999999999999987654433 445677777899999999999964 3467899999 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) .|+.||++++++|+||+. T Consensus 338 ~l~~mk~gaiVvNaG~~~ 355 (488) T 3ond_A 338 HMKKMKNNAIVCNIGHFD 355 (488) T ss_dssp HHTTSCTTEEEEESSSTT T ss_pred HHHhcCCCeEEEEcCCCC Confidence 999999999999999983 |
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
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Probab=98.80 E-value=1.7e-08 Score=112.07 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=102.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc-----------C--------------Cc-ccChHhhhc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL-----------G--------------AQ-LVPLDTLCA 1009 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~-----------g--------------~~-~~~l~ell~ 1009 (1128) ++|||||+|.||..+|+.+...|++|++||++....+ ..+. + +. ..+++++++ T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (283) T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK 84 (283) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc Confidence 6899999999999999999999999999987655433 2111 1 12 247888999 Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCC Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDN 1089 (1128) Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pN 1089 (1128) +||+|+.++|.+.+.+.-+-++..+.+++++++++.+.+ +...++.+++... -...++..+. |.+..+. T Consensus 85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~--------p~~~~~l 153 (283) T 4e12_A 85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN--------HVWVNNT 153 (283) T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS--------STTTSCE T ss_pred cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC--------CcccCce Confidence 999999999988777776666788889999999955444 3567888887543 3455566552 4567788 Q ss_pred eEECCCCCCCcHHHHHHH Q psy13054 1090 CVLTPHTSSATKAVRDEK 1107 (1128) Q Consensus 1090 vilTPHiag~t~e~~~~~ 1107 (1128) +.++||- ..+.+..+.. T Consensus 154 vevv~~~-~t~~~~~~~~ 170 (283) T 4e12_A 154 AEVMGTT-KTDPEVYQQV 170 (283) T ss_dssp EEEEECT-TSCHHHHHHH T ss_pred EEEEeCC-CCCHHHHHHH Confidence 8999983 3344544433 |
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
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Probab=98.79 E-value=1.5e-08 Score=111.34 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=115.8 Q ss_pred ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCc Q psy13054 861 YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWA 940 (1128) Q Consensus 861 ~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~ 940 (1128) +.++.++++..+ ++|+-++....|+|.++. +.| +..|+|++. .+++.++.|. + T Consensus 60 t~P~k~~i~~~~-~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~-----~g~~~~l~~~----------~--- 112 (263) T 2d5c_A 60 TLPLKEAALAHL-DWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA-----PGFLEALKAG----------G--- 112 (263) T ss_dssp CTTCTTGGGGGC-SEECHHHHHHTCCCEEEE----ETT----EEEEECCHH-----HHHHHHHHHT----------T--- T ss_pred cccCHHHHHHHH-HHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH-----HHHHHHHHHh----------C--- Confidence 457888888886 888888899999999876 344 223556544 2444444321 1 Q ss_pred cccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEec Q psy13054 941 LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 941 ~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~l 1018 (1128) .++.| +++|||+|.+|+.+++.|...|++|.++|++..+.. ....+....+++++ +++|+|++++ T Consensus 113 -----------~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~t 179 (263) T 2d5c_A 113 -----------IPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNAT 179 (263) T ss_dssp -----------CCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECS T ss_pred -----------CCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEcc Confidence 13788 999999999999999999999999999987654433 23345444578888 9999999999 Q ss_pred CCC--cccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc Q psy13054 1019 ALT--KDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1019 Plt--~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128) |.. +++...++ .+.+++|+++++++.+. .++ .|.+++++..+ T Consensus 180 p~~~~~~~~~~l~---~~~l~~g~~viD~~~~p-~~t-~l~~~a~~~g~ 223 (263) T 2d5c_A 180 RVGLEDPSASPLP---AELFPEEGAAVDLVYRP-LWT-RFLREAKAKGL 223 (263) T ss_dssp STTTTCTTCCSSC---GGGSCSSSEEEESCCSS-SSC-HHHHHHHHTTC T ss_pred CCCCCCCCCCCCC---HHHcCCCCEEEEeecCC-ccc-HHHHHHHHCcC Confidence 977 33434554 56789999999999874 344 47777766443 |
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
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Probab=98.78 E-value=1.2e-08 Score=115.09 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=88.2 Q ss_pred HHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC--Cchh-hhhcCCccc-ChH Q psy13054 931 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR--VKEE-GTALGAQLV-PLD 1005 (1128) Q Consensus 931 ~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~--~~~~-~~~~g~~~~-~l~ 1005 (1128) ++.++.+.|.+.+. .+..+....++|||||+|.||..+|+.|...|. +|++||++. ...+ ..+.|+... ++. T Consensus 2 ~~~~~~~~~~~~~~---~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~ 78 (312) T 3qsg_A 2 HHHHHHSSGVDLGT---ENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVA 78 (312) T ss_dssp --------------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHH T ss_pred CcccccccccccCc---ccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHH Confidence 34456666753211 112224456799999999999999999999999 999998753 2222 445676654 899 Q ss_pred hhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1006 TLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1006 ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) +++++||+|++++|...... .+ .+....++++.++||++........++.+.+.+. T Consensus 79 e~~~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~ 134 (312) T 3qsg_A 79 EVAGECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH 134 (312) T ss_dssp HHHHHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH T ss_pred HHHhcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh Confidence 99999999999999776554 33 5677889999999999999999999999998875 |
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
---|
Probab=98.77 E-value=4.6e-09 Score=117.77 Aligned_cols=112 Identities=20% Similarity=0.152 Sum_probs=93.4 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc--cChHhhhccCCEEEEecCCCcccccccC--H Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL--VPLDTLCAESDFIFVTCALTKDTEQLIG--R 1030 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~--~~l~ell~~sDvV~l~lPlt~~T~~li~--~ 1030 (1128) .++|||||+|.||..+|+.|...|.+|++||++..+.+ ..+.|... .++++++++||+|++++|..+.++.++. + T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~ 86 (303) T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED 86 (303) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh Confidence 46899999999999999999999999999987665544 44456654 4899999999999999998777777762 4 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +.+..++++.++||+++......+.+.+.+++..+.. T Consensus 87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~ 123 (303) T 3g0o_A 87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNM 123 (303) T ss_dssp CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEE T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeE Confidence 5677899999999999999999999999998765543 |
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
---|
Probab=98.75 E-value=1.5e-09 Score=123.81 Aligned_cols=136 Identities=19% Similarity=0.159 Sum_probs=97.8 Q ss_pred cccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCch-h-hhhcCCcccChHhhhccCCEEEEecCCCcccccccC Q psy13054 952 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE-E-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 952 ~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~-~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) ..+.+++|||||+|.||+.+|+.|+..|++|++++++..+. . +.+.|+...++++++++||+|++++|... ...++. T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~-~~~v~~ 90 (338) T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEF-QGRLYK 90 (338) T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHH-HHHHHH T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHH-HHHHHH Confidence 36889999999999999999999999999999998776542 2 44567765689999999999999999554 366665 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCc---ccc---CCCeEECCCCC Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP---LVQ---LDNCVLTPHTS 1097 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~p---L~~---~pNvilTPHia 1097 (1128) ++....|++++++|.++ | +.. ....+. ...++||+...|..+.++ ++. -.++++|||.. T Consensus 91 ~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~ 155 (338) T 1np3_A 91 EEIEPNLKKGATLAFAH-G--FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQD 155 (338) T ss_dssp HHTGGGCCTTCEEEESC-C--HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEEC T ss_pred HHHHhhCCCCCEEEEcC-C--chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCC Confidence 45667899999999874 2 222 122111 122356666667544443 333 56788999964 |
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
---|
Probab=98.74 E-value=1.5e-08 Score=112.55 Aligned_cols=140 Identities=20% Similarity=0.217 Sum_probs=100.5 Q ss_pred CCeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCCCchh-hhhcCCc---ccChHhhhccCCEEEEecCCCcccccccC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEE-GTALGAQ---LVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~~~~~-~~~~g~~---~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) -++|||||+|.||+.+|+.|... |.+|++||++..+.. ..+.|.. ..+++++++++|+|++++|... .+.++. T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~~ 84 (290) T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFIK 84 (290) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHHH T ss_pred cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHHH Confidence 36899999999999999999866 789999987654433 3345552 2478889999999999999543 355663 Q ss_pred HHHHcc-CCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEe---ccCC---CCCCCCCccccCCCeEECCCCCCC Q psy13054 1030 RKQFSL-MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLD---VMIP---EPLPADHPLVQLDNCVLTPHTSSA 1099 (1128) Q Consensus 1030 ~~~l~~-mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLD---V~e~---EPl~~~~pL~~~pNvilTPHiag~ 1099 (1128) +.... +++++++|++++......+.+.+.+.+..+.. ++ ++-. .|......++.-++++++||.++. T Consensus 85 -~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~--v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~ 158 (290) T 3b1f_A 85 -ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQF--VGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTK 158 (290) T ss_dssp -HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEE--EEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCC T ss_pred -HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEE--EEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCC Confidence 35566 89999999999988766788888887522222 23 2211 344445577787889999997654 |
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
---|
Probab=98.65 E-value=3e-08 Score=111.04 Aligned_cols=137 Identities=16% Similarity=0.128 Sum_probs=90.6 Q ss_pred HHHHHHHcCCCccccccccCCcccccCCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhh Q psy13054 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTL 1007 (1128) Q Consensus 929 ~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~el 1007 (1128) ++..++++..|.. ..+ ..++||||| +|.||..+|+.|+..|++|.+||+... .+.+++ T Consensus 4 ~~~~~~~~~~~~~-----~~~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-----------~~~~~~ 62 (298) T 2pv7_A 4 ESYANENQFGFKT-----INS-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-----------AVAESI 62 (298) T ss_dssp ---------CCCC-----SCT-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-----------GGHHHH T ss_pred hHHhhhhccCccc-----cCC-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-----------cCHHHH Confidence 4445566777861 111 346899999 999999999999999999999985432 156788 Q ss_pred hccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCC-CCCCcccc Q psy13054 1008 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL-PADHPLVQ 1086 (1128) Q Consensus 1008 l~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl-~~~~pL~~ 1086 (1128) +++||+|++++|.. .+..++. +....++++++++++++......+++.+.+. . ++....|+ .+..+++. T Consensus 63 ~~~aDvVilavp~~-~~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~---~-----~~v~~hP~~g~~~~~~~ 132 (298) T 2pv7_A 63 LANADVVIVSVPIN-LTLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEVHT---G-----AVLGLHPMFGADIASMA 132 (298) T ss_dssp HTTCSEEEECSCGG-GHHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHHCS---S-----EEEEEEECSCTTCSCCT T ss_pred hcCCCEEEEeCCHH-HHHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHhcC---C-----CEEeeCCCCCCCchhhc Confidence 99999999999955 4777774 4556789999999998876544455544431 1 22222342 12235666 Q ss_pred CCCeEECCCC Q psy13054 1087 LDNCVLTPHT 1096 (1128) Q Consensus 1087 ~pNvilTPHi 1096 (1128) -.++++|||- T Consensus 133 g~~~~l~~~~ 142 (298) T 2pv7_A 133 KQVVVRCDGR 142 (298) T ss_dssp TCEEEEEEEE T ss_pred CCeEEEecCC Confidence 6689999975 |
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
---|
Probab=98.61 E-value=2.1e-08 Score=114.40 Aligned_cols=138 Identities=16% Similarity=0.095 Sum_probs=94.5 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhcc----CCEEEEecCCCcccccccC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAE----SDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~----sDvV~l~lPlt~~T~~li~ 1029 (1128) -++|||||+|.||..+|+.|+..|++|++||++..... +.+.|+.. .++++++++ +|+|++|+|. ..+..++. T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~ 86 (341) T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD 86 (341) T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH Confidence 35799999999999999999999999999997655443 55667654 478888765 7999999994 56777773 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEE-EeccCCC---CCCCCCccccCCCeEECCCCCC Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAG-LDVMIPE---PLPADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaa-LDV~e~E---Pl~~~~pL~~~pNvilTPHiag 1098 (1128) .+..+++++++++++..+.--.+++.+.+.. ....+ -=++-+| |...+..|+.-.++++||+-.. T Consensus 87 --~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~--~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~ 155 (341) T 3ktd_A 87 --AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQ--HRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLF 155 (341) T ss_dssp --HHHHHCTTCCEEECCSCSHHHHHHHHHTTCG--GGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGT T ss_pred --HHHccCCCCEEEEcCCCChHHHHHHHHhCCC--CcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCC Confidence 3455699999999987664333444443321 11111 1122222 2223456777778999998543 |
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
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Probab=98.59 E-value=9.7e-08 Score=113.65 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=97.6 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc---CCc---ccChHhhhc---cCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL---GAQ---LVPLDTLCA---ESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~---g~~---~~~l~ell~---~sDvV~l~lPlt~~T~ 1025 (1128) .++|||||+|.||..+|+.|...|.+|++||++..+.+ ..+. +.. ..+++|+++ .+|+|++++|..+.++ T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 83 (484) T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD 83 (484) T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH Confidence 46899999999999999999999999999998776554 2222 222 247888887 5999999999888888 Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP 1075 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~ 1075 (1128) .++ .+.+..|++|.++|+++++...+...+.+.|++..+.....-|.-. T Consensus 84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg 132 (484) T 4gwg_A 84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGG 132 (484) T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH T ss_pred HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCC Confidence 888 5788899999999999999999999999999888776655555443 |
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
---|
Probab=98.58 E-value=6.5e-08 Score=111.16 Aligned_cols=106 Identities=17% Similarity=0.264 Sum_probs=86.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhc-cCCEEEEecCCCcccccccC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCA-ESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~-~sDvV~l~lPlt~~T~~li~ 1029 (1128) ++.||+|+|+|+|+||+.+|+.|..+|++|+++|+...+.. ..+.+.+.++.++++. +|||++.|. +.++|+ T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-----~~~~I~ 244 (364) T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVLN 244 (364) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCBS T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-----hHHHhC Confidence 48999999999999999999999999999998886554333 3344777778888877 899999763 677899 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128) .+.++.|+ ..+++|.+++.+.+++ ..+.|+++.+ T Consensus 245 ~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi 278 (364) T 1leh_A 245 DFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI 278 (364) T ss_dssp TTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC T ss_pred HHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC Confidence 88899995 6789999999998866 5567777666 |
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
---|
Probab=98.56 E-value=5.3e-08 Score=108.03 Aligned_cols=106 Identities=17% Similarity=0.136 Sum_probs=87.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCH--HH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR--KQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~--~~ 1032 (1128) ++|||||+|.||+.+|+.|...|++|.+|| +..+.. ..+.|+.. .+++++++++|+|++++|....++.++.. +. T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 82 (295) T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC 82 (295) T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH Confidence 479999999999999999999999999998 655543 33446554 47889999999999999977767776642 45 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ...++++.++|+++.+...+.+.+.+.+.+. T Consensus 83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 113 (295) T 1yb4_A 83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113 (295) T ss_dssp TTSCCTTEEEEECSCCCHHHHHHHHHHHHTT T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc Confidence 5678999999999999888888999998874 |
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
---|
Probab=98.56 E-value=6.8e-08 Score=106.72 Aligned_cols=106 Identities=18% Similarity=0.237 Sum_probs=86.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~ 1035 (1128) ++|||||+|.||+.+|+.|.. |++|.+||++..+.. ..+.|+...+++++++++|+|++++|....++.++ ++.... T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~~ 79 (289) T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPY 79 (289) T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHH-HHHHhh Confidence 479999999999999999999 999999987665543 33335444447788899999999999776677766 455677 Q ss_pred CCCCcEEEEcCCCcccCHHHHHHHHhcCC Q psy13054 1036 MKPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1036 mk~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128) ++++.++|+++.+...+.+.+.+.+.+.. T Consensus 80 l~~~~~vv~~s~~~~~~~~~l~~~~~~~g 108 (289) T 2cvz_A 80 LREGTYWVDATSGEPEASRRLAERLREKG 108 (289) T ss_dssp CCTTEEEEECSCCCHHHHHHHHHHHHTTT T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHcC Confidence 89999999999998888889999988753 |
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
---|
Probab=98.55 E-value=6.4e-08 Score=107.64 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=89.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccC--HHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIG--RKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 1032 (1128) .+|||||+|.||+.+++.|...|.+|.+||+...+.+ ..+.|+.. .+++++++++|+|++++|....++.++. ++. T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299) T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299) T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH Confidence 4799999999999999999999999999987655443 33446654 3788999999999999998777777762 345 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128) ...++++.++|+++.|...+.+.|.+.+.+..+ T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~ 118 (299) T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV 118 (299) T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC Confidence 677899999999999988778899999877543 |
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
---|
Probab=98.55 E-value=1.2e-07 Score=105.07 Aligned_cols=157 Identities=11% Similarity=0.141 Sum_probs=109.2 Q ss_pred ecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCc Q psy13054 861 YTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWA 940 (1128) Q Consensus 861 ~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~ 940 (1128) +.+..++++..+ +.+.-.+....++|.++. +.|- ..|+|++.. +++.++.+ .+ + T Consensus 72 tiP~k~~i~~~l-d~l~~~A~~~gavnti~~----~~g~----~~g~nTd~~-----G~~~~l~~----------~~-~- 125 (275) T 2hk9_A 72 TVPFKEEIIPLL-DYVEDTAKEIGAVNTVKF----ENGK----AYGYNTDWI-----GFLKSLKS----------LI-P- 125 (275) T ss_dssp CTTSTTTTGGGC-SEECHHHHHHTCCCEEEE----ETTE----EEEECCHHH-----HHHHHHHH----------HC-T- T ss_pred CccCHHHHHHHH-HHhhHHHHHhCCcceEEe----eCCE----EEeecCCHH-----HHHHHHHH----------hC-C- Confidence 456777888776 777777777888888764 3442 234555443 44444432 11 1 Q ss_pred cccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc-ChHhhhccCCEEEEe Q psy13054 941 LKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV-PLDTLCAESDFIFVT 1017 (1128) Q Consensus 941 ~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~-~l~ell~~sDvV~l~ 1017 (1128) ++.|++++|||.|.+|+++++.|...|++|.++|++.++.. ....++... +++++++++|+|+++ T Consensus 126 ------------~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~a 193 (275) T 2hk9_A 126 ------------EVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNT 193 (275) T ss_dssp ------------TGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEEC T ss_pred ------------CcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEe Confidence 36789999999999999999999999999999987655433 233354444 788999999999999 Q ss_pred cCCCc--ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1018 CALTK--DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1018 lPlt~--~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) +|... ++...++ ++.+++++++++++. .. ..+.+..++ T Consensus 194 tp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~~-t~ll~~a~~ 233 (275) T 2hk9_A 194 TSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---KE-TKLLKKAKE 233 (275) T ss_dssp SSTTSSTTCCCSSC---GGGCCTTSEEEESSS---SC-CHHHHHHHH T ss_pred CCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---Ch-HHHHHHHHH Confidence 99764 2334554 466899999999988 33 334444444 |
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
---|
Probab=98.54 E-value=2.6e-07 Score=101.76 Aligned_cols=143 Identities=20% Similarity=0.132 Sum_probs=97.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc---ccChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ---LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~---~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) .+|+|||+|.||+.+|+.|...|++|++||++..+.. ..+.|.. ..+++++ +++|+|++++| .+.+..++. +. T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~-~~~~~~~~~-~l 77 (279) T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTP-IQLILPTLE-KL 77 (279) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSC-HHHHHHHHH-HH T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECC-HHHHHHHHH-HH Confidence 3799999999999999999999999999986654433 3344552 2478888 99999999999 445666663 45 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCC---CCCCCCCccccCCCeEECCCCCCCcHHHHHH Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIP---EPLPADHPLVQLDNCVLTPHTSSATKAVRDE 1106 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~---EPl~~~~pL~~~pNvilTPHiag~t~e~~~~ 1106 (1128) ...+++++++|+++.......+.+.+.+. ++-+. .-++-. .|....+.++.-+.++++|+-++ +.+..+. T Consensus 78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~-~~~~~~~ 150 (279) T 2f1k_A 78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT-DPEQLAC 150 (279) T ss_dssp GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECTTC-CHHHHHH T ss_pred HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCCCC-CHHHHHH Confidence 66789999999998776665666665543 33222 223311 23333345666678899998544 4444433 |
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
---|
Probab=98.54 E-value=4.1e-08 Score=115.01 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=78.1 Q ss_pred cccCC-CeEEEEEcChhhHHHHHHHhhC------CCEEEEEeCCCCchh--hhhcCCcc-----cChHhhhccCCEEEEe Q psy13054 952 MGLKG-ATVGIVGLGNIGLETAKLLKAF------KVSKILYTSRRVKEE--GTALGAQL-----VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 952 ~~L~g-ktvGIIG~G~IG~~vA~~l~af------G~~Vi~~d~~~~~~~--~~~~g~~~-----~~l~ell~~sDvV~l~ 1017 (1128) ..+.| |+|||||+|.||.++|+.|+.. |++|++.+++..+.. +.+.|+.. .+++|++++||+|+++ T Consensus 49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILa 128 (525) T 3fr7_A 49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLL 128 (525) T ss_dssp HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEEC T ss_pred HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEEC Confidence 37899 9999999999999999999988 999887766544332 55667764 5899999999999999 Q ss_pred cCCCcccccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1018 CALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1018 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) +|..... .++. +.+..||+|++ |-.+.|- T Consensus 129 VP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaGf 157 (525) T 3fr7_A 129 ISDAAQA-DNYE-KIFSHMKPNSI-LGLSHGF 157 (525) T ss_dssp SCHHHHH-HHHH-HHHHHSCTTCE-EEESSSH T ss_pred CChHHHH-HHHH-HHHHhcCCCCe-EEEeCCC Confidence 9976654 4776 78899999999 5777774 |
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
---|
Probab=98.53 E-value=1.1e-07 Score=113.49 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=92.4 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc----CCcc-cChHhhhcc---CCEEEEecCCCccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL----GAQL-VPLDTLCAE---SDFIFVTCALTKDT 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~----g~~~-~~l~ell~~---sDvV~l~lPlt~~T 1024 (1128) +..++|||||+|.||+.+|+.|...|.+|.+||++..+.+ ..+. |+.. .+++++++. +|+|++++|..+.+ T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 92 (480) T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT 92 (480) T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH Confidence 5678899999999999999999999999999987665543 2222 5544 378898887 99999999988888 Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +.++ .+....+++|.++|+++.|...+...+.+.+++..+.. T Consensus 93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~ 134 (480) T 2zyd_A 93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNF 134 (480) T ss_dssp HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE T ss_pred HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCe Confidence 8888 46778899999999999999888888999998755543 |
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
---|
Probab=98.53 E-value=7.3e-08 Score=107.30 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=88.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC--HHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG--RKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 1032 (1128) ++|||||+|.||+.+++.|...|++|.+||++..+.. ..+.|+... +++++++++|+|++++|....++.++. .+. T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 84 (301) T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV 84 (301) T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH Confidence 5799999999999999999999999999987654443 333466543 788999999999999998777877774 356 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ...++++.++|+++.|...+.+.|.+.+.+. T Consensus 85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~ 115 (301) T 3cky_A 85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEK 115 (301) T ss_dssp HHHSCTTCEEEECCCCCHHHHHHHHHHHHHT T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc Confidence 6778999999999999877788899888764 |
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
---|
Probab=98.52 E-value=6.6e-08 Score=107.37 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=85.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCH--HH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR--KQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~--~~ 1032 (1128) ++|||||+|.||+.+|+.|...|++|.+||++..+.+ ..+.|+.. .+++++++++|+|++++|....++.++.. .. T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296) T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296) T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH Confidence 3799999999999999999999999999987665544 44456654 37889999999999999988777776643 25 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) +..++++.++|+++...+-+.+.+.+.+.+ T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (296) T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEK 110 (296) T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHH T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHH Confidence 567899999999888887777777777765 |
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
---|
Probab=97.89 E-value=1.4e-08 Score=107.42 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=76.6 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) +.+++|||||+|.||+.+|+.|...|++|.+|++..........++...+++++++++|+|++++|.. .++.++ .+ T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~-~~~~v~---~l 92 (201) T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHRE-HYDFLA---EL 92 (201) Confidence 67889999999999999999999999999999876542223334555558889999999999999964 677776 25 Q ss_pred ccCCCCcEEEEcCCCccc Q psy13054 1034 SLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lV 1051 (1128) ..+++++++||+++|-.. T Consensus 93 ~~~~~~~ivI~~~~G~~~ 110 (201) T 2yjz_A 93 ADSLKGRVLIDVSNNQKM 110 (201) Confidence 667889999999999864 |
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
---|
Probab=98.49 E-value=1.4e-07 Score=105.92 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=88.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCH--HH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR--KQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~--~~ 1032 (1128) ++|||||+|.||+.+|+.|...|++|.+||++..+.+ ..+.|+... +++++++++|+|++++|....++.++.. .. T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~ 110 (316) T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV 110 (316) T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH Confidence 6899999999999999999999999999987665544 344565543 7889999999999999977777776643 24 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128) +..++++.++|+++.+.....+.+.+.+....+ T Consensus 111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~ 143 (316) T 2uyy_A 111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG 143 (316) T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC Confidence 577899999999999887778888888865443 |
>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
---|
Probab=98.46 E-value=9.4e-09 Score=120.07 Aligned_cols=150 Identities=15% Similarity=0.163 Sum_probs=107.9 Q ss_pred CCCeEEEEEcccccCccchHHHH-----HcCCeEEecCCCchHhHHHHHHHHHHHHHHhhhhhhhhhhcCccccc-cccc Q psy13054 618 IKNLKVITTFSVGYDHLELHEIK-----ARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALK-QTHI 691 (1128) Q Consensus 618 ~p~Lk~I~~~g~G~D~iD~~~a~-----~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~i~~~~~~~r~G~W~~~-~~~~ 691 (1128) .+.++.|...|+|+|++|+..+. ++++.++|.+|+ ..+++++.+..++.+.|++....... .+.|... .... T Consensus 79 ~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~ 156 (404) T 1gpj_A 79 SEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVE 156 (404) T ss_dssp HHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHH T ss_pred chHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHH Confidence 46899999999999999999998 899999999998 57899999999999999987765443 4555321 0000 Q ss_pred cCC-ccCCCCCCEEEEEecChhhHHHHHHHhhCCC-eEEEEcCCCcccc------Cc---hhhhHHHHHhhc----CCCh Q psy13054 692 IGP-NIMGLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE------GQ---LFSLVYDFCRYS----IGGV 756 (1128) Q Consensus 692 ~~~-~~~~l~gktvGIiG~G~IG~~va~r~~afg~-~vi~y~~~~~~~~------~~---~~~~~~~la~~~----pg~~ 756 (1128) ... ...++.|++|+|||+|.||+.+++.++++|+ +|++|++...+.+ +. .+.-+.++...+ -.++ T Consensus 157 ~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~ 236 (404) T 1gpj_A 157 LAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA 236 (404) T ss_dssp HHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS T ss_pred HHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccC Confidence 000 0115789999999999999999999999999 8888887543321 11 111244444444 3344 Q ss_pred hhhhhhhHHHHHH Q psy13054 757 TIKRLVKKTFILS 769 (1128) Q Consensus 757 ~t~~l~~~~~l~~ 769 (1128) .+.++++++.++. T Consensus 237 ~~~~~~~~~~l~~ 249 (404) T 1gpj_A 237 APHPVIHVDDVRE 249 (404) T ss_dssp SSSCCBCHHHHHH T ss_pred CCCceecHHHHHH Confidence 5566777777766 |
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
---|
Probab=98.43 E-value=3.4e-07 Score=109.58 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=92.0 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-----cCCcc-cChHhhhcc---CCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-----LGAQL-VPLDTLCAE---SDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-----~g~~~-~~l~ell~~---sDvV~l~lPlt~~T~ 1025 (1128) ..+|||||+|.||+.+|+.|...|.+|.+||++..+.+ ..+ .|+.. .+++++++. +|+|++++|..+.++ T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 89 (497) T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497) T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH Confidence 35799999999999999999999999999997776554 332 35544 378898877 999999999888888 Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) .++ .+....+++|.++|+++.+...+...+.+.+++..+.. T Consensus 90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~ 130 (497) T 2p4q_A 90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILF 130 (497) T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE T ss_pred HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCce Confidence 888 46778899999999999999888889999888754443 |
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
---|
Probab=98.41 E-value=1.3e-07 Score=102.76 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=67.2 Q ss_pred cccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc--------------hh--hhhcC-CcccChHhhhccCC Q psy13054 950 NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK--------------EE--GTALG-AQLVPLDTLCAESD 1012 (1128) Q Consensus 950 ~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~--------------~~--~~~~g-~~~~~l~ell~~sD 1012 (1128) ...++.+++|||||+|.||+.+|+.|...|.+|++||++..+ .. ....+ ....++.+++++|| T Consensus 13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 92 (245) T 3dtt_A 13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAE 92 (245) T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCS T ss_pred cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCC Confidence 344899999999999999999999999999999999876654 11 11223 33457899999999 Q ss_pred EEEEecCCCcccccccCHHH-HccCCCCcEEEEcCC Q psy13054 1013 FIFVTCALTKDTEQLIGRKQ-FSLMKPTAILVNTSR 1047 (1128) Q Consensus 1013 vV~l~lPlt~~T~~li~~~~-l~~mk~ga~lIN~aR 1047 (1128) +|++++|..... ..+. +. ...+ ++.++|+++- T Consensus 93 vVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s~ 125 (245) T 3dtt_A 93 LVVNATEGASSI-AALT-AAGAENL-AGKILVDIAN 125 (245) T ss_dssp EEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECCC T ss_pred EEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECCC Confidence 999999965443 3332 12 2233 8999999993 |
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
---|
Probab=98.37 E-value=2.6e-07 Score=100.99 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=79.7 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC--chh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--KEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~--~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128) +|||||+|.||+.+|+.|...|.+|++||+... ..+ ..+.|+. .+++++++++|+|++++|.....+.+ .+... T Consensus 2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~~ 78 (264) T 1i36_A 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAA--RRAGR 78 (264) T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHH--HHHHT T ss_pred eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHH--HHHHH Confidence 799999999999999999999999998865211 111 3334666 78889999999999999976666554 45667 Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1035 ~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) .+++ ++|+++.+...+.+.+.+.+.+. T Consensus 79 ~~~~--~vi~~s~~~~~~~~~l~~~~~~~ 105 (264) T 1i36_A 79 HVRG--IYVDINNISPETVRMASSLIEKG 105 (264) T ss_dssp TCCS--EEEECSCCCHHHHHHHHHHCSSS T ss_pred hcCc--EEEEccCCCHHHHHHHHHHHhhC Confidence 7777 99999988877778888888663 |
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
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Probab=98.36 E-value=4.7e-07 Score=107.63 Aligned_cols=134 Identities=14% Similarity=0.220 Sum_probs=95.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCCCchhh-hh-------------------cCCcc-cChHhhhccCCE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEEG-TA-------------------LGAQL-VPLDTLCAESDF 1013 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~~~~~~-~~-------------------~g~~~-~~l~ell~~sDv 1013 (1128) ++|||||+|.||..+|..|... |.+|++||.+..+.+. .+ .++.. .++++.+++||+ T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv 85 (467) T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL 85 (467) T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE Confidence 5899999999999999999887 8999999876544331 10 12333 367888999999 Q ss_pred EEEecCCCccccccc-----------C--HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEe---ccCCCC Q psy13054 1014 IFVTCALTKDTEQLI-----------G--RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLD---VMIPEP 1077 (1128) Q Consensus 1014 V~l~lPlt~~T~~li-----------~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLD---V~e~EP 1077 (1128) |++|+|......+.+ + +...+.|++++++|++|...+-..+.+.+.+++.... .+| ++.+|+ T Consensus 86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~ 163 (467) T 2q3e_A 86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF 163 (467) T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC T ss_pred EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH Confidence 999999655444322 1 2345678999999999998888888898888775421 133 366777 Q ss_pred CCCCCc---cccCCCeEE Q psy13054 1078 LPADHP---LVQLDNCVL 1092 (1128) Q Consensus 1078 l~~~~p---L~~~pNvil 1092 (1128) +.+... +...+++++ T Consensus 164 ~~~G~~~~d~~~~~rivv 181 (467) T 2q3e_A 164 LAEGTAIKDLKNPDRVLI 181 (467) T ss_dssp CCTTSHHHHHHSCSCEEE T ss_pred hhcccchhhccCCCEEEE Confidence 665554 345566654 |
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
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Probab=98.36 E-value=4.7e-07 Score=107.90 Aligned_cols=115 Identities=19% Similarity=0.216 Sum_probs=91.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc----CCcc-cChHhhhcc---CCEEEEecCCCcccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL----GAQL-VPLDTLCAE---SDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~----g~~~-~~l~ell~~---sDvV~l~lPlt~~T~~l 1027 (1128) ++|||||+|.||+.+|+.|...|.+|.+||++..+.+ ..+. ++.. .+++++++. +|+|++++|....++.+ T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474) T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474) T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH Confidence 5799999999999999999999999999987655443 2222 4543 478898876 99999999988788887 Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128) + .+....+++|.++|+++.|...+...+.+.+++..+.....-| T Consensus 86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv 129 (474) T 2iz1_A 86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGV 129 (474) T ss_dssp H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEE T ss_pred H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCC Confidence 7 4566789999999999999888888899888775554433333 |
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
---|
Probab=98.34 E-value=5.6e-07 Score=107.43 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=92.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-----cCCcc-cChHhhhc---cCCEEEEecCCCccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-----LGAQL-VPLDTLCA---ESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-----~g~~~-~~l~ell~---~sDvV~l~lPlt~~T~~ 1026 (1128) ++|||||+|.||+.+|..|...|.+|.+||++..+.+ ..+ .++.. .+++++++ .+|+|++++|..+.++. T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482) T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482) T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH Confidence 4799999999999999999999999999987766544 332 34543 47888874 89999999998778888 Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEecc Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128) ++. +....+++|.++|+++.|...+...+.+.+.+..+.....-|+ T Consensus 83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~ 128 (482) T 2pgd_A 83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVS 128 (482) T ss_dssp HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE T ss_pred HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCC Confidence 874 5667899999999999999888888888887755544433443 |
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
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Probab=98.34 E-value=6.2e-07 Score=100.24 Aligned_cols=136 Identities=16% Similarity=0.111 Sum_probs=92.4 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc-------CCccc-ChHhhhccCCEEEEecCCCccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL-------GAQLV-PLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~-------g~~~~-~l~ell~~sDvV~l~lPlt~~T 1024 (1128) -+.|+|||||+|.||..+|+.+. .|.+|++||+.....+ ..+. +++.. ++++ +++||+|+.++|...+. T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v 87 (293) T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT 87 (293) T ss_dssp --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH T ss_pred cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH Confidence 46799999999999999999999 9999999997765443 2222 34433 6776 89999999999999887 Q ss_pred ccccCHHHHccCCCCcEEE-EcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHH Q psy13054 1025 EQLIGRKQFSLMKPTAILV-NTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAV 1103 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lI-N~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~ 1103 (1128) +..+=+ .++.+ ++++++ |+|.-++ ..+.++++ ......++..|. |. ...+-+.++|+-.+ ++++ T Consensus 88 k~~l~~-~l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~--Pv------~~~~lveiv~g~~t-~~~~ 152 (293) T 1zej_A 88 KVEVLR-EVERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN--PP------HVMPLVEIVISRFT-DSKT 152 (293) T ss_dssp HHHHHH-HHHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS--ST------TTCCEEEEEECTTC-CHHH T ss_pred HHHHHH-HHhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC--cc------ccCCEEEEECCCCC-CHHH Confidence 665533 36777 999985 8877443 45555443 233456666665 32 23456667766332 3444 Q ss_pred HHH Q psy13054 1104 RDE 1106 (1128) Q Consensus 1104 ~~~ 1106 (1128) .++ T Consensus 153 ~~~ 155 (293) T 1zej_A 153 VAF 155 (293) T ss_dssp HHH T ss_pred HHH Confidence 443 |
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
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Probab=98.28 E-value=6.9e-07 Score=106.53 Aligned_cols=116 Identities=19% Similarity=0.227 Sum_probs=91.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-hcC-------Ccc-cChHhhhcc---CCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-ALG-------AQL-VPLDTLCAE---SDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-~~g-------~~~-~~l~ell~~---sDvV~l~lPlt~~ 1023 (1128) .+|||||+|.||+.+|..|...|.+|.+||+...+.+ .. ..| +.. .+++++++. +|+|++++|..+. T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~ 81 (478) T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (478) T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH Confidence 3699999999999999999999999999987655443 22 224 332 378888874 9999999998777 Q ss_pred cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEecc Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128) ++.++ ++....++++.++|+++.|...+.+.+.+.+.+..+.....-|. T Consensus 82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~ 130 (478) T 1pgj_A 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS 130 (478) T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE T ss_pred HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeecc Confidence 88877 45667889999999999998888888999998765554433444 |
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
---|
Probab=98.28 E-value=9.7e-07 Score=87.70 Aligned_cols=91 Identities=12% Similarity=0.179 Sum_probs=71.3 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCc---ccChHhhhccCCEEEEecCCCcccccccC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQ---LVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~---~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) .+++|+|||.|.||+.+++.|+..|++|.++++...+.. ....+.. ..+++++++++|+|++++|.. ..+++ T Consensus 20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~ 96 (144) T 3oj0_A 20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVE 96 (144) T ss_dssp CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBC T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEee Confidence 388999999999999999999999999989987665543 3344543 247889999999999999966 34555 Q ss_pred HHHHccCCCCcEEEEcCCCccc Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lV 1051 (1128) . +.+++|.++++++...-+ T Consensus 97 ~---~~l~~g~~vid~~~p~~~ 115 (144) T 3oj0_A 97 E---RSLMPGKLFIDLGNPPNI 115 (144) T ss_dssp G---GGCCTTCEEEECCSSCSB T ss_pred H---HHcCCCCEEEEccCCccC Confidence 4 456789999999876433 |
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
---|
Probab=98.27 E-value=6.3e-07 Score=95.47 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=73.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) .+++|+|||+|.||+.+++.|...|.+|.+++++..+.+ ..+.++...+++++++++|+|++++|. ...+.+++ + T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~-~~~~~v~~---l 102 (215) T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFR-EHYSSLCS---L 102 (215) T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCG-GGSGGGGG---G T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCCh-HHHHHHHH---H Confidence 457899999999999999999999999999987654433 333366656888999999999999994 45666663 4 Q ss_pred ccCCCCcEEEEcCCCcccC Q psy13054 1034 SLMKPTAILVNTSRGGLLD 1052 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVd 1052 (1128) +.+.+++++|++++|...+ T Consensus 103 ~~~~~~~~vv~~s~g~~~~ 121 (215) T 2vns_A 103 SDQLAGKILVDVSNPTEQE 121 (215) T ss_dssp HHHHTTCEEEECCCCCHHH T ss_pred HHhcCCCEEEEeCCCcccc Confidence 4444899999999997654 |
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
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Probab=98.26 E-value=3.7e-06 Score=96.63 Aligned_cols=162 Identities=14% Similarity=0.156 Sum_probs=105.9 Q ss_pred CCccEEEEccccCCcCChhhhhhCCcEEEEc---CCCC-----hhHHHHHHH--HHHHHHHhccHHHHHHHHcCC-Cccc Q psy13054 874 ENLKVITTFSVGYDHLELHEIKARGIRVGSV---GHIS-----SDTVAEYNI--GLAIAVSRRFQEGRKCITSGE-WALK 942 (1128) Q Consensus 874 ~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~---p~~~-----a~sVAE~al--aliL~~~R~i~~~~~~~~~g~-w~~~ 942 (1128) +++.++......++.-.++.+.++||...|. |.-. -.++++.+- +.++.+..-.. . ..|+ +. T Consensus 86 ~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~nt~~-~----~~g~G~~-- 158 (361) T 1pjc_A 86 KDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARFLER-Q----QGGRGVL-- 158 (361) T ss_dssp TTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHHTSG-G----GTSCCCC-- T ss_pred CCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHHHhh-c----cCCCcee-- Confidence 5665555555555555567778888888764 4321 135555444 44444422111 0 1111 10 Q ss_pred cccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc--------cChHhhhccCCE Q psy13054 943 QTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL--------VPLDTLCAESDF 1013 (1128) Q Consensus 943 ~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~--------~~l~ell~~sDv 1013 (1128) .. ....+.+++|.|+|.|.+|+.+++.++.+|++|+++|++..+.+ ..+.+... .++.+.++.+|+ T Consensus 159 ----l~-~l~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 233 (361) T 1pjc_A 159 ----LG-GVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADL 233 (361) T ss_dssp ----TT-CBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSE T ss_pred ----cc-CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCE Confidence 00 11247789999999999999999999999999999997765543 22222211 246677889999 Q ss_pred EEEecCCCc-ccccccCHHHHccCCCCcEEEEcCC Q psy13054 1014 IFVTCALTK-DTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1014 V~l~lPlt~-~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) |+.+++... .+..++.++.++.|++++++|+++- T Consensus 234 VI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361) T 1pjc_A 234 LIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 268 (361) T ss_dssp EEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC T ss_pred EEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec Confidence 999987533 2455678889999999999999974 |
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
---|
Probab=98.18 E-value=1.1e-06 Score=97.52 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=74.2 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHc Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128) ++|||||+ |.||+.+|+.|...|.+|++||++..+.+ ..+.|+...++.++++++|+|++++|... ++.++ ++... T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~~ 89 (286) T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNI-IEKVA-EDIVP 89 (286) T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHGG T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHHH Confidence 58999999 99999999999999999999987654433 33456655678889999999999999544 66666 35556 Q ss_pred cCCCCcEEEEcCCCcc Q psy13054 1035 LMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1035 ~mk~ga~lIN~aRG~l 1050 (1128) .+++++++|+++.|.. T Consensus 90 ~l~~~~ivv~~s~~~~ 105 (286) T 3c24_A 90 RVRPGTIVLILDAAAP 105 (286) T ss_dssp GSCTTCEEEESCSHHH T ss_pred hCCCCCEEEECCCCch Confidence 7899999999988873 |
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
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Probab=98.18 E-value=5.1e-06 Score=98.11 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=111.8 Q ss_pred CCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccc-cCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEE Q psy13054 905 GHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI-IGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKI 983 (1128) Q Consensus 905 p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~-~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi 983 (1128) .|-|-..|-|.+.+++|...| ..++|..+.... |. ......=++|||||+|.||..+|..+...|.+|+ T Consensus 12 ~~~~~~~~~~~~~~~~~~a~~---------~~~~w~~p~~~~~~~-~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~ 81 (460) T 3k6j_A 12 TGENLYFQGSEVRSYLMEAHS---------LAGQWSLPNDRGDHT-NSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETF 81 (460) T ss_dssp TSGGGGGCBCHHHHHHHHTTC---------CTTSCBCSTTSCBTT-SCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEE T ss_pred cccchhhhhHHHHHHHHhHHH---------hhccccCCCCccccc-cCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEE Confidence 344555666777777776322 345687431110 11 1111223689999999999999999999999999 Q ss_pred EEeCCCCchh---------hhhcCC-------------cc-cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCc Q psy13054 984 LYTSRRVKEE---------GTALGA-------------QL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTA 1040 (1128) Q Consensus 984 ~~d~~~~~~~---------~~~~g~-------------~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga 1040 (1128) +||....+.. ..+.|. +. .+++ .+++||+|+.++|.+.+.+.-+=++..+.+++++ T Consensus 82 l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~a 160 (460) T 3k6j_A 82 LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTC 160 (460) T ss_dssp EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTC T ss_pred EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCC Confidence 9997665211 112221 12 3564 6899999999999887765444356777899999 Q ss_pred EEE-EcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHH Q psy13054 1041 ILV-NTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKS 1108 (1128) Q Consensus 1041 ~lI-N~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~ 1108 (1128) +|+ |+|. +....+.+.++. +-...++..|. |.+ .++-|-++|+-. .++++.+++. T Consensus 161 IlasnTSs---l~i~~ia~~~~~-p~r~iG~Hffn--Pv~------~m~LvEIv~g~~-Ts~e~~~~~~ 216 (460) T 3k6j_A 161 IFGTNTSS---LDLNEISSVLRD-PSNLVGIHFFN--PAN------VIRLVEIIYGSH-TSSQAIATAF 216 (460) T ss_dssp EEEECCSS---SCHHHHHTTSSS-GGGEEEEECCS--STT------TCCEEEEECCSS-CCHHHHHHHH T ss_pred EEEecCCC---hhHHHHHHhccC-CcceEEEEecc--hhh------hCCEEEEEeCCC-CCHHHHHHHH Confidence 996 5553 445666666643 33566777776 322 234456666532 3444444443 |
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
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Probab=98.18 E-value=9.3e-07 Score=96.73 Aligned_cols=98 Identities=14% Similarity=0.176 Sum_probs=76.0 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchh-h-hhcCCcc-cChHhhhccCCEEEEecCCCcccccccC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEE-G-TALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~-~-~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) +.+.+|||||+|.||+.+|+.+...|.+ |.+||+...+.+ . ...++.. .+++++++++|+|++++|.. ..+.++. T Consensus 8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~~ 86 (266) T 3d1l_A 8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELLQ 86 (266) T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHHH T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHHH Confidence 4567899999999999999999988998 788886554433 2 2336654 37889999999999999965 4455553 Q ss_pred HHHHccCCCCcEEEEcCCCcccCH Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQ 1053 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde 1053 (1128) +....+++++++|+++.|...+. T Consensus 87 -~l~~~~~~~~ivv~~s~~~~~~~ 109 (266) T 3d1l_A 87 -GIVEGKREEALMVHTAGSIPMNV 109 (266) T ss_dssp -HHHTTCCTTCEEEECCTTSCGGG T ss_pred -HHHhhcCCCcEEEECCCCCchHH Confidence 45567889999999999877543 |
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
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Probab=98.11 E-value=2.4e-06 Score=90.67 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=63.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) ++.+++|+|||+|.||+.+|+.|...|.+|.+||++.. .+++||+|++++| .+.++.++. +. T Consensus 16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------~~~~aD~vi~av~-~~~~~~v~~-~l 77 (209) T 2raf_A 16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------ATTLGEIVIMAVP-YPALAALAK-QY 77 (209) T ss_dssp ----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------CSSCCSEEEECSC-HHHHHHHHH-HT T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------HhccCCEEEEcCC-cHHHHHHHH-HH Confidence 57889999999999999999999999999999975432 5678999999999 777777764 34 Q ss_pred HccCCCCcEEEEcCCCcc Q psy13054 1033 FSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~l 1050 (1128) ...++ ++++|++++|-- T Consensus 78 ~~~~~-~~~vi~~~~g~~ 94 (209) T 2raf_A 78 ATQLK-GKIVVDITNPLN 94 (209) T ss_dssp HHHHT-TSEEEECCCCBC T ss_pred HHhcC-CCEEEEECCCCC Confidence 45677 999999999765 |
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
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Probab=98.06 E-value=8.4e-06 Score=88.72 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=75.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-hhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-TALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) .+|||||+|.||+.+++.|...|..|.+||++..+.. . ...|+... +++++++++|+|++++| ..... +.+ T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~-----~v~ 77 (259) T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFE-----TVL 77 (259) T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHH-----HHH T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHH-----HHH Confidence 4799999999999999999999999999987655433 2 23466543 78899999999999999 44443 445 Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ..++++.++|++..|-- .+.+.+.+..+ T Consensus 78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~ 105 (259) T 2ahr_A 78 KPLHFKQPIISMAAGIS--LQRLATFVGQD 105 (259) T ss_dssp TTSCCCSCEEECCTTCC--HHHHHHHHCTT T ss_pred HHhccCCEEEEeCCCCC--HHHHHHhcCCC Confidence 55778999999977643 45577777654 |
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
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Probab=98.03 E-value=2.6e-06 Score=89.77 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=81.8 Q ss_pred eEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-hhcC-------CcccChHhhhccCCEEEEecCCCcccccc Q psy13054 958 TVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-TALG-------AQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 958 tvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-~~~g-------~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) +|+||| .|.||+.+++.|...|.+|.+++++..+.. . ...+ +...+++++++++|+|++++| .+.++.+ T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~-~~~~~~~ 80 (212) T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIP-WEHAIDT 80 (212) T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSC-HHHHHHH T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCC-hhhHHHH Confidence 699999 999999999999999999999987654432 1 1112 333478888999999999999 3445555 Q ss_pred cCHHHHccCCCCcEEEEcCCCcccC------------HHHHHHHHhcCCceEEEEeccCCCCC Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLD------------QEALVEFLKDKKIGGAGLDVMIPEPL 1078 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVd------------e~aL~~aL~~g~i~gaaLDV~e~EPl 1078 (1128) +. +....++ +.++|+++.|--.+ .+.+.+.+...+ .++++.++|. T Consensus 81 ~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~~----~v~~~~~~~~ 137 (212) T 1jay_A 81 AR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEK----VVSALHTIPA 137 (212) T ss_dssp HH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSC----EEECCTTCCH T ss_pred HH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCCe----EEEEccchHH Confidence 43 2333454 99999999876543 577777776433 3677777664 |
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
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Probab=98.03 E-value=4.3e-06 Score=90.65 Aligned_cols=102 Identities=15% Similarity=0.246 Sum_probs=77.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC----EEEEEeCCCCchh-h-hhcCCccc-ChHhhhccCCEEEEecCCCcccccccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV----SKILYTSRRVKEE-G-TALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~----~Vi~~d~~~~~~~-~-~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) ++|||||+|+||+.+++.|...|. +|.+||++..+.+ . ...|+... +++++++++|+|++++| ....+.++ T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v~- 80 (247) T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDLYASII- 80 (247) T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTTHHHHC- T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHHHHHHH- Confidence 589999999999999999999998 9999987665544 2 34577654 78999999999999997 44555555 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ++....++++.++|.+.-|- ..+.+.+.+.. T Consensus 81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~ 111 (247) T 3gt0_A 81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK 111 (247) T ss_dssp ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS T ss_pred HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC Confidence 34556688999999776553 35667676654 |
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
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Probab=98.03 E-value=7.6e-06 Score=96.36 Aligned_cols=136 Identities=18% Similarity=0.137 Sum_probs=89.5 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-------------------cC-Ccc-cChHhhhccCCEEE Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-------------------LG-AQL-VPLDTLCAESDFIF 1015 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-------------------~g-~~~-~~l~ell~~sDvV~ 1015 (1128) +|+|||+|.||..+|..|...|.+|++||....+.+ ..+ .+ +.. .++++.++.||+|+ T Consensus 2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvvi 81 (436) T 1mv8_A 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF 81 (436) T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEE Confidence 799999999999999999999999999987654433 111 12 222 36778899999999 Q ss_pred EecCCCcccccccC--------HHHHccCCC---CcEEEEcCCCcccC-HHHHHHHHhc--CCceEEEEe-ccCCCCCCC Q psy13054 1016 VTCALTKDTEQLIG--------RKQFSLMKP---TAILVNTSRGGLLD-QEALVEFLKD--KKIGGAGLD-VMIPEPLPA 1080 (1128) Q Consensus 1016 l~lPlt~~T~~li~--------~~~l~~mk~---ga~lIN~aRG~lVd-e~aL~~aL~~--g~i~gaaLD-V~e~EPl~~ 1080 (1128) +++|......+..| ++....+++ ++++|+.|...+-. ++.+.+.+++ |...+.... ++.+|.+.+ T Consensus 82 iaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~~ 161 (436) T 1mv8_A 82 ICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRE 161 (436) T ss_dssp ECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCCT T ss_pred EEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcccccc Confidence 99996655222222 334456788 99999998766655 5667777765 321111112 245666655 Q ss_pred CCcc---ccCCCeEEC Q psy13054 1081 DHPL---VQLDNCVLT 1093 (1128) Q Consensus 1081 ~~pL---~~~pNvilT 1093 (1128) .... ...+.+++. T Consensus 162 G~~~~~~~~~~~iv~G 177 (436) T 1mv8_A 162 STAIKDYDFPPMTVIG 177 (436) T ss_dssp TSHHHHHHSCSCEEEE T ss_pred cccchhccCCCEEEEE Confidence 4442 334455543 |
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
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Probab=98.01 E-value=4.6e-06 Score=95.36 Aligned_cols=64 Identities=17% Similarity=0.260 Sum_probs=56.7 Q ss_pred cccCCcccCHHHHhh-cCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 305 TALGAQLVPLDTLCA-ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 305 ~~~g~~~vsLdeLl~-~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) +++++++++++++++ +|||++- ..|.++||++.+++|| ..++||+|||++++++| .++|+++.| T Consensus 215 ~~~ga~~v~~~ell~~~~DIliP-----~A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gI 279 (355) T 1c1d_A 215 VALGHTAVALEDVLSTPCDVFAP-----CAMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGI 279 (355) T ss_dssp HHTTCEECCGGGGGGCCCSEEEE-----CSCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTC T ss_pred HhcCCEEeChHHhhcCccceecH-----hHHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCE Confidence 346788889999999 9999984 4799999999999998 78999999999999888 699999886 |
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
---|
Probab=97.99 E-value=1.2e-05 Score=90.74 Aligned_cols=105 Identities=15% Similarity=0.193 Sum_probs=79.9 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCC--chh-hhhcCCccc-ChHhhhccCCEEEEecCCCcccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRV--KEE-GTALGAQLV-PLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~--~~~-~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) +...+|||||+|.||..+|..|...| .+|.+||++.. +.+ ..+.|+... +..++++++|+|++++| ....+ T Consensus 20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~ 98 (322) T 2izz_A 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIP 98 (322) T ss_dssp --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHH T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHH Confidence 34468999999999999999999888 78999987664 332 445577654 78899999999999999 56666 Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) .++. +....++++.++|+++-|- ..+.+.+.+.+ T Consensus 99 ~vl~-~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~ 132 (322) T 2izz_A 99 FILD-EIGADIEDRHIVVSCAAGV--TISSIEKKLSA 132 (322) T ss_dssp HHHH-HHGGGCCTTCEEEECCTTC--CHHHHHHHHHT T ss_pred HHHH-HHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh Confidence 6663 4555688999999997764 34566666764 |
>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
---|
Probab=97.95 E-value=9.1e-06 Score=91.55 Aligned_cols=90 Identities=14% Similarity=0.235 Sum_probs=70.4 Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CCC-EEEEEeCCCCchh--hhhcC--Ccc-cChHhhhccCCEEEEecCCCcccccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FKV-SKILYTSRRVKEE--GTALG--AQL-VPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG~-~Vi~~d~~~~~~~--~~~~g--~~~-~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) ..++|||||+|.+|+.+++.+.. +|. +|.+||++..+.+ ....+ +.. .+++++++++|+|++++|. ++.+ T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v 210 (312) T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI 210 (312) T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc Confidence 46789999999999999999865 487 8999987665544 23334 443 4799999999999999994 3556 Q ss_pred cCHHHHccCCCCcEEEEcCCCcc Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) +.. +.+++|.++++++.... T Consensus 211 ~~~---~~l~~g~~vi~~g~~~p 230 (312) T 2i99_A 211 LFG---EWVKPGAHINAVGASRP 230 (312) T ss_dssp BCG---GGSCTTCEEEECCCCST T ss_pred cCH---HHcCCCcEEEeCCCCCC Confidence 765 57899999999987665 |
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
---|
Probab=97.93 E-value=2.1e-05 Score=92.25 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=91.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh------------------cCCcc-cChHhhhccCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA------------------LGAQL-VPLDTLCAESD 1012 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~------------------~g~~~-~~l~ell~~sD 1012 (1128) +..-++|+|||+|.+|..+|..|.. |.+|++||....+.+ ..+ .+++. .++++.++.|| T Consensus 33 ~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aD 111 (432) T 3pid_A 33 GSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNAD 111 (432) T ss_dssp --CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCS T ss_pred ccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCC Confidence 4455689999999999999999988 999999997665433 111 12333 36889999999 Q ss_pred EEEEecCCCccc-------ccccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCc Q psy13054 1013 FIFVTCALTKDT-------EQLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHP 1083 (1128) Q Consensus 1013 vV~l~lPlt~~T-------~~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~p 1083 (1128) +|++++|...+. ..+.. +...+ +++|+++|+.|.-.+-..+.+.+.+.+..+ +|.||-+.+... T Consensus 112 vViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v------~~sPe~~~~G~A 184 (432) T 3pid_A 112 YVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV------IFSPEFLREGRA 184 (432) T ss_dssp EEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE------EECCCCCCTTSH T ss_pred EEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE------eecCccCCcchh Confidence 999999965321 12221 34455 999999999999988888999998877533 245665544443 Q ss_pred c---ccCCCeEE Q psy13054 1084 L---VQLDNCVL 1092 (1128) Q Consensus 1084 L---~~~pNvil 1092 (1128) + +..+.|++ T Consensus 185 ~~~~l~p~rIvv 196 (432) T 3pid_A 185 LYDNLHPSRIVI 196 (432) T ss_dssp HHHHHSCSCEEE T ss_pred hhcccCCceEEe Confidence 3 33445543 |
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
---|
Probab=97.92 E-value=3.4e-05 Score=86.16 Aligned_cols=115 Identities=11% Similarity=0.100 Sum_probs=77.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hcC------------------Ccc-cChH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------ALG------------------AQL-VPLD 1005 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~g------------------~~~-~~l~ 1005 (1128) ++|+|||+|.||..+|..+...|.+|++||+...+.+ .. +.| ++. .+++ T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (302) T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 95 (302) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH Confidence 6899999999999999999999999999987654322 10 112 122 3677 Q ss_pred hhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC Q psy13054 1006 TLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128) Q Consensus 1006 ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128) +.++.||+|++++|...+.+.-+-++..+.++++++++..+.+ +....+.+.+... -..+++..+. T Consensus 96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~~-~~~~g~h~~~ 161 (302) T 1f0y_A 96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTRQ-DRFAGLHFFN 161 (302) T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSCG-GGEEEEEECS T ss_pred HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCCc-ccEEEEecCC Confidence 7899999999999976554333323455567899999854444 3345565555422 1234555554 |
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
---|
Probab=97.86 E-value=1e-05 Score=88.16 Aligned_cols=98 Identities=19% Similarity=0.209 Sum_probs=73.0 Q ss_pred eEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh-hh-hcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 958 TVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE-GT-ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~-~~-~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) +|||||+|.||+.+|+.|...| .+|.+||++..+.. .. ..|+... ++++++ ++|+|++++| ....+.++.. + T Consensus 2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~--l 77 (263) T 1yqg_A 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN--I 77 (263) T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT--C T ss_pred EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH--h Confidence 7999999999999999999889 99999987655443 22 2466654 677888 9999999999 6665555431 2 Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) .. + +.++|+++.|-- .+.|.+.+..+ T Consensus 78 ~~-~-~~ivv~~~~g~~--~~~l~~~~~~~ 103 (263) T 1yqg_A 78 RT-N-GALVLSVAAGLS--VGTLSRYLGGT 103 (263) T ss_dssp CC-T-TCEEEECCTTCC--HHHHHHHTTSC T ss_pred cc-C-CCEEEEecCCCC--HHHHHHHcCCC Confidence 22 4 899999966543 36777777664 |
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
---|
Probab=97.84 E-value=6.4e-05 Score=81.71 Aligned_cols=98 Identities=15% Similarity=0.286 Sum_probs=70.8 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCH Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ..+|||||+|.||+.+|+.|...| .+|.+||++..+ .|+... +.+++++++|+|++++| ...++.++. T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~- 76 (262) T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN- 76 (262) T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH- T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH- Confidence 468999999999999999998888 689999876554 455544 78899999999999999 456665553 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) +....++ +..+|....| ++.+.+.+.+..+ T Consensus 77 ~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~~ 106 (262) T 2rcy_A 77 NIKPYLS-SKLLISICGG--LNIGKLEEMVGSE 106 (262) T ss_dssp HSGGGCT-TCEEEECCSS--CCHHHHHHHHCTT T ss_pred HHHHhcC-CCEEEEECCC--CCHHHHHHHhCCC Confidence 3344554 5555555444 3345666666654 |
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
---|
Probab=97.83 E-value=1.8e-05 Score=87.69 Aligned_cols=109 Identities=11% Similarity=0.092 Sum_probs=81.5 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC---EEEEEeCCCCchh-hh-hcCCccc-ChHhhhccCCEEEEecCCCcccccccC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV---SKILYTSRRVKEE-GT-ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~---~Vi~~d~~~~~~~-~~-~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) .++|||||+|+||+.+++.+...|. +|.+||++..+.+ .. ..|+... +..+++++||+|++++|. ...+.++. T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl~ 81 (280) T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVCE 81 (280) T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHHH T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHHH Confidence 4789999999999999999999898 8999997766554 22 3477654 788999999999999983 44555553 Q ss_pred HHHHcc-CCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEE Q psy13054 1030 RKQFSL-MKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGA 1068 (1128) Q Consensus 1030 ~~~l~~-mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~ga 1068 (1128) +.-.. ++++.++|+++-|- ..+.|.+.+..+ ++.++ T Consensus 82 -~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~~~~vvr~ 119 (280) T 3tri_A 82 -ELKDILSETKILVISLAVGV--TTPLIEKWLGKASRIVRA 119 (280) T ss_dssp -HHHHHHHTTTCEEEECCTTC--CHHHHHHHHTCCSSEEEE T ss_pred -HHHhhccCCCeEEEEecCCC--CHHHHHHHcCCCCeEEEE Confidence 33334 68888999887664 457788888653 44333 |
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
---|
Probab=97.82 E-value=4e-05 Score=90.43 Aligned_cols=105 Identities=12% Similarity=0.182 Sum_probs=80.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC---------------------Ccc-cChHhhhccCCEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALG---------------------AQL-VPLDTLCAESDFI 1014 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g---------------------~~~-~~l~ell~~sDvV 1014 (1128) -+++|||+|.+|.++|..|...|.+|++||....+.+....+ .+. .++.+.+++||+| T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446) T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE Confidence 469999999999999999999999999999887765411111 223 3788999999999 Q ss_pred EEecCCCcc----------cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1015 FVTCALTKD----------TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1015 ~l~lPlt~~----------T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ++|+|.... .+..+ +...+.|+++.++|+.|.-.+-..+.+.+.+++ T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446) T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446) T ss_dssp EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH T ss_pred EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH Confidence 999985432 23333 356678999999999997666666777777765 |
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
---|
Probab=97.76 E-value=4e-05 Score=91.34 Aligned_cols=117 Identities=20% Similarity=0.255 Sum_probs=82.5 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-----------cCC-------------cc-cChHhhhc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-----------LGA-------------QL-VPLDTLCA 1009 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-----------~g~-------------~~-~~l~ell~ 1009 (1128) -++|||||+|.||..+|..+...|.+|++||.+....+ ..+ .|. +. .+++ .++ T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (483) T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA 83 (483) T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc Confidence 36899999999999999999999999999997665433 111 221 12 2454 689 Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEE-EEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCC Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAIL-VNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP 1077 (1128) Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l-IN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EP 1077 (1128) +||+|+.++|...+.+.-+=++..+.+++++++ .|+|.-. ...+.+.+.. +-..+++..|.+-| T Consensus 84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~~-p~~~ig~hf~~Pa~ 148 (483) T 3mog_A 84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIKN-PERVAGLHFFNPAP 148 (483) T ss_dssp GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSSS-GGGEEEEEECSSTT T ss_pred CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHccC-ccceEEeeecChhh Confidence 999999999988766543334567788999999 4776543 4566665543 33566777776544 |
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
---|
Probab=97.75 E-value=4.1e-05 Score=90.51 Aligned_cols=105 Identities=16% Similarity=0.216 Sum_probs=78.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-------------------c-CCcc-cChHhhhccCCEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-------------------L-GAQL-VPLDTLCAESDFI 1014 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-------------------~-g~~~-~~l~ell~~sDvV 1014 (1128) ++|+|||+|.+|..+|..|...|.+|++||....+.+ ..+ . .++. .+++++++.||+| T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450) T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE Confidence 5899999999999999999999999999997655433 111 1 1222 3688899999999 Q ss_pred EEecCCCc---------ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1015 FVTCALTK---------DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1015 ~l~lPlt~---------~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ++++|... ..+..+ +.....++++.++|+.|.-.+-..+.+.+.+++ T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~ 138 (450) T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE 138 (450) T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH T ss_pred EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH Confidence 99999653 233333 355677899999999997555556666666654 |
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
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Probab=97.73 E-value=4.8e-05 Score=83.89 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=77.7 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128) |+++.|+|.|.+|++++..|...|.+|.++++...+.+ ..+.++...+++++- ++|+|++++|..-.....++.+.+. T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~-~~DiVInaTp~Gm~~~~~l~~~~l~ 196 (269) T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKS-AFDLIINATSASLHNELPLNKEVLK 196 (269) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSS-CCSEEEECCTTCCCCSCSSCHHHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhc-cCCEEEEcccCCCCCCCCCChHHHH Confidence 89999999999999999999999999999998877664 225565555666654 9999999999764332346665433 Q ss_pred -cCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1035 -LMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1035 -~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) .++++.+++++.... .+.-+..|-+.| T Consensus 197 ~~l~~~~~v~D~vY~P--~T~ll~~A~~~G 224 (269) T 3phh_A 197 GYFKEGKLAYDLAYGF--LTPFLSLAKELK 224 (269) T ss_dssp HHHHHCSEEEESCCSS--CCHHHHHHHHTT T ss_pred hhCCCCCEEEEeCCCC--chHHHHHHHHCc Confidence 567888888888875 555334444444 |
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
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Probab=97.71 E-value=6.9e-05 Score=82.36 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=85.1 Q ss_pred cCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 954 LKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 954 L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) ++||++.|||.|. +|+.+|..|...|++|.+++++. .++++.+++||+|+.++|.. ++|.++. T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------~~L~~~~~~ADIVI~Avg~p----~~I~~~~ 211 (276) T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------KDIGSMTRSSKIVVVAVGRP----GFLNREM 211 (276) T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHHSSEEEECSSCT----TCBCGGG T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------ccHHHhhccCCEEEECCCCC----ccccHhh Confidence 7999999999986 79999999999999999987532 36889999999999999852 4787755 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHHH Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTSA 1112 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~~ 1112 (1128) +|+|+++|++|.-. .| |++- =||...+ ... .--.+||==||.-.-+..-+.+-++ T Consensus 212 ---vk~GavVIDvgi~~-~~----------gkl~---GDVdf~~-------v~~-~a~~iTPVPGGVGpmT~a~Ll~n~v 266 (276) T 3ngx_A 212 ---VTPGSVVIDVGINY-VN----------DKVV---GDANFED-------LSE-YVEAITPVPGGVGPITATNILENVV 266 (276) T ss_dssp ---CCTTCEEEECCCEE-ET----------TEEE---CSBCHHH-------HHT-TSSEECCTTTSSHHHHHHHHHHHHH T ss_pred ---ccCCcEEEEeccCc-cC----------Ccee---ccccHHH-------Hhh-hceEeCCCCCcChHHHHHHHHHHHH Confidence 49999999999766 22 4443 3553211 001 1246888767765555444444333 Q ss_pred H Q psy13054 1113 E 1113 (1128) Q Consensus 1113 ~ 1113 (1128) + T Consensus 267 ~ 267 (276) T 3ngx_A 267 K 267 (276) T ss_dssp H T ss_pred H Confidence 3 |
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
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Probab=97.70 E-value=5.4e-05 Score=85.92 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=74.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc-CC---------------cccChHhhhccCCEEEEecC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL-GA---------------QLVPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~-g~---------------~~~~l~ell~~sDvV~l~lP 1019 (1128) ++|+|||+|.||..+|..|...|.+|.+|+++..+.+ ..+. +. ...+++++++.+|+|++++| T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359) T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC Confidence 5899999999999999999999999999986554433 2222 21 12378888899999999999 Q ss_pred CCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) ... +..++ ++....+++++++|+. -|.......+.+.+.. T Consensus 85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~ 124 (359) T 1bg6_A 85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE 124 (359) T ss_dssp GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH T ss_pred chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh Confidence 554 45555 4556678999999999 4422344445555554 |
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
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Probab=97.69 E-value=8e-05 Score=82.26 Aligned_cols=117 Identities=21% Similarity=0.247 Sum_probs=84.9 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) +++||++.|||.|. +|+++|..|...|++|.+++++. .++++.+++||+|+.+++. .++|.++ T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------~~L~~~~~~ADIVI~Avg~----p~~I~~~ 220 (285) T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLLRSD 220 (285) T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHTTCSEEEECSSC----TTCBCGG T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhhcCCEEEECCCC----CCcCCHH Confidence 58999999999998 69999999999999999987542 3688999999999999984 3567765 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSS 1109 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~ 1109 (1128) . +|+|+++|+++.-.+-| |++-| ||...+- .-.--.+||==||.-.-+..-+.+ T Consensus 221 ~---vk~GavVIDVgi~~~~~----------gkl~G---DVdf~~v--------~~~a~~iTPVPGGVGpmT~a~Ll~ 274 (285) T 3p2o_A 221 M---VKEGVIVVDVGINRLES----------GKIVG---DVDFEEV--------SKKSSYITPVPGGVGPMTIAMLLE 274 (285) T ss_dssp G---SCTTEEEEECCCEECTT----------SCEEC---SBCHHHH--------TTTEEEECCSSSSHHHHHHHHHHH T ss_pred H---cCCCeEEEEeccCcccC----------CCEec---cccHHHH--------HhhheEeCCCCCcCcHHHHHHHHH Confidence 4 49999999999776533 55533 5532110 001246889767765544433333 |
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
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Probab=97.68 E-value=8.6e-05 Score=82.01 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=85.4 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||.|. +|+.+|..|...|++|.+.+++. .++++.+++||+|+.+++. .++|.++ T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I~~~ 221 (285) T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFITAD 221 (285) T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCBCGG T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHhcccCCEEEECCCC----CCCCCHH Confidence 58999999999998 69999999999999999886532 2688999999999999984 3567765 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) . +|+|+++|+++.-.+- |++- =||...+= .. .--.+||==||.-.-+..-+.+-+ T Consensus 222 ~---vk~GavVIDvgi~~~~-----------g~l~---GDVdf~~v-------~~-~a~~iTPVPGGVGpmT~a~Ll~nt 276 (285) T 3l07_A 222 M---VKEGAVVIDVGINHVD-----------GKIV---GDVDFAAV-------KD-KVAAITPVPGGVGPMTITELLYNT 276 (285) T ss_dssp G---SCTTCEEEECCCEEET-----------TEEE---CSBCHHHH-------TT-TCSEECCSSSSSHHHHHHHHHHHH T ss_pred H---cCCCcEEEEecccCcC-----------Ccee---cCccHHHH-------Hh-hheEeCCCCCcChHHHHHHHHHHH Confidence 4 4999999999976631 4443 35532110 00 113589977776655554444433 Q ss_pred H Q psy13054 1112 A 1112 (1128) Q Consensus 1112 ~ 1112 (1128) + T Consensus 277 v 277 (285) T 3l07_A 277 F 277 (285) T ss_dssp H T ss_pred H Confidence 3 |
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
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Probab=97.67 E-value=9e-05 Score=88.39 Aligned_cols=134 Identities=19% Similarity=0.229 Sum_probs=87.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCCCchh-hhhc-------------------CCcc-cChHhhhccCCE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEE-GTAL-------------------GAQL-VPLDTLCAESDF 1013 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~~~~~-~~~~-------------------g~~~-~~l~ell~~sDv 1013 (1128) ++|+|||+|.||..+|..|... |.+|++||.+..+.+ ..+. +... .++.+.++.||+ T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481) T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481) T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE Confidence 5899999999999999999776 799999987655433 1110 1222 256788899999 Q ss_pred EEEecCCCcc--------------cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc-CCceEEEEe---ccCC Q psy13054 1014 IFVTCALTKD--------------TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD-KKIGGAGLD---VMIP 1075 (1128) Q Consensus 1014 V~l~lPlt~~--------------T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~-g~i~gaaLD---V~e~ 1075 (1128) |++++|.... .+..+ +.....++++.++|+.|.-.+-..+.+.+.+++ ..+.. ++| ++-+ T Consensus 90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~-~~d~~v~~~P 167 (481) T 2o3j_A 90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNE-NLKFQVLSNP 167 (481) T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC-----CCEEEEECC T ss_pred EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCc-CCceEEEeCc Confidence 9999985432 12222 345667999999999887666566777787876 33211 122 2455 Q ss_pred CCCCCCCc---cccCCCeEE Q psy13054 1076 EPLPADHP---LVQLDNCVL 1092 (1128) Q Consensus 1076 EPl~~~~p---L~~~pNvil 1092 (1128) |-..+... +...+.+++ T Consensus 168 e~~~~G~a~~~~~~~~~ivi 187 (481) T 2o3j_A 168 EFLAEGTAMKDLANPDRVLI 187 (481) T ss_dssp CCCCTTCHHHHHHSCSCEEE T ss_pred ccccccchhhcccCCCEEEE Confidence 55444432 344456654 |
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
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Probab=97.67 E-value=7.3e-05 Score=82.63 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=91.7 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) +++|+++.|||.|+ +|+.+|+.|...|++|.+++++. .++.+.+++||+|+.+++.. ++|.++ T Consensus 156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~p----~lI~~~ 219 (288) T 1b0a_A 156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGKP----GFIPGD 219 (288) T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCCT----TCBCTT T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhccCCEEEECCCCc----CcCCHH Confidence 58999999999997 59999999999999999987443 36889999999999999933 367766 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) . +|+|+++|++|.-.+-| |++- =||-..+ .... --.+||==||.-.-+..-+.+-+ T Consensus 220 ~---vk~GavVIDVgi~r~~~----------g~l~---GDVdf~~-------v~~~-a~~iTPVPGGVGpmT~a~Ll~Nt 275 (288) T 1b0a_A 220 W---IKEGAIVIDVGINRLEN----------GKVV---GDVVFED-------AAKR-ASYITPVPGGVGPMTVATLIENT 275 (288) T ss_dssp T---SCTTCEEEECCCEECTT----------SCEE---CSBCHHH-------HHHH-CSEECCSSSSSHHHHHHHHHHHH T ss_pred H---cCCCcEEEEccCCccCC----------CCcc---CCcCHHH-------Hhhh-ccEecCCCCCccHHHHHHHHHHH Confidence 5 48999999999876432 5543 3552111 1111 23588887887766665555555 Q ss_pred HHHHHHHH Q psy13054 1112 AENIIRGY 1119 (1128) Q Consensus 1112 ~~nl~~~l 1119 (1128) ++..++++ T Consensus 276 v~aa~~~~ 283 (288) T 1b0a_A 276 LQACVEYH 283 (288) T ss_dssp HHHHHHTT T ss_pred HHHHHHhh Confidence 55555444 |
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
---|
Probab=97.66 E-value=7.9e-05 Score=87.47 Aligned_cols=107 Identities=16% Similarity=0.205 Sum_probs=76.4 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc---cChHhh---------------hccCCEEE Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL---VPLDTL---------------CAESDFIF 1015 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~---~~l~el---------------l~~sDvV~ 1015 (1128) -+|.++-|||+|.+|.++|..|...|.+|++||.+..+.+....+... ..++|+ +++||+|+ T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi 88 (431) T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI 88 (431) T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE T ss_pred ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE Confidence 478999999999999999999999999999999876655422222111 133333 35799999 Q ss_pred EecCCCccc--------cccc--CHHHHccCCCCcEEEEcCCCcccCHHHHHHHH Q psy13054 1016 VTCALTKDT--------EQLI--GRKQFSLMKPTAILVNTSRGGLLDQEALVEFL 1060 (1128) Q Consensus 1016 l~lPlt~~T--------~~li--~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL 1060 (1128) +|+|..... ..+. -+...+.|++|+++|+.|.-.+-..+.+.+.+ T Consensus 89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i 143 (431) T 3ojo_A 89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV 143 (431) T ss_dssp ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH T ss_pred EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH Confidence 999955422 1233 23566789999999999988877778877764 |
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
---|
Probab=97.66 E-value=7.4e-05 Score=83.09 Aligned_cols=131 Identities=16% Similarity=0.171 Sum_probs=89.6 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChH--hhhccCCEEEEecCCCcccccccC Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLD--TLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~--ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) +++||++.|||.|. +|+.+|..|...|++|.+++++.. +++ +.+++||+|+.++|. .++|. T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------~l~l~~~~~~ADIVI~Avg~----p~~I~ 225 (300) T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------TEDMIDYLRTADIVIAAMGQ----PGYVK 225 (300) T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------HHHHHHHHHTCSEEEECSCC----TTCBC T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------CchhhhhhccCCEEEECCCC----CCCCc Confidence 58999999999998 699999999999999999975432 355 899999999999995 34677 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHH Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKS 1108 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~ 1108 (1128) ++. +|+|+++|+++.-.+-|.. -++| ++- =||...+ ... ---.+||==||.-.-+..-+. T Consensus 226 ~~~---vk~GavVIDvgi~~~~~~~-----~~~g~kl~---GDVdf~~-------v~~-~a~~iTPVPGGVGpmT~a~Ll 286 (300) T 4a26_A 226 GEW---IKEGAAVVDVGTTPVPDPS-----RKDGYRLV---GDVCFEE-------AAA-RAAWISPVPGGVGPMTIAMLL 286 (300) T ss_dssp GGG---SCTTCEEEECCCEEESCSC-----STTSCEEE---CSBCHHH-------HTT-TCSEEECTTTSSSHHHHHHHH T ss_pred HHh---cCCCcEEEEEeccCCcCCc-----ccCCceee---cCccHHH-------HHh-hceEeCCCCCcChHHHHHHHH Confidence 654 5999999999976654321 0011 222 2553211 011 124688877777666655555 Q ss_pred HHHHHHHHHH Q psy13054 1109 STSAENIIRG 1118 (1128) Q Consensus 1109 ~~~~~nl~~~ 1118 (1128) +-+++..+++ T Consensus 287 ~Ntv~aa~~~ 296 (300) T 4a26_A 287 ENTLEAFKAA 296 (300) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH Confidence 5555444443 |
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
---|
Probab=97.65 E-value=0.00011 Score=81.06 Aligned_cols=79 Identities=19% Similarity=0.188 Sum_probs=67.3 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||.|. +|+++|..|...|++|.+.+++. .+|++.+++||+|+.++|. .++|.++ T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------~~L~~~~~~ADIVI~Avg~----p~~I~~~ 221 (286) T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------RDLADHVSRADLVVVAAGK----PGLVKGE 221 (286) T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHTCSEEEECCCC----TTCBCGG T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------cCHHHHhccCCEEEECCCC----CCCCCHH Confidence 58999999999987 79999999999999999886533 2688999999999999984 3578775 Q ss_pred HHccCCCCcEEEEcCCCcc Q psy13054 1032 QFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l 1050 (1128) . +|+|+++|+++.-.+ T Consensus 222 ~---vk~GavVIDvgi~~~ 237 (286) T 4a5o_A 222 W---IKEGAIVIDVGINRQ 237 (286) T ss_dssp G---SCTTCEEEECCSCSS T ss_pred H---cCCCeEEEEeccccc Confidence 5 499999999987664 |
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
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Probab=97.64 E-value=7.2e-05 Score=80.66 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=71.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128) .+|||||+|.||..+|+.|+..|.+|++|+++ ++ +++|| ++++|.. ....++ .+....+ T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~----------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~l 65 (232) T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP----------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAFA 65 (232) T ss_dssp CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG----------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTTC T ss_pred cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH----------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHhc Confidence 58999999999999999999999999999752 22 57899 8889965 666666 4556678 Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECC Q psy13054 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTP 1094 (1128) Q Consensus 1037 k~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTP 1094 (1128) ++++++|+++ |++ ..+-+..+.+.|. ...+ .||+...+.++.++ T Consensus 66 ~~g~ivvd~s-gs~-~~~vl~~~~~~g~-~fvg-----------~HPm~g~~~~i~a~ 109 (232) T 3dfu_A 66 RRGQMFLHTS-LTH-GITVMDPLETSGG-IVMS-----------AHPIGQDRWVASAL 109 (232) T ss_dssp CTTCEEEECC-SSC-CGGGGHHHHHTTC-EEEE-----------EEEEETTEEEEEES T ss_pred CCCCEEEEEC-CcC-HHHHHHHHHhCCC-cEEE-----------eeeCCCCceeeeCC Confidence 9999999985 221 1122222223332 2221 36777777776665 |
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
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Probab=97.64 E-value=0.00011 Score=81.01 Aligned_cols=111 Identities=19% Similarity=0.275 Sum_probs=83.3 Q ss_pred ccCCCeEEEEEcChh-hHHHHHHHhhC--CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccC Q psy13054 953 GLKGATVGIVGLGNI-GLETAKLLKAF--KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 953 ~L~gktvGIIG~G~I-G~~vA~~l~af--G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) ++.||++.|||.|+| |+.+|+.|... |++|.+++++. .++.+.+++||+|+.+++.. ++|. T Consensus 155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------------~~L~~~~~~ADIVI~Avg~p----~~I~ 218 (281) T 2c2x_A 155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------------RDLPALTRQADIVVAAVGVA----HLLT 218 (281) T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------------SCHHHHHTTCSEEEECSCCT----TCBC T ss_pred CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------------hHHHHHHhhCCEEEECCCCC----cccC Confidence 589999999999985 99999999999 89999886443 37889999999999999843 3688 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHH Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRD 1105 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~ 1105 (1128) ++. +|+|+++|++|.-.+-| | ..=||- ++ ... .--.+||==||.-.-+.. T Consensus 219 ~~~---vk~GavVIDVgi~r~~~----------g----lvGDVd-~~-------v~~-~a~~iTPVPGGVGpmT~a 268 (281) T 2c2x_A 219 ADM---VRPGAAVIDVGVSRTDD----------G----LVGDVH-PD-------VWE-LAGHVSPNPGGVGPLTRA 268 (281) T ss_dssp GGG---SCTTCEEEECCEEEETT----------E----EEESBC-GG-------GGG-TCSEEECSSSSSHHHHHH T ss_pred HHH---cCCCcEEEEccCCCCCC----------C----ccCccc-cc-------hhh-heeeecCCCCCccHHHHH Confidence 766 48999999999877543 3 334774 21 111 123478877776655543 |
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
---|
Probab=97.61 E-value=5.3e-05 Score=80.77 Aligned_cols=106 Identities=18% Similarity=0.212 Sum_probs=72.5 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEE-EeCCCCchh--hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKIL-YTSRRVKEE--GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~-~d~~~~~~~--~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) -++|||||+|+||+.+|+.|...|.+|++ +++...+.+ ....+... .+..+.++++|+|++++| ....+.++.. T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp-~~~~~~v~~~- 100 (220) T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVP-YDSIADIVTQ- 100 (220) T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESC-GGGHHHHHTT- T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCC-hHHHHHHHHH- Confidence 46899999999999999999999999998 776555443 23345543 356677899999999999 3333333321 Q ss_pred HHccCCCCcEEEEcCCCcc-----c-------CHHHHHHHHhcCCc Q psy13054 1032 QFSLMKPTAILVNTSRGGL-----L-------DQEALVEFLKDKKI 1065 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-----V-------de~aL~~aL~~g~i 1065 (1128) +.. .++.++|+++-|-- . ..+.+.+.+...++ T Consensus 101 -l~~-~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~v 144 (220) T 4huj_A 101 -VSD-WGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKV 144 (220) T ss_dssp -CSC-CTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEE T ss_pred -hhc-cCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCE Confidence 222 35889999986541 1 35566666654343 |
>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
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Probab=97.61 E-value=9.6e-05 Score=81.88 Aligned_cols=105 Identities=12% Similarity=0.124 Sum_probs=73.3 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhhhhcCCcc---cChHhhhccCCEEEEecCCC--cccccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEGTALGAQL---VPLDTLCAESDFIFVTCALT--KDTEQL 1027 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~~~~g~~~---~~l~ell~~sDvV~l~lPlt--~~T~~l 1027 (1128) +.||++.|+|.|.+|++++..|...|+ +|.+++++..+.......... .+++++++++|+|++++|.. ++.... T Consensus 115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~ 194 (277) T 3don_A 115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSV 194 (277) T ss_dssp GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCS T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCC Confidence 689999999999999999999999999 899998776654421112222 24667788999999999964 332223 Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ++ .+.++++++++++.-... .+. |+++.++. T Consensus 195 l~---~~~l~~~~~V~D~vY~P~-~T~-ll~~A~~~ 225 (277) T 3don_A 195 IS---LNRLASHTLVSDIVYNPY-KTP-ILIEAEQR 225 (277) T ss_dssp SC---CTTCCSSCEEEESCCSSS-SCH-HHHHHHHT T ss_pred CC---HHHcCCCCEEEEecCCCC-CCH-HHHHHHHC Confidence 43 466789999999987744 344 55444443 |
>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
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Probab=97.60 E-value=0.00011 Score=80.45 Aligned_cols=102 Identities=17% Similarity=0.160 Sum_probs=75.9 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC-CcccChHhhhccCCEEEEecCCC--cccccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG-AQLVPLDTLCAESDFIFVTCALT--KDTEQL 1027 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g-~~~~~l~ell~~sDvV~l~lPlt--~~T~~l 1027 (1128) +.| +++|||.|.+|++++..|...|+ +|.+++++..+.+ ..+.+ ....++.+.++++|+|++++|.. ++ ... T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~~~ 184 (253) T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-ELP 184 (253) T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-CCS T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-CCC Confidence 578 99999999999999999999999 8999987765543 12222 12346778899999999999964 22 224 Q ss_pred cCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ++.+. ++++.+++++.-+ .+.-|.++.+.| T Consensus 185 i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G 214 (253) T 3u62_A 185 VSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG 214 (253) T ss_dssp CCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT T ss_pred CCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC Confidence 55444 4689999999988 566666666665 |
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
---|
Probab=97.59 E-value=0.00015 Score=80.55 Aligned_cols=133 Identities=19% Similarity=0.239 Sum_probs=92.1 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) +++|+++.|||.|+ +|+.+|+.|...|++|.+++++. .++.+.+++||+|+.+++.. ++|.++ T Consensus 162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~p----~~I~~~ 225 (301) T 1a4i_A 162 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------AHLDEEVNKGDILVVATGQP----EMVKGE 225 (301) T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCCT----TCBCGG T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc------------ccHHHHhccCCEEEECCCCc----ccCCHH Confidence 58999999999996 69999999999999999986432 36889999999999999863 468776 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcC-CceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDK-KIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g-~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~ 1110 (1128) . +|+|+++|++|.-.+-|.. -++| ++-| ||-..+ ... ---.+||==||.-.-+..-+.+- T Consensus 226 ~---vk~GavVIDVgi~~~~d~~-----~~~g~klvG---DVdf~~-------v~~-~a~~iTPVPGGVGpmTiamLl~N 286 (301) T 1a4i_A 226 W---IKPGAIVIDCGINYVPDDK-----KPNGRKVVG---DVAYDE-------AKE-RASFITPVPGGVGPMTVAMLMQS 286 (301) T ss_dssp G---SCTTCEEEECCCBC---------------CCBC---SBCHHH-------HTT-TCSEECCSSSSHHHHHHHHHHHH T ss_pred H---cCCCcEEEEccCCCccccc-----ccCCCeeec---cccHHH-------hhh-hceEeCCCCCCccHHHHHHHHHH Confidence 6 4799999999987754321 1233 4433 553211 111 12358998888776666656566 Q ss_pred HHHHHHHHHc Q psy13054 1111 SAENIIRGYK 1120 (1128) Q Consensus 1111 ~~~nl~~~l~ 1120 (1128) +++..++++. T Consensus 287 tv~aa~~~~~ 296 (301) T 1a4i_A 287 TVESAKRFLE 296 (301) T ss_dssp HHHHHHHHHC T ss_pred HHHHHHHHhh Confidence 6655555553 |
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
---|
Probab=97.58 E-value=7e-05 Score=74.41 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=77.5 Q ss_pred cCCCeEEEEEc----ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEEecCCCccccccc Q psy13054 954 LKGATVGIVGL----GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI 1028 (1128) Q Consensus 954 L~gktvGIIG~----G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li 1028 (1128) +.-++|+|||+ |.+|+.+++.|+..|.+|+.+|+..... .|.+.. +++|+....|++++++| .+....++ T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i----~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~ 86 (138) T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA 86 (138) T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE----CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH Confidence 45678999999 9999999999999999988877664221 355544 89999999999999999 67777777 Q ss_pred CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1029 ~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) .+ .. .++.++++++++. ..+++.+..++..+.- T Consensus 87 ~~-~~-~~g~~~i~~~~~~----~~~~l~~~a~~~Gi~~ 119 (138) T 1y81_A 87 KE-AV-EAGFKKLWFQPGA----ESEEIRRFLEKAGVEY 119 (138) T ss_dssp HH-HH-HTTCCEEEECTTS----CCHHHHHHHHHHTCEE T ss_pred HH-HH-HcCCCEEEEcCcc----HHHHHHHHHHHCCCEE Confidence 43 33 4677888887754 2577777777765543 |
>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
---|
Probab=97.58 E-value=0.00015 Score=81.12 Aligned_cols=107 Identities=17% Similarity=0.138 Sum_probs=76.1 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcCC---ccc---ChHhhhccCCEEEEecCCCccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALGA---QLV---PLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g~---~~~---~l~ell~~sDvV~l~lPlt~~T 1024 (1128) +.|++++|+|.|.+|++++..|...|+ +|.+++++..+.+ ....+. ... ++.+.++++|+|++++|..... T Consensus 139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~ 218 (297) T 2egg_A 139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHP 218 (297) T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSS T ss_pred CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCC Confidence 678999999999999999999999998 9999987665543 223332 222 4567789999999999976431 Q ss_pred --cc-ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc Q psy13054 1025 --EQ-LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1025 --~~-li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128) .. .++ .+.+++++++++++-.. ..+. |.+..++..+ T Consensus 219 ~~~~~~i~---~~~l~~~~~v~D~~y~P-~~T~-ll~~A~~~G~ 257 (297) T 2egg_A 219 RVEVQPLS---LERLRPGVIVSDIIYNP-LETK-WLKEAKARGA 257 (297) T ss_dssp CCSCCSSC---CTTCCTTCEEEECCCSS-SSCH-HHHHHHHTTC T ss_pred CCCCCCCC---HHHcCCCCEEEEcCCCC-CCCH-HHHHHHHCcC Confidence 11 233 34578999999998853 3343 6655555433 |
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
---|
Probab=97.55 E-value=7e-05 Score=83.15 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=75.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc-------------ccChHhhhc---cCCEEEEecC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ-------------LVPLDTLCA---ESDFIFVTCA 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~-------------~~~l~ell~---~sDvV~l~lP 1019 (1128) ++|+|||+|.||..+|..|...|.+|.+||++..+.+ ..+.|.. ..+.+++.+ .+|+|++++| T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316) T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec Confidence 4799999999999999999999999999986554433 2222322 123445554 8999999999 Q ss_pred CCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ 1066 (1128) . +.+..++. +....+++++++|+++.|- -..+.+.+.+...++. T Consensus 84 ~-~~~~~v~~-~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi 127 (316) T 2ew2_A 84 A-QQLDAMFK-AIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL 127 (316) T ss_dssp H-HHHHHHHH-HHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE T ss_pred c-ccHHHHHH-HHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE Confidence 4 45665553 4556688999999998653 2346666666554443 |
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
---|
Probab=97.54 E-value=7.6e-05 Score=83.95 Aligned_cols=102 Identities=11% Similarity=0.075 Sum_probs=72.5 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeC--CCCchh-hhhcCC-----------ccc---ChHhhhccCCEEEEecCC Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTS--RRVKEE-GTALGA-----------QLV---PLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~--~~~~~~-~~~~g~-----------~~~---~l~ell~~sDvV~l~lPl 1020 (1128) +|+|||+|.||..+|..|...|.+|.+|++ +..+.+ ..+.+. ... ++.+.++.+|+|++++|. T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (335) T 1txg_A 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST 81 (335) T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCCh Confidence 799999999999999999988999999986 433332 222231 222 566788999999999995 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCc---cc-CHHHHHHHHhc Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGG---LL-DQEALVEFLKD 1062 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~---lV-de~aL~~aL~~ 1062 (1128) . .+..++. .... ++++.++|+++.|- -. ..+.+.+.+.+ T Consensus 82 ~-~~~~v~~-~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~ 124 (335) T 1txg_A 82 D-GVLPVMS-RILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL 124 (335) T ss_dssp G-GHHHHHH-HHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT T ss_pred H-HHHHHHH-HHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH Confidence 4 5555553 3445 88899999998775 11 22445566654 |
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
---|
Probab=97.54 E-value=8.4e-05 Score=83.68 Aligned_cols=90 Identities=17% Similarity=0.170 Sum_probs=68.4 Q ss_pred ccCCCeEEEEEcChh-hHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC---Ccc--------cChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSRRVKEE--GTALG---AQL--------VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~G~I-G~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g---~~~--------~~l~ell~~sDvV~l~l 1018 (1128) ++.|+++.|||.|.| |+.+|+.|.+.|++|.++|++..+.. ....+ ... .++++.+++||+|+.++ T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAt 253 (320) T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV 253 (320) T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECC Confidence 799999999999975 99999999999999999876532211 11111 111 36889999999999999 Q ss_pred CCCcccccc-cCHHHHccCCCCcEEEEcCCCc Q psy13054 1019 ALTKDTEQL-IGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1019 Plt~~T~~l-i~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) +.. ++ |.++. +|+|+++|++|-.. T Consensus 254 g~p----~~vI~~e~---vk~GavVIDVgi~r 278 (320) T 1edz_A 254 PSE----NYKFPTEY---IKEGAVCINFACTK 278 (320) T ss_dssp CCT----TCCBCTTT---SCTTEEEEECSSSC T ss_pred CCC----cceeCHHH---cCCCeEEEEcCCCc Confidence 853 34 77665 48999999998753 |
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
---|
Probab=97.54 E-value=0.00011 Score=85.73 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=76.2 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC------------------cc-cChHhhhccCCEEEEe Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA------------------QL-VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~------------------~~-~~l~ell~~sDvV~l~ 1017 (1128) +|+|||+|.||..+|..|.. |.+|++||....+.+ ..+.+. .. .++.+.++.||+|+++ T Consensus 2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvviia 80 (402) T 1dlj_A 2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIA 80 (402) T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEEC T ss_pred EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEEe Confidence 79999999999999999998 999999987655433 222222 22 2567888999999999 Q ss_pred cCCCc----------ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1018 CALTK----------DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1018 lPlt~----------~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) +|... .+...+ +.... +++++++|+.+.-.+-..+.+.+.+.+. T Consensus 81 vpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~ 134 (402) T 1dlj_A 81 TPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD 134 (402) T ss_dssp CCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS T ss_pred cCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC Confidence 99653 233333 23445 8999999997777776677788777654 |
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
---|
Probab=97.52 E-value=0.00017 Score=82.61 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=77.3 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcC--------------Ccc-cChHhhhccCCEEEEec Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALG--------------AQL-VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g--------------~~~-~~l~ell~~sDvV~l~l 1018 (1128) ..++|+|||.|.+|..+|..|...|.+|.+|+++....+ ..+.+ +.. .++++.++.+|+|++++ T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV 107 (356) T 3k96_A 28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV 107 (356) T ss_dssp CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC T ss_pred cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC Confidence 456899999999999999999999999999987644332 22211 122 37888999999999999 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCcccCH----HHHHHHHh Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ----EALVEFLK 1061 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde----~aL~~aL~ 1061 (1128) |. ...+.++ ++....+++++++|+++-|-..++ +-+.+.+. T Consensus 108 p~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~ 152 (356) T 3k96_A 108 PS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELG 152 (356) T ss_dssp CH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHC T ss_pred CH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcC Confidence 94 4555555 345567889999999988766653 34445454 |
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
---|
Probab=97.51 E-value=0.00011 Score=87.43 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=74.0 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc-------C-------------Ccc-cChHhhhccCCE Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL-------G-------------AQL-VPLDTLCAESDF 1013 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~-------g-------------~~~-~~l~ell~~sDv 1013 (1128) ..+|+|||+|.||..+|..|...|.+|++||....+.+ ..+. + +.. .++++.++.||+ T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478) T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE Confidence 35799999999999999999999999999987654433 1111 1 122 256678899999 Q ss_pred EEEecCCC---------cccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1014 IFVTCALT---------KDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1014 V~l~lPlt---------~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) |++++|.. ...+..+ +.....+++++++|+.|.-.+=..+.+.+.+.+ T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~ 144 (478) T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE 144 (478) T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH T ss_pred EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH Confidence 99999953 2333333 345567899999999984333344445555543 |
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
---|
Probab=97.50 E-value=0.00014 Score=86.54 Aligned_cols=103 Identities=20% Similarity=0.203 Sum_probs=76.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CC-EEEEEeCCCC----chh-hhh---------------------cC-CcccChHhh Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KV-SKILYTSRRV----KEE-GTA---------------------LG-AQLVPLDTL 1007 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~-~Vi~~d~~~~----~~~-~~~---------------------~g-~~~~~l~el 1007 (1128) ++|+|||+|.+|..+|..|... |. +|++||.... +.+ ..+ .+ ....+-.+. T Consensus 19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~ea 98 (478) T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFSR 98 (478) T ss_dssp CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGGG T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHHH Confidence 5899999999999999999999 99 9999998776 332 111 11 122222678 Q ss_pred hccCCEEEEecCCCc--------cccccc--CHHHHccCCCCcEEEEcCCCcccCHHHHHHH Q psy13054 1008 CAESDFIFVTCALTK--------DTEQLI--GRKQFSLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128) Q Consensus 1008 l~~sDvV~l~lPlt~--------~T~~li--~~~~l~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128) ++.||+|++++|... ++..+. -+...+.+++|.++|+.|.-.+-..+.+.+. T Consensus 99 ~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ 160 (478) T 3g79_A 99 ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ 160 (478) T ss_dssp GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH T ss_pred HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH Confidence 899999999999653 232333 2356678999999999998887777777753 |
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
---|
Probab=97.46 E-value=0.0003 Score=83.41 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=76.6 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh-----------cC-----------Cc-ccChHhhhccC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA-----------LG-----------AQ-LVPLDTLCAES 1011 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~-----------~g-----------~~-~~~l~ell~~s 1011 (1128) -++|||||+|.||..+|..+...|.+|++||......+ ..+ .| .. ..++ +.+++| T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463) T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463) T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC Confidence 46899999999999999999999999999987654322 111 01 01 1255 568899 Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128) Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128) |+|+.++|...+.+.-+=++..+.++++++++... .+ +....|.+.++. .-..+++..|. T Consensus 116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snT-s~-~~~~~la~~~~~-~~~~ig~hf~~ 175 (463) T 1zcj_A 116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNT-SA-LNVDDIASSTDR-PQLVIGTHFFS 175 (463) T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC-SS-SCHHHHHTTSSC-GGGEEEEEECS T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCC-CC-cCHHHHHHHhcC-CcceEEeecCC Confidence 99999999765433322234556789999998633 33 344567666543 22345566663 |
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
---|
Probab=97.44 E-value=7.9e-05 Score=74.60 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=77.4 Q ss_pred CCeEEEEEc----ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCH Q psy13054 956 GATVGIVGL----GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 956 gktvGIIG~----G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) -++|+|||+ |++|..+++.|+..|++|+.+|+...-.. -.|.+.. +++|+....|++++++| .+....++.+ T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~--i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~~ 89 (145) T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT--LLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQE 89 (145) T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE--ETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHHH T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc--cCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHHH Confidence 578999999 89999999999999999887776541011 1355543 79999999999999999 5777777742 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) .. ....++++++++.- ++++.+.+++..+... T Consensus 90 -~~-~~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~i 121 (145) T 2duw_A 90 -AI-AIGAKTLWLQLGVI----NEQAAVLAREAGLSVV 121 (145) T ss_dssp -HH-HHTCCEEECCTTCC----CHHHHHHHHTTTCEEE T ss_pred -HH-HcCCCEEEEcCChH----HHHHHHHHHHcCCEEE Confidence 33 36677888876422 6788888887766543 |
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
---|
Probab=97.43 E-value=0.00011 Score=83.36 Aligned_cols=87 Identities=15% Similarity=0.200 Sum_probs=65.9 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcC-----------Ccc-cChHhhhccCCEEEEecCCCc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALG-----------AQL-VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g-----------~~~-~~l~ell~~sDvV~l~lPlt~ 1022 (1128) ..+|+|||+|.||..+|..|...|.+|.+|+++..+.+ ..+.+ +.. .++++ +..+|+|++++| ++ T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~ 91 (335) T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ 91 (335) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH Confidence 35799999999999999999999999999987654433 22323 233 36778 899999999999 46 Q ss_pred ccccccCHHHHccCC-CCcEEEEcCCCc Q psy13054 1023 DTEQLIGRKQFSLMK-PTAILVNTSRGG 1049 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk-~ga~lIN~aRG~ 1049 (1128) .++.++. .++ ++.++|+++-|- T Consensus 92 ~~~~v~~-----~l~~~~~~vv~~~nGi 114 (335) T 1z82_A 92 YIREHLL-----RLPVKPSMVLNLSKGI 114 (335) T ss_dssp GHHHHHT-----TCSSCCSEEEECCCCC T ss_pred HHHHHHH-----HhCcCCCEEEEEeCCC Confidence 6665543 233 789999998773 |
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
---|
Probab=97.43 E-value=0.00018 Score=79.00 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=66.5 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhc---CC----c-ccChHhhhccCCEEEEecCCCccccccc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTAL---GA----Q-LVPLDTLCAESDFIFVTCALTKDTEQLI 1028 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~---g~----~-~~~l~ell~~sDvV~l~lPlt~~T~~li 1028 (1128) +|+|||+|.||..+|..|...|.+|.+|++...+.. .... +. . ..+..+.++.+|+|++++|.. .+..++ T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v~ 80 (291) T 1ks9_A 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDAV 80 (291) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHHH T ss_pred eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHHH Confidence 799999999999999999999999999987665432 1111 11 0 123356778999999999965 455555 Q ss_pred CHHHHccCCCCcEEEEcCCCc Q psy13054 1029 GRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1029 ~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) ++....+++++++|++.-|- T Consensus 81 -~~l~~~l~~~~~vv~~~~g~ 100 (291) T 1ks9_A 81 -KSLASTLPVTTPILLIHNGM 100 (291) T ss_dssp -HHHHTTSCTTSCEEEECSSS T ss_pred -HHHHhhCCCCCEEEEecCCC Confidence 34556788999999986653 |
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
---|
Probab=97.43 E-value=0.00021 Score=89.24 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=78.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh------------hhcC-------------Ccc-cChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG------------TALG-------------AQL-VPLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~------------~~~g-------------~~~-~~l~ell~~ 1010 (1128) ++|||||+|.||..+|..+...|.+|++||......+. .+.| ++. .++ +.+++ T Consensus 315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 393 (715) T 1wdk_A 315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 393 (715) T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG T ss_pred CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC Confidence 57999999999999999999999999999976543321 1122 112 245 67899 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128) ||+|+.++|...+.+.-+=++..+.++++++++..+.+ +....+.+.++. .-...++..|. T Consensus 394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-~~~~ig~hf~~ 454 (715) T 1wdk_A 394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN 454 (715) T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcC-ccceEEEEccC Confidence 99999999988766543334566778999999844333 334456655532 22345666665 |
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
---|
Probab=97.42 E-value=7.8e-05 Score=76.66 Aligned_cols=93 Identities=13% Similarity=0.187 Sum_probs=67.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchh-hhhcCCccc-----C---hHhh--hccCCEEEEecCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEE-GTALGAQLV-----P---LDTL--CAESDFIFVTCAL 1020 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~el--l~~sDvV~l~lPl 1020 (1128) ++.+++++|+|+|.+|+.+|+.|+.. |.+|+++|+...+.. ..+.|+... + +.++ +.++|+|++++|. T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~ 115 (183) T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH 115 (183) T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC Confidence 57788999999999999999999999 999999997765443 334454322 2 3444 6789999999997 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .+.+..++ ..+..+.+...+|..+. T Consensus 116 ~~~~~~~~--~~~~~~~~~~~ii~~~~ 140 (183) T 3c85_A 116 HQGNQTAL--EQLQRRNYKGQIAAIAE 140 (183) T ss_dssp HHHHHHHH--HHHHHTTCCSEEEEEES T ss_pred hHHHHHHH--HHHHHHCCCCEEEEEEC Confidence 65554443 35666776667765433 |
>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
---|
Probab=97.40 E-value=0.00026 Score=81.92 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=77.1 Q ss_pred cccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC-----ch--hhhhcCCcccChHhhhccCCEEEEecCCCccc Q psy13054 952 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV-----KE--EGTALGAQLVPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 952 ~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~-----~~--~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) .-|.||||+|||||.=|.+=|..|+--|++|++--+... +. .+.+.|++..+.+|+.++||+|.+.+|...+. T Consensus 33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~~q~ 112 (491) T 3ulk_A 33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHS 112 (491) T ss_dssp GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGGGHH T ss_pred HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChhhHH Confidence 368999999999999999999999999999887643111 11 25677888889999999999999999965443 Q ss_pred ccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) .++ ++....||+|+.|. .|+|= T Consensus 113 -~vy-~~I~p~lk~G~~L~-faHGF 134 (491) T 3ulk_A 113 -DVV-RTVQPLMKDGAALG-YSHGF 134 (491) T ss_dssp -HHH-HHHGGGSCTTCEEE-ESSCH T ss_pred -HHH-HHHHhhCCCCCEEE-ecCcc Confidence 355 46999999999987 56775 |
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
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Probab=97.39 E-value=0.00015 Score=82.52 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=69.4 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCC-------CEEEEEeCCCC-----chh-hhhc--------------CCcc-cChHhh Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFK-------VSKILYTSRRV-----KEE-GTAL--------------GAQL-VPLDTL 1007 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG-------~~Vi~~d~~~~-----~~~-~~~~--------------g~~~-~~l~el 1007 (1128) .++|+|||+|.||..+|..|...| .+|.+|+++.. ..+ .... ++.. .+++++ T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (354) T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA 87 (354) T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH Confidence 358999999999999999998878 89999987665 322 1111 1222 367888 Q ss_pred hccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcc Q psy13054 1008 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1008 l~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) ++.+|+|++++|. ..++.++. +....+++++++|+++.|-. T Consensus 88 ~~~aD~Vilav~~-~~~~~v~~-~i~~~l~~~~ivv~~~~Gi~ 128 (354) T 1x0v_A 88 AEDADILIFVVPH-QFIGKICD-QLKGHLKANATGISLIKGVD 128 (354) T ss_dssp HTTCSEEEECCCG-GGHHHHHH-HHTTCSCTTCEEEECCCCBC T ss_pred HcCCCEEEEeCCH-HHHHHHHH-HHHhhCCCCCEEEEECCccC Confidence 9999999999994 45555552 44456789999999988754 |
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
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Probab=97.35 E-value=0.00021 Score=76.89 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=71.6 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEE-EEEeCCCCchhhhhcCCcccChHhhh-ccCCEEEEecCCCcccccccCHHHHcc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSK-ILYTSRRVKEEGTALGAQLVPLDTLC-AESDFIFVTCALTKDTEQLIGRKQFSL 1035 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~V-i~~d~~~~~~~~~~~g~~~~~l~ell-~~sDvV~l~lPlt~~T~~li~~~~l~~ 1035 (1128) +|||||+|.||+.+++.+..-|+++ .+||+. .+.. . .+.++++++ .++|+|++++|.. ... +-.... T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~-~~~~--~---~~~~~~~l~~~~~DvVv~~~~~~-~~~----~~~~~~ 70 (236) T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR-GEHE--K---MVRGIDEFLQREMDVAVEAASQQ-AVK----DYAEKI 70 (236) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS-CCCT--T---EESSHHHHTTSCCSEEEECSCHH-HHH----HHHHHH T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC-cchh--h---hcCCHHHHhcCCCCEEEECCCHH-HHH----HHHHHH Confidence 7999999999999999998889997 467654 3221 1 345899999 7999999999943 221 223456 Q ss_pred CCCCcEEEEcCCCcccCH---HHHHHHHhcCC Q psy13054 1036 MKPTAILVNTSRGGLLDQ---EALVEFLKDKK 1064 (1128) Q Consensus 1036 mk~ga~lIN~aRG~lVde---~aL~~aL~~g~ 1064 (1128) ++.|..+|..+-+..-+. +.|.++.++.. T Consensus 71 l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g 102 (236) T 2dc1_A 71 LKAGIDLIVLSTGAFADRDFLSRVREVCRKTG 102 (236) T ss_dssp HHTTCEEEESCGGGGGSHHHHHHHHHHHHHHC T ss_pred HHCCCcEEEECcccCChHHHHHHHHHHHHhcC Confidence 788999999998887766 56777766533 |
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
---|
Probab=97.34 E-value=0.00012 Score=84.12 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=67.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC-------CEEEEEeCCCC-----chh-hhhc--------------CCcc-cChHhhh Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK-------VSKILYTSRRV-----KEE-GTAL--------------GAQL-VPLDTLC 1008 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG-------~~Vi~~d~~~~-----~~~-~~~~--------------g~~~-~~l~ell 1008 (1128) ++|+|||.|.||..+|..|...| .+|.+|+++.. ..+ ..+. ++.. .++++++ T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375) T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375) T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH Confidence 47999999999999999998777 89999987655 332 1111 1222 2677889 Q ss_pred ccCCEEEEecCCCcccccccCHHHHc----cCCCCcEEEEcCCCc Q psy13054 1009 AESDFIFVTCALTKDTEQLIGRKQFS----LMKPTAILVNTSRGG 1049 (1128) Q Consensus 1009 ~~sDvV~l~lPlt~~T~~li~~~~l~----~mk~ga~lIN~aRG~ 1049 (1128) +.+|+|++++| ....+.++. +... .+++++++|+++.|- T Consensus 102 ~~aDvVilav~-~~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~Gi 144 (375) T 1yj8_A 102 NDADLLIFIVP-CQYLESVLA-SIKESESIKIASHAKAISLTKGF 144 (375) T ss_dssp TTCSEEEECCC-HHHHHHHHH-HHTC---CCCCTTCEEEECCCSC T ss_pred cCCCEEEEcCC-HHHHHHHHH-HHhhhhhccCCCCCEEEEeCCcc Confidence 99999999999 456665553 3334 678899999998873 |
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
---|
Probab=97.31 E-value=0.00024 Score=84.06 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=42.5 Q ss_pred cCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCC Q psy13054 307 LGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRG 358 (1128) Q Consensus 307 ~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG 358 (1128) .++...+++++++.+|+|+.+ ..+.++|+.+.|+.||++++++|+||+ T Consensus 307 ~g~dv~~lee~~~~aDvVi~a----tG~~~vl~~e~l~~mk~gaiVvNaG~~ 354 (488) T 3ond_A 307 EGLQVLTLEDVVSEADIFVTT----TGNKDIIMLDHMKKMKNNAIVCNIGHF 354 (488) T ss_dssp TTCEECCGGGTTTTCSEEEEC----SSCSCSBCHHHHTTSCTTEEEEESSST T ss_pred hCCccCCHHHHHHhcCEEEeC----CCChhhhhHHHHHhcCCCeEEEEcCCC Confidence 455667899999999999963 578899999999999999999999998 |
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
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Probab=97.29 E-value=5.2e-05 Score=86.86 Aligned_cols=93 Identities=9% Similarity=0.077 Sum_probs=68.9 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcC--------------Ccc-cChHhhhccCCEEEEecCCC Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALG--------------AQL-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g--------------~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128) +|+|||+|.||..+|..|...|.+|.+||++..+.+ ..+.+ +.. .+++++++.+|+|++++|. T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~- 95 (366) T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 95 (366) T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH- T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh- Confidence 899999999999999999999999999987654333 22211 222 3678889999999999994 Q ss_pred cccccccCHH---HHccCCC-CcEEEEcCCCccc Q psy13054 1022 KDTEQLIGRK---QFSLMKP-TAILVNTSRGGLL 1051 (1128) Q Consensus 1022 ~~T~~li~~~---~l~~mk~-ga~lIN~aRG~lV 1051 (1128) ..++.++... ....+++ ++++|+++.|-.. T Consensus 96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~ 129 (366) T 1evy_A 96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER 129 (366) T ss_dssp HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT T ss_pred HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC Confidence 5566555331 4445678 9999999877544 |
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
---|
Probab=97.27 E-value=0.00011 Score=84.68 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=42.9 Q ss_pred CHHHHhhcCCEEEEec--CCCcccccccCHHHHhcCCCCcEEEEec--CCCccCH Q psy13054 313 PLDTLCAESDFIFVTC--ALTKDTEQLIGRKQFSLMKPTAILINTS--RGGLLDQ 363 (1128) Q Consensus 313 sLdeLl~~SDiVslh~--PLT~~T~~lIn~~~l~~MK~gaiLINta--RG~lVDe 363 (1128) ++++++++||+|+.++ |. ..+.++|+++.++.||||+++||+| +|+.+.. T Consensus 258 ~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~ 311 (381) T 3p2y_A 258 ALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNCEL 311 (381) T ss_dssp HHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT T ss_pred HHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCcccc Confidence 5789999999998764 53 3477899999999999999999998 8888774 |
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
---|
Probab=97.22 E-value=0.00059 Score=85.27 Aligned_cols=114 Identities=18% Similarity=0.118 Sum_probs=77.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hcC-------------Ccc-cChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------ALG-------------AQL-VPLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~g-------------~~~-~~l~ell~~ 1010 (1128) ++|||||.|.||..+|..+...|.+|++||......+ .. +.| ++. .++ +.+++ T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725) T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725) T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC Confidence 6899999999999999999999999999997654332 10 112 111 245 57899 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128) ||+|+.++|...+.+.-+=++..+.++++++++..+.+ +....+.+.++. .-...++..|. T Consensus 392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~ 452 (725) T 2wtb_A 392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFS 452 (725) T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECS T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCC Confidence 99999999987765443334566788999999644333 333455555532 22345666665 |
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
---|
Probab=97.19 E-value=0.00051 Score=68.78 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=64.9 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-hcCCccc-----C---hHhh-hccCCEEEEecCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-ALGAQLV-----P---LDTL-CAESDFIFVTCALT 1021 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-~~g~~~~-----~---l~el-l~~sDvV~l~lPlt 1021 (1128) ...+++|.|+|+|.+|+.+++.|+..|.+|++++++..+.. .. ..+.... + +.+. +..+|+|++++|.. T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~ 95 (155) T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD 95 (155) T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc Confidence 46788999999999999999999999999999997765544 23 3444321 1 2333 67899999999954 Q ss_pred cccccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) ..+.-+ ......+.+...+|-..++. T Consensus 96 ~~~~~~--~~~~~~~~~~~~iv~~~~~~ 121 (155) T 2g1u_A 96 STNFFI--SMNARYMFNVENVIARVYDP 121 (155) T ss_dssp HHHHHH--HHHHHHTSCCSEEEEECSSG T ss_pred HHHHHH--HHHHHHHCCCCeEEEEECCH Confidence 433222 23444455666666666655 |
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
---|
Probab=97.16 E-value=0.00016 Score=83.88 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=43.4 Q ss_pred CHHHHhhcCCEEEEec--CCCcccccccCHHHHhcCCCCcEEEEec--CCCccCHH Q psy13054 313 PLDTLCAESDFIFVTC--ALTKDTEQLIGRKQFSLMKPTAILINTS--RGGLLDQE 364 (1128) Q Consensus 313 sLdeLl~~SDiVslh~--PLT~~T~~lIn~~~l~~MK~gaiLINta--RG~lVDe~ 364 (1128) +|++++++||+|+.++ |.. .+.++|+++.++.||||+++||+| +|+.++.. T Consensus 268 ~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t 322 (405) T 4dio_A 268 LVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGA 322 (405) T ss_dssp HHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTC T ss_pred HHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCcccc Confidence 6899999999998653 432 478999999999999999999999 99988653 |
>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
---|
Probab=97.10 E-value=0.00021 Score=78.22 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=59.4 Q ss_pred CCeEEEEEcccccCccchHHHHHcCCeEEecCCCchHhHHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccCCccCC Q psy13054 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMG 698 (1128) Q Consensus 619 p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~i~~~~~~~r~G~W~~~~~~~~~~~~~~ 698 (1128) +.|.-++...-|+|.|+. +.| +.+|+|++. .+++.++.|. +.+ T Consensus 72 ~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~-----~g~~~~l~~~------------------------~~~ 114 (263) T 2d5c_A 72 DWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA-----PGFLEALKAG------------------------GIP 114 (263) T ss_dssp SEECHHHHHHTCCCEEEE----ETT----EEEEECCHH-----HHHHHHHHHT------------------------TCC T ss_pred HHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH-----HHHHHHHHHh------------------------CCC Confidence 678888888899999976 334 446777765 3555555431 235 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) ++| ++||||+|.+|+.+|+.+..+|+++.+|++. T Consensus 115 l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~ 148 (263) T 2d5c_A 115 LKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRT 148 (263) T ss_dssp CCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSS T ss_pred CCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECC Confidence 789 9999999999999999999999988888864 |
>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
---|
Probab=97.07 E-value=0.0016 Score=73.35 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=66.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CC-CEEEEEeCCCCchh-hhh----cCCc--ccChHhhhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FK-VSKILYTSRRVKEE-GTA----LGAQ--LVPLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG-~~Vi~~d~~~~~~~-~~~----~g~~--~~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) ..++++|||.|.+|+.+++.+.. ++ -+|.+||++ .... ..+ .|+. ..++++++++||+|++|+|.. . T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~---~ 195 (313) T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRST---T 195 (313) T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCS---S T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCC---C Confidence 45789999999999999999875 34 478899877 3333 221 3542 348999999999999999964 3 Q ss_pred cccCHHHHccCCCCcEEEEcCCCc Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) -++.. +.++||+.++.+|... T Consensus 196 pvl~~---~~l~~G~~V~~vGs~~ 216 (313) T 3hdj_A 196 PLFAG---QALRAGAFVGAIGSSL 216 (313) T ss_dssp CSSCG---GGCCTTCEEEECCCSS T ss_pred cccCH---HHcCCCcEEEECCCCC Confidence 46664 4689999999998653 |
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
---|
Probab=97.01 E-value=0.0006 Score=75.65 Aligned_cols=106 Identities=18% Similarity=0.131 Sum_probs=72.8 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC----CcccChHhhhccCCEEEEecCCCcccc- Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG----AQLVPLDTLCAESDFIFVTCALTKDTE- 1025 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g----~~~~~l~ell~~sDvV~l~lPlt~~T~- 1025 (1128) +.||++.|+|.|.+|++++..|...|+ +|.++++...+.+ +.+.+ +...+++++.+++|+|++++|..-... T Consensus 124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~ 203 (281) T 3o8q_A 124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGEL 203 (281) T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC---- T ss_pred ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCC Confidence 789999999999999999999999996 8999987665543 22222 334467777789999999999764321 Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) -.++. +.++++++++++.-.. ..+.-|..|-+.| T Consensus 204 ~~l~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G 237 (281) T 3o8q_A 204 PAIDP---VIFSSRSVCYDMMYGK-GYTVFNQWARQHG 237 (281) T ss_dssp CSCCG---GGEEEEEEEEESCCCS-SCCHHHHHHHHTT T ss_pred CCCCH---HHhCcCCEEEEecCCC-ccCHHHHHHHHCC Confidence 12443 3456788888887654 3444333343333 |
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
---|
Probab=97.01 E-value=0.00042 Score=68.27 Aligned_cols=89 Identities=12% Similarity=0.207 Sum_probs=63.4 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHhh-hccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDTL-CAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~el-l~~sDvV~l~lPlt~~T~ 1025 (1128) ..++.|+|+|.+|+.+|+.|+..|.+|+++|....+.+ ..+.|+... + |.++ +.++|+|++++|...++. T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~ 86 (140) T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG 86 (140) T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH Confidence 35799999999999999999999999999998766544 344555432 1 2221 568999999999776665 Q ss_pred cccCHHHHccCCCCcEEEEcC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~a 1046 (1128) .++ ..+..+.++..+|-.. T Consensus 87 ~~~--~~a~~~~~~~~iiar~ 105 (140) T 3fwz_A 87 EIV--ASARAKNPDIEIIARA 105 (140) T ss_dssp HHH--HHHHHHCSSSEEEEEE T ss_pred HHH--HHHHHHCCCCeEEEEE Confidence 443 3455566666666443 |
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
---|
Probab=97.00 E-value=0.00043 Score=78.37 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=76.1 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc-------------c-cChHhhhccCCEEEEecCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ-------------L-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~-------------~-~~l~ell~~sDvV~l~lPl 1020 (1128) .++|+|||.|.||..+|..|...|.+|.++++. +..+ ..+.|.. . .++++ +..+|+|++++|. T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~ 80 (335) T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA 80 (335) T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc Confidence 468999999999999999999999999999863 3222 3333332 1 25566 5899999999995 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCc------------------ccCHHHHHHHHhcCCceE Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGG------------------LLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~------------------lVde~aL~~aL~~g~i~g 1067 (1128) ..++.++. +.-..+++++++|.+.-|= +-.++.+.+.+...++.+ T Consensus 81 -~~~~~~~~-~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~ 143 (335) T 3ghy_A 81 -PALESVAA-GIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLG 143 (335) T ss_dssp -HHHHHHHG-GGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEE T ss_pred -hhHHHHHH-HHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEE Confidence 56665553 3334567899999998882 223456777776556533 |
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
---|
Probab=96.99 E-value=0.00027 Score=79.11 Aligned_cols=69 Identities=12% Similarity=0.104 Sum_probs=58.8 Q ss_pred CCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 308 GAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 308 g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) |+... +++|++++||+|++++|-...++.+++.+.+..+++|.++||++.....+..++.+.+++..+. T Consensus 52 g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~ 121 (306) T 3l6d_A 52 GAHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH 121 (306) T ss_dssp TCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE T ss_pred CCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe Confidence 55443 8999999999999999987778888875567888999999999999999999999999876543 |
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
---|
Probab=96.99 E-value=0.00066 Score=74.81 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=51.6 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC----CcccChHhhhc-cCCEEEEecCCCc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG----AQLVPLDTLCA-ESDFIFVTCALTK 1022 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g----~~~~~l~ell~-~sDvV~l~lPlt~ 1022 (1128) +.+++++|+|.|.+|++++..|...|.+|.+++++.++.. ....+ +...+++++.+ ++|+|++++|... T Consensus 117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~ 192 (272) T 1p77_A 117 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL 192 (272) T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-- T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC Confidence 6789999999999999999999999999999987765543 22211 22235555544 8999999999654 |
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
---|
Probab=96.99 E-value=0.00013 Score=80.37 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=55.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEE-EEeCCCCchh-h-hhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKI-LYTSRRVKEE-G-TALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi-~~d~~~~~~~-~-~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) .+|||||+|+||+.+++.|... .+|+ +||+...+.. . ...+....+++++++++|+|++++|... .. +.+ T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~-~~-----~v~ 75 (276) T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-IK-----TVA 75 (276) T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-HH-----HHH T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH-HH-----HHH Confidence 3699999999999999999776 7884 7876554433 2 2345422367888899999999999653 22 344 Q ss_pred ccC-CCCcEEEEcCCCc Q psy13054 1034 SLM-KPTAILVNTSRGG 1049 (1128) Q Consensus 1034 ~~m-k~ga~lIN~aRG~ 1049 (1128) ..+ +++.++||++-+- T Consensus 76 ~~l~~~~~ivi~~s~~~ 92 (276) T 2i76_A 76 NHLNLGDAVLVHCSGFL 92 (276) T ss_dssp TTTCCSSCCEEECCSSS T ss_pred HHhccCCCEEEECCCCC Confidence 444 6899999998553 |
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
---|
Probab=96.97 E-value=0.00032 Score=78.13 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=71.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-----C-CEEEEEeCCCCchh-hhh-cCCccc--------------ChHhhhccCCEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-----K-VSKILYTSRRVKEE-GTA-LGAQLV--------------PLDTLCAESDFI 1014 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-----G-~~Vi~~d~~~~~~~-~~~-~g~~~~--------------~l~ell~~sDvV 1014 (1128) .+|+|||+|.||..+|..|... | .+|.+|++ ..+.+ ..+ .|+... +..+.+..+|+| T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 87 (317) T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI 87 (317) T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE Confidence 4799999999999999999887 8 89999986 33222 333 344322 334567899999 Q ss_pred EEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCH-HHHHHHHhcCC Q psy13054 1015 FVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQ-EALVEFLKDKK 1064 (1128) Q Consensus 1015 ~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde-~aL~~aL~~g~ 1064 (1128) ++++|... +..++ +.....++++.++|.+.-| ++. +.+.+.+...+ T Consensus 88 il~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~~~ 134 (317) T 2qyt_A 88 LFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPDTV 134 (317) T ss_dssp EECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCTTT T ss_pred EEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCCCc Confidence 99999553 45454 2344456788999998776 343 55656564433 |
>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
---|
Probab=96.95 E-value=0.0013 Score=75.09 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=66.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHh-hCC-CEEEEEeCCCCchh--hhhc----CC--c-ccChHhhhccCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLK-AFK-VSKILYTSRRVKEE--GTAL----GA--Q-LVPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~-afG-~~Vi~~d~~~~~~~--~~~~----g~--~-~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) ..+++||||.|.+|+.+++.+. ..+ -+|.+||+...+.+ .... ++ . ..+++++++++|+|++++|.. . T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~ 206 (350) T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-A 206 (350) T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-S T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-C Confidence 4578999999999999998774 344 47888887665544 2222 43 2 247899999999999999976 2 Q ss_pred cccccCHHHHccCCCCcEEEEcCCC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) ...++.. +.+++|..++.++.. T Consensus 207 ~~pvl~~---~~l~~G~~V~~vgs~ 228 (350) T 1x7d_A 207 YATIITP---DMLEPGMHLNAVGGD 228 (350) T ss_dssp EEEEECG---GGCCTTCEEEECSCC T ss_pred CCceecH---HHcCCCCEEEECCCC Confidence 3446654 467899999999864 |
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
---|
Probab=96.94 E-value=0.0019 Score=71.00 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=64.5 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC----CcccChHhhh-ccCCEEEEecCCCccccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG----AQLVPLDTLC-AESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g----~~~~~l~ell-~~sDvV~l~lPlt~~T~~ 1026 (1128) +.|+++.|+|.|.+|+++++.|...|.+|++++++..+.. ....+ +...+++++. .++|+|++++|..... . T Consensus 117 l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~-~ 195 (271) T 1nyt_A 117 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG-D 195 (271) T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT-C T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC-C Confidence 6789999999999999999999999999999987655433 22221 1223445554 5899999999965431 1 Q ss_pred c--cCHHHHccCCCCcEEEEcCCCc Q psy13054 1027 L--IGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1027 l--i~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) + ++.+ .++++.+++++.-.. T Consensus 196 ~~~i~~~---~l~~~~~v~D~~y~p 217 (271) T 1nyt_A 196 IPAIPSS---LIHPGIYCYDMFYQK 217 (271) T ss_dssp CCCCCGG---GCCTTCEEEESCCCS T ss_pred CCCCCHH---HcCCCCEEEEeccCC Confidence 1 3322 246788888887654 |
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
---|
Probab=96.90 E-value=0.00059 Score=75.93 Aligned_cols=68 Identities=21% Similarity=0.236 Sum_probs=57.3 Q ss_pred cCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 307 LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 307 ~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) .|++.. +++|+++ ||+|++++|-.+.++..+ ++.++.++++.++||++.........+.+.+++..+. T Consensus 57 ~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~ 125 (296) T 3qha_A 57 AGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIH 125 (296) T ss_dssp TTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE T ss_pred CCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE Confidence 355554 8999999 999999999877778777 6777889999999999999988889999999875443 |
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
---|
Probab=96.89 E-value=0.00054 Score=78.67 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=33.9 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) ++.||||+|+|+|+||+.+|++|..+|++|+++|+. T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~ 205 (364) T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN 205 (364) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCC Confidence 589999999999999999999999999999988864 |
>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
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Probab=96.87 E-value=0.0023 Score=70.62 Aligned_cols=107 Identities=10% Similarity=0.044 Sum_probs=71.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC---CcccChHhhh-ccCCEEEEecCCCcccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG---AQLVPLDTLC-AESDFIFVTCALTKDTE 1025 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g---~~~~~l~ell-~~sDvV~l~lPlt~~T~ 1025 (1128) .+.||++.|+|.|.+|++++..|...|+ +|.++++...+.+ +.+.+ +...+++++- .++|+|+++.|..-... T Consensus 117 ~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~ 196 (272) T 3pwz_A 117 PLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTAD 196 (272) T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTC T ss_pred CccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCC Confidence 3789999999999999999999999996 8989987665543 22222 2334566654 78999999999653211 Q ss_pred -cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1026 -QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1026 -~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) -.++. +.++++.+++++.-.. ..+.-|.+|-+.| T Consensus 197 ~~~i~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G 231 (272) T 3pwz_A 197 LPPLPA---DVLGEAALAYELAYGK-GLTPFLRLAREQG 231 (272) T ss_dssp CCCCCG---GGGTTCSEEEESSCSC-CSCHHHHHHHHHS T ss_pred CCCCCH---HHhCcCCEEEEeecCC-CCCHHHHHHHHCC Confidence 12343 3456777777776553 3344333444443 |
>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
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Probab=96.86 E-value=0.00088 Score=77.30 Aligned_cols=83 Identities=17% Similarity=0.273 Sum_probs=68.9 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCC---EEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCH Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKV---SKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~---~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ..-+|.|||. |..|+.-++.++++|+ .|.++|.+.... |.. + +.++++|+|+.++......-.+|++ T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-----g~~---~-~~i~~aDivIn~vlig~~aP~Lvt~ 283 (394) T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-----GGP---F-DEIPQADIFINCIYLSKPIAPFTNM 283 (394) T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-----CSC---C-THHHHSSEEEECCCCCSSCCCSCCH T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-----CCc---h-hhHhhCCEEEECcCcCCCCCcccCH Confidence 4567999999 9999999999999998 899998553111 222 2 3466999999999987777789999 Q ss_pred HHHccC-CCCcEEEEcC Q psy13054 1031 KQFSLM-KPTAILVNTS 1046 (1128) Q Consensus 1031 ~~l~~m-k~ga~lIN~a 1046 (1128) +.++.| |||+++|++| T Consensus 284 e~v~~m~k~gsVIVDVA 300 (394) T 2qrj_A 284 EKLNNPNRRLRTVVDVS 300 (394) T ss_dssp HHHCCTTCCCCEEEETT T ss_pred HHHhcCcCCCeEEEEEe Confidence 999999 9999999996 |
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
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Probab=96.83 E-value=0.001 Score=62.24 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=50.3 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh-hhhcCCcc--------cChHhhhccCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE-GTALGAQL--------VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~-~~~~g~~~--------~~l~ell~~sDvV~l~lPl 1020 (1128) .+++|+|+|.|.||+.+++.|...| .+|+++++...+.. ....++.. .++.++++.+|+|+.++|. T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~ 79 (118) T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPF 79 (118) T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCG T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCc Confidence 4578999999999999999999999 89999987655433 22233322 1356778899999999874 |
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
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Probab=96.83 E-value=0.0012 Score=74.13 Aligned_cols=103 Identities=19% Similarity=0.261 Sum_probs=70.5 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC-------------cc-cChHhhhccCCEEEEec Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA-------------QL-VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~-------------~~-~~l~ell~~sDvV~l~l 1018 (1128) ...++|+|||.|.||..+|..|...|.+|.+| .+....+ ..+.|. .. .++++ ++.+|+|++++ T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318) T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318) T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc Confidence 45678999999999999999999999999999 5544332 222222 11 24444 58999999999 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHh Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128) |.. .++.++ ++.-..+++++++|.+.-|=- .++.+.+.+. T Consensus 95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~~ 134 (318) T 3hwr_A 95 KST-DTQSAA-LAMKPALAKSALVLSLQNGVE-NADTLRSLLE 134 (318) T ss_dssp CGG-GHHHHH-HHHTTTSCTTCEEEEECSSSS-HHHHHHHHCC T ss_pred ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCC-cHHHHHHHcC Confidence 965 666555 234456788999999977732 2345666664 |
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
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Probab=96.81 E-value=0.0019 Score=62.31 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=58.6 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-hcCCccc-----ChHh----hhccCCEEEEecCCCccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-ALGAQLV-----PLDT----LCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-~~g~~~~-----~l~e----ll~~sDvV~l~lPlt~~T 1024 (1128) +++++|+|+|.+|+.+++.|...|.+|+++|++..... .. ..++... +.+. .+.++|+|++++|....+ T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140) T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140) T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH Confidence 57899999999999999999999999999987654433 22 2244321 2222 267899999999864332 Q ss_pred ccccCHHHHccCCCCcEEEEc Q psy13054 1025 EQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~ 1045 (1128) . .-......++++.+++-+ T Consensus 84 ~--~~~~~~~~~~~~~ii~~~ 102 (140) T 1lss_A 84 L--MSSLLAKSYGINKTIARI 102 (140) T ss_dssp H--HHHHHHHHTTCCCEEEEC T ss_pred H--HHHHHHHHcCCCEEEEEe Confidence 2 112345557777666544 |
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
---|
Probab=96.81 E-value=0.0023 Score=71.94 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=75.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCC---------------cc-cChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGA---------------QL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~---------------~~-~~l~ell~~sDvV~l~lPl 1020 (1128) ++|+|||.|.||..+|..|...|.+|.++++.. .....+.|. .. .+++++.+.+|+|++++|. T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~ 81 (320) T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV 81 (320) T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC Confidence 579999999999999999999999999998754 222222221 11 2566776789999999995 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) . .+..++ +..-..++++.++|.+.-|= -.++.+.+.+...++.+ T Consensus 82 ~-~~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl~ 125 (320) T 3i83_A 82 V-EGADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVIS 125 (320) T ss_dssp C-TTCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEEE T ss_pred C-ChHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEEE Confidence 4 344444 23445678899999988763 33567777776655433 |
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
---|
Probab=96.79 E-value=0.0028 Score=74.46 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=85.8 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhh--------------------cC-Ccc-cChHhhhccCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTA--------------------LG-AQL-VPLDTLCAESD 1012 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~--------------------~g-~~~-~~l~ell~~sD 1012 (1128) +-++|+|||+|.+|..+|..+...|.+|++||....+-+.-. .| .+. .+.++.++.|| T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad 99 (444) T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD 99 (444) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS T ss_pred CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC Confidence 456899999999999999999999999999997654322111 11 122 25778899999 Q ss_pred EEEEecCCCcccccccC--------HHHHccC---CCCcEEEEcCCCcccCHHHHHH-HHhcCCceEEEEe-ccCCCCCC Q psy13054 1013 FIFVTCALTKDTEQLIG--------RKQFSLM---KPTAILVNTSRGGLLDQEALVE-FLKDKKIGGAGLD-VMIPEPLP 1079 (1128) Q Consensus 1013 vV~l~lPlt~~T~~li~--------~~~l~~m---k~ga~lIN~aRG~lVde~aL~~-aL~~g~i~gaaLD-V~e~EPl~ 1079 (1128) ++++|+|......+-.| +..-+.| .++.++|.-|.-.+=.++.+.. .|++.. .+.-.+ ++-+|-+. T Consensus 100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl~ 178 (444) T 3vtf_A 100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFLR 178 (444) T ss_dssp EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCCC T ss_pred ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCccccc Confidence 99999983222222122 1122334 3688999988888766666544 343322 121122 25678776 Q ss_pred CCCc---cccCCCeE Q psy13054 1080 ADHP---LVQLDNCV 1091 (1128) Q Consensus 1080 ~~~p---L~~~pNvi 1091 (1128) +.+. +...|.|+ T Consensus 179 eG~a~~d~~~~~riV 193 (444) T 3vtf_A 179 EGSALEDFFKPDRIV 193 (444) T ss_dssp TTSHHHHHHSCSCEE T ss_pred CCccccccccCCcEE Confidence 6654 34456665 |
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
---|
Probab=96.77 E-value=0.00041 Score=78.20 Aligned_cols=69 Identities=12% Similarity=0.111 Sum_probs=58.0 Q ss_pred CCccc-CHHHHhhcCCEEEEecCCCcccccccCH-HHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 308 GAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR-KQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 308 g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~-~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) |++.. +++|++++||+|++++|-...++.++.. ..++.++++.++|+++.+...+...+.+.+++..+. T Consensus 74 g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~ 144 (320) T 4dll_A 74 GATIHEQARAAARDADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA 144 (320) T ss_dssp TCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE T ss_pred CCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE Confidence 55544 8999999999999999977777777654 566789999999999999999999999999886553 |
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
---|
Probab=96.76 E-value=0.0012 Score=63.93 Aligned_cols=94 Identities=12% Similarity=0.143 Sum_probs=59.8 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-----cC---hHhh-hccCCEEEEecCCCcc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-----VP---LDTL-CAESDFIFVTCALTKD 1023 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-----~~---l~el-l~~sDvV~l~lPlt~~ 1023 (1128) +.++++.|+|+|.+|+.+++.|...|.+|+++|+...+.. ..+.+... .+ ++++ +.++|+|++++|...+ T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144) T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144) T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH Confidence 5678899999999999999999999999999987554332 22223321 12 2333 6789999999986422 Q ss_pred cccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) +. +.-......+.+. .+|-.+.+. T Consensus 84 ~~-~~~~~~~~~~~~~-~ii~~~~~~ 107 (144) T 2hmt_A 84 AS-TLTTLLLKELDIP-NIWVKAQNY 107 (144) T ss_dssp HH-HHHHHHHHHTTCS-EEEEECCSH T ss_pred HH-HHHHHHHHHcCCC-eEEEEeCCH Confidence 21 1222344556665 555554443 |
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
---|
Probab=96.72 E-value=0.0038 Score=69.84 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=73.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc--------------c-cChHhhhccCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ--------------L-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~--------------~-~~l~ell~~sDvV~l~lPlt 1021 (1128) ++|+|||.|.||..+|..|...|.+|.++++.. .....+.|.. . .+.++ +..+|+|++++|.. T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~ 80 (312) T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF 80 (312) T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC Confidence 579999999999999999999999999998754 2223333321 1 13444 67999999999944 Q ss_pred cccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) .++.++. ..-..+++++++|.+.-|= -.++.|.+.+...++.++ T Consensus 81 -~~~~~l~-~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~~ 124 (312) T 3hn2_A 81 -ANSRYEE-LIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIGG 124 (312) T ss_dssp -GGGGHHH-HHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEEE T ss_pred -CcHHHHH-HHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEE Confidence 4444442 3344678899999998772 225667777766565443 |
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
---|
Probab=96.70 E-value=0.0014 Score=71.89 Aligned_cols=106 Identities=12% Similarity=0.146 Sum_probs=69.1 Q ss_pred cCHHHHhh-cCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCC---C Q psy13054 312 VPLDTLCA-ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE---P 387 (1128) Q Consensus 312 vsLdeLl~-~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~E---P 387 (1128) .+++++++ .||+|++++|.. .+..++. +....|+++.++++++.+.....+++.+.+.++.+.+ .-++..| | T Consensus 53 ~~~~~~~~~~aDvVilavp~~-~~~~v~~-~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp 128 (281) T 2g5c_A 53 TSIAKVEDFSPDFVMLSSPVR-TFREIAK-KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGV 128 (281) T ss_dssp SCGGGGGGTCCSEEEECSCHH-HHHHHHH-HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSG T ss_pred CCHHHHhcCCCCEEEEcCCHH-HHHHHHH-HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCCh Confidence 37889999 999999999965 5556664 3456789999999999988766788888887652221 2334333 2 Q ss_pred CCCCCCcccCCCCCCCCcccccccCCCCChhhhHHHHHHHHHH Q psy13054 388 LPADHPLVQLDNCGGAGLDVMIPEPLPADHPLVQLDNCEEFFE 430 (1128) Q Consensus 388 l~~~~pL~~lpNvg~~~~~v~tph~~~~t~~~~~~~n~~~~~~ 430 (1128) ....++++.-+++ +++||.+... -..+.+..+|+ T Consensus 129 ~~a~~~l~~g~~~------~~~~~~~~~~---~~~~~v~~l~~ 162 (281) T 2g5c_A 129 EYSLDNLYEGKKV------ILTPTKKTDK---KRLKLVKRVWE 162 (281) T ss_dssp GGCCSSTTTTCEE------EECCCSSSCH---HHHHHHHHHHH T ss_pred hhhhhHHhCCCCE------EEecCCCCCH---HHHHHHHHHHH Confidence 2233455565556 7788765442 22344455454 |
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
---|
Probab=96.69 E-value=0.0032 Score=73.95 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=60.8 Q ss_pred ccCCCeEEEEEcC---hh-------hHHHHHHHhhCCCEEEEEeCCCCchhhhhc--CCccc-ChHhhhccCCEEEEecC Q psy13054 953 GLKGATVGIVGLG---NI-------GLETAKLLKAFKVSKILYTSRRVKEEGTAL--GAQLV-PLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 953 ~L~gktvGIIG~G---~I-------G~~vA~~l~afG~~Vi~~d~~~~~~~~~~~--g~~~~-~l~ell~~sDvV~l~lP 1019 (1128) .+.|++|+|+|+. ++ ...+++.|+..|++|.+|||.......... .+.++ +++++++.+|.|+++.+ T Consensus 330 ~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~ 409 (444) T 3vtf_A 330 GLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATA 409 (444) T ss_dssp CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSC T ss_pred ccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccC Confidence 5899999999986 22 788999999999999999997644322222 34444 78999999999999887 Q ss_pred CCcccccccCHHHHccCCCCcEEEEc Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) -. +-+.+ | + ++.+++++ T Consensus 410 h~-ef~~l-d------~-~~~vv~D~ 426 (444) T 3vtf_A 410 WP-QYEGL-D------Y-RGKVVVDG 426 (444) T ss_dssp CG-GGGGS-C------C-TTCEEEES T ss_pred CH-HHhCC-C------c-CCCEEEEC Confidence 43 33322 2 2 35677774 |
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
---|
Probab=96.66 E-value=0.0048 Score=68.49 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=64.3 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-++ +|+++|.+|..-++.|.++.++.. +|.+..++||||+.++.-. ++|.++ T Consensus 176 ~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T~------------dl~~~~~~ADIvV~A~G~p----~~i~~d 239 (303) T 4b4u_A 176 EIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQ------------NLPELVKQADIIVGAVGKA----ELIQKD 239 (303) T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------------SHHHHHHTCSEEEECSCST----TCBCGG T ss_pred CCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCCC------------CHHHHhhcCCeEEeccCCC----Cccccc Confidence 58999999999975 599999999999999988865432 6889999999999887643 578765 Q ss_pred HHccCCCCcEEEEcCCC Q psy13054 1032 QFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG 1048 (1128) ..|+|+++|++|-- T Consensus 240 ---~vk~GavVIDVGin 253 (303) T 4b4u_A 240 ---WIKQGAVVVDAGFH 253 (303) T ss_dssp ---GSCTTCEEEECCCB T ss_pred ---cccCCCEEEEecee Confidence 46899999999853 |
>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
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Probab=96.64 E-value=0.0026 Score=71.79 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=63.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhh-CC-CEEEEEeCCCCchh--hhhc-----CCcccChHhhhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKA-FK-VSKILYTSRRVKEE--GTAL-----GAQLVPLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~a-fG-~~Vi~~d~~~~~~~--~~~~-----g~~~~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) ..+++||||.|.+|+.+++.+.. .+ -+|.+||++..+.+ .... .+...++++++ ++|+|++++|... T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~--- 199 (322) T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRK--- 199 (322) T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSS--- T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCC--- Confidence 45789999999999999998876 33 57888887665544 2221 12334788999 9999999999642 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .++.. +.+++|..+++++. T Consensus 200 pv~~~---~~l~~G~~V~~ig~ 218 (322) T 1omo_A 200 PVVKA---EWVEEGTHINAIGA 218 (322) T ss_dssp CCBCG---GGCCTTCEEEECSC T ss_pred ceecH---HHcCCCeEEEECCC Confidence 45653 46789999999953 |
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
---|
Probab=96.63 E-value=0.0015 Score=63.89 Aligned_cols=87 Identities=15% Similarity=0.058 Sum_probs=56.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHhh-hccCCEEEEecCCCccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDTL-CAESDFIFVTCALTKDT 1024 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~el-l~~sDvV~l~lPlt~~T 1024 (1128) .++++.|+|+|.+|+.+|+.|...|.+|+++|....+.. ..+.+.... + +.++ +.++|+|++++|..+.+ T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n 84 (141) T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN 84 (141) T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH Confidence 457899999999999999999999999999997665443 333444321 2 2222 46799999999843332 Q ss_pred ccccCHHHHccCCCCcEEE Q psy13054 1025 EQLIGRKQFSLMKPTAILV 1043 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lI 1043 (1128) +.-......+....+++ T Consensus 85 --~~~~~~a~~~~~~~iia 101 (141) T 3llv_A 85 --LKILKALRSVSDVYAIV 101 (141) T ss_dssp --HHHHHHHHHHCCCCEEE T ss_pred --HHHHHHHHHhCCceEEE Confidence 33334444455333443 |
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
---|
Probab=96.62 E-value=0.0061 Score=70.05 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=74.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCC----CCch---------h-hhhcCC--cccChHhhhccCCEEE Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSR----RVKE---------E-GTALGA--QLVPLDTLCAESDFIF 1015 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~----~~~~---------~-~~~~g~--~~~~l~ell~~sDvV~ 1015 (1128) .+.+.+|.|+|.|..|..+|+.|.+.|. +|+++|+. ..+. . +...+. ...+|.|.++.+|+++ T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlI 268 (388) T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFI 268 (388) T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEE T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEE Confidence 4788999999999999999999999999 89999987 4332 1 111111 1347999999999998 Q ss_pred EecCCCcccccccCHHHHccCCCCcEEEEcCCCcc Q psy13054 1016 VTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1016 l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) -+.. -++|+++.++.|+++++++.+|+... T Consensus 269 G~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~ 298 (388) T 1vl6_A 269 GVSR-----GNILKPEWIKKMSRKPVIFALANPVP 298 (388) T ss_dssp ECSC-----SSCSCHHHHTTSCSSCEEEECCSSSC T ss_pred EeCC-----CCccCHHHHHhcCCCCEEEEcCCCCC Confidence 6632 38999999999999999999998664 |
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
---|
Probab=96.61 E-value=0.0009 Score=73.91 Aligned_cols=68 Identities=10% Similarity=-0.013 Sum_probs=56.2 Q ss_pred CCccc-CHHHHhhcCCEEEEecCCCccccccc--CHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 308 GAQLV-PLDTLCAESDFIFVTCALTKDTEQLI--GRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 308 g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lI--n~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) |++.. +++|+++.||+|++++|-...++..+ +++.++.+++|.++||++.....+...+.+.+++..+ T Consensus 44 g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~ 114 (287) T 3pef_A 44 GAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGG 114 (287) T ss_dssp TCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC T ss_pred CCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCC Confidence 55544 89999999999999999777777766 2455678999999999999998888999999987544 |
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
---|
Probab=96.59 E-value=0.00074 Score=74.59 Aligned_cols=68 Identities=13% Similarity=0.068 Sum_probs=55.8 Q ss_pred CCccc-CHHHHhhcCCEEEEecCCCccccccc--CHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 308 GAQLV-PLDTLCAESDFIFVTCALTKDTEQLI--GRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 308 g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lI--n~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) |++.. +++|+++.||+|++++|-.+.++.++ .+..++.++++.++||++.+...+...+.+.+++..+ T Consensus 44 g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 114 (287) T 3pdu_A 44 GARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGG 114 (287) T ss_dssp TCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTC T ss_pred CCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCC Confidence 55544 89999999999999999776777665 2455678999999999999998888899998887544 |
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
---|
Probab=96.58 E-value=0.00099 Score=74.62 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=56.1 Q ss_pred cCCccc-CHHHHhhcCCEEEEecCCCccccccc--CHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 307 LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLI--GRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 307 ~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lI--n~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) .|++.. +++|+++.||+|++++|-...++.++ .+..+..+++|.++||++....-....+.+.+++..+ T Consensus 63 ~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 134 (310) T 3doj_A 63 HGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGG 134 (310) T ss_dssp TTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC T ss_pred CCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCC Confidence 455544 89999999999999999777777665 2455678999999999999988888899998887544 |
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
---|
Probab=96.52 E-value=0.0041 Score=61.68 Aligned_cols=104 Identities=15% Similarity=0.177 Sum_probs=72.9 Q ss_pred CCCeEEEEEc----ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc-ChHhhhccCCEEEEecCCCcccccccC Q psy13054 955 KGATVGIVGL----GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 955 ~gktvGIIG~----G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) .-++|+|||+ |++|..+++.|+..|++|+..++.....+ -.|.... +++|+-...|++++++|. +....+++ T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~--i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~ 88 (140) T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE--LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP 88 (140) T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE--ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCc--CCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH Confidence 3578999999 89999999999999998666654411111 1355543 799998899999999996 67777774 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +..+ ...++++++.+-. ++++.+..++..+.- T Consensus 89 -~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir~ 120 (140) T 1iuk_A 89 -EVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIPV 120 (140) T ss_dssp -HHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCCE T ss_pred -HHHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCEE Confidence 3333 4445676665432 577777777765543 |
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
---|
Probab=96.45 E-value=0.0023 Score=73.32 Aligned_cols=77 Identities=10% Similarity=0.214 Sum_probs=63.7 Q ss_pred CCccc-CHHHHhhcC---CEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecC Q psy13054 308 GAQLV-PLDTLCAES---DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVM 383 (1128) Q Consensus 308 g~~~v-sLdeLl~~S---DiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVf 383 (1128) |+... +++|+++.+ |+|++++|-. .++.++ ...+..+++|.++|+++.+...+...+.+.+++..+......|+ T Consensus 65 g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVs 142 (358) T 4e21_A 65 GIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTS 142 (358) T ss_dssp TCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEE T ss_pred CCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCC Confidence 45444 899999999 9999999977 777777 56678899999999999999999999999999887766555565 Q ss_pred CCC Q psy13054 384 IPE 386 (1128) Q Consensus 384 e~E 386 (1128) -.+ T Consensus 143 Gg~ 145 (358) T 4e21_A 143 GGI 145 (358) T ss_dssp CGG T ss_pred CCH Confidence 543 |
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
---|
Probab=96.40 E-value=0.0071 Score=67.05 Aligned_cols=104 Identities=12% Similarity=0.048 Sum_probs=69.1 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhhhhcCCccc---ChHhhhccCCEEEEecCCC--cccc-c Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEGTALGAQLV---PLDTLCAESDFIFVTCALT--KDTE-Q 1026 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~~~~g~~~~---~l~ell~~sDvV~l~lPlt--~~T~-~ 1026 (1128) +.|+++.|+|.|.+|++++..|...|+ +|.++++...+.+.....+... ++++ + ++|+|+++.|.. +++. - T Consensus 120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~ 197 (282) T 3fbt_A 120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGES 197 (282) T ss_dssp CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCC T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccC Confidence 689999999999999999999999999 8999987665543211122222 3444 4 899999999963 2211 1 Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) .++.+.| +++.+++++.-... .+.=|..|-+.| T Consensus 198 pi~~~~l---~~~~~v~DlvY~P~-~T~ll~~A~~~G 230 (282) T 3fbt_A 198 PVDKEVV---AKFSSAVDLIYNPV-ETLFLKYARESG 230 (282) T ss_dssp SSCHHHH---TTCSEEEESCCSSS-SCHHHHHHHHTT T ss_pred CCCHHHc---CCCCEEEEEeeCCC-CCHHHHHHHHCc Confidence 2454443 57888888865542 344444444444 |
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
---|
Probab=96.39 E-value=0.0035 Score=70.50 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=55.5 Q ss_pred cCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 307 LGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 307 ~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) .|+ .. +++|++++||+|++++|-......+ .+.+..++++.++|+++.........+.+.+++..+. T Consensus 74 ~g~-~~~s~~e~~~~aDvVi~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~ 141 (317) T 4ezb_A 74 LGV-EPLDDVAGIACADVVLSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGS 141 (317) T ss_dssp TTC-EEESSGGGGGGCSEEEECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCE T ss_pred CCC-CCCCHHHHHhcCCEEEEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe Confidence 355 56 8999999999999999977666654 6667889999999999998888899999999875443 |
>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
---|
Probab=96.37 E-value=0.0042 Score=68.77 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=69.7 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC----------CcccChHhhhccCCEEEEecCCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG----------AQLVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g----------~~~~~l~ell~~sDvV~l~lPlt 1021 (1128) +.||++.|+|.|.||+++|+.|...| +|++++++..+.+ ..+.+ ....++.+.+.++|+|++++|.. T Consensus 126 l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~ 204 (287) T 1nvt_A 126 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG 204 (287) T ss_dssp CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT T ss_pred cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCC Confidence 67899999999999999999999999 9999986654432 11111 11123456778999999999965 Q ss_pred cccc--c-cc-CHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1022 KDTE--Q-LI-GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1022 ~~T~--~-li-~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) .... . .+ + .+.++++++++++.-.. ..+. |.+..++ T Consensus 205 ~~~~~~~~~~~~---~~~l~~~~~v~Dv~y~p-~~t~-ll~~a~~ 244 (287) T 1nvt_A 205 MYPNIDVEPIVK---AEKLREDMVVMDLIYNP-LETV-LLKEAKK 244 (287) T ss_dssp CTTCCSSCCSSC---STTCCSSSEEEECCCSS-SSCH-HHHHHHT T ss_pred CCCCCCCCCCCC---HHHcCCCCEEEEeeeCC-ccCH-HHHHHHH Confidence 4211 0 12 2 35678899999998643 3333 4444443 |
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
---|
Probab=96.37 E-value=0.0058 Score=60.83 Aligned_cols=102 Identities=10% Similarity=0.009 Sum_probs=72.7 Q ss_pred CCeEEEEEc----ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCH Q psy13054 956 GATVGIVGL----GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 956 gktvGIIG~----G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) -++|+|||. |++|..+++.|+..|.+|+..++.. .+. .|... .+++|+....|++++++|. +....+++ T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~--~~i--~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~- 95 (144) T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKY--EEV--LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE- 95 (144) T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTC--SEE--TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH- T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCC--CeE--CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH- Confidence 688999999 7999999999999999876665543 211 35544 3799998899999999995 66666663 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) +..+ ...++++++.+- .++.+.+..++..+.-. T Consensus 96 ~~~~-~gi~~i~~~~g~----~~~~l~~~a~~~Gi~vv 128 (144) T 2d59_A 96 QAIK-KGAKVVWFQYNT----YNREASKKADEAGLIIV 128 (144) T ss_dssp HHHH-HTCSEEEECTTC----CCHHHHHHHHHTTCEEE T ss_pred HHHH-cCCCEEEECCCc----hHHHHHHHHHHcCCEEE Confidence 2333 344566665432 36778888887665543 |
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
---|
Probab=96.25 E-value=0.023 Score=63.45 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=67.5 Q ss_pred ccCCCeEEEEEcC---hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCc------- Q psy13054 953 GLKGATVGIVGLG---NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTK------- 1022 (1128) Q Consensus 953 ~L~gktvGIIG~G---~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~------- 1022 (1128) .+.|++|++||=| ++.+..+..+..||++|.+..|..-.++....| ...+++|.++.+|||..-.-..+ T Consensus 144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g-~~~d~~eav~~aDvvyt~~~q~er~~~~~~ 222 (304) T 3r7f_A 144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFG-TYVSMDEAVESSDVVMLLRIQNERHQSAVS 222 (304) T ss_dssp CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSC-EECCHHHHHHHCSEEEECCCCTTTCCSSCC T ss_pred CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcC-ccCCHHHHhCCCCEEEeccchhhccccchh Confidence 3789999999975 699999999999999998887643333222223 34589999999999987421111 Q ss_pred --c--cccccCHHHHccCCCCcEEEEcC Q psy13054 1023 --D--TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1023 --~--T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) + ...-++.+.++.+|++++|.-+. T Consensus 223 ~~~~~~~y~v~~~~l~~a~~~ai~mHcl 250 (304) T 3r7f_A 223 QEGYLNKYGLTVERAERMKRHAIIMHPA 250 (304) T ss_dssp STTHHHHHSBCHHHHTTSCTTCEEECCS T ss_pred HHHHhCCCccCHHHHhhcCCCCEEECCC Confidence 1 12346888999999999887764 |
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
---|
Probab=96.21 E-value=0.0081 Score=66.61 Aligned_cols=107 Identities=13% Similarity=0.063 Sum_probs=69.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcC-------Ccc---cChHhhhccCCEEEEecC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALG-------AQL---VPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g-------~~~---~~l~ell~~sDvV~l~lP 1019 (1128) .+.||++.|+|.|.+|++++..|...|+ +|.++++...+.+ ..+.+ +.. .++++.++++|+|+++.| T Consensus 124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp 203 (283) T 3jyo_A 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283) T ss_dssp TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSS T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCC Confidence 3789999999999999999999999999 6988887665543 11111 111 267788899999999999 Q ss_pred CCcccc--cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1020 LTKDTE--QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1020 lt~~T~--~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ..-... -.++ .+.++++.+++++.-.. ..+.=|.+|-+.| T Consensus 204 ~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P-~~T~ll~~A~~~G 245 (283) T 3jyo_A 204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYMP-IETELLKAARALG 245 (283) T ss_dssp TTSTTSCSCSSC---GGGCCTTCEEEECCCSS-SSCHHHHHHHHHT T ss_pred CCCCCCCCCCCC---HHHhCCCCEEEEecCCC-CCCHHHHHHHHCc Confidence 642111 1233 23455666666665443 2333333443433 |
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
---|
Probab=96.19 E-value=0.0038 Score=70.30 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=51.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEE-EeCCCCchh--hhhcCCcccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKIL-YTSRRVKEE--GTALGAQLVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~-~d~~~~~~~--~~~~g~~~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .+|||||+|.||+..++.++.. ++++++ +|+...+.. ....++.+.+++++++ +.|+|++++|.. T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~ 74 (331) T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPTD 74 (331) T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCGG T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCch Confidence 4799999999999999999876 788774 665444333 3455666668999998 899999999954 |
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
---|
Probab=96.17 E-value=0.0045 Score=69.57 Aligned_cols=112 Identities=13% Similarity=0.172 Sum_probs=73.1 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhhh--h-----------cCCcc-cChHhhhccCCEEEEecCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEGT--A-----------LGAQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~~--~-----------~g~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) .++|+|||.|.||..+|..|...|. +|++||....+.+.. + ..+.. .++ +.++.||+|+++++. T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317) T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC Confidence 3689999999999999999988888 999999776543311 0 01222 356 778999999999942 Q ss_pred Cc-----------ccccccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHHh--cCCceEE Q psy13054 1021 TK-----------DTEQLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFLK--DKKIGGA 1068 (1128) Q Consensus 1021 t~-----------~T~~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~--~g~i~ga 1068 (1128) .. ++..++. .+.++...|++++|+.+-..-+....+.+... ..++.|. T Consensus 83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~ 145 (317) T 2ewd_A 83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGM 145 (317) T ss_dssp SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHCCCGGGEEES T ss_pred CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhhCCCHHHEEec Confidence 11 1111110 01233345799999999877666667766652 2345554 |
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
---|
Probab=96.15 E-value=0.0011 Score=73.83 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=53.4 Q ss_pred cCHHHHhhcCCEEEEecCCCcccccccC--HHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 312 VPLDTLCAESDFIFVTCALTKDTEQLIG--RKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 312 vsLdeLl~~SDiVslh~PLT~~T~~lIn--~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) .+++|+++.||+|++++|-....+.++. ++.++.++++.++||++.........+.+.+++..+ T Consensus 56 ~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~ 121 (303) T 3g0o_A 56 ASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNL 121 (303) T ss_dssp SSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTC T ss_pred CCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC Confidence 4899999999999999997767776653 445678999999999999988888899999987544 |
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
---|
Probab=96.08 E-value=0.011 Score=66.64 Aligned_cols=134 Identities=22% Similarity=0.115 Sum_probs=88.7 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-----------hhcC--------------Ccc-cChHhhh Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-----------TALG--------------AQL-VPLDTLC 1008 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-----------~~~g--------------~~~-~~l~ell 1008 (1128) -.+|+|||.|.||+.+|..+...|++|++||....... . .+.+ ++. .++++.+ T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~ 85 (319) T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85 (319) T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh Confidence 46899999999999999999999999999997654211 0 0011 111 3678899 Q ss_pred ccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCC Q psy13054 1009 AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD 1088 (1128) Q Consensus 1009 ~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~p 1088 (1128) +.||+|+=++|.+-+.+.=+=++.=+.++++++|-....+ +....|.++++. +=...++=.|-+-| --||.. T Consensus 86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP~~---~m~LVE-- 157 (319) T 3ado_A 86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNPPY---YIPLVE-- 157 (319) T ss_dssp TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSSTT---TCCEEE-- T ss_pred ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCCcc---ccchHH-- Confidence 9999999999988887765445566677999988655544 455677776643 22344444443322 123433 Q ss_pred CeEECCCCCC Q psy13054 1089 NCVLTPHTSS 1098 (1128) Q Consensus 1089 NvilTPHiag 1098 (1128) |+-+|+.+- T Consensus 158 -iv~g~~Ts~ 166 (319) T 3ado_A 158 -LVPHPETSP 166 (319) T ss_dssp -EEECTTCCH T ss_pred -hcCCCCCcH Confidence 566665443 |
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
---|
Probab=96.05 E-value=0.0046 Score=69.19 Aligned_cols=105 Identities=18% Similarity=0.229 Sum_probs=68.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc----------Ch-HhhhccCCEEEEecCCCccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV----------PL-DTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~----------~l-~ell~~sDvV~l~lPlt~~T 1024 (1128) .+|+|||.|.||..+|..|. -|.+|.++++.....+ ..+.|.... +. ++....+|+|++++|. ..+ T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~-~~~ 80 (307) T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQ-HQL 80 (307) T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCG-GGH T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCH-HHH Confidence 57999999999999999999 8999999986544332 333343321 11 3467789999999994 344 Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) ..++ +.++.+.++. +|.+.-|=-. ++.|.+.+...++.+ T Consensus 81 ~~~l--~~l~~~~~~~-ivs~~nGi~~-~e~l~~~~~~~~vl~ 119 (307) T 3ego_A 81 QSVF--SSLERIGKTN-ILFLQNGMGH-IHDLKDWHVGHSIYV 119 (307) T ss_dssp HHHH--HHTTSSCCCE-EEECCSSSHH-HHHHHTCCCSCEEEE T ss_pred HHHH--HHhhcCCCCe-EEEecCCccH-HHHHHHhCCCCcEEE Confidence 4444 3444455667 8888777432 334444444444433 |
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
---|
Probab=96.05 E-value=0.011 Score=65.99 Aligned_cols=105 Identities=25% Similarity=0.313 Sum_probs=68.2 Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEE-EEeCCCCchh--hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKI-LYTSRRVKEE--GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi-~~d~~~~~~~--~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) .+|||||+|.||+. +++.++.. +++++ ++|+...+.. ....|+.. .+++++..+.|+|++++|..... + T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~-----~ 80 (319) T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF-----D 80 (319) T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH-----H T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHH-----H Confidence 47999999999997 88888654 77877 6776665543 33445543 46777767899999999944221 1 Q ss_pred HHHccCCCCc-EEEEc-CCCcccCHHHHHHHHhcCCce Q psy13054 1031 KQFSLMKPTA-ILVNT-SRGGLLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 1031 ~~l~~mk~ga-~lIN~-aRG~lVde~aL~~aL~~g~i~ 1066 (1128) -..+.++.|. +++.- .-..+-+.+.|.++.++..+. T Consensus 81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~ 118 (319) T 1tlt_A 81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT 118 (319) T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe Confidence 2233455565 56552 223344566788877765543 |
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
---|
Probab=96.04 E-value=0.0043 Score=69.39 Aligned_cols=97 Identities=19% Similarity=0.143 Sum_probs=62.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchh--hhhc---------CCcc--cChHhhhccCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEE--GTAL---------GAQL--VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~--~~~~---------g~~~--~~l~ell~~sDvV~l~lPlt 1021 (1128) ++|+|||.|.||..+|..|...| .+|++||....+.. ..+. .+.. .++ +.++.||+|++++|.. T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~ 80 (309) T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI 80 (309) T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc Confidence 47999999999999999998778 68999987654332 1111 1222 356 7789999999999964 Q ss_pred cc---cccccC-----------HHH---HccCCCCcEEEEcCCCcccCHH Q psy13054 1022 KD---TEQLIG-----------RKQ---FSLMKPTAILVNTSRGGLLDQE 1054 (1128) Q Consensus 1022 ~~---T~~li~-----------~~~---l~~mk~ga~lIN~aRG~lVde~ 1054 (1128) .. |.++-. .+. +....+++++|+++-+.=+.+. T Consensus 81 ~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~ 130 (309) T 1hyh_A 81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITA 130 (309) T ss_dssp GGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHH T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHH Confidence 32 011100 122 3333578899988776544333 |
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
---|
Probab=96.04 E-value=0.006 Score=70.64 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=60.4 Q ss_pred CeEEEEEcChhhHHHHHHHhh-CCCEEEEEeCCCC---chhh--hhcC------------C------c-c-cChHhhhcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKA-FKVSKILYTSRRV---KEEG--TALG------------A------Q-L-VPLDTLCAE 1010 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~~~~---~~~~--~~~g------------~------~-~-~~l~ell~~ 1010 (1128) .+|+|||.|.||..+|..|.. -|.+|.+|+.+.. .... ...+ . . . .++++.++. T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404) T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404) T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC Confidence 479999999999999999976 5999999983222 1111 1111 1 1 1 257788899 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEc Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) +|+|++++|.. .++.++ ++.-..+++++++|.. T Consensus 83 aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~ 115 (404) T 3c7a_A 83 ADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL 115 (404) T ss_dssp CSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET T ss_pred CCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc Confidence 99999999954 344444 2334456789999985 |
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
---|
Probab=95.98 E-value=0.0055 Score=69.31 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=49.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEE-EEeCCCCchh--hhhcCCcc-cChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKI-LYTSRRVKEE--GTALGAQL-VPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi-~~d~~~~~~~--~~~~g~~~-~~l~ell~--~sDvV~l~lPlt 1021 (1128) .+|||||+|.||+..++.++.. +++++ ++|+...+.. +...+... .++++++. +.|+|++++|.. T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~ 76 (344) T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTS 76 (344) T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGG T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCch Confidence 4799999999999999999876 78877 4555444333 34456543 48999998 899999999954 |
>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
---|
Probab=95.91 E-value=0.0022 Score=70.70 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=56.9 Q ss_pred CCCeEEEEEcccccCccchHHHHHcCCeEEecCCCchHhHHHHHHHHHHHHHHhhhhhhhhhhcCccccccccccCCccC Q psy13054 618 IKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIM 697 (1128) Q Consensus 618 ~p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~i~~~~~~~r~G~W~~~~~~~~~~~~~ 697 (1128) ++.+.-.+...-++|.|+. +.| +..|+|++.. +++.++.|. +. T Consensus 83 ld~l~~~A~~~gavnti~~----~~g----~~~g~nTd~~-----G~~~~l~~~------------------------~~ 125 (275) T 2hk9_A 83 LDYVEDTAKEIGAVNTVKF----ENG----KAYGYNTDWI-----GFLKSLKSL------------------------IP 125 (275) T ss_dssp CSEECHHHHHHTCCCEEEE----ETT----EEEEECCHHH-----HHHHHHHHH------------------------CT T ss_pred HHHhhHHHHHhCCcceEEe----eCC----EEEeecCCHH-----HHHHHHHHh------------------------CC Confidence 4556666677778888765 334 3356677554 555555431 12 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +++|++++|||.|.+|+++|+.+...|+++.+|++. T Consensus 126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~ 161 (275) T 2hk9_A 126 EVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRT 161 (275) T ss_dssp TGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS T ss_pred CcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECC Confidence 467899999999999999999999999988888864 |
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
---|
Probab=95.91 E-value=0.0056 Score=69.59 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=50.8 Q ss_pred CCeEEEEEcChhhHHHHHHHhhC--CCEEE-EEeCCCCchh--hhhcCCcc-cChHhhhc--cCCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF--KVSKI-LYTSRRVKEE--GTALGAQL-VPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af--G~~Vi-~~d~~~~~~~--~~~~g~~~-~~l~ell~--~sDvV~l~lPlt 1021 (1128) -.+|||||+|.||+..++.++.. +++++ ++|+...+.. ....++.. .++++++. +.|+|++++|.. T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 86 (354) T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSG 86 (354) T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGG T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcH Confidence 35799999999999999999877 78877 5565444433 34456643 48999997 799999999944 |
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
---|
Probab=95.89 E-value=0.0067 Score=67.63 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=62.7 Q ss_pred ccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec Q psy13054 306 ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128) Q Consensus 306 ~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128) +.|++.+ |+.|+.+.||+|++++|-.+..+..+....+..++++.++|+.+=..--+...+.+.+++..+. -+|. T Consensus 46 ~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda 121 (297) T 4gbj_A 46 KLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA 121 (297) T ss_dssp TTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC T ss_pred HcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC Confidence 4466655 8999999999999999987788888888899999999999999887777788888888887664 4553 |
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
---|
Probab=95.89 E-value=0.011 Score=64.46 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=71.3 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) -+..+|+++|+|+||+.+++. . +++++++.. ++.. +.++.. .++++++.+.|+|+=|.+ .+ -+.+.. T Consensus 10 ~~~~rV~i~G~GaIG~~v~~~-~--~leLv~v~~--~k~g--elgv~a~~d~d~lla~pD~VVe~A~-~~----av~e~~ 77 (253) T 1j5p_A 10 HHHMTVLIIGMGNIGKKLVEL-G--NFEKIYAYD--RISK--DIPGVVRLDEFQVPSDVSTVVECAS-PE----AVKEYS 77 (253) T ss_dssp -CCCEEEEECCSHHHHHHHHH-S--CCSEEEEEC--SSCC--CCSSSEECSSCCCCTTCCEEEECSC-HH----HHHHHH T ss_pred cccceEEEECcCHHHHHHHhc-C--CcEEEEEEe--cccc--ccCceeeCCHHHHhhCCCEEEECCC-HH----HHHHHH Confidence 356799999999999999998 4 777765544 3222 226554 379999999999997664 22 234446 Q ss_pred HccCCCCcEEEEcCCCcccCH---HHHHHHHhcCC Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQ---EALVEFLKDKK 1064 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde---~aL~~aL~~g~ 1064 (1128) ...++.|.-+|-+|-|.+.|. +.|.++.++|. T Consensus 78 ~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg 112 (253) T 1j5p_A 78 LQILKNPVNYIIISTSAFADEVFRERFFSELKNSP 112 (253) T ss_dssp HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS T ss_pred HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC Confidence 677889999999999999887 45555555554 |
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
---|
Probab=95.87 E-value=0.0063 Score=69.19 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=50.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEE-EEeCCCCchh--hhhcCCc-ccChHhhh--ccCCEEEEecCCCc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKI-LYTSRRVKEE--GTALGAQ-LVPLDTLC--AESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi-~~d~~~~~~~--~~~~g~~-~~~l~ell--~~sDvV~l~lPlt~ 1022 (1128) .+|||||+|.||+..++.++.. +++++ ++|+...+.. +...++. +.++++++ .+.|+|++++|... T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~ 78 (354) T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDK 78 (354) T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTS T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHH Confidence 4799999999999999999887 88876 4555444333 3445654 35899999 66999999999643 |
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
---|
Probab=95.87 E-value=0.013 Score=65.96 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=67.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCC---CCchh--hhh----cC--Cccc---C---hHhhhccCCEE Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSR---RVKEE--GTA----LG--AQLV---P---LDTLCAESDFI 1014 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~---~~~~~--~~~----~g--~~~~---~---l~ell~~sDvV 1014 (1128) ++.||++.|+|.|.+|++++..|...|+ +|.++++. ..+.+ +.+ .+ +... + +.+.++++|+| T Consensus 151 ~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiI 230 (315) T 3tnl_A 151 DIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIF 230 (315) T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE T ss_pred CccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEE Confidence 3789999999999999999999999999 89999876 33222 111 11 1112 2 45667899999 Q ss_pred EEecCCC--ccc-ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1015 FVTCALT--KDT-EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1015 ~l~lPlt--~~T-~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) +++.|.. +.+ ...+. ..+.++++.+++++.-... .+.=|.+|-+.| T Consensus 231 INaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P~-~T~ll~~A~~~G 279 (315) T 3tnl_A 231 TNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKPT-KTRLLEIAEEQG 279 (315) T ss_dssp EECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSSS-SCHHHHHHHHTT T ss_pred EECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCCC-CCHHHHHHHHCC Confidence 9999964 221 11121 1234567777777755442 333333443333 |
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
---|
Probab=95.84 E-value=0.0091 Score=66.94 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=68.6 Q ss_pred CeEEEEEcChhhHHHHHHHhh--CCCEEEEEeCCCCchhhh----hc-------C--Ccc-cChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKA--FKVSKILYTSRRVKEEGT----AL-------G--AQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~a--fG~~Vi~~d~~~~~~~~~----~~-------g--~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) .+|+|||.|.+|..+|..|.. +|.+|++||....+.+.. .. . +.. .++++ ++.||+|++++|. T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~ 79 (310) T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL 79 (310) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC Confidence 379999999999999999976 689999999876544311 11 1 122 35666 8999999999984 Q ss_pred Cccccccc-------CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE Q psy13054 1021 TKDTEQLI-------GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG 1069 (1128) Q Consensus 1021 t~~T~~li-------~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa 1069 (1128) |...+.. |. +.+....+++.+|+++-.-=+....+.+. +...++.|.+ T Consensus 80 -p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~~~~~~~~~~rviG~g 143 (310) T 1guz_A 80 -PRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVRSGLPKERVIGMA 143 (310) T ss_dssp -CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHHHHHHCSCGGGEEEEC T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHHHHhcCCChHHEEECC Confidence 3332221 11 12223358899999854332222233322 3344666653 |
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
---|
Probab=95.83 E-value=0.009 Score=67.24 Aligned_cols=110 Identities=19% Similarity=0.192 Sum_probs=69.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchhh--hh--c------C--CcccChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEEG--TA--L------G--AQLVPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~--~~--~------g--~~~~~l~ell~~sDvV~l~lPlt~ 1022 (1128) ++|+|||.|.||..+|..|...|. +|+++|....+... .+ . . +...+ .+.++.||+|++++|... T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~ 79 (319) T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ 79 (319) T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC Confidence 379999999999999999988888 99999876543321 11 1 1 11124 356789999999999543 Q ss_pred cccccc--C---------HHH---HccCCCCcEEEEcCCCcccCHHHHHHHH--hcCCceEE Q psy13054 1023 DTEQLI--G---------RKQ---FSLMKPTAILVNTSRGGLLDQEALVEFL--KDKKIGGA 1068 (1128) Q Consensus 1023 ~T~~li--~---------~~~---l~~mk~ga~lIN~aRG~lVde~aL~~aL--~~g~i~ga 1068 (1128) . .++- + .+. +....|++++|+++-+.-+.+..+.+.. ...++.|. T Consensus 80 ~-~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~ 140 (319) T 1a5z_A 80 K-PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS 140 (319) T ss_dssp C-SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee Confidence 2 1110 0 222 3333589999998766544334433333 34466665 |
>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
---|
Probab=95.80 E-value=0.021 Score=67.00 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=77.8 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC---EEEEEe----CC--CCch-h---hh----h----cCC--cccChHhhhcc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV---SKILYT----SR--RVKE-E---GT----A----LGA--QLVPLDTLCAE 1010 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~---~Vi~~d----~~--~~~~-~---~~----~----~g~--~~~~l~ell~~ 1010 (1128) +.++++.|+|.|..|+.+++.|...|+ +++++| ++ ..+. . .. . .+. ...++.+.+++ T Consensus 184 l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~ 263 (439) T 2dvm_A 184 ISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKD 263 (439) T ss_dssp TTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTT T ss_pred ccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhcc Confidence 678999999999999999999999998 799998 55 1111 1 10 0 111 23468899999 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128) +|+|+.+.|..+ +++.++.++.|+++.+++.++... .|.-+.+|.+.|. T Consensus 264 aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~ 312 (439) T 2dvm_A 264 ADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA 312 (439) T ss_dssp CSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC T ss_pred CCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC Confidence 999999988633 467777889999999999995543 4555555555554 |
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
---|
Probab=95.80 E-value=0.0038 Score=68.77 Aligned_cols=62 Identities=10% Similarity=0.095 Sum_probs=51.1 Q ss_pred cCHHHHhhcCCEEEEecCCCcccccccCH--HHHhcCCCCcEEEEecCCCccCHHHHHHHHHcC Q psy13054 312 VPLDTLCAESDFIFVTCALTKDTEQLIGR--KQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 (1128) Q Consensus 312 vsLdeLl~~SDiVslh~PLT~~T~~lIn~--~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG 373 (1128) .+++++++.+|+|++++|-...++.++.. +....++++.++|+++.|...+.+.|.+.+.+. T Consensus 50 ~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 113 (295) T 1yb4_A 50 ETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113 (295) T ss_dssp SSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT T ss_pred CCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc Confidence 37999999999999999977766666642 344578999999999999878888999999873 |
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
---|
Probab=95.78 E-value=0.052 Score=62.06 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=70.0 Q ss_pred cCCCeEEEEEcccccCccchHHHHHcCCeEEec---CCC--c---hHhHHHHHH--HHHHHHHHhhhhhhhhhhcCcccc Q psy13054 617 LIKNLKVITTFSVGYDHLELHEIKARGIRVGSV---GHI--S---SDTVAEYNI--GLAIAVSRRFQEGRKCITSGEWAL 686 (1128) Q Consensus 617 ~~p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~---pg~--~---~~aVAE~ai--~llLa~~R~i~~~~~~~r~G~W~~ 686 (1128) +.+++..+.-.-..+|.-.++++.++||...|. |.- . -+++++.+- +.+++..+- ... +.|+ T Consensus 84 ~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~nt-~~~----~~g~--- 155 (361) T 1pjc_A 84 MQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARFL-ERQ----QGGR--- 155 (361) T ss_dssp CCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHHT-SGG----GTSC--- T ss_pred hcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHHH-hhc----cCCC--- Confidence 357776666666666776788899999999864 532 1 133444333 555555432 211 1221 Q ss_pred ccccccCCccCCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 687 KQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 687 ~~~~~~~~~~~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) + +.++.. .++++++|.|+|.|.+|+.+++.++++|++|+++|++. T Consensus 156 -G-~~l~~l-~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~ 200 (361) T 1pjc_A 156 -G-VLLGGV-PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 200 (361) T ss_dssp -C-CCTTCB-TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH T ss_pred -c-eeccCC-CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH Confidence 0 111111 24788999999999999999999999999999998753 |
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
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Probab=95.77 E-value=0.0082 Score=66.81 Aligned_cols=104 Identities=20% Similarity=0.349 Sum_probs=66.6 Q ss_pred CCeEEEEEcChhhHH-HHHHHhh-CCCEEE-EEeCCCCchh--hhhcCCc-ccChHhhhccCCEEEEecCCCcccccccC Q psy13054 956 GATVGIVGLGNIGLE-TAKLLKA-FKVSKI-LYTSRRVKEE--GTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 956 gktvGIIG~G~IG~~-vA~~l~a-fG~~Vi-~~d~~~~~~~--~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) -.++||||+|.||+. .++.++. -+++++ ++|+...+.. +...++. +.++++++.+.|+|++++|...... + T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~-~-- 82 (308) T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYE-I-- 82 (308) T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHH-H-- T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHH-H-- Confidence 368999999999996 8888876 478887 4665544433 3345554 4589999999999999999443221 1 Q ss_pred HHHHccCCCCc-EEEE-cCCCcccCHHHHHHHHhcCC Q psy13054 1030 RKQFSLMKPTA-ILVN-TSRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1030 ~~~l~~mk~ga-~lIN-~aRG~lVde~aL~~aL~~g~ 1064 (1128) ..+.++.|. +|+. ..--.+-+.+.|.++.++.. T Consensus 83 --~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g 117 (308) T 3uuw_A 83 --IKILLNLGVHVYVDKPLASTVSQGEELIELSTKKN 117 (308) T ss_dssp --HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHT T ss_pred --HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcC Confidence 122333343 4443 23334445666777766543 |
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
---|
Probab=95.73 E-value=0.0073 Score=68.04 Aligned_cols=65 Identities=15% Similarity=0.161 Sum_probs=50.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEE-EeCCCCchh--hhhcCCc--ccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKIL-YTSRRVKEE--GTALGAQ--LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~-~d~~~~~~~--~~~~g~~--~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .+|||||+|.||+..++.++.. ++++++ +|+...+.. ....++. +.++++++. +.|+|++++|.. T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (330) T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQ 78 (330) T ss_dssp EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGG T ss_pred EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCH Confidence 5799999999999999999875 777774 555444433 3445652 458999998 799999999954 |
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
---|
Probab=95.69 E-value=0.008 Score=68.04 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=49.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEE-EeCCCCchh--hhhcCCc--ccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKIL-YTSRRVKEE--GTALGAQ--LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~-~d~~~~~~~--~~~~g~~--~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .+|||||+|.||+..++.++.. ++++++ +|+...+.. ....++. +.++++++. +.|+|++++|.. T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 75 (344) T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTN 75 (344) T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGG T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCc Confidence 3799999999999999999775 778774 565444433 3445653 458999998 899999999954 |
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
---|
Probab=95.68 E-value=0.0088 Score=70.50 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=52.7 Q ss_pred CCCCC-CEEEEEecChhhHHHHHHHhhC------CCeEEEEcCCCcc------ccCchh-----hhHHHHHhhc------ Q psy13054 697 MGLKG-ATVGIVGLGNIGLETAKLLKAF------KVSKILYTSRRVK------EEGQLF-----SLVYDFCRYS------ 752 (1128) Q Consensus 697 ~~l~g-ktvGIiG~G~IG~~va~r~~af------g~~vi~y~~~~~~------~~~~~~-----~~~~~la~~~------ 752 (1128) ..++| |||||||+|+||.++|+.|+.. |++|++++++..+ +.+... .-+.+.++++ T Consensus 49 ~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILa 128 (525) T 3fr7_A 49 EAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLL 128 (525) T ss_dssp HHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEEC T ss_pred HHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEEC Confidence 35899 9999999999999999999987 9998866543221 123221 1266777776 Q ss_pred -CCChhhhhhhhHHHHHHhc-ceEEe Q psy13054 753 -IGGVTIKRLVKKTFILSFG-GLVVT 776 (1128) Q Consensus 753 -pg~~~t~~l~~~~~l~~~~-~~~~~ 776 (1128) |-++.+ .+++ +++..|+ +.+|. T Consensus 129 VP~~~~~-eVl~-eI~p~LK~GaILs 152 (525) T 3fr7_A 129 ISDAAQA-DNYE-KIFSHMKPNSILG 152 (525) T ss_dssp SCHHHHH-HHHH-HHHHHSCTTCEEE T ss_pred CChHHHH-HHHH-HHHHhcCCCCeEE Confidence 544443 4666 6777775 33444 |
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
---|
Probab=95.66 E-value=0.0032 Score=69.83 Aligned_cols=95 Identities=17% Similarity=0.087 Sum_probs=65.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc----cChHhh-hccCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL----VPLDTL-CAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~----~~l~el-l~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ++|+|||.|.||..+|..|...|.+|.++++...... ....|... .+..+. ...+|+|++++|.. .++.++. T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l~- 80 (294) T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVIP- 80 (294) T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHGG- T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHHH- Confidence 5799999999999999999988999999987644322 11223211 133444 48899999999944 5555543 Q ss_pred HHHccCCCCcEEEEcCCCcccCH Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQ 1053 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde 1053 (1128) +.-..++++.++|.+.-|=-..+ T Consensus 81 ~l~~~l~~~~~iv~~~nGi~~~~ 103 (294) T 3g17_A 81 HLTYLAHEDTLIILAQNGYGQLE 103 (294) T ss_dssp GHHHHEEEEEEEEECCSSCCCGG T ss_pred HHHHhhCCCCEEEEeccCcccHh Confidence 23344577889999988854433 |
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
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Probab=95.66 E-value=0.012 Score=58.37 Aligned_cols=92 Identities=10% Similarity=-0.031 Sum_probs=60.1 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc-hh-h---hhcCCcc--------cChHhh-hccCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK-EE-G---TALGAQL--------VPLDTL-CAESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~-~~-~---~~~g~~~--------~~l~el-l~~sDvV~l~lPl 1020 (1128) ..+++.|+|+|.+|+.+++.|...|.+|+++++.... .. . ...++.. ..+.+. +..+|+|+++++. T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153) T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153) T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC Confidence 3568999999999999999999999999999976421 11 1 1223322 124444 7889999999986 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) .+.+. .-......+.+...+|...+. T Consensus 82 d~~n~--~~~~~a~~~~~~~~ii~~~~~ 107 (153) T 1id1_A 82 DADNA--FVVLSAKDMSSDVKTVLAVSD 107 (153) T ss_dssp HHHHH--HHHHHHHHHTSSSCEEEECSS T ss_pred hHHHH--HHHHHHHHHCCCCEEEEEECC Confidence 54433 223445556455555554333 |
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
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Probab=95.66 E-value=0.0037 Score=67.97 Aligned_cols=106 Identities=22% Similarity=0.243 Sum_probs=70.5 Q ss_pred HHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC------------------ Q psy13054 929 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR------------------ 989 (1128) Q Consensus 929 ~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~------------------ 989 (1128) +|.++++-.+|.. .....|.+++|.|||.|.+|..+|+.|...|. ++.++|+.. T Consensus 11 ry~Rq~~l~~~g~-------~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG 83 (249) T 1jw9_B 11 RYNRQIILRGFDF-------DGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVG 83 (249) T ss_dssp HTHHHHTSTTTHH-------HHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTT T ss_pred HhhheecccccCH-------HHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcC Confidence 4555555555641 12236889999999999999999999999997 788888765 Q ss_pred -Cchh-h-h---hc--CCc--c----c---ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEc Q psy13054 990 -VKEE-G-T---AL--GAQ--L----V---PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 990 -~~~~-~-~---~~--g~~--~----~---~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) .+.+ . . +. .+. . . +++++++++|+|+.+++ +.+++.+++....+. +..+|+. T Consensus 84 ~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~ 152 (249) T 1jw9_B 84 QPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG 152 (249) T ss_dssp SBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE T ss_pred cHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe Confidence 3322 1 1 11 111 1 1 24568889999999886 677888887655543 3445554 |
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
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Probab=95.64 E-value=0.011 Score=67.43 Aligned_cols=89 Identities=26% Similarity=0.346 Sum_probs=67.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-hcCCccc----C---hHhhhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-ALGAQLV----P---LDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-~~g~~~~----~---l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .|++|.|+|.|.||...++.++.+|++|++.+....+.+ .. +.|...+ + +.++....|+|+.++...+. T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~-- 264 (366) T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP-- 264 (366) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC-- T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH-- Confidence 588999999999999999999999999999887665544 33 5665432 2 33444568999998875432 Q ss_pred cccCHHHHccCCCCcEEEEcCCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) -...++.|+++..+|+++.. T Consensus 265 ---~~~~~~~l~~~G~iv~~g~~ 284 (366) T 1yqd_A 265 ---LLPLFGLLKSHGKLILVGAP 284 (366) T ss_dssp ---SHHHHHHEEEEEEEEECCCC T ss_pred ---HHHHHHHHhcCCEEEEEccC Confidence 24667888999999998754 |
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
---|
Probab=95.64 E-value=0.017 Score=63.59 Aligned_cols=90 Identities=11% Similarity=0.164 Sum_probs=60.3 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcCCccc-ChHhhhccCCEEEEecCCCcccc----c Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALGAQLV-PLDTLCAESDFIFVTCALTKDTE----Q 1026 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~----~ 1026 (1128) .++++.|||.|.+|+.++..|...|+ +|.+++++..+.+ +...+.... ++. +.++|+|++++|..-... . T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~ 195 (271) T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD 195 (271) T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC Confidence 46899999999999999999999998 7889987665543 333343322 222 478999999999653211 1 Q ss_pred -ccCHHHHccCCCCcEEEEcCCCc Q psy13054 1027 -LIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1027 -li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) -++.+. ++++.+++++.-.. T Consensus 196 ~~~~~~~---l~~~~~v~DlvY~P 216 (271) T 1npy_A 196 LAFPKAF---IDNASVAFDVVAMP 216 (271) T ss_dssp CSSCHHH---HHHCSEEEECCCSS T ss_pred CCCCHHH---cCCCCEEEEeecCC Confidence 133333 34566677776533 |
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
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Probab=95.58 E-value=0.015 Score=66.91 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=49.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh--hhc--CCcccC---hHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG--TAL--GAQLVP---LDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~--~~~--g~~~~~---l~ell~~sDvV~l~ 1017 (1128) -+.||||+|||.|.+|+.+++.++.+|++|+++|+....+.. .+. ...+.+ +.++++++|+|+.. T Consensus 11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~ 82 (389) T 3q2o_A 11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE 82 (389) T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec Confidence 478999999999999999999999999999999977654321 111 011223 67888999998653 |
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
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Probab=95.57 E-value=0.013 Score=65.99 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=48.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEE-EEeCCCCchh--hhhcCCc--ccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKI-LYTSRRVKEE--GTALGAQ--LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi-~~d~~~~~~~--~~~~g~~--~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .++||||+|.||+..++.++.. +++++ ++|+...+.. +...++. +.++++++. +.|+|++++|.. T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (329) T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQ 78 (329) T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGG T ss_pred eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH Confidence 5799999999999999988765 56666 4565555443 3445653 458999998 799999999943 |
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
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Probab=95.54 E-value=0.084 Score=58.84 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=69.9 Q ss_pred ccCCCeEEEEEc---ChhhHHHHHHHhhC-CCEEEEEeCCCCchh---hhhcCCcc---cChHhhhccCCEEEEecCCCc Q psy13054 953 GLKGATVGIVGL---GNIGLETAKLLKAF-KVSKILYTSRRVKEE---GTALGAQL---VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 953 ~L~gktvGIIG~---G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~---~~~~g~~~---~~l~ell~~sDvV~l~lPlt~ 1022 (1128) .+.|++|++||= |++.+..+..+..| |++|.+..|..-.+. ..+.|.+. .+++|.++.+|||..-.=-.+ T Consensus 146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e 225 (299) T 1pg5_A 146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE 225 (299) T ss_dssp CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc Confidence 378999999998 59999999999999 999998876543322 23445443 489999999999987654331 Q ss_pred c------c-----ccccCHHHHccCCCCcEEEEcC Q psy13054 1023 D------T-----EQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1023 ~------T-----~~li~~~~l~~mk~ga~lIN~a 1046 (1128) . - ..-++.+.++.+||+++|.-+. T Consensus 226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l 260 (299) T 1pg5_A 226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 260 (299) T ss_dssp TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS T ss_pred cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC Confidence 1 0 2456888888888888887664 |
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
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Probab=95.51 E-value=0.011 Score=66.19 Aligned_cols=105 Identities=13% Similarity=0.167 Sum_probs=65.3 Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEEEEeCCCCchh--hhhcCCc--ccChHhhh-ccCCEEEEecCCCcccccccC Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKILYTSRRVKEE--GTALGAQ--LVPLDTLC-AESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi~~d~~~~~~~--~~~~g~~--~~~l~ell-~~sDvV~l~lPlt~~T~~li~ 1029 (1128) .+|||||+|.||+. +++.++.. +++++++|+...+.. +...++. +.+..+++ .+.|+|++++|.... . T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h-~---- 77 (323) T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVH-S---- 77 (323) T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGH-H---- T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhH-H---- Confidence 37999999999994 89988765 788887776655443 3445654 34555666 789999999993321 1 Q ss_pred HHHHccCCCCc-EEEEc-CCCcccCHHHHHHHHhcCCce Q psy13054 1030 RKQFSLMKPTA-ILVNT-SRGGLLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 1030 ~~~l~~mk~ga-~lIN~-aRG~lVde~aL~~aL~~g~i~ 1066 (1128) +-..+.++.|. +++.- .--.+-+.+.|.++.++..+. T Consensus 78 ~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~ 116 (323) T 1xea_A 78 TLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP 116 (323) T ss_dssp HHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe Confidence 11223444553 55552 122333455677777665543 |
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
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Probab=95.50 E-value=0.019 Score=61.43 Aligned_cols=92 Identities=18% Similarity=0.117 Sum_probs=63.5 Q ss_pred CcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcCCccc--C-hHhhhccCCEEEEecCCCc Q psy13054 949 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALGAQLV--P-LDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 949 ~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g~~~~--~-l~ell~~sDvV~l~lPlt~ 1022 (1128) |.+..+.|++|.|||.|.+|..-++.|...|++|.++++...... ..+.+++.. + -++.+..+|+|+.+.. .+ T Consensus 24 Pifl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d~ 102 (223) T 3dfz_A 24 TVMLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-DQ 102 (223) T ss_dssp EEEECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-CT T ss_pred ccEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-CH Confidence 445589999999999999999999999999999999988655332 122233322 2 2356778998886544 44 Q ss_pred ccccccCHHHHccCCCCcEEEEcC Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) +. |....+..+ -.++||++ T Consensus 103 ~~----N~~I~~~ak-~gi~VNvv 121 (223) T 3dfz_A 103 AV----NKFVKQHIK-NDQLVNMA 121 (223) T ss_dssp HH----HHHHHHHSC-TTCEEEC- T ss_pred HH----HHHHHHHHh-CCCEEEEe Confidence 42 444444456 56778874 |
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
---|
Probab=95.49 E-value=0.0075 Score=67.60 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=30.4 Q ss_pred hhhhhcCccccccccccCCccCCCCCCEEEEEecChhhHHHHHHHhhCCC-eEEEEcCC Q psy13054 676 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSR 733 (1128) Q Consensus 676 ~~~~r~G~W~~~~~~~~~~~~~~l~gktvGIiG~G~IG~~va~r~~afg~-~vi~y~~~ 733 (1128) .+++|++.|...+++. ..+...-++|||||+|++|+.+|+.+...|. +|.+||+. T Consensus 2 ~~~~~~~~~~~~~~~~---~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~ 57 (312) T 3qsg_A 2 HHHHHHSSGVDLGTEN---LYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA 57 (312) T ss_dssp --------------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS T ss_pred CcccccccccccCccc---ccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC Confidence 4678889887665553 3334456899999999999999999999999 99999985 |
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
---|
Probab=95.48 E-value=0.12 Score=57.78 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=74.4 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--h-hhcCCc-ccChHhhhccCCEEEEecC-C-----C Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--G-TALGAQ-LVPLDTLCAESDFIFVTCA-L-----T 1021 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~-~~~g~~-~~~l~ell~~sDvV~l~lP-l-----t 1021 (1128) .+.|.+|++||= +++.+..+..+..||++|.+..|..-.+. . ....++ ..+++|.++.+|||..-.= . . T Consensus 151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~ 230 (301) T 2ef0_A 151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE 230 (301) T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC------- T ss_pred CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc Confidence 378999999998 89999999999999999999877654332 1 111244 3489999999999997332 0 0 Q ss_pred cc------cccccCHHHHccCCCCcEEEEcC---CCcccCHH Q psy13054 1022 KD------TEQLIGRKQFSLMKPTAILVNTS---RGGLLDQE 1054 (1128) Q Consensus 1022 ~~------T~~li~~~~l~~mk~ga~lIN~a---RG~lVde~ 1054 (1128) ++ ...-++.+.++.+||+++|.-+. ||.=|+.+ T Consensus 231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e 272 (301) T 2ef0_A 231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEE 272 (301) T ss_dssp -CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH T ss_pred hhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHH Confidence 11 12457999999999999999886 56555544 |
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
---|
Probab=95.47 E-value=0.014 Score=64.32 Aligned_cols=101 Identities=14% Similarity=0.070 Sum_probs=68.1 Q ss_pred cCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCCCCCCC Q psy13054 312 VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPAD 391 (1128) Q Consensus 312 vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~EPl~~~ 391 (1128) .++++.++.||+|++++|-+.+.+.-+-++..+.+++++++++.+-+ +...+|.+++..+. ...++..|. T Consensus 77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~~-~~ig~h~~~------- 146 (283) T 4e12_A 77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRGD-KFLALHFAN------- 146 (283) T ss_dssp SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCGG-GEEEEEECS------- T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCCc-ceEEEccCC------- Confidence 48899999999999999988888777777888889999999943333 46788888886532 345666664 Q ss_pred CCcccCCCCCCCCcccccccCCCCChhhhHHHHHHHHHHHH Q psy13054 392 HPLVQLDNCGGAGLDVMIPEPLPADHPLVQLDNCEEFFEEL 432 (1128) Q Consensus 392 ~pL~~lpNvg~~~~~v~tph~~~~t~~~~~~~n~~~~~~~~ 432 (1128) |.+.++.+ .++|+.... .-..+.+..+++.. T Consensus 147 -p~~~~~lv------evv~~~~t~---~~~~~~~~~l~~~~ 177 (283) T 4e12_A 147 -HVWVNNTA------EVMGTTKTD---PEVYQQVVEFASAI 177 (283) T ss_dssp -STTTSCEE------EEEECTTSC---HHHHHHHHHHHHHT T ss_pred -CcccCceE------EEEeCCCCC---HHHHHHHHHHHHHc Confidence 23345555 556653222 22344455555543 |
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
---|
Probab=94.46 E-value=0.0024 Score=67.15 Aligned_cols=86 Identities=14% Similarity=0.073 Sum_probs=59.2 Q ss_pred eeCCCCCCCCccccccCCccccceeeccccccc-ccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCC Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFER-SNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMK 347 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~-~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK 347 (1128) ++|.|.+|+.+++.....+ ..+..+++... +.....+++..++++++++||+|++++|.. .++.++ .++.++ T Consensus 24 iIG~G~mG~~la~~L~~~G---~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~-~~~~v~---~l~~~~ 96 (201) T 2yjz_A 24 IFGTGDFGKSLGLKMLQCG---YSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHRE-HYDFLA---ELADSL 96 (201) Confidence 6789999988877432221 12333443221 111223555568899999999999999964 678877 367788 Q ss_pred CCcEEEEecCCCcc Q psy13054 348 PTAILINTSRGGLL 361 (1128) Q Consensus 348 ~gaiLINtaRG~lV 361 (1128) ++.++||+++|--. T Consensus 97 ~~~ivI~~~~G~~~ 110 (201) T 2yjz_A 97 KGRVLIDVSNNQKM 110 (201) Confidence 99999999999753 |
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
---|
Probab=95.46 E-value=0.01 Score=64.09 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=32.4 Q ss_pred ccCCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc Q psy13054 695 NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 (1128) Q Consensus 695 ~~~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128) ...++.+++|||||+|++|+.+|+++...|.+|++|++... T Consensus 13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~ 53 (245) T 3dtt_A 13 ENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK 53 (245) T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred cccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh Confidence 45578999999999999999999999999999999987533 |
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
---|
Probab=95.43 E-value=0.01 Score=67.57 Aligned_cols=69 Identities=16% Similarity=0.232 Sum_probs=50.6 Q ss_pred ccCCCeEEEEEcChhhH-HHHHHHhhC-CCEEE-EEeCCCCchh--hhhcCCcc-cChHhhhc--cCCEEEEecCCC Q psy13054 953 GLKGATVGIVGLGNIGL-ETAKLLKAF-KVSKI-LYTSRRVKEE--GTALGAQL-VPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~-~vA~~l~af-G~~Vi-~~d~~~~~~~--~~~~g~~~-~~l~ell~--~sDvV~l~lPlt 1021 (1128) .+.-.+|||||+|.||+ .+++.++.. +++++ ++|+...+.. ++..|+.. .++++++. +.|+|++++|.. T Consensus 24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~ 100 (350) T 3rc1_A 24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAV 100 (350) T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGG T ss_pred CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcH Confidence 44556899999999999 788888877 78877 4565444333 34456654 48999997 589999999944 |
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
---|
Probab=95.39 E-value=0.022 Score=64.42 Aligned_cols=114 Identities=16% Similarity=0.196 Sum_probs=72.2 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhh--h---h----c--C--Ccc-cChHhhhccCCEEEEec-- Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG--T---A----L--G--AQL-VPLDTLCAESDFIFVTC-- 1018 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~--~---~----~--g--~~~-~~l~ell~~sDvV~l~l-- 1018 (1128) ..+|+|||.|.+|..+|..|..-|. +|++||....+.+. . . . . ++. .++++.++.||+|+++. T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~ 88 (331) T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL 88 (331) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC Confidence 3589999999999999999988787 89999977654331 1 0 1 1 122 37887899999999999 Q ss_pred CCCccc------ccc-c--C----H---HHHccCCCCcEEEEcCCCcccCHHHHHHHH--hcCCceEEE Q psy13054 1019 ALTKDT------EQL-I--G----R---KQFSLMKPTAILVNTSRGGLLDQEALVEFL--KDKKIGGAG 1069 (1128) Q Consensus 1019 Plt~~T------~~l-i--~----~---~~l~~mk~ga~lIN~aRG~lVde~aL~~aL--~~g~i~gaa 1069 (1128) |..+.- +-- + | . +.+....|++++||.+-..=+....+.+.- ...++.|.+ T Consensus 89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~~~~~~~~~~rviG~g 157 (331) T 1pzg_A 89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMA 157 (331) T ss_dssp SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC T ss_pred CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHHHHhcCCChhcEEecc Confidence 654321 110 0 0 1 123344589999998665444344433332 333555553 |
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
---|
Probab=95.38 E-value=0.015 Score=64.89 Aligned_cols=112 Identities=17% Similarity=0.216 Sum_probs=70.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhhc--C------Cccc-ChHhhhccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTAL--G------AQLV-PLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~~--g------~~~~-~l~ell~~sDvV~l~lPlt~~ 1023 (1128) ++|+|||.|.+|..+|..+...|. +|+++|....+.. ..+. . .+.. +-.+.++.||+|+++.+.... T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~~ 80 (304) T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQK 80 (304) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC----- T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCCC Confidence 479999999999999999988888 9999987654322 1111 1 1111 223578999999999953221 Q ss_pred -----------cccccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1024 -----------TEQLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1024 -----------T~~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) +..++. .+.++...|++++|+++-+.-+....+.+.....++.|. T Consensus 81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~ 138 (304) T 2v6b_A 81 PGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS 138 (304) T ss_dssp -------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC T ss_pred CCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC Confidence 111110 023344468999999877665555556666555566555 |
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
---|
Probab=95.35 E-value=0.0041 Score=68.71 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=70.7 Q ss_pred eeeeCCCCCCCCccccccCCccccceeecccccccc--cccccCCcc-cCHHHHhhcCCEEEEecCCCcccccccC--HH Q psy13054 267 EFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS--NGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIG--RK 341 (1128) Q Consensus 267 ~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~--~~~~~g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn--~~ 341 (1128) +.++|.|.+|+.+++.....+ ..+..+++.+.. ...+.|++. .+++++++.+|+|++++|-...++.++. ++ T Consensus 8 i~iiG~G~~G~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~ 84 (299) T 1vpd_A 8 VGFIGLGIMGKPMSKNLLKAG---YSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG 84 (299) T ss_dssp EEEECCSTTHHHHHHHHHHTT---CEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC T ss_pred EEEECchHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcch Confidence 347788888887766421111 233444432211 112225544 3899999999999999997777777763 24 Q ss_pred HHhcCCCCcEEEEecCCCccCHHHHHHHHHcC Q psy13054 342 QFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 (1128) Q Consensus 342 ~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG 373 (1128) ..+.++++.++||++.|...+.+.|.+.+.+. T Consensus 85 l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 116 (299) T 1vpd_A 85 IIEGAKPGTVLIDMSSIAPLASREISDALKAK 116 (299) T ss_dssp HHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT T ss_pred HhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc Confidence 45678999999999999877788899998874 |
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
---|
Probab=95.35 E-value=0.017 Score=65.84 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=50.2 Q ss_pred CCeEEEEEcChhhHHHHHHHhhC-CCEEEEE-eCCCCchh-hhhcCCcc-cChHhhhc--cCCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF-KVSKILY-TSRRVKEE-GTALGAQL-VPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af-G~~Vi~~-d~~~~~~~-~~~~g~~~-~~l~ell~--~sDvV~l~lPlt 1021 (1128) -.+|||||+|.||+..++.++.. +++++++ |+...+.. +...|+.. .++++++. +.|+|++++|.. T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~ 76 (359) T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPND 76 (359) T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGG T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcH Confidence 35799999999999999999887 7887754 54433333 34456643 48999998 789999999954 |
>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
---|
Probab=95.33 E-value=0.009 Score=71.08 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=61.5 Q ss_pred cCHHHHhh---cCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecCCCC Q psy13054 312 VPLDTLCA---ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE 386 (1128) Q Consensus 312 vsLdeLl~---~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVfe~E 386 (1128) .+++|+++ .||+|++++|-.+.++.++ ++.+..|++|.++|+++.+...|...+.+.|++..+.....-|.-.| T Consensus 57 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~ 133 (484) T 4gwg_A 57 QSLKEMVSKLKKPRRIILLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGE 133 (484) T ss_dssp SSHHHHHHTBCSSCEEEECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHH T ss_pred CCHHHHHhhccCCCEEEEecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCH Confidence 48999987 4999999999888888887 56778899999999999999999999999999876665554554443 |
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
---|
Probab=95.32 E-value=0.17 Score=56.68 Aligned_cols=94 Identities=14% Similarity=0.114 Sum_probs=69.5 Q ss_pred ccCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh--h----h----hcCCc---ccChHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE--G----T----ALGAQ---LVPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~----~----~~g~~---~~~l~ell~~sDvV~l~ 1017 (1128) .+.|++|++||=| ++.+..+..+..||++|.+..|..-.+. . + +.|.. ..+++|.++.+|||..- T Consensus 145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~ 224 (307) T 2i6u_A 145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD 224 (307) T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC T ss_pred CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec Confidence 3789999999986 9999999999999999999887653322 1 1 34533 24899999999999983 Q ss_pred cC-------CCcc-----cccccCHHHHccCCCCcEEEEcC Q psy13054 1018 CA-------LTKD-----TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1018 lP-------lt~~-----T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .= ..++ ...-++++.++.+||+++|.-+. T Consensus 225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l 265 (307) T 2i6u_A 225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCL 265 (307) T ss_dssp CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECS T ss_pred ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCC Confidence 32 0111 12346888999999999888774 |
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
---|
Probab=95.30 E-value=0.0059 Score=67.47 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=53.2 Q ss_pred CCcc-cCHHHHhhcCCEEEEecCCCcccccccC--HHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcC Q psy13054 308 GAQL-VPLDTLCAESDFIFVTCALTKDTEQLIG--RKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 (1128) Q Consensus 308 g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn--~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG 373 (1128) |+.. .+++++++.+|+|++++|-...++.++. ++....++++.++|+++.|...+.+.|.+.+.+. T Consensus 47 g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~ 115 (301) T 3cky_A 47 GAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK 115 (301) T ss_dssp TCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT T ss_pred CCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc Confidence 4443 3799999999999999998777777774 3455678999999999998866788899888764 |
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
---|
Probab=95.25 E-value=0.0056 Score=67.08 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=66.6 Q ss_pred eeCCCCCCCCccccccCCccccceeecccccccc--cccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcC Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS--NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 346 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~--~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~M 346 (1128) ++|.|.+|+.+++.... + ..+..+++.... ...+.|+...+++++++.+|+|++++|....+..++ ++..+.+ T Consensus 6 iiG~G~~G~~~a~~l~~-g---~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~~l 80 (289) T 2cvz_A 6 FIGLGAMGYPMAGHLAR-R---FPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL 80 (289) T ss_dssp EECCSTTHHHHHHHHHT-T---SCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC T ss_pred EEcccHHHHHHHHHHhC-C---CeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHH-HHHHhhC Confidence 56777777776653221 1 123333332111 111124444447788999999999999766677666 4445678 Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHcC Q psy13054 347 KPTAILINTSRGGLLDQEALVEFLKDK 373 (1128) Q Consensus 347 K~gaiLINtaRG~lVDe~AL~~AL~sG 373 (1128) +++.++|+++.+...+.+.|.+.+.+. T Consensus 81 ~~~~~vv~~s~~~~~~~~~l~~~~~~~ 107 (289) T 2cvz_A 81 REGTYWVDATSGEPEASRRLAERLREK 107 (289) T ss_dssp CTTEEEEECSCCCHHHHHHHHHHHHTT T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHc Confidence 999999999999888888999999874 |
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
---|
Probab=95.23 E-value=0.0074 Score=67.45 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=60.1 Q ss_pred ccCCccc-CHHHHhhcCCEEEEecCCCcccccccCH--HHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec Q psy13054 306 ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGR--KQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128) Q Consensus 306 ~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~--~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128) +.|++.+ |+.|+.+.||+|++++|-.+..+..+.. ..++.+++|.++|+.+=..--+...+.+.+++.-+. -+|. T Consensus 44 ~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa 121 (300) T 3obb_A 44 AAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA 121 (300) T ss_dssp HTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC T ss_pred HcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec Confidence 3466655 8999999999999999988887766633 367889999999999988888889999999987653 4664 |
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
---|
Probab=95.19 E-value=0.017 Score=64.81 Aligned_cols=64 Identities=16% Similarity=0.278 Sum_probs=47.2 Q ss_pred eEEEEEcChhhHHH-HHHHhhCCCEEE-EEeCCCCchh--hhhcCCc--ccChHhhhc--cCCEEEEecCCC Q psy13054 958 TVGIVGLGNIGLET-AKLLKAFKVSKI-LYTSRRVKEE--GTALGAQ--LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 958 tvGIIG~G~IG~~v-A~~l~afG~~Vi-~~d~~~~~~~--~~~~g~~--~~~l~ell~--~sDvV~l~lPlt 1021 (1128) +|||||+|.||+.. ++.+..-+++++ ++|+...+.. ....++. +.+++++++ +.|+|++++|.. T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~ 73 (332) T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNE 73 (332) T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGG T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChh Confidence 69999999999998 777766788876 4565444333 3345653 458999987 499999999943 |
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
---|
Probab=95.13 E-value=0.14 Score=57.32 Aligned_cols=94 Identities=13% Similarity=0.171 Sum_probs=66.2 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCch--h--hhhcCCc---ccChHhhhccCCEEEEec----CC Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKE--E--GTALGAQ---LVPLDTLCAESDFIFVTC----AL 1020 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~--~--~~~~g~~---~~~l~ell~~sDvV~l~l----Pl 1020 (1128) .+.|++|++||= +++.+..+..+..||++|.+..|..-.+ . .++.|.. ..+++|.++.+|||..-. .. T Consensus 151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~ 230 (309) T 4f2g_A 151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF 230 (309) T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC----- T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc Confidence 378999999997 5788888888999999998887643222 1 1122332 248999999999998743 11 Q ss_pred ---Ccc-----cccccCHHHHccCCCCcEEEEcC Q psy13054 1021 ---TKD-----TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1021 ---t~~-----T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .++ ...-++.+.++.+|++++|.-+. T Consensus 231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l 264 (309) T 4f2g_A 231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCL 264 (309) T ss_dssp -------CCSGGGGCBCHHHHTTSCTTCEEEECS T ss_pred hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC Confidence 000 12457999999999999998774 |
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
---|
Probab=95.12 E-value=0.021 Score=65.67 Aligned_cols=151 Identities=15% Similarity=0.161 Sum_probs=98.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC----Cc-h--h------hhhcC--CcccChHhhhccCCEEEE Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR----VK-E--E------GTALG--AQLVPLDTLCAESDFIFV 1016 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~----~~-~--~------~~~~g--~~~~~l~ell~~sDvV~l 1016 (1128) .+...+|.|+|.|..|..+|+.+.++|. +|+++|+.. .+ . . +.... -...+|+|.++.+|+++= T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG 264 (398) T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIG 264 (398) T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEE T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEe Confidence 4778899999999999999999999999 999999762 11 1 0 11111 013469999999999885 Q ss_pred ecCCCcccccccCHHHHccCCCCcEEEEcCCCcc-cCHHHHHHHHhcCC-ceEEEEeccCCCCCCCCCccccCCCeEECC Q psy13054 1017 TCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL-LDQEALVEFLKDKK-IGGAGLDVMIPEPLPADHPLVQLDNCVLTP 1094 (1128) Q Consensus 1017 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~l-Vde~aL~~aL~~g~-i~gaaLDV~e~EPl~~~~pL~~~pNvilTP 1094 (1128) . ++-++|+++.++.|+++++++-+|+... +..+..+ +.|+ |.+.| .+ +.| =+.-|+++-| T Consensus 265 ~-----Sapgl~T~EmVk~Ma~~pIIfalsNPt~E~~pe~a~---~~g~~i~atG------rs---~~p-~Q~NN~~~FP 326 (398) T 2a9f_A 265 V-----SAPGVLKAEWISKMAARPVIFAMANPIPEIYPDEAL---EAGAYIVGTG------RS---DFP-NQINNVLAFP 326 (398) T ss_dssp C-----CSTTCCCHHHHHTSCSSCEEEECCSSSCSSCHHHHH---TTTCSEEEES------CT---TSS-SBCCGGGTHH T ss_pred c-----CCCCCCCHHHHHhhCCCCEEEECCCCCccCCHHHHH---HhCCeEEEeC------CC---CCC-CcCCceeEcc Confidence 4 2358999999999999999999999764 2333333 3355 33332 11 111 2445676666 Q ss_pred CCCCCcH-----HHHHHHHHHHHHHHHHHHcC Q psy13054 1095 HTSSATK-----AVRDEKSSTSAENIIRGYKG 1121 (1128) Q Consensus 1095 Hiag~t~-----e~~~~~~~~~~~nl~~~l~G 1121 (1128) =++-..- ...++|...+++-|.....- T Consensus 327 gi~~Gal~~~a~~I~d~m~~aAa~alA~~~~~ 358 (398) T 2a9f_A 327 GIFRGALDARAKTITVEMQIAAAKGIASLVPD 358 (398) T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHTCSS T ss_pred hHHHHHHHcCCcCCCHHHHHHHHHHHHhcCCc Confidence 4332111 12245666666666665543 |
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
---|
Probab=95.05 E-value=0.014 Score=68.02 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=63.8 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHhh-hccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDTL-CAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~el-l~~sDvV~l~lPlt~~T~ 1025 (1128) +.+|.|+|+|++|+.+++.|+..|..|++.|....... ....|+... + |.++ +.++|+|++++|..+.+. T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~ 83 (413) T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL 83 (413) T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH Confidence 45699999999999999999999999999997766544 444455332 2 3333 678999999999665544 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .+ ......+.|...+|--++ T Consensus 84 ~i--~~~ar~~~p~~~Iiara~ 103 (413) T 3l9w_A 84 QL--TEMVKEHFPHLQIIARAR 103 (413) T ss_dssp HH--HHHHHHHCTTCEEEEEES T ss_pred HH--HHHHHHhCCCCeEEEEEC Confidence 33 345566667755554433 |
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
---|
Probab=95.04 E-value=0.023 Score=64.78 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=50.5 Q ss_pred cCCCeEEEEEcChhhHHHHHHHh-h-CCCEEE-EEeCCCCchh--hhhcC--Cc-ccChHhhhc--cCCEEEEecCCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLK-A-FKVSKI-LYTSRRVKEE--GTALG--AQ-LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~-a-fG~~Vi-~~d~~~~~~~--~~~~g--~~-~~~l~ell~--~sDvV~l~lPlt 1021 (1128) +.-.+|||||+|.||+..++.+. . -+++++ ++|+...+.. +...+ .. +.++++++. +.|+|++++|.. T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 98 (357) T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNE 98 (357) T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGG T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcH Confidence 34468999999999999999987 4 378877 4666655543 34455 33 458999997 489999999954 |
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
---|
Probab=94.99 E-value=0.024 Score=63.67 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=43.9 Q ss_pred cCHHH-HhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHc Q psy13054 312 VPLDT-LCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372 (1128) Q Consensus 312 vsLde-Ll~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128) .++++ ++++||+|++++|... +..++ ++....+++++++++++-....-.+++.+.+.. T Consensus 85 ~~~~~~~~~~aDvVilavp~~~-~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~ 144 (314) T 3ggo_A 85 TSIAKVEDFSPDFVMLSSPVRT-FREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK 144 (314) T ss_dssp SCTTGGGGGCCSEEEECSCGGG-HHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG T ss_pred CCHHHHhhccCCEEEEeCCHHH-HHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC Confidence 47888 8999999999999653 44455 455567999999999976654445666666654 |
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
---|
Probab=94.98 E-value=0.026 Score=63.64 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=68.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhh-----hh----c--C--Ccc-cChHhhhccCCEEEEec--C Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG-----TA----L--G--AQL-VPLDTLCAESDFIFVTC--A 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~-----~~----~--g--~~~-~~l~ell~~sDvV~l~l--P 1019 (1128) ++|+|||.|.+|..+|..+..-|. +|++||....+.+. .. . . ++. .++ +.++.||+|+++. | T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~p 83 (322) T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGFT 83 (322) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSCS T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC Confidence 589999999999999999988887 89999977654331 11 1 1 222 356 7789999999998 5 Q ss_pred CCccc------c-ccc--C----HH---HHccCCCCcEEEEcCCCcccCHHHHHHHH--hcCCceEE Q psy13054 1020 LTKDT------E-QLI--G----RK---QFSLMKPTAILVNTSRGGLLDQEALVEFL--KDKKIGGA 1068 (1128) Q Consensus 1020 lt~~T------~-~li--~----~~---~l~~mk~ga~lIN~aRG~lVde~aL~~aL--~~g~i~ga 1068 (1128) ..+.- + .++ | .+ .+....|++++|+.+-..-+....+.+.- ...++.|. T Consensus 84 ~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~~~~~g~~~~rviG~ 150 (322) T 1t2d_A 84 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGL 150 (322) T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC T ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHHHHhcCCChHHEEec Confidence 43321 1 010 0 11 22333589999998654333333333322 24456555 |
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
---|
Probab=94.95 E-value=0.02 Score=64.80 Aligned_cols=65 Identities=20% Similarity=0.218 Sum_probs=48.4 Q ss_pred CeEEEEEcChhhHHHHHHHh-h-CCCEEEE-EeCCCCchh--hhhcC--Cc-ccChHhhhcc--CCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLK-A-FKVSKIL-YTSRRVKEE--GTALG--AQ-LVPLDTLCAE--SDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~-a-fG~~Vi~-~d~~~~~~~--~~~~g--~~-~~~l~ell~~--sDvV~l~lPlt 1021 (1128) .+|||||+|.||+..++.++ . -++++++ +|+...+.. ....+ .. +.++++++++ .|+|++++|.. T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 77 (344) T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGP 77 (344) T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGG T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCch Confidence 37999999999999999998 5 4788774 554444333 34456 33 3589999986 99999999944 |
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
---|
Probab=94.88 E-value=0.023 Score=63.85 Aligned_cols=68 Identities=13% Similarity=0.161 Sum_probs=50.8 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCC---chh--hhh----cCC--c---ccCh---HhhhccCCEEE Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRV---KEE--GTA----LGA--Q---LVPL---DTLCAESDFIF 1015 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~---~~~--~~~----~g~--~---~~~l---~ell~~sDvV~ 1015 (1128) +.||++.|+|.|.+|++++..|...|+ +|.++++... +.+ +.+ .+. . ..++ .+.+.++|+|+ T Consensus 146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiII 225 (312) T 3t4e_A 146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILT 225 (312) T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEE T ss_pred cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEE Confidence 789999999999999999999999999 8888987732 222 111 111 1 1233 45688999999 Q ss_pred EecCCC Q psy13054 1016 VTCALT 1021 (1128) Q Consensus 1016 l~lPlt 1021 (1128) ++.|.. T Consensus 226 NaTp~G 231 (312) T 3t4e_A 226 NGTKVG 231 (312) T ss_dssp ECSSTT T ss_pred ECCcCC Confidence 999965 |
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
---|
Probab=94.86 E-value=0.022 Score=67.79 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=53.8 Q ss_pred cCHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 312 VPLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 312 vsLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) .+++|+++. +|+|++++|-++.++.++ ++....+++|.++|+++.|.-.+...+.+.|++..+ T Consensus 67 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~ 132 (480) T 2zyd_A 67 YTVKEFVESLETPRRILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132 (480) T ss_dssp SSHHHHHHTBCSSCEEEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC T ss_pred CCHHHHHhCCCCCCEEEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCC Confidence 389999887 999999999888888888 355678899999999999988888889999987544 |
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
---|
Probab=94.85 E-value=0.017 Score=64.42 Aligned_cols=102 Identities=12% Similarity=0.156 Sum_probs=63.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEE-EEeCCCCchh-hhhcCCc-ccChHhhhc--cCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKI-LYTSRRVKEE-GTALGAQ-LVPLDTLCA--ESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi-~~d~~~~~~~-~~~~g~~-~~~l~ell~--~sDvV~l~lPlt~~T~~li~~ 1030 (1128) .+|||||+|.||+..++.++.. +++++ ++|+...+.. ..+. +. +.+++++++ ++|+|++++|..... + T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-----~ 84 (315) T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHA-----E 84 (315) T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHH-----H T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHH-----H Confidence 4799999999999999999876 67765 6665543332 1111 32 347899986 799999999943221 1 Q ss_pred HHHccCCCCc-EEEEc-CCCcccCHHHHHHHHhcCC Q psy13054 1031 KQFSLMKPTA-ILVNT-SRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1031 ~~l~~mk~ga-~lIN~-aRG~lVde~aL~~aL~~g~ 1064 (1128) -..+.++.|. +++.- .--.+-+.+.|.++.++.. T Consensus 85 ~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g 120 (315) T 3c1a_A 85 ITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATG 120 (315) T ss_dssp HHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHC T ss_pred HHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcC Confidence 2223355564 55552 2223334466776665543 |
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
---|
Probab=94.85 E-value=0.014 Score=61.46 Aligned_cols=89 Identities=13% Similarity=0.063 Sum_probs=58.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc--------ChHhh-hccCCEEEEecCCCcccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV--------PLDTL-CAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~--------~l~el-l~~sDvV~l~lPlt~~T~ 1025 (1128) ++|.|+|+|.+|+.+|+.|...|.+|+++|....+.. ....+.... .++++ +.++|+|++++|....+. T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~ 80 (218) T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL 80 (218) T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH Confidence 3689999999999999999999999999997665443 122343221 24443 678999999999665432 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) +-......+.+...+|-..+ T Consensus 81 --~~~~~a~~~~~~~~iia~~~ 100 (218) T 3l4b_C 81 --FIAQLVMKDFGVKRVVSLVN 100 (218) T ss_dssp --HHHHHHHHTSCCCEEEECCC T ss_pred --HHHHHHHHHcCCCeEEEEEe Confidence 22233334334444544333 |
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
---|
Probab=94.82 E-value=0.016 Score=66.08 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=66.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC---Cchh-hhhcCCccc---ChHhhh----ccCCEEEEecCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR---VKEE-GTALGAQLV---PLDTLC----AESDFIFVTCALT 1021 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~---~~~~-~~~~g~~~~---~l~ell----~~sDvV~l~lPlt 1021 (1128) .+.|++|.|+|.|.||..+++.++.+|++|++.++.. .+.+ .++.|+..+ ++.+.+ ...|+|+.++... T Consensus 178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 257 (366) T 2cdc_A 178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD 257 (366) T ss_dssp SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh Confidence 4679999999999999999999999999999998765 4433 445565432 211222 3479999888743 Q ss_pred cccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) +.. + ...+..|+++..+|+++-. T Consensus 258 ~~~---~-~~~~~~l~~~G~iv~~g~~ 280 (366) T 2cdc_A 258 VNI---L-GNVIPLLGRNGVLGLFGFS 280 (366) T ss_dssp THH---H-HHHGGGEEEEEEEEECSCC T ss_pred HHH---H-HHHHHHHhcCCEEEEEecC Confidence 322 1 4567788999999998753 |
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
---|
Probab=94.78 E-value=0.028 Score=63.54 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=70.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhh--hh-------c----CCcc-cChHhhhccCCEEEEec--C Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG--TA-------L----GAQL-VPLDTLCAESDFIFVTC--A 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~--~~-------~----g~~~-~~l~ell~~sDvV~l~l--P 1019 (1128) ++|+|||.|.+|..+|..+...|. +|+.||....+.+. .+ . .++. .++ +.++.||+|+++. | T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p 93 (328) T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP 93 (328) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC Confidence 689999999999999999988888 99999987654331 00 0 1222 356 7789999999998 4 Q ss_pred CCcc-cc--------cccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHHH--hcCCceEEE--Ee Q psy13054 1020 LTKD-TE--------QLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEFL--KDKKIGGAG--LD 1071 (1128) Q Consensus 1020 lt~~-T~--------~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL--~~g~i~gaa--LD 1071 (1128) ..+. |+ .++. .+.+....|++++|+.+-..-+....+.+.- ...++.|.+ || T Consensus 94 ~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~~t~Ld 160 (328) T 2hjr_A 94 RKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYFKEKSGIPANKVCGMSGVLD 160 (328) T ss_dssp CCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEESCHHHH T ss_pred CCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHhcCCChhhEEEeCcHHH Confidence 3221 11 1110 0123333589999998664333333333322 345666663 45 |
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
---|
Probab=94.75 E-value=0.027 Score=63.53 Aligned_cols=102 Identities=16% Similarity=0.228 Sum_probs=62.9 Q ss_pred CeEEEEEcChhhHHHHHHHh-h-CCCEEE-EEeCCCCchh--hhhcCC-c-ccChHhhhc--cCCEEEEecCCCcccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLK-A-FKVSKI-LYTSRRVKEE--GTALGA-Q-LVPLDTLCA--ESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~-a-fG~~Vi-~~d~~~~~~~--~~~~g~-~-~~~l~ell~--~sDvV~l~lPlt~~T~~l 1027 (1128) .+|||||+|.||+..++.++ . -|++++ ++|+...+.. +...|. . +.++++++. +.|+|++++|..... T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~--- 85 (346) T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHP--- 85 (346) T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHH--- T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHH--- Confidence 47999999999999999987 5 478865 4565544433 334565 2 348999987 699999999943221 Q ss_pred cCHHHHccCCCCc-EEEEc-CCCcccCHHHHHHHHhcC Q psy13054 1028 IGRKQFSLMKPTA-ILVNT-SRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1028 i~~~~l~~mk~ga-~lIN~-aRG~lVde~aL~~aL~~g 1063 (1128) .-..+.++.|. +++.- .-..+-+.+.|.++.++. T Consensus 86 --~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~ 121 (346) T 3cea_A 86 --EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSH 121 (346) T ss_dssp --HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTC T ss_pred --HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhC Confidence 12233445554 44421 111222334566666665 |
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
---|
Probab=94.72 E-value=0.026 Score=64.38 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=47.3 Q ss_pred CCeEEEEEcChhhHH-HHHHHhhC-CCEEE-EEeCCCCchh--hhhcC-Cc-ccChHhhhccC--CEEEEecCC Q psy13054 956 GATVGIVGLGNIGLE-TAKLLKAF-KVSKI-LYTSRRVKEE--GTALG-AQ-LVPLDTLCAES--DFIFVTCAL 1020 (1128) Q Consensus 956 gktvGIIG~G~IG~~-vA~~l~af-G~~Vi-~~d~~~~~~~--~~~~g-~~-~~~l~ell~~s--DvV~l~lPl 1020 (1128) ..+|||||+|.||+. .++.++.. +++++ ++|+...+.. +...+ .. +.++++++... |+|++++|. T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 78 (359) T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPP 78 (359) T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCH T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCc Confidence 357999999999996 88888876 78877 5565444433 23332 33 35899999865 999999993 |
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
---|
Probab=94.66 E-value=0.0065 Score=66.96 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=66.1 Q ss_pred eeCCCCCCCCccccccCCccccceeecccccccc--cccccCCcc-cCHHHHhhcCCEEEEecCCCcccccccCHH--HH Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS--NGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRK--QF 343 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~--~~~~~g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn~~--~l 343 (1128) ++|.|.+|+.+++.....+ ..+..+++.... ...+.|++. .+++++++.+|+|++++|-...++.++... .+ T Consensus 5 iiG~G~mG~~~a~~l~~~g---~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~ 81 (296) T 2gf2_A 5 FIGLGNMGNPMAKNLMKHG---YPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL 81 (296) T ss_dssp EECCSTTHHHHHHHHHHTT---CCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGG T ss_pred EEeccHHHHHHHHHHHHCC---CEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHH Confidence 6677777777665321111 123344432211 122235554 389999999999999999877777766542 45 Q ss_pred hcCCCCcEEEEecCCCccCHHHHHHHHHc Q psy13054 344 SLMKPTAILINTSRGGLLDQEALVEFLKD 372 (1128) Q Consensus 344 ~~MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128) +.++++.++|+++....-+...+.+.+.+ T Consensus 82 ~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (296) T 2gf2_A 82 KKVKKGSLLIDSSTIDPAVSKELAKEVEK 110 (296) T ss_dssp GTCCTTCEEEECSCCCHHHHHHHHHHHHH T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHH Confidence 67899999999887776666677777765 |
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
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Probab=94.63 E-value=0.018 Score=64.18 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=49.1 Q ss_pred CHHHHhhcCCEEEEecCCCcccccccCHH--HHhcCCCCcEEEEecCCCccCHHHHHHHHHcC Q psy13054 313 PLDTLCAESDFIFVTCALTKDTEQLIGRK--QFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 (1128) Q Consensus 313 sLdeLl~~SDiVslh~PLT~~T~~lIn~~--~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG 373 (1128) +++++++.+|+|++++|....++.++... .++.++++.++|+++.+.....+.|.+.+... T Consensus 79 ~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 141 (316) T 2uyy_A 79 TPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSR 141 (316) T ss_dssp CHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT T ss_pred CHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc Confidence 78899999999999999766676665432 35678999999999998766778888888653 |
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
---|
Probab=94.62 E-value=0.27 Score=55.18 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=70.1 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--h----h----hcCCc---ccChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--G----T----ALGAQ---LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~----~----~~g~~---~~~l~ell~~sDvV~l~l 1018 (1128) .+.|.+|++||= +++.+..+..+..||++|.+..|..-.+. . + +.|.. ..+++|.++.+|||..-. T Consensus 152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~ 231 (315) T 1pvv_A 152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 231 (315) T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC T ss_pred CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc Confidence 378999999998 89999999999999999999887643221 1 1 34533 248999999999999743 Q ss_pred CC-------Ccc-----cccccCHHHHccCCCCcEEEEcC Q psy13054 1019 AL-------TKD-----TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1019 Pl-------t~~-----T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) =. .++ ...-++.+.++.+||+++|.-+. T Consensus 232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l 271 (315) T 1pvv_A 232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 271 (315) T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS T ss_pred eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC Confidence 21 111 12457999999999999998774 |
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
---|
Probab=94.62 E-value=0.01 Score=65.34 Aligned_cols=100 Identities=21% Similarity=0.218 Sum_probs=63.4 Q ss_pred eeeCCCCCCCCccccc--cCCccccceeecccccccc--cccccCC--c-ccCHHHHhhcCCEEEEecCCCcccccccCH Q psy13054 268 FFLGPKKNGSQNPKWR--MGSKTDTNHYFGYNWFERS--NGTALGA--Q-LVPLDTLCAESDFIFVTCALTKDTEQLIGR 340 (1128) Q Consensus 268 ~ilG~g~iG~~va~~~--~g~~~~~~~~~g~~~~~~~--~~~~~g~--~-~vsLdeLl~~SDiVslh~PLT~~T~~lIn~ 340 (1128) .++|.|.+|+.++... .|.+ ..+..+++.+.. ...+.|. + ..++++++++||+|++++|... ...++.. T Consensus 10 ~iIG~G~mG~~~a~~l~~~g~~---~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~~~ 85 (290) T 3b1f_A 10 YIAGLGLIGASLALGIKRDHPH---YKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFIKI 85 (290) T ss_dssp EEECCSHHHHHHHHHHHHHCTT---SEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHHHH T ss_pred EEEeeCHHHHHHHHHHHhCCCC---cEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHHHH Confidence 3677777777766531 1111 234445432211 1122344 1 3478889999999999999544 3555532 Q ss_pred HHHhc-CCCCcEEEEecCCCccCHHHHHHHHHc Q psy13054 341 KQFSL-MKPTAILINTSRGGLLDQEALVEFLKD 372 (1128) Q Consensus 341 ~~l~~-MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128) .... ++++.++|+++.......+.+.+.+.+ T Consensus 86 -l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~ 117 (290) T 3b1f_A 86 -LADLDLKEDVIITDAGSTKYEIVRAAEYYLKD 117 (290) T ss_dssp -HHTSCCCTTCEEECCCSCHHHHHHHHHHHHTT T ss_pred -HHhcCCCCCCEEEECCCCchHHHHHHHHhccc Confidence 3456 899999999998877667888888875 |
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
---|
Probab=94.57 E-value=0.028 Score=62.82 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=41.6 Q ss_pred CeEEEEEcChhhHHHHHHHhh-CCCEEE-EEeCCCCchhhhhcCCcc---cChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKA-FKVSKI-LYTSRRVKEEGTALGAQL---VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~a-fG~~Vi-~~d~~~~~~~~~~~g~~~---~~l~ell~~sDvV~l~lPl 1020 (1128) .+|||||+|+||+.+++.++. -+++++ ++|+...+.. ..|+.+ .++.+. .+.|+|++++|. T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~--~~g~~~~~~~~l~~~-~~~DvViiatp~ 75 (304) T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVP--FELQPFRVVSDIEQL-ESVDVALVCSPS 75 (304) T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------CCTTSCEESSGGGS-SSCCEEEECSCH T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHH--HcCCCcCCHHHHHhC-CCCCEEEECCCc Confidence 579999999999999999976 478877 4665443322 245442 245555 689999999993 |
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
---|
Probab=94.54 E-value=0.03 Score=65.97 Aligned_cols=104 Identities=10% Similarity=0.085 Sum_probs=70.6 Q ss_pred CCCeEEEEEcChh--hHHHHHHHhh----CCCEEEEEeCCCCchh-hhh---c------CCcc-cChHhhhccCCEEEEe Q psy13054 955 KGATVGIVGLGNI--GLETAKLLKA----FKVSKILYTSRRVKEE-GTA---L------GAQL-VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 955 ~gktvGIIG~G~I--G~~vA~~l~a----fG~~Vi~~d~~~~~~~-~~~---~------g~~~-~~l~ell~~sDvV~l~ 1017 (1128) ...+|+|||.|.+ |..+++.+.. .| +|+.||....+.+ ... . .++. .++++.++.||+|+++ T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a 82 (450) T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS 82 (450) T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec Confidence 4568999999998 4788877653 46 9999997654422 110 0 1222 3789999999999999 Q ss_pred cCCC-----------cccccccCH------------------------HHHccCCCCcEEEEcCCCcccCHHHHHHH Q psy13054 1018 CALT-----------KDTEQLIGR------------------------KQFSLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128) Q Consensus 1018 lPlt-----------~~T~~li~~------------------------~~l~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128) ++-. |.-.|+... +.++...|+|++||.+..-=+-+.++.+. T Consensus 83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~ 159 (450) T 3fef_A 83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKV 159 (450) T ss_dssp CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHH T ss_pred cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHH Confidence 9742 444555332 23445568999999988776666666553 |
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
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Probab=94.46 E-value=0.31 Score=55.17 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=70.7 Q ss_pred cCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--h--------hhcCCcc---cChHhhhccCCEEEEecC Q psy13054 954 LKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--G--------TALGAQL---VPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 954 L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~--------~~~g~~~---~~l~ell~~sDvV~l~lP 1019 (1128) +.|++|++||= +++.+..+..+..||++|.+..|..-.+. . +..|... .+++|.++.+|||..-.= T Consensus 177 l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w 256 (340) T 4ep1_A 177 FKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVW 256 (340) T ss_dssp CTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC T ss_pred CCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCc Confidence 78999999997 57788888889999999998877543221 1 1345332 389999999999986442 Q ss_pred CC----c--c-----cccccCHHHHccCCCCcEEEEcC---CCcccC Q psy13054 1020 LT----K--D-----TEQLIGRKQFSLMKPTAILVNTS---RGGLLD 1052 (1128) Q Consensus 1020 lt----~--~-----T~~li~~~~l~~mk~ga~lIN~a---RG~lVd 1052 (1128) .. . + ...-++.+.++.+|++++|.-+. ||.=|+ T Consensus 257 ~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt 303 (340) T 4ep1_A 257 MSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVT 303 (340) T ss_dssp ------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBC T ss_pred cCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeC Confidence 11 0 1 12357999999999999998876 564444 |
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
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Probab=94.39 E-value=0.23 Score=55.94 Aligned_cols=94 Identities=14% Similarity=0.184 Sum_probs=69.2 Q ss_pred ccCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh--h--------hhcCCc---ccChHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE--G--------TALGAQ---LVPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~--------~~~g~~---~~~l~ell~~sDvV~l~ 1017 (1128) .+.|++|++||=| ++.+..+..+..||++|.+..|..-.+. . ++.|.. ..+++|.++.+|||..- T Consensus 164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~ 243 (325) T 1vlv_A 164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD 243 (325) T ss_dssp CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC T ss_pred CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec Confidence 3789999999995 9999999999999999998876542221 1 134533 24899999999999973 Q ss_pred cCC-------Ccc-----cccccCHHHHccC-CCCcEEEEcC Q psy13054 1018 CAL-------TKD-----TEQLIGRKQFSLM-KPTAILVNTS 1046 (1128) Q Consensus 1018 lPl-------t~~-----T~~li~~~~l~~m-k~ga~lIN~a 1046 (1128) .=. .++ ...-++++.++.+ ||+++|.-+. T Consensus 244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~L 285 (325) T 1vlv_A 244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL 285 (325) T ss_dssp CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS T ss_pred cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCC Confidence 321 111 1245689999999 9999998774 |
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
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Probab=94.37 E-value=0.18 Score=57.62 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=67.8 Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCch----h--------hhhcCCc--c-cChHhhhccCCEEEE Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKE----E--------GTALGAQ--L-VPLDTLCAESDFIFV 1016 (1128) Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~----~--------~~~~g~~--~-~~l~ell~~sDvV~l 1016 (1128) +.|++|++||=+ ++.+..+..+..|||+|.+..|..-.+ + +...|.. . .+++|.++.+|||.. T Consensus 178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt 257 (365) T 4amu_A 178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT 257 (365) T ss_dssp CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe Confidence 789999999988 788999999999999999887754322 1 1223433 2 389999999999997 Q ss_pred ec--CCCc--c---------cccccCHHHHccCCCCcEEEEcC Q psy13054 1017 TC--ALTK--D---------TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1017 ~l--Plt~--~---------T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) -+ +..+ + ...-++.+.++.+|++++|.=+. T Consensus 258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL 300 (365) T 4amu_A 258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL 300 (365) T ss_dssp CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS T ss_pred cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC Confidence 32 1121 1 11347889999999999888764 |
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
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Probab=94.34 E-value=0.05 Score=61.51 Aligned_cols=90 Identities=21% Similarity=0.284 Sum_probs=67.7 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--ChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--PLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .|++|.|+|.|.||...++.++.+|++|++.+....+.+ +++.|+..+ +.+++.+..|+|+-+....+. -.. T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~-----~~~ 250 (348) T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYD-----LKD 250 (348) T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCC-----HHH T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHH-----HHH Confidence 578999999999999999999999999999887766655 566676432 334444478999987774322 235 Q ss_pred HHccCCCCcEEEEcCCCc Q psy13054 1032 QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~ 1049 (1128) .++.++++..++.++-.. T Consensus 251 ~~~~l~~~G~iv~~G~~~ 268 (348) T 3two_A 251 YLKLLTYNGDLALVGLPP 268 (348) T ss_dssp HHTTEEEEEEEEECCCCC T ss_pred HHHHHhcCCEEEEECCCC Confidence 677888899998887543 |
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
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Probab=94.32 E-value=0.15 Score=57.16 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=67.5 Q ss_pred ccCCCeEEEEEcC---hhhHHHHHHHhhCCCEEEEEeCCCCchh------hhhcCCcc---cChHhhhccCCEEEEecCC Q psy13054 953 GLKGATVGIVGLG---NIGLETAKLLKAFKVSKILYTSRRVKEE------GTALGAQL---VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 953 ~L~gktvGIIG~G---~IG~~vA~~l~afG~~Vi~~d~~~~~~~------~~~~g~~~---~~l~ell~~sDvV~l~lPl 1020 (1128) .+.|++|++||=| ++.+..+..+..||++|.+..|..-.+. +++.|.+. .+++|.++.+|||..-.=- T Consensus 152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q 231 (308) T 1ml4_A 152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ 231 (308) T ss_dssp CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC T ss_pred CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc Confidence 3789999999984 8999999999999999998876543221 12235442 4899999999999974421 Q ss_pred C------ccc-----ccccCHHHHccCCCCcEEEEcC Q psy13054 1021 T------KDT-----EQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1021 t------~~T-----~~li~~~~l~~mk~ga~lIN~a 1046 (1128) . ++- ..-++.+.++.+||+++|.-+. T Consensus 232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 268 (308) T 1ml4_A 232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL 268 (308) T ss_dssp GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS T ss_pred ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC Confidence 1 111 2346888888888888887664 |
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
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Probab=94.30 E-value=0.041 Score=61.88 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=47.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC---CEEEE-EeCCCCchh--hhhcCCc--ccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK---VSKIL-YTSRRVKEE--GTALGAQ--LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG---~~Vi~-~d~~~~~~~--~~~~g~~--~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .++||||+|.||+..++.++..+ +++++ +|+...+.. ++..++. +.++++++. +.|+|++++|.. T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 77 (334) T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHP 77 (334) T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGG T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH Confidence 37999999999999999998764 46655 454433333 3455653 458999997 699999999944 |
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
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Probab=94.29 E-value=0.034 Score=62.85 Aligned_cols=65 Identities=9% Similarity=0.200 Sum_probs=47.0 Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEEE-EeCCCCchh--hhhcCCc--ccChHhhhcc--CCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKIL-YTSRRVKEE--GTALGAQ--LVPLDTLCAE--SDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi~-~d~~~~~~~--~~~~g~~--~~~l~ell~~--sDvV~l~lPlt 1021 (1128) .++||||+|.||+. .+..++.. ++++++ +|+...+.. ++++++. +.+++++++. -|+|++++|.. T Consensus 24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~ 97 (350) T 4had_A 24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTS 97 (350) T ss_dssp EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGG T ss_pred cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCc Confidence 37999999999985 56777665 778775 454444333 4556764 4589999954 79999999943 |
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
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Probab=94.28 E-value=0.033 Score=59.27 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=41.2 Q ss_pred CeEEEEEcChhhHHHHHH--HhhCCCEEEEE-eCCCCchhhhhcCCc---ccChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGLGNIGLETAKL--LKAFKVSKILY-TSRRVKEEGTALGAQ---LVPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~--l~afG~~Vi~~-d~~~~~~~~~~~g~~---~~~l~ell~~sDvV~l~lPl 1020 (1128) .+++|||+|++|+.+++. ....|++++++ |+.+.+......++. ..++++++++.|+|++++|. T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs 155 (215) T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA 155 (215) T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc Confidence 469999999999999993 45668887765 444333221112222 34788988777999999995 |
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
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Probab=94.26 E-value=0.02 Score=64.94 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=34.3 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128) .+++++|||||+|+||+.+|+.++..|++|++|++... T Consensus 13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~ 50 (338) T 1np3_A 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGS 50 (338) T ss_dssp HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTC T ss_pred hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChH Confidence 46789999999999999999999999999999987543 |
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
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Probab=94.21 E-value=0.026 Score=63.50 Aligned_cols=112 Identities=16% Similarity=0.228 Sum_probs=67.4 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchhhh--hc--CCc-------c-cChHhhhccCCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEEGT--AL--GAQ-------L-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~~--~~--g~~-------~-~~l~ell~~sDvV~l~lPlt 1021 (1128) -++|+|||.|.||..+|..+...|. ++++||....+.... +. ... . .+..+.++.||+|+++.|.. T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316) T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316) T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC Confidence 3689999999999999999976564 899999765433211 11 011 0 13456799999999998743 Q ss_pred cccccc-----c--C----H---HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEE Q psy13054 1022 KDTEQL-----I--G----R---KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGA 1068 (1128) Q Consensus 1022 ~~T~~l-----i--~----~---~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~ga 1068 (1128) . ..++ + | . +.+....|++++++.+..-=+....+.+. +...++.|. T Consensus 86 ~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~~~~s~~p~~rviG~ 147 (316) T 1ldn_A 86 Q-KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGS 147 (316) T ss_dssp C-CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEEC T ss_pred C-CCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHHHhCCCHHHEEec Confidence 2 1111 1 0 1 22333468999999866332333333332 223466665 |
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
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Probab=94.19 E-value=0.029 Score=66.45 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=50.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchh--hhhcCCcc--------cChHhhhccCCEEEEecCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEE--GTALGAQL--------VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~--~~~~g~~~--------~~l~ell~~sDvV~l~lPlt 1021 (1128) .+.+++|+|+|.|.+|+.+++.|... |.+|.+++++..+.. ....++.. .++.++++.+|+|++++|.. T Consensus 20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~ 99 (467) T 2axq_A 20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT 99 (467) T ss_dssp ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG T ss_pred CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh Confidence 67899999999999999999999887 789999987655443 11223321 14567788999999999954 |
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
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Probab=94.18 E-value=0.24 Score=56.07 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=69.6 Q ss_pred ccCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh--h----h----hcCCc---ccChHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE--G----T----ALGAQ---LVPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~----~----~~g~~---~~~l~ell~~sDvV~l~ 1017 (1128) .+.|.+|++||=| ++++..+..+..||++|.+..|..-.+. . + +.|.. ..+++|.++.+|||..- T Consensus 152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd 231 (335) T 1dxh_A 152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 231 (335) T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC T ss_pred CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC Confidence 3789999999996 9999999999999999998876543221 1 1 34533 24899999999999973 Q ss_pred cC--CC------cc-----cccccCHHHHccC-CCCcEEEEcC Q psy13054 1018 CA--LT------KD-----TEQLIGRKQFSLM-KPTAILVNTS 1046 (1128) Q Consensus 1018 lP--lt------~~-----T~~li~~~~l~~m-k~ga~lIN~a 1046 (1128) .= .. ++ ...-+|.+.++.+ ||+++|.-+. T Consensus 232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL 274 (335) T 1dxh_A 232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL 274 (335) T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS T ss_pred CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC Confidence 32 01 00 1245799999999 9999998774 |
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
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Probab=94.17 E-value=0.039 Score=62.08 Aligned_cols=101 Identities=19% Similarity=0.277 Sum_probs=64.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEE-EEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKI-LYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi-~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) .+|||||+|+||+.+++.+... +++++ ++|++.++ ... .++. +.++++++.+.|+|+++.|..... +... T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~~ 76 (320) T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK-TPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQA 76 (320) T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHH T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHHH Confidence 3799999999999999999776 67765 55655443 211 3443 247888888999999999854321 2234 Q ss_pred ccCCCCcEEEEcCCCcc-c-CH-HHHHHHHhcCC Q psy13054 1034 SLMKPTAILVNTSRGGL-L-DQ-EALVEFLKDKK 1064 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~l-V-de-~aL~~aL~~g~ 1064 (1128) ..++.|.-+|...-..+ + +. +.|.++.+++. T Consensus 77 ~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~ 110 (320) T 1f06_A 77 PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG 110 (320) T ss_dssp HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT T ss_pred HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC Confidence 55666766665444332 2 22 45566666544 |
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
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Probab=94.15 E-value=0.063 Score=61.60 Aligned_cols=64 Identities=22% Similarity=0.193 Sum_probs=48.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh--hhcC--Ccc---cChHhhhccCCEEEE Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG--TALG--AQL---VPLDTLCAESDFIFV 1016 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~--~~~g--~~~---~~l~ell~~sDvV~l 1016 (1128) .+.+++|||+|.|.+|+.+++.++.+|++|+++|+....+.. .+.. ..+ ..+.++++++|+|+. T Consensus 9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377) T 3orq_A 9 LKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY 79 (377) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee Confidence 468999999999999999999999999999999987654421 1110 011 136678889999865 |
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
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Probab=94.12 E-value=0.04 Score=57.99 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=30.5 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) .++.+++|||||+|++|+.+|+++...|.+|.+|++. T Consensus 15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~ 51 (209) T 2raf_A 15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSK 51 (209) T ss_dssp -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTT T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC Confidence 4678899999999999999999999999999999864 |
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
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Probab=94.12 E-value=0.03 Score=60.88 Aligned_cols=89 Identities=26% Similarity=0.298 Sum_probs=61.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC-------------------Cchh-h----hhc--CCc--c-- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR-------------------VKEE-G----TAL--GAQ--L-- 1001 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~-------------------~~~~-~----~~~--g~~--~-- 1001 (1128) .|.+++|.|||+|.+|..+++.|...|. ++.++|... .+.+ . .+. +++ . T Consensus 25 ~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~ 104 (251) T 1zud_1 25 KLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ 104 (251) T ss_dssp HHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC T ss_pred HHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe Confidence 6899999999999999999999999997 666776543 1111 0 000 111 1 Q ss_pred -----cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEc Q psy13054 1002 -----VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1002 -----~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) ..++++++++|+|+.+.. +.+++.++++...+. +.-+|.. T Consensus 105 ~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~ 149 (251) T 1zud_1 105 QRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITA 149 (251) T ss_dssp SCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEE T ss_pred ccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEE Confidence 135578889999999887 677888888765553 3335554 |
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
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Probab=94.12 E-value=0.082 Score=59.57 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=71.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--h---hh------cCCcc--cChHhhhccCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--G---TA------LGAQL--VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~---~~------~g~~~--~~l~ell~~sDvV~l~lPl 1020 (1128) ..++|+|||.|.+|..+|..+..-|+ +++.+|....+.+ . .+ ...+. .+-.+.++.||+|+++.+. T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~ 83 (321) T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV 83 (321) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc Confidence 45789999999999999999977666 9999998776542 1 11 11111 2335789999999998753 Q ss_pred Ccccccc-----c--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE Q psy13054 1021 TKDTEQL-----I--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG 1069 (1128) Q Consensus 1021 t~~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa 1069 (1128) +...++ + |. +.+....|++++|+++-.-=+....+.+. +...++.|.+ T Consensus 84 -p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~ 147 (321) T 3p7m_A 84 -PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMA 147 (321) T ss_dssp -CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEEC T ss_pred -CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHhcCCCHHHEEeec Confidence 222222 1 11 12344458999999964433333444343 2234666765 |
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
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Probab=94.12 E-value=0.034 Score=65.18 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=48.6 Q ss_pred CCCeEEEEEcChhhH-HHHHHHhhC-CCEEE-EEeCCCCchh--hhhcCCc------ccChHhhhc--cCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGL-ETAKLLKAF-KVSKI-LYTSRRVKEE--GTALGAQ------LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~-~vA~~l~af-G~~Vi-~~d~~~~~~~--~~~~g~~------~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .-.+|||||+|.||+ .+++.++.. +++++ ++|+...+.. ....++. +.++++++. +.|+|++++|.. T Consensus 82 ~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~ 161 (433) T 1h6d_A 82 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS 161 (433) T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG T ss_pred CceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCch Confidence 335799999999997 899988765 67765 5555443332 3344553 458999997 799999999943 |
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
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Probab=94.11 E-value=0.24 Score=55.70 Aligned_cols=95 Identities=14% Similarity=0.073 Sum_probs=67.5 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCch--hhh--------hcCC--c-ccChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKE--EGT--------ALGA--Q-LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~--~~~--------~~g~--~-~~~l~ell~~sDvV~l~l 1018 (1128) .+.|.+|++||=| ++.+..+..+..||++|.+..|..-.+ ... +.|. + ..+++|.++.+|||..-+ T Consensus 152 ~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~ 231 (321) T 1oth_A 152 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT 231 (321) T ss_dssp CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC T ss_pred CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEec Confidence 3789999999985 588888888889999999988765421 111 2343 3 248999999999999833 Q ss_pred ----CCCcc--------cccccCHHHHccCCCCcEEEEcCC Q psy13054 1019 ----ALTKD--------TEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1019 ----Plt~~--------T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) ....+ ...-++.+.++.+||+++|.-+.- T Consensus 232 w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP 272 (321) T 1oth_A 232 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP 272 (321) T ss_dssp SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC T ss_pred cccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCC Confidence 21111 113468899999999999887743 |
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
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Probab=94.09 E-value=0.059 Score=60.89 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=72.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchhh----hhcC-------Ccc-cChHhhhccCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEEG----TALG-------AQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~----~~~g-------~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) ..++|+|||.|.||..+|..|...|. +++++|....+.+. ...+ ++. .+..+.++.||+|+++.+. T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~ 83 (326) T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA 83 (326) T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc Confidence 35789999999999999999987776 89999976543321 1111 111 1235688999999999863 Q ss_pred Ccccccc-----c--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEE--EEe Q psy13054 1021 TKDTEQL-----I--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGA--GLD 1071 (1128) Q Consensus 1021 t~~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~ga--aLD 1071 (1128) +...++ + |. +.+....|++++++++-.-=+....+.+. +...++.|. -|| T Consensus 84 -p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~~k~~g~p~~rviG~gt~LD 151 (326) T 3pqe_A 84 -NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLD 151 (326) T ss_dssp -CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHH T ss_pred -CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHHHHhcCCCHHHEEeeccccH Confidence 322222 1 11 23445578999999986544444444443 223455554 355 |
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
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Probab=94.09 E-value=0.073 Score=59.83 Aligned_cols=112 Identities=14% Similarity=0.207 Sum_probs=71.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhh---------cCCcc--cChHhhhccCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTA---------LGAQL--VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~---------~g~~~--~~l~ell~~sDvV~l~lPlt 1021 (1128) .+|+|||.|.||..+|..+...|+ +++.+|....+.. +.+ ..... .+..+.++.||+|+++.+.. T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~ 80 (314) T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP 80 (314) T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC- T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC Confidence 379999999999999999977676 8999998775533 111 11122 25678899999999987643 Q ss_pred cccccc-----c--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE Q psy13054 1022 KDTEQL-----I--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG 1069 (1128) Q Consensus 1022 ~~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa 1069 (1128) ...++ + |. +.+....|++++||++-.-=+....+.+. +...++.|.+ T Consensus 81 -~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~~g~p~~rviG~~ 143 (314) T 3nep_X 81 -RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYEASGFPTNRVMGMA 143 (314) T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHHHHHHTCCGGGEEECC T ss_pred -CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHHHHhcCCChHHEEeec Confidence 22222 1 11 23455678999999986544444444443 1234666765 |
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
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Probab=94.06 E-value=0.064 Score=60.97 Aligned_cols=90 Identities=26% Similarity=0.251 Sum_probs=66.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-------ChHh-hhccCCEEEEecCCC-ccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-------PLDT-LCAESDFIFVTCALT-KDT 1024 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-------~l~e-ll~~sDvV~l~lPlt-~~T 1024 (1128) .|++|.|+|.|.||...++.++.+|++|++.+....+.+ +++.|+..+ ++.+ +....|+|+.+++.+ ++ T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~- 257 (360) T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI- 257 (360) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC- T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHH- Confidence 578999999999999999999999999999987666554 555665432 2222 224689999988752 11 Q ss_pred ccccCHHHHccCCCCcEEEEcCCC Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) .+ ...++.|+++..+|.++.. T Consensus 258 --~~-~~~~~~l~~~G~iv~~g~~ 278 (360) T 1piw_A 258 --DF-NIMPKAMKVGGRIVSISIP 278 (360) T ss_dssp --CT-TTGGGGEEEEEEEEECCCC T ss_pred --HH-HHHHHHhcCCCEEEEecCC Confidence 12 2457788999999988754 |
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
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Probab=94.05 E-value=0.047 Score=62.22 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=46.6 Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEEEEeCCCCchhhhhc-CCc-ccChHhhhcc--CCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKILYTSRRVKEEGTAL-GAQ-LVPLDTLCAE--SDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi~~d~~~~~~~~~~~-g~~-~~~l~ell~~--sDvV~l~lPlt 1021 (1128) .+|||||+|.||+. .++.++.. +++++++.++......... +.. +.++++++.. .|+|++++|.. T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (362) T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDN 76 (362) T ss_dssp EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGG T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChH Confidence 47999999999997 77777766 7887754433333223333 443 3589999987 89999999943 |
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
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Probab=93.96 E-value=0.032 Score=59.37 Aligned_cols=84 Identities=18% Similarity=0.212 Sum_probs=56.6 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--------ChHhh-hccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--------PLDTL-CAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--------~l~el-l~~sDvV~l~lPlt~~T~ 1025 (1128) .+++.|+|+|.+|+.+|+.|...|. |+++++...... .. .++... .|+++ +.++|.|++++|..+.+ T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n- 85 (234) T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET- 85 (234) T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH- T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH- Confidence 4579999999999999999999999 999986655433 22 343321 23333 78899999999865443 Q ss_pred cccCHHHHccCCCCcEEE Q psy13054 1026 QLIGRKQFSLMKPTAILV 1043 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lI 1043 (1128) +.-....+.+.++..+| T Consensus 86 -~~~~~~a~~~~~~~~ii 102 (234) T 2aef_A 86 -IHCILGIRKIDESVRII 102 (234) T ss_dssp -HHHHHHHHHHCSSSEEE T ss_pred -HHHHHHHHHHCCCCeEE Confidence 33334455566664444 |
>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
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Probab=93.94 E-value=0.12 Score=59.83 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=69.0 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHcc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~ 1035 (1128) -.++-|+|.|.+|+++++.++.+|++|+++|++..... .+-+..+|-++...| .+.+.. T Consensus 204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~~-----------~~~fp~a~~~~~~~p----------~~~~~~ 262 (386) T 2we8_A 204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFAT-----------TARFPTADEVVVDWP----------HRYLAA 262 (386) T ss_dssp CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTSC-----------TTTCSSSSEEEESCH----------HHHHHH T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhcc-----------cccCCCceEEEeCCh----------HHHHHh Confidence 34799999999999999999999999999998875321 112345554444433 122222 Q ss_pred ------CCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEE Q psy13054 1036 ------MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGL 1070 (1128) Q Consensus 1036 ------mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaL 1070 (1128) +.+++++|=+.++.-.|...|..+|+++..++.|+ T Consensus 263 ~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG~ 303 (386) T 2we8_A 263 QAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGA 303 (386) T ss_dssp HHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEEE T ss_pred hccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEEE Confidence 67888888899999999999999999874455443 |
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
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Probab=93.88 E-value=0.047 Score=61.90 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=46.3 Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEEEE-eCCCCchhhhhcCCc-ccChHhhhcc--CCEEEEecCCCc Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKILY-TSRRVKEEGTALGAQ-LVPLDTLCAE--SDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi~~-d~~~~~~~~~~~g~~-~~~l~ell~~--sDvV~l~lPlt~ 1022 (1128) .+|||||+|.||+. .++.++.. +++++++ |+...+......+.. +.++++++.. .|+|++++|... T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~ 79 (352) T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDT 79 (352) T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTT T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHH Confidence 47999999999997 78888776 7887744 433322221112333 3589999976 899999999543 |
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
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Probab=93.86 E-value=0.07 Score=60.38 Aligned_cols=64 Identities=25% Similarity=0.276 Sum_probs=45.9 Q ss_pred eEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchh---hhhcCC------------------c-ccChHhhhccCCEE Q psy13054 958 TVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEE---GTALGA------------------Q-LVPLDTLCAESDFI 1014 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~---~~~~g~------------------~-~~~l~ell~~sDvV 1014 (1128) +|||+|+|.||+.+++.+... ++++++..++..+.. .+..|+ . ..+.++++...|+| T Consensus 4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV 83 (334) T 2czc_A 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII 83 (334) T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE T ss_pred EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE Confidence 799999999999999999765 577766654433221 222222 1 23688888899999 Q ss_pred EEecCCC Q psy13054 1015 FVTCALT 1021 (1128) Q Consensus 1015 ~l~lPlt 1021 (1128) +.++|.. T Consensus 84 ~~aTp~~ 90 (334) T 2czc_A 84 VDATPGG 90 (334) T ss_dssp EECCSTT T ss_pred EECCCcc Confidence 9999954 |
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
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Probab=93.85 E-value=0.12 Score=60.98 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=71.7 Q ss_pred ccCCCeEEEEEcC----------hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhc-CCccc-ChHhhhccCCEEEEecCC Q psy13054 953 GLKGATVGIVGLG----------NIGLETAKLLKAFKVSKILYTSRRVKEEGTAL-GAQLV-PLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 953 ~L~gktvGIIG~G----------~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~-g~~~~-~l~ell~~sDvV~l~lPl 1020 (1128) .+.|++|+|+|+. .-...+++.|...|++|.+|||.........+ ++.++ ++++.++.+|+|+++.+- T Consensus 319 ~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~ 398 (446) T 4a7p_A 319 DVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEW 398 (446) T ss_dssp CCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCC T ss_pred cCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCC Confidence 5789999999997 66899999999999999999998753222222 45554 688999999999998875 Q ss_pred CcccccccCHHHHc-cCCCCcEEEEcCCCcccCHHHH Q psy13054 1021 TKDTEQLIGRKQFS-LMKPTAILVNTSRGGLLDQEAL 1056 (1128) Q Consensus 1021 t~~T~~li~~~~l~-~mk~ga~lIN~aRG~lVde~aL 1056 (1128) .+ -+. ++.+.+. .|+ +.+++++ |+- .|.+.+ T Consensus 399 ~~-f~~-~d~~~~~~~~~-~~~i~D~-r~~-~~~~~~ 430 (446) T 4a7p_A 399 DA-FRA-LDLTRIKNSLK-SPVLVDL-RNI-YPPAEL 430 (446) T ss_dssp TT-TTS-CCHHHHHTTBS-SCBEECS-SCC-SCHHHH T ss_pred HH-hhc-CCHHHHHHhcC-CCEEEEC-CCC-CCHHHH Confidence 43 332 4655554 465 4678875 654 455544 |
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
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Probab=93.85 E-value=0.061 Score=59.93 Aligned_cols=95 Identities=14% Similarity=0.205 Sum_probs=61.0 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hh--hcCC------c--ccChHhhhccCCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GT--ALGA------Q--LVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~--~~g~------~--~~~l~ell~~sDvV~l~lPlt 1021 (1128) .++|+|||.|.+|..+|..|...|. +|.++|....+.. .. ..+. . ..+-.+.++.+|+|+++++.. T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~~ 86 (319) T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR 86 (319) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCCC Confidence 3589999999999999999988888 9999987643322 11 1121 1 111235678999999999632 Q ss_pred ccccc------------ccC--HHHHccCCCCcEEEEcCCCccc Q psy13054 1022 KDTEQ------------LIG--RKQFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1022 ~~T~~------------li~--~~~l~~mk~ga~lIN~aRG~lV 1051 (1128) ...+ ++. .+.++...+++++|+++-|--+ T Consensus 87 -~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~ 129 (319) T 1lld_A 87 -QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDI 129 (319) T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHH T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHH Confidence 2211 110 1122333689999998776533 |
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
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Probab=93.82 E-value=0.071 Score=59.14 Aligned_cols=104 Identities=14% Similarity=0.103 Sum_probs=66.0 Q ss_pred CCeEEEEEc-ChhhHHHHHHHhhCCCEEE-EEeCCCCchhhhhcCCcc-cChHhhhc--cCCEEEEecCCCcccccccCH Q psy13054 956 GATVGIVGL-GNIGLETAKLLKAFKVSKI-LYTSRRVKEEGTALGAQL-VPLDTLCA--ESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 956 gktvGIIG~-G~IG~~vA~~l~afG~~Vi-~~d~~~~~~~~~~~g~~~-~~l~ell~--~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ..+|+|+|+ |++|+.+++.++..|++++ .+||..... ...|+.. .+++++.. ..|++++++|. +....++. T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~--~~~G~~vy~sl~el~~~~~~D~viI~tP~-~~~~~~~~- 82 (288) T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT--THLGLPVFNTVREAVAATGATASVIYVPA-PFCKDSIL- 82 (288) T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCG-GGHHHHHH- T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc--eeCCeeccCCHHHHhhcCCCCEEEEecCH-HHHHHHHH- Confidence 467999999 9999999999998899854 444432101 1245543 48999988 89999999994 33333332 Q ss_pred HHHccCCCCcEEEEcCCCc-ccCHHHHHHHHhcCCc Q psy13054 1031 KQFSLMKPTAILVNTSRGG-LLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~-lVde~aL~~aL~~g~i 1065 (1128) +.++ ..... +|..+-|- .-+.+.|.++.++..+ T Consensus 83 ea~~-~Gi~~-iVi~t~G~~~~~~~~l~~~A~~~gv 116 (288) T 2nu8_A 83 EAID-AGIKL-IITITEGIPTLDMLTVKVKLDEAGV 116 (288) T ss_dssp HHHH-TTCSE-EEECCCCCCHHHHHHHHHHHHHHTC T ss_pred HHHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCC Confidence 2222 22232 34444443 2345588888877655 |
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
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Probab=93.81 E-value=0.068 Score=59.83 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=66.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhh--hh--c-------C--Ccc-cChHhhhccCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG--TA--L-------G--AQL-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~--~~--~-------g--~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128) ++|+|||.|.+|..+|..+...|. +|+.+|....+.+. .+ . . +.. .+. +.++.||+|+++.+. T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~- 80 (309) T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA- 80 (309) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC- T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC- Confidence 589999999999999999988886 89999876543321 11 1 1 122 355 678999999999853 Q ss_pred cccccc-----c--C----H---HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEE Q psy13054 1022 KDTEQL-----I--G----R---KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGA 1068 (1128) Q Consensus 1022 ~~T~~l-----i--~----~---~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~ga 1068 (1128) |...++ + | . +.+....|++++|+.+-.-=+....+.+. +...++.|. T Consensus 81 p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~~~~~~~~~~rviG~ 143 (309) T 1ur5_A 81 PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKERVIGQ 143 (309) T ss_dssp --------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEC T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHHHHHcCCCHHHEEEC Confidence 222221 0 1 1 22334458999999855332223333232 223356665 |
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
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Probab=93.80 E-value=0.1 Score=58.56 Aligned_cols=116 Identities=18% Similarity=0.173 Sum_probs=69.3 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhh--cCC------cc-cChHhhhccCCEEEEecCCCc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTA--LGA------QL-VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~--~g~------~~-~~l~ell~~sDvV~l~lPlt~ 1022 (1128) ..+|+|||.|.+|..++-.+...|. +++++|....+.+ ..+ ... +. .+-.+.++.||+|+++.+.. T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p- 85 (318) T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN- 85 (318) T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-- T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCC- Confidence 3689999999999999999988777 9999997764432 111 111 11 12356799999999999843 Q ss_pred ccccc-------cC----H---HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE--Eec Q psy13054 1023 DTEQL-------IG----R---KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG--LDV 1072 (1128) Q Consensus 1023 ~T~~l-------i~----~---~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa--LDV 1072 (1128) ...++ .| . +.+....|++++||.+-.-=+....+.+. +...++.|.+ ||+ T Consensus 86 ~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld~ 153 (318) T 1y6j_A 86 RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDS 153 (318) T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHH T ss_pred CCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEeccCCchHH Confidence 32222 01 0 12333468999999754433344444444 3445777763 563 |
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
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Probab=93.80 E-value=0.054 Score=61.68 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=47.2 Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEEEEeCCCCchhhhhc-CCc-ccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKILYTSRRVKEEGTAL-GAQ-LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi~~d~~~~~~~~~~~-g~~-~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .+|||||+|.||+. .++.++.. +++++++.++......... +.. +.++++++. +.|+|++++|.. T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (358) T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSG 76 (358) T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTT T ss_pred ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcH Confidence 47999999999997 67878766 7888755444332223333 443 358999998 789999999954 |
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
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Probab=93.74 E-value=0.14 Score=63.94 Aligned_cols=133 Identities=15% Similarity=0.169 Sum_probs=88.9 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhh---------------c-------CCcccChHhhhccCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTA---------------L-------GAQLVPLDTLCAESD 1012 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~---------------~-------g~~~~~l~ell~~sD 1012 (1128) =++|||||.|.||..+|..+...|++|+++|....... ... . .....+-.+.++.|| T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD 395 (742) T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVD 395 (742) T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCS T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCC Confidence 47899999999999999999999999999997654221 000 0 011222334578999 Q ss_pred EEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEE Q psy13054 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVL 1092 (1128) Q Consensus 1013 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvil 1092 (1128) +|+=++|.+-+.++=+=++.=+.++++++|-....+ +....|.++++. +=..+++=-|.+-| --||.. ||- T Consensus 396 lVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~~-p~r~ig~HFfnP~~---~m~LVE---vi~ 466 (742) T 3zwc_A 396 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTDR-PQLVIGTHFFSPAH---VMRLLE---VIP 466 (742) T ss_dssp EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEECCSSTT---TCCEEE---EEE T ss_pred EEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcCC-ccccccccccCCCC---CCceEE---Eec Confidence 999999998887765545666778999998765444 455667766543 33455666554322 234443 566 Q ss_pred CCCCC Q psy13054 1093 TPHTS 1097 (1128) Q Consensus 1093 TPHia 1097 (1128) +|+.+ T Consensus 467 g~~Ts 471 (742) T 3zwc_A 467 SRYSS 471 (742) T ss_dssp CSSCC T ss_pred CCCCC Confidence 66644 |
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
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Probab=93.74 E-value=0.23 Score=56.10 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=69.1 Q ss_pred cCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh--h--------hhcCCc---ccChHhhhccCCEEEEec Q psy13054 954 LKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE--G--------TALGAQ---LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 954 L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~--------~~~g~~---~~~l~ell~~sDvV~l~l 1018 (1128) +.|.+|++||=| ++.+..+..+..||++|.+..|..-.+. . ++.|.. ..+++|.++.+|||..-. T Consensus 153 l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~ 232 (333) T 1duv_G 153 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV 232 (333) T ss_dssp GGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC T ss_pred CCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCC Confidence 789999999986 9999999999999999998876543221 1 144533 248999999999999733 Q ss_pred C--CC------cc-----cccccCHHHHccC-CCCcEEEEcC Q psy13054 1019 A--LT------KD-----TEQLIGRKQFSLM-KPTAILVNTS 1046 (1128) Q Consensus 1019 P--lt------~~-----T~~li~~~~l~~m-k~ga~lIN~a 1046 (1128) = .. ++ ...-++.+.++.+ ||+++|.-+. T Consensus 233 w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL 274 (333) T 1duv_G 233 WVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL 274 (333) T ss_dssp SSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS T ss_pred ccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC Confidence 3 01 01 1245799999999 9999998774 |
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
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Probab=93.70 E-value=0.45 Score=53.49 Aligned_cols=94 Identities=13% Similarity=0.103 Sum_probs=67.0 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--h--------hhcCCc--c-cChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--G--------TALGAQ--L-VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~--------~~~g~~--~-~~l~ell~~sDvV~l~l 1018 (1128) .+.|++|++||= +++.+..+..+..+|++|.+..|..-.+. . ...|.. . .+++|.++.+|||..-. T Consensus 154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~ 233 (323) T 3gd5_A 154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV 233 (323) T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec Confidence 378999999997 57888888889999999998877543221 1 123432 2 38999999999998643 Q ss_pred CCC-------cc-----cccccCHHHHccCCCCcEEEEcC Q psy13054 1019 ALT-------KD-----TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1019 Plt-------~~-----T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) =-. ++ ...-++.+.++.+|++++|.-+. T Consensus 234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl 273 (323) T 3gd5_A 234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL 273 (323) T ss_dssp CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS T ss_pred eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC Confidence 110 11 12357999999999999998764 |
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
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Probab=93.70 E-value=0.051 Score=60.33 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=33.8 Q ss_pred hhhhhhhcCccccccccccCCccCCCCCCEEEEEe-cChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 674 EGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 674 ~~~~~~r~G~W~~~~~~~~~~~~~~l~gktvGIiG-~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +.++..++..|..-. ...++||||| +|+||+.+|+.++..|.+|.+|++. T Consensus 4 ~~~~~~~~~~~~~~~----------~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~ 54 (298) T 2pv7_A 4 ESYANENQFGFKTIN----------SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRE 54 (298) T ss_dssp ---------CCCCSC----------TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT T ss_pred hHHhhhhccCccccC----------CCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECC Confidence 344566677785321 1357899999 9999999999999999999999864 |
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
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Probab=93.69 E-value=0.41 Score=54.49 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=68.9 Q ss_pred ccCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCchh--h--------hhcCCc---ccChHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKEE--G--------TALGAQ---LVPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~--------~~~g~~---~~~l~ell~~sDvV~l~ 1017 (1128) .+.|.+|++||=| ++.+..+..+..||++|.+..|..-.+. . ++.|.+ ..+++|.++.+|||..- T Consensus 173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd 252 (359) T 2w37_A 173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD 252 (359) T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC T ss_pred CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc Confidence 3789999999996 9999999999999999998876543221 1 134533 24899999999999973 Q ss_pred cC--CC----cc-----cccccCHHHHccCC---CCcEEEEcCC Q psy13054 1018 CA--LT----KD-----TEQLIGRKQFSLMK---PTAILVNTSR 1047 (1128) Q Consensus 1018 lP--lt----~~-----T~~li~~~~l~~mk---~ga~lIN~aR 1047 (1128) .= .. ++ ...-++.+.++.+| ++++|.-+.- T Consensus 253 ~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP 296 (359) T 2w37_A 253 VWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLP 296 (359) T ss_dssp CSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSC T ss_pred ccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCC Confidence 32 01 01 12456888888888 8888887643 |
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
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Probab=93.68 E-value=0.079 Score=60.18 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=44.0 Q ss_pred eEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchh---hhhcCCccc------------------ChHhhhccCCEEE Q psy13054 958 TVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEE---GTALGAQLV------------------PLDTLCAESDFIF 1015 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~---~~~~g~~~~------------------~l~ell~~sDvV~ 1015 (1128) +|||+|+|+||+.+++.+... ++++++..++..... +...++... ++++++.++|+|+ T Consensus 3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~ 82 (340) T 1b7g_O 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (340) T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE T ss_pred EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE Confidence 799999999999999999754 678877665543221 222222211 3445667899999 Q ss_pred EecCCC Q psy13054 1016 VTCALT 1021 (1128) Q Consensus 1016 l~lPlt 1021 (1128) .|+|.. T Consensus 83 ~aTp~~ 88 (340) T 1b7g_O 83 DTTPNG 88 (340) T ss_dssp ECCSTT T ss_pred ECCCCc Confidence 999954 |
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
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Probab=93.68 E-value=0.072 Score=60.78 Aligned_cols=65 Identities=14% Similarity=0.326 Sum_probs=46.2 Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEEEEeCCCCchhhhhc-CCc-ccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKILYTSRRVKEEGTAL-GAQ-LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi~~d~~~~~~~~~~~-g~~-~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .+|||||+|.||+. .++.++.. +++++++.++......... +.. +.++++++. +.|+|++++|.. T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (364) T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNA 78 (364) T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGG T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChH Confidence 47999999999997 77777766 7887754433332222222 343 358999998 789999999953 |
>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
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Probab=93.67 E-value=0.13 Score=60.31 Aligned_cols=109 Identities=15% Similarity=0.148 Sum_probs=75.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC--------chh-------------------hhhcCCcccChH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--------KEE-------------------GTALGAQLVPLD 1005 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~--------~~~-------------------~~~~g~~~~~l~ 1005 (1128) ++.|+||.|=|+|++|...|+.|...|++|++.++... ..+ ..+.+.++.+-+ T Consensus 232 ~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~~~ 311 (450) T 4fcc_A 232 GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQ 311 (450) T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEETC T ss_pred CcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEecCc Confidence 48899999999999999999999999999987654321 100 111233444334 Q ss_pred hhh-ccCCEEEEecCCCcccccccCHHHHccCCCC--cEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1006 TLC-AESDFIFVTCALTKDTEQLIGRKQFSLMKPT--AILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1006 ell-~~sDvV~l~lPlt~~T~~li~~~~l~~mk~g--a~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) +++ -.|||.+=|. +.+.|+.+...+++.. .++++-+-+.+- .+| .+.|.+..|..+ T Consensus 312 ~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t-~eA-~~iL~~rGIl~~ 370 (450) T 4fcc_A 312 QPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTT-IEA-TELFQQAGVLFA 370 (450) T ss_dssp CGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBC-HHH-HHHHHHTTCEEE T ss_pred ccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCC-HHH-HHHHHHCCCEEE Confidence 433 3699988553 4567999888888754 578888888754 444 366777777655 |
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
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Probab=93.64 E-value=0.054 Score=63.89 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=49.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcC-Cc-----c---cChHhhhccCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALG-AQ-----L---VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g-~~-----~---~~l~ell~~sDvV~l~lPlt 1021 (1128) .+++|+|+|.|.||+.+++.|...|.+|.+++++..+.. ....+ +. . .+++++++.+|+|++++|.. T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450) T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450) T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC-- T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc Confidence 478999999999999999999999999999987654433 11111 11 1 13557788999999999964 |
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
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Probab=93.62 E-value=0.069 Score=61.05 Aligned_cols=89 Identities=28% Similarity=0.415 Sum_probs=65.7 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc----C---hHhhhccCCEEEEecCCCccccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV----P---LDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~----~---l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .|.+|.|+|.|.||...++.++.+|++|++.+....+.+ +++.|+..+ + ++++....|+|+.++..... T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~--- 270 (369) T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN--- 270 (369) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC--- T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH--- Confidence 578999999999999999999999999998887665544 555665432 1 23334568999988874321 Q ss_pred ccCHHHHccCCCCcEEEEcCCC Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG 1048 (1128) + ...++.|+++..+|.++-. T Consensus 271 -~-~~~~~~l~~~G~iv~~G~~ 290 (369) T 1uuf_A 271 -L-DDFTTLLKRDGTMTLVGAP 290 (369) T ss_dssp -H-HHHHTTEEEEEEEEECCCC T ss_pred -H-HHHHHHhccCCEEEEeccC Confidence 1 3567888999999988754 |
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
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Probab=93.61 E-value=0.059 Score=61.57 Aligned_cols=66 Identities=21% Similarity=0.105 Sum_probs=47.2 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc--------ccChHhhhccCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ--------LVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~--------~~~l~ell~~sDvV~l~lPlt 1021 (1128) +.++|+|+|.|.+|+.+|+.|.. ..+|.++|....+.+....... ..++.++++++|+|++++|.. T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365) T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365) T ss_dssp -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG T ss_pred CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc Confidence 44579999999999999999976 4688888865544331111111 124778899999999999954 |
>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
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Probab=93.61 E-value=0.07 Score=60.30 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=70.6 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhh--c------CCcc-cChHhhhccCCEEEEecCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTA--L------GAQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~--~------g~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) -.+++|+|||.|.||..+|..+...|. +++++|....+.. +.+ . ..+. .+..+.++.||+|+++... T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326) T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326) T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC Confidence 356799999999999999999987776 8999997554332 111 1 1111 2446789999999998753 Q ss_pred Cc---ccc-ccc--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHHH--hcCCceEE--EEe Q psy13054 1021 TK---DTE-QLI--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEFL--KDKKIGGA--GLD 1071 (1128) Q Consensus 1021 t~---~T~-~li--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~aL--~~g~i~ga--aLD 1071 (1128) .. +|| .++ |. +.+....|++++++++-.-=+....+.+.- ...++.|. .|| T Consensus 87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~~k~~g~p~~rviG~gt~LD 154 (326) T 3vku_A 87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLD 154 (326) T ss_dssp C----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHH T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHHHHhcCCCHHHeeeecccCc Confidence 21 122 122 11 234556789999999754333333333321 22355554 356 |
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
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Probab=93.55 E-value=0.62 Score=52.52 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=67.2 Q ss_pred ccCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCc--hh------hh----h--cCCc--c-cChHhhhccCCE Q psy13054 953 GLKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVK--EE------GT----A--LGAQ--L-VPLDTLCAESDF 1013 (1128) Q Consensus 953 ~L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~--~~------~~----~--~g~~--~-~~l~ell~~sDv 1013 (1128) .+.|++|++||=+ ++.+..+..+..||++|.+..|..-. +. +. . .|.. . .+++|.++.+|| T Consensus 158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv 237 (328) T 3grf_A 158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV 237 (328) T ss_dssp TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE T ss_pred ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE Confidence 4789999999986 88888999999999999988775433 21 11 1 3432 2 489999999999 Q ss_pred EEEe----cCCCcc---------cccccCHHHHccCCCCcEEEEcC Q psy13054 1014 IFVT----CALTKD---------TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1014 V~l~----lPlt~~---------T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) |..- +...++ ...-++.+.++.+|++++|.-+. T Consensus 238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l 283 (328) T 3grf_A 238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL 283 (328) T ss_dssp EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS T ss_pred EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC Confidence 9863 221111 12347999999999999998764 |
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
---|
Probab=93.54 E-value=0.074 Score=59.77 Aligned_cols=116 Identities=18% Similarity=0.237 Sum_probs=72.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchhh--h---h------cCCcc-cChHhhhccCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEEG--T---A------LGAQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~--~---~------~g~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) ...+|+|||.|.+|.+++..+...|. ++++||....+.+. . . ...+. .+..+.++.||+|+++.+. T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~ 84 (317) T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA 84 (317) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC Confidence 34689999999999999999876664 89999865432221 1 1 01111 1456789999999999974 Q ss_pred Ccccccc-----c--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE--Ee Q psy13054 1021 TKDTEQL-----I--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG--LD 1071 (1128) Q Consensus 1021 t~~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa--LD 1071 (1128) .. ..+. + |. +.+....|++++||++-.-=+...++.+. +...++.|.+ || T Consensus 85 ~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~gt~lD 152 (317) T 3d0o_A 85 AQ-KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILD 152 (317) T ss_dssp CC-CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHH T ss_pred CC-CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEecCcccc Confidence 32 2221 0 11 23344479999999874443444444444 3444676763 46 |
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
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Probab=93.50 E-value=0.11 Score=58.40 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=47.8 Q ss_pred CeEEEEEcChhhH-HHHHHHhhCCCEEE-EEeCCCCchh--hhhc-CCc-ccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGL-ETAKLLKAFKVSKI-LYTSRRVKEE--GTAL-GAQ-LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~-~vA~~l~afG~~Vi-~~d~~~~~~~--~~~~-g~~-~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .+|||||+|.+|. .+++.++.-|++++ ++|+...+.. ++.. +.. +.++++++. +.|+|++++|.. T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 77 (336) T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPC 77 (336) T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGG T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChh Confidence 4799999999996 67777776788865 5666555543 3344 333 458999997 689999999943 |
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
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Probab=93.47 E-value=0.14 Score=58.48 Aligned_cols=89 Identities=19% Similarity=0.213 Sum_probs=64.4 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc--------ChHhhhc-----cCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV--------PLDTLCA-----ESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~--------~l~ell~-----~sDvV~l~lP 1019 (1128) .|++|.|+|.|.||...++.++.+|+ +|++.+....+.+ +++.|+..+ ++.+.+. ..|+|+.++. T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374) T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 271 (374) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC Confidence 57899999999999999999999999 7888876655544 556665321 2333332 4799998876 Q ss_pred CCcccccccCHHHHccCCCC-cEEEEcCCC Q psy13054 1020 LTKDTEQLIGRKQFSLMKPT-AILVNTSRG 1048 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~g-a~lIN~aRG 1048 (1128) ..+. + ...++.++++ ..+|.++-. T Consensus 272 ~~~~----~-~~~~~~l~~~~G~iv~~G~~ 296 (374) T 1cdo_A 272 NVGV----M-RNALESCLKGWGVSVLVGWT 296 (374) T ss_dssp CHHH----H-HHHHHTBCTTTCEEEECSCC T ss_pred CHHH----H-HHHHHHhhcCCcEEEEEcCC Confidence 4222 1 3567888998 888888743 |
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
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Probab=93.44 E-value=0.079 Score=60.26 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=47.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhC--------CCEEEE-EeCCCCchh--hhhcCCc--ccChHhhhcc--CCEEEEe Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAF--------KVSKIL-YTSRRVKEE--GTALGAQ--LVPLDTLCAE--SDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~af--------G~~Vi~-~d~~~~~~~--~~~~g~~--~~~l~ell~~--sDvV~l~ 1017 (1128) .++--+|||||+|.||+.-++.++++ ++++++ +|++..+.+ ++++++. +.+++++++. -|+|+++ T Consensus 22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Ia 101 (393) T 4fb5_A 22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVT 101 (393) T ss_dssp --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEEC T ss_pred CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEEC Confidence 45556899999999999877766543 567665 455555444 4556764 4589999964 7999999 Q ss_pred cCCC Q psy13054 1018 CALT 1021 (1128) Q Consensus 1018 lPlt 1021 (1128) +|.. T Consensus 102 tP~~ 105 (393) T 4fb5_A 102 TPNQ 105 (393) T ss_dssp SCGG T ss_pred CChH Confidence 9943 |
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
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Probab=93.43 E-value=0.097 Score=55.22 Aligned_cols=72 Identities=15% Similarity=0.127 Sum_probs=51.8 Q ss_pred cccccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC-cc------cChHhhhccCCEEEEecCC Q psy13054 950 NIMGLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA-QL------VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 950 ~~~~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~-~~------~~l~ell~~sDvV~l~lPl 1020 (1128) ....+.|++|.|.|. |.||+.+++.|..-|.+|++.+++..+.. ....++ .. .++.+.+...|+|+.+... T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236) T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS 94 (236) T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC Confidence 344799999999998 99999999999999999999987665443 222233 22 3467788899999988775 Q ss_pred C Q psy13054 1021 T 1021 (1128) Q Consensus 1021 t 1021 (1128) . T Consensus 95 ~ 95 (236) T 3e8x_A 95 G 95 (236) T ss_dssp C T ss_pred C Confidence 4 |
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
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Probab=93.41 E-value=0.049 Score=64.65 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=52.6 Q ss_pred cCHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 312 VPLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 312 vsLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) .+++|+++. +|+|++++|-...+...+ ++....+++|.++|+++.|...+...+.+.+++..+. T Consensus 57 ~s~~e~v~~l~~aDvVilavp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~ 123 (474) T 2iz1_A 57 KTLEEFVGSLEKPRRIMLMVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN 123 (474) T ss_dssp SSHHHHHHTBCSSCEEEECCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE T ss_pred CCHHHHHhhccCCCEEEEEccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe Confidence 389999886 999999999887787777 3455678999999999999877888898888764443 |
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
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Probab=93.37 E-value=0.072 Score=60.54 Aligned_cols=105 Identities=12% Similarity=0.178 Sum_probs=65.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEE-EEeCCCCchh--hhhcCC----c-ccChHhhhc--cCCEEEEecCCCcccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKI-LYTSRRVKEE--GTALGA----Q-LVPLDTLCA--ESDFIFVTCALTKDTE 1025 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi-~~d~~~~~~~--~~~~g~----~-~~~l~ell~--~sDvV~l~lPlt~~T~ 1025 (1128) .+|||||+|.||+.+++.++.. +++++ ++|+...+.. +...++ . +.++++++. +.|+|++++|..... T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~- 85 (362) T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV- 85 (362) T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH- T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH- Confidence 4799999999999999998775 67765 4554433332 334453 2 358999986 599999999933211 Q ss_pred cccCHHHHccCCCCc-EEEEc-CCCcccCHHHHHHHHhcCCce Q psy13054 1026 QLIGRKQFSLMKPTA-ILVNT-SRGGLLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga-~lIN~-aRG~lVde~aL~~aL~~g~i~ 1066 (1128) .-..+.++.|. +++.- ---.+-+.++|.++.++..+. T Consensus 86 ----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~ 124 (362) T 1ydw_A 86 ----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 124 (362) T ss_dssp ----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC T ss_pred ----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE Confidence 12234455665 44432 112233456777777665543 |
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
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Probab=93.36 E-value=0.056 Score=60.88 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=63.8 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------ChHhhh----ccCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PLDTLC----AESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell----~~sDvV~l~lPlt~~ 1023 (1128) .|++|.|+|.|.||...++.++.+|++|++.+++..+.+ .++.|+..+ ++.+.+ ...|+|+.+....+. T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~ 243 (339) T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA 243 (339) T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH Confidence 478999999999999999999999999998886554443 445565321 222222 358999988764222 Q ss_pred cccccCHHHHccCCCCcEEEEcCCC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) -...++.|+++..+|.++.. T Consensus 244 -----~~~~~~~l~~~G~~v~~g~~ 263 (339) T 1rjw_A 244 -----FQSAYNSIRRGGACVLVGLP 263 (339) T ss_dssp -----HHHHHHHEEEEEEEEECCCC T ss_pred -----HHHHHHHhhcCCEEEEeccc Confidence 14567788899999988754 |
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
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Probab=93.32 E-value=0.79 Score=51.88 Aligned_cols=93 Identities=9% Similarity=0.158 Sum_probs=64.8 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--h--------hhcCCc--c-cChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--G--------TALGAQ--L-VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~--------~~~g~~--~-~~l~ell~~sDvV~l~l 1018 (1128) .+.|++|++||= +++.+..+..+..||++|.+..|..-.+. . ...|.. . .+++ .++.+|||..-+ T Consensus 172 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~ 250 (339) T 4a8t_A 172 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV 250 (339) T ss_dssp CGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECC T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecC Confidence 378999999997 67888888999999999998877543221 1 223533 2 3788 999999999632 Q ss_pred --CCC--c----c----c--ccccCHHHHccCCCCcEEEEcC Q psy13054 1019 --ALT--K----D----T--EQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1019 --Plt--~----~----T--~~li~~~~l~~mk~ga~lIN~a 1046 (1128) +.. + + . ..-++.+.++.+|++++|.-+. T Consensus 251 w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL 292 (339) T 4a8t_A 251 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL 292 (339) T ss_dssp SSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS T ss_pred cccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC Confidence 111 1 1 1 1346788888888888887664 |
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
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Probab=93.31 E-value=0.16 Score=58.08 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=56.1 Q ss_pred CCCeEEEEE-cChhhHHHHHHHhhCC-CEEEEEeCCCCchh-hh-h----cC-----CcccChHhhhccCCEEEEecCCC Q psy13054 955 KGATVGIVG-LGNIGLETAKLLKAFK-VSKILYTSRRVKEE-GT-A----LG-----AQLVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG-~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~-~~-~----~g-----~~~~~l~ell~~sDvV~l~lPlt 1021 (1128) ...+|||+| +|.||+.+++.|.... ++++...++.+... .. . .+ ....+ ++.+..+|+|+.|+|.. T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~ 93 (359) T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG 93 (359) T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch Confidence 346899999 8999999999997664 57777765543221 11 0 11 11112 55667899999999944 Q ss_pred cccccccCHHHHccCCCCcEEEEcCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .. .+.....+.|+.+|+.+- T Consensus 94 ~s------~~~a~~~~aG~~VId~sa 113 (359) T 1xyg_A 94 TT------QEIIKELPTALKIVDLSA 113 (359) T ss_dssp TH------HHHHHTSCTTCEEEECSS T ss_pred hH------HHHHHHHhCCCEEEECCc Confidence 22 333333367889998865 |
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
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Probab=93.22 E-value=0.15 Score=58.17 Aligned_cols=88 Identities=24% Similarity=0.290 Sum_probs=62.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc--------ChHhhhc-----cCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV--------PLDTLCA-----ESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~--------~l~ell~-----~sDvV~l~lP 1019 (1128) .|++|.|+|.|.||...++.++.+|+ +|++.+....+.+ +++.|+..+ ++.+.+. ..|+|+.++. T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374) T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC Confidence 57899999999999999999999999 7888876665544 555665421 2333222 4789888876 Q ss_pred CCcccccccCHHHHccCCCC-cEEEEcCC Q psy13054 1020 LTKDTEQLIGRKQFSLMKPT-AILVNTSR 1047 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~g-a~lIN~aR 1047 (1128) .. ++ + ...++.++++ ..+|.++- T Consensus 271 ~~-~~---~-~~~~~~l~~~~G~iv~~G~ 294 (374) T 2jhf_A 271 RL-DT---M-VTALSCCQEAYGVSVIVGV 294 (374) T ss_dssp CH-HH---H-HHHHHHBCTTTCEEEECSC T ss_pred CH-HH---H-HHHHHHhhcCCcEEEEecc Confidence 32 22 1 3567778888 88888764 |
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
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Probab=93.21 E-value=0.33 Score=54.32 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=67.1 Q ss_pred ccCCCeEEEEEc---ChhhHHHHHHHhhC-CCEEEEEeCCCCchh------hhhcCCcc---cChHhhhccCCEEEEecC Q psy13054 953 GLKGATVGIVGL---GNIGLETAKLLKAF-KVSKILYTSRRVKEE------GTALGAQL---VPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 953 ~L~gktvGIIG~---G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~------~~~~g~~~---~~l~ell~~sDvV~l~lP 1019 (1128) .+.|++|++||= |++.+..+..+..| |++|.+..|..-.+. +++.|.+. .+++|.++.+|||..-.= T Consensus 151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~ 230 (310) T 3csu_A 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV 230 (310) T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC- T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc Confidence 378999999998 58999999999999 999998876543221 12235432 489999999999987543 Q ss_pred CCc-----c-c----ccccCHHHHccCCCCcEEEEcC Q psy13054 1020 LTK-----D-T----EQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1020 lt~-----~-T----~~li~~~~l~~mk~ga~lIN~a 1046 (1128) -.+ + . ..-++.+.++.+||+++|.-+. T Consensus 231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 267 (310) T 3csu_A 231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 267 (310) T ss_dssp ----------------CCBCGGGGTTCCTTCEEECCS T ss_pred cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC Confidence 211 1 0 2346888888888888887664 |
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
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Probab=93.20 E-value=0.16 Score=57.39 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=72.4 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--h---hh------cCC--cc-cChHhhhccCCEEEEec Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--G---TA------LGA--QL-VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~---~~------~g~--~~-~~l~ell~~sDvV~l~l 1018 (1128) +..++|+|||.|.+|..+|..|...|+ +|+.+|....+.+ . .. ... .. .+. +.++.||+|+++. T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa 83 (324) T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA 83 (324) T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc Confidence 456799999999999999999987777 9999998776542 1 11 112 21 234 7899999999997 Q ss_pred CCCcccccc-----c--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHHH--hcCCceEEE Q psy13054 1019 ALTKDTEQL-----I--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEFL--KDKKIGGAG 1069 (1128) Q Consensus 1019 Plt~~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~aL--~~g~i~gaa 1069 (1128) +. |...++ + |. +.+....|++++|+++-.-=+....+.+.- ...++.|.+ T Consensus 84 g~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~ 149 (324) T 3gvi_A 84 GV-PRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWALQKFSGLPAHKVVGMA 149 (324) T ss_dssp SC-CCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC T ss_pred Cc-CCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeec Confidence 63 222222 1 21 123344689999999865444444444431 224566665 |
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
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Probab=93.19 E-value=0.073 Score=63.59 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=52.7 Q ss_pred CHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 313 PLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 313 sLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) +++|+++. ||+|++++|-...++..+ ++....+++|.++|+++-|.-.+...+.+.|++..+ T Consensus 64 s~~e~v~~l~~aDvVil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~ 128 (497) T 2p4q_A 64 SIEDFISKLKRPRKVMLLVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGI 128 (497) T ss_dssp SHHHHHHTSCSSCEEEECCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC T ss_pred CHHHHHhcCCCCCEEEEEcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCC Confidence 89999887 999999999877888888 455678899999999999887788889888887433 |
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
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Probab=93.18 E-value=0.074 Score=62.82 Aligned_cols=73 Identities=18% Similarity=0.117 Sum_probs=50.6 Q ss_pred cccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--h-hhcCCccc--Ch-HhhhccCCEEEEecCCCcc Q psy13054 950 NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--G-TALGAQLV--PL-DTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 950 ~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~-~~~g~~~~--~l-~ell~~sDvV~l~lPlt~~ 1023 (1128) .+..+.|++|.|||.|.+|.+.++.|...|++|.++++...... . .+.+++.. .+ ++.+..+|+|+. +|..++ T Consensus 6 ~~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~-at~~~~ 84 (457) T 1pjq_A 6 IFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIA-ATDDDT 84 (457) T ss_dssp EEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEE-CCSCHH T ss_pred eEEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEE-cCCCHH Confidence 34478999999999999999999999999999999998654332 1 11233321 11 234567777765 454543 |
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
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Probab=93.17 E-value=0.78 Score=51.22 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=72.3 Q ss_pred ccC-CCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCch--hh----h----hcCCcc---cChHhhhccCCEEEEe Q psy13054 953 GLK-GATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKE--EG----T----ALGAQL---VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~-gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~--~~----~----~~g~~~---~~l~ell~~sDvV~l~ 1017 (1128) .+. |++|++||= +++.+..+..+..||++|.+..|..-.+ .. . ..|... .+++|.++.+|||..- T Consensus 142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~ 221 (307) T 3tpf_A 142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD 221 (307) T ss_dssp CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec Confidence 367 999999997 5788888888999999999887754322 11 1 334332 4899999999999875 Q ss_pred c--CCCc--c--------cccccCHHHHccCCCCcEEEEcC---CCcccCHH Q psy13054 1018 C--ALTK--D--------TEQLIGRKQFSLMKPTAILVNTS---RGGLLDQE 1054 (1128) Q Consensus 1018 l--Plt~--~--------T~~li~~~~l~~mk~ga~lIN~a---RG~lVde~ 1054 (1128) . +... + ...-++.+.++.+|++++|.-+. ||.=|+.+ T Consensus 222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e 273 (307) T 3tpf_A 222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE 273 (307) T ss_dssp CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH T ss_pred CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH Confidence 4 1111 1 12447999999999999998775 56555543 |
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
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Probab=93.16 E-value=0.056 Score=60.82 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=70.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhh--cC------Ccc-cChHhhhccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTA--LG------AQL-VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~--~g------~~~-~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) .+|+|||.|.+|..++-.+...+. +++.+|....+.+ +.+ .. .+. .+..+.++.||+|+++.+... T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~- 84 (318) T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ- 84 (318) T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--- T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC- Confidence 589999999999999999976665 8999987544332 111 11 111 245678999999999987432 Q ss_pred cccc-------cCH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE--Ee Q psy13054 1024 TEQL-------IGR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG--LD 1071 (1128) Q Consensus 1024 T~~l-------i~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa--LD 1071 (1128) ..++ .|. +.+....|++++||++-.-=+....+.+. +...++.|.+ || T Consensus 85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD 150 (318) T 1ez4_A 85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLD 150 (318) T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEeccccch Confidence 2221 111 23344479999999855444444444444 4444676663 46 |
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
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Probab=93.13 E-value=0.057 Score=64.21 Aligned_cols=71 Identities=21% Similarity=0.217 Sum_probs=55.4 Q ss_pred cCHHHHhh---cCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecC Q psy13054 312 VPLDTLCA---ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVM 383 (1128) Q Consensus 312 vsLdeLl~---~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVf 383 (1128) .+++++++ .+|+|++++|-...+..++. +....+++|.++|+++-|...+...+.+.+.+..+...+.-|+ T Consensus 55 ~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~ 128 (482) T 2pgd_A 55 HSLEEMVSKLKKPRRIILLVKAGQAVDNFIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVS 128 (482) T ss_dssp SSHHHHHHHBCSSCEEEECSCTTHHHHHHHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEE T ss_pred CCHHHHHhhccCCCEEEEeCCChHHHHHHHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCC Confidence 38999875 89999999998777888773 4556789999999999998878888888888754443333443 |
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
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Probab=93.12 E-value=0.064 Score=60.56 Aligned_cols=112 Identities=11% Similarity=0.050 Sum_probs=69.4 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhh--cC------Ccc-cChHhhhccCCEEEEecCCCc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTA--LG------AQL-VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~--~g------~~~-~~l~ell~~sDvV~l~lPlt~ 1022 (1128) ..+|+|||.|.+|..++-.+...+. +++.+|....+.. ..+ .. .+. .+..+.++.||+|+++.+.. T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~- 87 (326) T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP- 87 (326) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC- T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC- Confidence 4689999999999999999976665 8999987554332 111 11 111 24567899999999998743 Q ss_pred ccccc-------cCH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEE Q psy13054 1023 DTEQL-------IGR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGA 1068 (1128) Q Consensus 1023 ~T~~l-------i~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~ga 1068 (1128) ...++ .|. +.+....|++++||++-.-=+....+.+. +...++.|. T Consensus 88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~ 149 (326) T 2zqz_A 88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGS 149 (326) T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEc Confidence 22222 111 12333468999999855444444444444 344467666 |
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
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Probab=93.12 E-value=0.036 Score=54.45 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=31.1 Q ss_pred CCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 701 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 701 gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) |++++|||.|.+|+.+++.+..+|.++.+|++.. T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144) T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI 54 (144) T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH Confidence 7999999999999999999999999988888643 |
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
---|
Probab=93.09 E-value=0.14 Score=58.28 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=63.8 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc--------ChHhhhc-----cCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV--------PLDTLCA-----ESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~--------~l~ell~-----~sDvV~l~lP 1019 (1128) .|++|.|+|.|.||...++.++.+|+ +|++.+....+.+ +++.|+..+ ++.+.+. ..|+|+-++. T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373) T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC Confidence 57899999999999999999999999 7888876665554 556665421 2333222 4799998876 Q ss_pred CCcccccccCHHHHccCCCC-cEEEEcCC Q psy13054 1020 LTKDTEQLIGRKQFSLMKPT-AILVNTSR 1047 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~g-a~lIN~aR 1047 (1128) .. ++ + ...++.++++ ..+|.++- T Consensus 271 ~~-~~---~-~~~~~~l~~~~G~iv~~G~ 294 (373) T 1p0f_A 271 RI-ET---M-MNALQSTYCGSGVTVVLGL 294 (373) T ss_dssp CH-HH---H-HHHHHTBCTTTCEEEECCC T ss_pred CH-HH---H-HHHHHHHhcCCCEEEEEcc Confidence 32 22 1 3567888998 88888864 |
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
---|
Probab=93.09 E-value=0.89 Score=51.70 Aligned_cols=99 Identities=9% Similarity=0.157 Sum_probs=68.2 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh--h--------hhcCCc--c-cChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE--G--------TALGAQ--L-VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~--------~~~g~~--~-~~l~ell~~sDvV~l~l 1018 (1128) .+.|++|++||= +++.+..+..+..||++|.+..|..-.+. . ...|.. . .+++ .++.+|||..-+ T Consensus 150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~ 228 (355) T 4a8p_A 150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV 228 (355) T ss_dssp CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc Confidence 378999999997 67888889999999999998877543221 1 223433 2 3788 999999999632 Q ss_pred ----CCCc----c----c--ccccCHHHHccCCCCcEEEEcC---CCcccC Q psy13054 1019 ----ALTK----D----T--EQLIGRKQFSLMKPTAILVNTS---RGGLLD 1052 (1128) Q Consensus 1019 ----Plt~----~----T--~~li~~~~l~~mk~ga~lIN~a---RG~lVd 1052 (1128) ...+ + . ..-++.+.++.+|++++|.-+. ||.=|+ T Consensus 229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt 279 (355) T 4a8p_A 229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVT 279 (355) T ss_dssp SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBC T ss_pred cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeC Confidence 1111 1 1 1446888888888888888765 454443 |
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
---|
Probab=93.08 E-value=0.076 Score=60.01 Aligned_cols=65 Identities=12% Similarity=0.173 Sum_probs=44.9 Q ss_pred CeEEEEEcChhhHH-HHH-HHh-hCCCEEE-EEeCCCCchh-hhh-cCCc-ccChHhhhcc--CCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLE-TAK-LLK-AFKVSKI-LYTSRRVKEE-GTA-LGAQ-LVPLDTLCAE--SDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~-~l~-afG~~Vi-~~d~~~~~~~-~~~-~g~~-~~~l~ell~~--sDvV~l~lPlt 1021 (1128) .+|||||+|.||+. .+. .++ .-+++++ ++|+...+.. ... .++. +.++++++.. .|+|++++|.. T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 76 (345) T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHAD 76 (345) T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGG T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChH Confidence 37999999999996 455 434 3478887 5565544433 222 2444 3589999986 89999999954 |
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
---|
Probab=93.02 E-value=0.099 Score=59.33 Aligned_cols=88 Identities=26% Similarity=0.331 Sum_probs=65.3 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-hcCCccc----C---hHhhhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-ALGAQLV----P---LDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-~~g~~~~----~---l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .|++|.|+|.|.||...++.++.+|++|++.+....+.+ +. +.|+..+ + +.++....|+|+-++..... T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~-- 257 (357) T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA-- 257 (357) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC-- T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH-- Confidence 578999999999999999999999999999987766544 34 6665432 2 22333457999988874322 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) -...++.++++..+|.++- T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357) T 2cf5_A 258 ---LEPYLSLLKLDGKLILMGV 276 (357) T ss_dssp ---SHHHHTTEEEEEEEEECSC T ss_pred ---HHHHHHHhccCCEEEEeCC Confidence 2356778899999998874 |
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
---|
Probab=93.01 E-value=0.052 Score=62.45 Aligned_cols=65 Identities=17% Similarity=0.299 Sum_probs=48.4 Q ss_pred CeEEEEEcC-hhhHHHHHHHhhC-CCEEEE-EeCCCCchh--hhhcCCcc-cChHhhhcc--CCEEEEecCCC Q psy13054 957 ATVGIVGLG-NIGLETAKLLKAF-KVSKIL-YTSRRVKEE--GTALGAQL-VPLDTLCAE--SDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G-~IG~~vA~~l~af-G~~Vi~-~d~~~~~~~--~~~~g~~~-~~l~ell~~--sDvV~l~lPlt 1021 (1128) .+|||||+| .+|+..++.++.. ++++++ +|+...+.. +...++.. .+++++++. .|+|++++|.. T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~ 75 (387) T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQ 75 (387) T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGG T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcH Confidence 479999999 9999999998776 677764 454433332 34556653 489999975 99999999943 |
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
---|
Probab=93.01 E-value=0.19 Score=51.86 Aligned_cols=93 Identities=12% Similarity=0.117 Sum_probs=61.4 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCccc--ChH----hhhccCCEEEEecCCCcccccc-- Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLV--PLD----TLCAESDFIFVTCALTKDTEQL-- 1027 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~--~l~----ell~~sDvV~l~lPlt~~T~~l-- 1027 (1128) ++|.|.|. |.||+.+++.|..-|.+|++.+++..+......++..+ ++. +.+...|+|+.+.......... T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~ 80 (221) T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV 80 (221) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH Confidence 36899995 99999999999999999999987654433111233321 222 6788999999888765432211 Q ss_pred -cCHHHHccCCC--CcEEEEcCCCc Q psy13054 1028 -IGRKQFSLMKP--TAILVNTSRGG 1049 (1128) Q Consensus 1028 -i~~~~l~~mk~--ga~lIN~aRG~ 1049 (1128) .....++.|+. ...+|++|... T Consensus 81 ~~~~~l~~a~~~~~~~~~v~~SS~~ 105 (221) T 3ew7_A 81 TSLDHLISVLNGTVSPRLLVVGGAA 105 (221) T ss_dssp HHHHHHHHHHCSCCSSEEEEECCCC T ss_pred HHHHHHHHHHHhcCCceEEEEecce Confidence 12345566654 36788877654 |
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
---|
Probab=93.01 E-value=0.16 Score=51.66 Aligned_cols=96 Identities=20% Similarity=0.173 Sum_probs=60.4 Q ss_pred CCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchhhh-hcCCcc--------cChHhhhccCCEEEEecCCCcc-- Q psy13054 956 GATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEEGT-ALGAQL--------VPLDTLCAESDFIFVTCALTKD-- 1023 (1128) Q Consensus 956 gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~-~~g~~~--------~~l~ell~~sDvV~l~lPlt~~-- 1023 (1128) +++|.|.|. |.||+.+++.|..-|.+|++.+++..+.... ..++.. .++.++++.+|+|+.+...... T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~ 82 (206) T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLS 82 (206) T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCCS T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCCCC Confidence 478999998 9999999999999999999998665432210 112221 2456788899999988775432 Q ss_pred --ccccc-CHHHHccCCC--CcEEEEcCCCccc Q psy13054 1024 --TEQLI-GRKQFSLMKP--TAILVNTSRGGLL 1051 (1128) Q Consensus 1024 --T~~li-~~~~l~~mk~--ga~lIN~aRG~lV 1051 (1128) ..++. ....++.+++ -..+|++|..... T Consensus 83 ~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~ 115 (206) T 1hdo_A 83 PTTVMSEGARNIVAAMKAHGVDKVVACTSAFLL 115 (206) T ss_dssp CCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGT T ss_pred ccchHHHHHHHHHHHHHHhCCCeEEEEeeeeec Confidence 00000 1122333321 2378888776543 |
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
---|
Probab=93.00 E-value=0.15 Score=57.89 Aligned_cols=89 Identities=19% Similarity=0.249 Sum_probs=64.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc---C---hH----hhh----ccCCEEEEec Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV---P---LD----TLC----AESDFIFVTC 1018 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~---~---l~----ell----~~sDvV~l~l 1018 (1128) .|++|.|+|.|.||...++.++.+|+ +|++.+....+.+ +++.|+..+ + -+ ++. ...|+|+.++ T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356) T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC Confidence 47899999999999999999999999 8988886655444 556665421 1 11 222 2489999888 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) ...+. + ...++.++++..+|.++-+ T Consensus 251 g~~~~----~-~~~~~~l~~~G~iv~~G~~ 275 (356) T 1pl8_A 251 GAEAS----I-QAGIYATRSGGTLVLVGLG 275 (356) T ss_dssp CCHHH----H-HHHHHHSCTTCEEEECSCC T ss_pred CChHH----H-HHHHHHhcCCCEEEEEecC Confidence 74321 1 3567889999999998753 |
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
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Probab=92.94 E-value=0.035 Score=60.08 Aligned_cols=60 Identities=5% Similarity=0.004 Sum_probs=47.2 Q ss_pred CCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHc Q psy13054 308 GAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKD 372 (1128) Q Consensus 308 g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~s 372 (1128) |++ .++++++++||+|++++|-......+ .+.+..+++ ++|+++.+...+.+.|.+.+.. T Consensus 45 g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~ 104 (264) T 1i36_A 45 GVT-ETSEEDVYSCPVVISAVTPGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEK 104 (264) T ss_dssp TCE-ECCHHHHHTSSEEEECSCGGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSS T ss_pred CCc-CCHHHHHhcCCEEEEECCCHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhh Confidence 444 68889999999999999976655554 455667887 9999998877677788888866 |
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
---|
Probab=92.93 E-value=0.055 Score=61.13 Aligned_cols=88 Identities=19% Similarity=0.243 Sum_probs=60.2 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHhhhc------cCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDTLCA------ESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell~------~sDvV~l~lPl 1020 (1128) .|++|.|+|.|.||...++.++.+|+ +|++.++...+.+ .++.|+..+ ++.+.+. ..|+|+.+++. T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~ 246 (348) T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA 246 (348) T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC Confidence 68899999999999999999999999 8998876644433 445554321 2222221 46888877763 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .+. + ...++.|+++..+|.++. T Consensus 247 ~~~----~-~~~~~~l~~~G~iv~~g~ 268 (348) T 2d8a_A 247 PKA----L-EQGLQAVTPAGRVSLLGL 268 (348) T ss_dssp HHH----H-HHHHHHEEEEEEEEECCC T ss_pred HHH----H-HHHHHHHhcCCEEEEEcc Confidence 221 1 345667777778877764 |
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
---|
Probab=92.93 E-value=0.15 Score=58.01 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=63.3 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc--------ChHhhhc-----cCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV--------PLDTLCA-----ESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~--------~l~ell~-----~sDvV~l~lP 1019 (1128) .|++|.|+|.|.||...++.++.+|+ +|++.+....+.+ +++.|+..+ ++.+.+. ..|+|+.+.. T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373) T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC Confidence 57899999999999999999999999 7888876655544 555665321 2333232 4799998876 Q ss_pred CCcccccccCHHHHccCCCC-cEEEEcCC Q psy13054 1020 LTKDTEQLIGRKQFSLMKPT-AILVNTSR 1047 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~g-a~lIN~aR 1047 (1128) ..+ + + ...++.++++ ..+|.++- T Consensus 270 ~~~-~---~-~~~~~~l~~~~G~iv~~G~ 293 (373) T 2fzw_A 270 NVK-V---M-RAALEACHKGWGVSVVVGV 293 (373) T ss_dssp CHH-H---H-HHHHHTBCTTTCEEEECSC T ss_pred cHH-H---H-HHHHHhhccCCcEEEEEec Confidence 422 1 1 4567888998 88888864 |
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
---|
Probab=92.89 E-value=0.1 Score=51.75 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=32.7 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) ...++++.|+|+|.+|+.+|+.|+..|.+|+++++. T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~ 51 (155) T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKN 51 (155) T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECC Confidence 467899999999999999999999999999999874 |
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
---|
Probab=92.82 E-value=0.076 Score=61.33 Aligned_cols=67 Identities=12% Similarity=0.146 Sum_probs=50.0 Q ss_pred CCCeEEEEEcCh---hhHHHHHHHhhCC-CEEEE--EeCCCCchh--hhhcCCc----ccChHhhhcc-------CCEEE Q psy13054 955 KGATVGIVGLGN---IGLETAKLLKAFK-VSKIL--YTSRRVKEE--GTALGAQ----LVPLDTLCAE-------SDFIF 1015 (1128) Q Consensus 955 ~gktvGIIG~G~---IG~~vA~~l~afG-~~Vi~--~d~~~~~~~--~~~~g~~----~~~l~ell~~-------sDvV~ 1015 (1128) .-.+|||||+|. ||+..+..++..+ +++++ +|+...+.. ++..|+. +.++++++.. .|+|+ T Consensus 11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~ 90 (398) T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVS 90 (398) T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEE T ss_pred CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEE Confidence 345899999999 9999988887665 67764 565554443 4456763 3589999975 89999 Q ss_pred EecCCC Q psy13054 1016 VTCALT 1021 (1128) Q Consensus 1016 l~lPlt 1021 (1128) +++|.. T Consensus 91 i~tp~~ 96 (398) T 3dty_A 91 IATPNG 96 (398) T ss_dssp EESCGG T ss_pred ECCCcH Confidence 999954 |
>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans} | Back alignment and structure |
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Probab=92.79 E-value=0.17 Score=57.85 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=87.4 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHcc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSL 1035 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~ 1035 (1128) -.++-|+|.|.+|+++++.++.+|++|.++|++...... +-+..+|-++...| .+.++. T Consensus 199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~~-----------~~fp~a~~v~~~~p----------~~~~~~ 257 (362) T 3on5_A 199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCEK-----------HFFPDADEIIVDFP----------ADFLRK 257 (362) T ss_dssp CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGCG-----------GGCTTCSEEEESCH----------HHHHHH T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcccccc-----------ccCCCceEEecCCH----------HHHHhh Confidence 346999999999999999999999999999988653321 11234554443333 122333 Q ss_pred --CCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEe--------ccCCCCCCCCCccccCCCeEECC---CCCCCcHH Q psy13054 1036 --MKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLD--------VMIPEPLPADHPLVQLDNCVLTP---HTSSATKA 1102 (1128) Q Consensus 1036 --mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLD--------V~e~EPl~~~~pL~~~pNvilTP---Hiag~t~e 1102 (1128) +.+++++|=+.++.-.|...|..+|++ ..++.|+= ..+.+-. ..+ +-+| -+++-|.+ T Consensus 258 ~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~iGSr~R~~rl~~~g~~--------~~r-i~~PIGL~Iga~tP~ 327 (362) T 3on5_A 258 FLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGILGSKERTRRLLQNRKP--------PDH-LYSPVGLSIDAQGPE 327 (362) T ss_dssp SCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEESSCHHHHHHHHTSCCC--------CTT-EESSCSCCSCCCSHH T ss_pred cCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEEeCCHHHHHHHHhcCCc--------Hhh-eECCCCCCCCCCCHH Confidence 567888888889988999999888877 44454431 1111110 112 4555 58888876 Q ss_pred HHHHHHHHHHHHHHHHHcCCC Q psy13054 1103 VRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1103 ~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) . ++-.++.+|.+..+|++ T Consensus 328 E---IAvSI~AEiia~~~~~~ 345 (362) T 3on5_A 328 E---IAISIVAQLIQLIRSRK 345 (362) T ss_dssp H---HHHHHHHHHHHHHHHSC T ss_pred H---HHHHHHHHHHHHHhCCC Confidence 4 45666777777766653 |
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
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Probab=92.74 E-value=0.066 Score=56.77 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=44.0 Q ss_pred CeEEEEEcChhhHHHHHH--HhhCCCEEEEEeC-CCCchhhhhcCCc---ccChHhhhc-cCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKL--LKAFKVSKILYTS-RRVKEEGTALGAQ---LVPLDTLCA-ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~--l~afG~~Vi~~d~-~~~~~~~~~~g~~---~~~l~ell~-~sDvV~l~lPlt 1021 (1128) ++++|||+|++|+.+++. ... |++++++-+ .+.+......++. ..+++++++ +.|+|++++|.. T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~ 151 (211) T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPRE 151 (211) T ss_dssp EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHH T ss_pred CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCch Confidence 579999999999999995 345 888776543 3333221112322 347888886 589999999943 |
>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
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Probab=92.70 E-value=0.44 Score=55.78 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=72.2 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC---------Cchh----hhhcC-------CcccChHhhhc-cC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR---------VKEE----GTALG-------AQLVPLDTLCA-ES 1011 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~---------~~~~----~~~~g-------~~~~~l~ell~-~s 1011 (1128) ++.|++|.|.|+|++|+.+|+.|...|++|+.+.+.. +... ....+ .+..+.++++. .| T Consensus 232 ~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~~~ 311 (440) T 3aog_A 232 QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPV 311 (440) T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTCCC T ss_pred CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcCCC Confidence 4789999999999999999999999999999443331 1111 11111 23445567654 79 Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ||++-|... +.|+.+....++ -.+++--+-+.+- .+| .+.|.+..|..+ T Consensus 312 DIlvPcA~~-----n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI~~~ 360 (440) T 3aog_A 312 EFLVPAALE-----KQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGVLVV 360 (440) T ss_dssp SEEEECSSS-----SCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTCEEE T ss_pred cEEEecCCc-----CccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCCEEE Confidence 999987663 456666666663 5677788888863 443 456666666443 |
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
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Probab=92.70 E-value=0.083 Score=58.36 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=61.4 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-C------hHhhhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-P------LDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~------l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .|++|.|+|. |.||...++.++.+|++|++.+++..+.+ .++.|...+ + +.+.+...|+|+. +.. + + T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~-~- 200 (302) T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K-E- 200 (302) T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T-T- T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H-H- Confidence 4789999998 99999999999999999999987655544 455565431 2 2222356898888 664 2 1 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) -...++.|+++..+|.++- T Consensus 201 ---~~~~~~~l~~~G~~v~~g~ 219 (302) T 1iz0_A 201 ---VEESLGLLAHGGRLVYIGA 219 (302) T ss_dssp ---HHHHHTTEEEEEEEEEC-- T ss_pred ---HHHHHHhhccCCEEEEEeC Confidence 2466788888888888864 |
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
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Probab=92.67 E-value=0.19 Score=54.29 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=52.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEE-EeCCCCchhhhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCHHHHc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKIL-YTSRRVKEEGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~-~d~~~~~~~~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128) .+|+|+|+|+||+.+++.+...+-++++ +|+.... ..++.. .++++++ ++|+|+-..+ .+.+.. .+. T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~~-----~~~ 72 (243) T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----TTPYQQYQHIADVK-GADVAIDFSN-PNLLFP-----LLD 72 (243) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------CCSCBCSCTTTCT-TCSEEEECSC-HHHHHH-----HHT T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----cCCCceeCCHHHHh-CCCEEEEeCC-hHHHHH-----HHH Confidence 4799999999999999999877556665 4543331 245544 4788988 9999884443 222322 233 Q ss_pred cCCCCcEEEEcCCC Q psy13054 1035 LMKPTAILVNTSRG 1048 (1128) Q Consensus 1035 ~mk~ga~lIN~aRG 1048 (1128) ++.|.-+|....| T Consensus 73 -l~~g~~vVigTTG 85 (243) T 3qy9_A 73 -EDFHLPLVVATTG 85 (243) T ss_dssp -SCCCCCEEECCCS T ss_pred -HhcCCceEeCCCC Confidence 6677666655555 |
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
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Probab=92.63 E-value=0.08 Score=59.92 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=29.0 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEE-EcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKIL-YTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~-y~~~ 733 (1128) -+|||.|+||||+.++|++..+||++++ +||. T Consensus 8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~ 40 (346) T 3h9e_O 8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPF 40 (346) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTT T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCC Confidence 4899999999999999999999999988 6663 |
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
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Probab=92.62 E-value=0.23 Score=56.65 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=59.7 Q ss_pred CeEEEEE-cChhhHHHHHHHhhCC------CEEEEEeCCCCchh-hhh--------cCCcccCh-HhhhccCCEEEEecC Q psy13054 957 ATVGIVG-LGNIGLETAKLLKAFK------VSKILYTSRRVKEE-GTA--------LGAQLVPL-DTLCAESDFIFVTCA 1019 (1128) Q Consensus 957 ktvGIIG-~G~IG~~vA~~l~afG------~~Vi~~d~~~~~~~-~~~--------~g~~~~~l-~ell~~sDvV~l~lP 1019 (1128) .+|+|+| .|.+|+.+.++|...+ .+++.+.++..... ..+ ......++ .+.+..+|+|+.|+| T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~alg 89 (352) T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVFLALP 89 (352) T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEEECCT T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEEECCC Confidence 6899999 9999999999998765 46666654332111 110 11111122 234568999999999 Q ss_pred CCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHH Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEAL 1056 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL 1056 (1128) .. ...+....++.|+.+|+.|-..-.+..+. T Consensus 90 ~~------~s~~~~~~~~~G~~vIDlSa~~R~~~~~~ 120 (352) T 2nqt_A 90 HG------HSAVLAQQLSPETLIIDCGADFRLTDAAV 120 (352) T ss_dssp TS------CCHHHHHHSCTTSEEEECSSTTTCSCHHH T ss_pred Cc------chHHHHHHHhCCCEEEEECCCccCCcchh Confidence 65 24555555567899999876554444343 |
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
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Probab=92.59 E-value=0.15 Score=60.01 Aligned_cols=112 Identities=15% Similarity=0.148 Sum_probs=74.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc--h---hhhhcCCccc---ChHhhhcc-CCEEEEecCC--- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK--E---EGTALGAQLV---PLDTLCAE-SDFIFVTCAL--- 1020 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~--~---~~~~~g~~~~---~l~ell~~-sDvV~l~lPl--- 1020 (1128) ++.||+|.|||+|..|..+|+.|+..|.+|.++|.+... + ..++.|++.. ..++++.. +|+|++.--. T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~ 85 (451) T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN 85 (451) T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC Confidence 578999999999999999999999999999999986531 1 1344566543 34456676 8998875322 Q ss_pred Cccc-----c--cccCHH-HHcc-CCCCcEEEEcCCCcccCHHHHHHHHhcCC Q psy13054 1021 TKDT-----E--QLIGRK-QFSL-MKPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1021 t~~T-----~--~li~~~-~l~~-mk~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128) +|+. + .++++- .+.. ++...+-|-=+.|+.-...-+...|+... T Consensus 86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g 138 (451) T 3lk7_A 86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG 138 (451) T ss_dssp SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT T ss_pred ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC Confidence 2221 1 245443 3333 34444555557888777777777777543 |
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
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Probab=92.55 E-value=0.12 Score=58.61 Aligned_cols=65 Identities=14% Similarity=0.207 Sum_probs=45.8 Q ss_pred CeEEEEEcChhhH-HHHHHHhhC-CCEEEEEeCCCCchh-hhh---cCCc-ccChHhhhcc--CCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGL-ETAKLLKAF-KVSKILYTSRRVKEE-GTA---LGAQ-LVPLDTLCAE--SDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~-~vA~~l~af-G~~Vi~~d~~~~~~~-~~~---~g~~-~~~l~ell~~--sDvV~l~lPlt 1021 (1128) .+|||||+|.||+ ..+..++.. +++++++.++..... +.. .++. +.++++++.. .|+|++++|.. T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 76 (349) T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAH 76 (349) T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGG T ss_pred eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcH Confidence 3799999999999 577777665 788774443332222 233 3444 3589999986 89999999953 |
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
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Probab=92.54 E-value=0.19 Score=56.74 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=63.9 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-------C-hHhh---h-----ccCCEEEEe Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-------P-LDTL---C-----AESDFIFVT 1017 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-------~-l~el---l-----~~sDvV~l~ 1017 (1128) .|++|.|+|.|.||...++.++.+|++|++.+....+.+ .++.|+..+ + .+++ . ...|+|+.+ T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352) T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC Confidence 578999999999999999999999999888876555443 455565321 1 1222 2 258999988 Q ss_pred cCCCcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1018 CALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1018 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) ....+ + + ...++.++++..+|.++-+ T Consensus 248 ~g~~~-~---~-~~~~~~l~~~G~iv~~G~~ 273 (352) T 1e3j_A 248 SGNEK-C---I-TIGINITRTGGTLMLVGMG 273 (352) T ss_dssp SCCHH-H---H-HHHHHHSCTTCEEEECSCC T ss_pred CCCHH-H---H-HHHHHHHhcCCEEEEEecC Confidence 87422 1 1 3567888999999998754 |
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
---|
Probab=92.53 E-value=0.12 Score=59.59 Aligned_cols=90 Identities=21% Similarity=0.253 Sum_probs=63.1 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHhhh------ccCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDTLC------AESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell------~~sDvV~l~lPl 1020 (1128) .|.+|.|+|.|.+|...++.++.+|+ +|++.+....+.+ +++.|+..+ ++.+.+ ...|+|+-++.. T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404) T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC Confidence 58899999999999999999999999 8888876655544 556665432 232222 148999988875 Q ss_pred CcccccccCHHHHccC----CCCcEEEEcCCC Q psy13054 1021 TKDTEQLIGRKQFSLM----KPTAILVNTSRG 1048 (1128) Q Consensus 1021 t~~T~~li~~~~l~~m----k~ga~lIN~aRG 1048 (1128) ...+. ...++.+ +++..+|.++-. T Consensus 293 ~~~~~----~~~~~~l~~~~~~~G~iv~~G~~ 320 (404) T 3ip1_A 293 PQLVW----PQIEEVIWRARGINATVAIVARA 320 (404) T ss_dssp HHHHH----HHHHHHHHHCSCCCCEEEECSCC T ss_pred cHHHH----HHHHHHHHhccCCCcEEEEeCCC Confidence 42222 2233444 899999988743 |
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
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Probab=92.51 E-value=0.22 Score=56.74 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=63.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc--------ChHhhhc-----cCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV--------PLDTLCA-----ESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~--------~l~ell~-----~sDvV~l~lP 1019 (1128) .|++|.|+|.|.||...++.++.+|+ +|++.+....+.+ +++.|+..+ ++.+.+. ..|+|+-+.. T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376) T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274 (376) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC Confidence 57899999999999999999999999 7888876665544 556665421 2323222 4799988776 Q ss_pred CCcccccccCHHHHccCCCC-cEEEEcCC Q psy13054 1020 LTKDTEQLIGRKQFSLMKPT-AILVNTSR 1047 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~g-a~lIN~aR 1047 (1128) .. ++ + ...++.++++ ..+|.++- T Consensus 275 ~~-~~---~-~~~~~~l~~~~G~iv~~G~ 298 (376) T 1e3i_A 275 TA-QT---L-KAAVDCTVLGWGSCTVVGA 298 (376) T ss_dssp CH-HH---H-HHHHHTBCTTTCEEEECCC T ss_pred CH-HH---H-HHHHHHhhcCCCEEEEECC Confidence 32 21 1 3567788888 88888764 |
>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
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Probab=92.50 E-value=0.094 Score=60.63 Aligned_cols=92 Identities=15% Similarity=0.096 Sum_probs=63.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC--------CEEEEEeCCCCc--h---h-hh--hc------CC------cc-cChHhh Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK--------VSKILYTSRRVK--E---E-GT--AL------GA------QL-VPLDTL 1007 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG--------~~Vi~~d~~~~~--~---~-~~--~~------g~------~~-~~l~el 1007 (1128) .+|+|||.|.-|.++|..|..-| .+|..|.++.+. . + .. .. ++ .. .++++. T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a 114 (391) T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS 114 (391) T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH Confidence 37999999999999999996533 468888654321 0 0 00 00 11 11 278999 Q ss_pred hccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcc Q psy13054 1008 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1008 l~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) ++.||+|++.+| ....+.++. +.-..++++..+|+++-|=- T Consensus 115 l~~ad~ii~avP-s~~~r~~l~-~l~~~~~~~~~iv~~~KGie 155 (391) T 4fgw_A 115 VKDVDIIVFNIP-HQFLPRICS-QLKGHVDSHVRAISCLKGFE 155 (391) T ss_dssp HTTCSEEEECSC-GGGHHHHHH-HHTTTSCTTCEEEECCCSCE T ss_pred HhcCCEEEEECC-hhhhHHHHH-HhccccCCCceeEEeccccc Confidence 999999999999 445555543 34456788999999998843 |
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
---|
Probab=92.49 E-value=0.074 Score=60.47 Aligned_cols=33 Identities=36% Similarity=0.372 Sum_probs=30.7 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) ++|||||+|.||+.+|+.++..|.+|++||+.. T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~ 41 (341) T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR 41 (341) T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH Confidence 689999999999999999999999999999743 |
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
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Probab=92.45 E-value=0.16 Score=57.02 Aligned_cols=115 Identities=18% Similarity=0.221 Sum_probs=71.2 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC--Cchhh--hh---------cC--CcccChHhhhccCCEEEEe Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR--VKEEG--TA---------LG--AQLVPLDTLCAESDFIFVT 1017 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~--~~~~~--~~---------~g--~~~~~l~ell~~sDvV~l~ 1017 (1128) ...++|+|||.|.+|..+|..+...|. +|+.+|... .+... .+ .. +...+-.+.++.||+|+++ T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIia 85 (315) T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVIT 85 (315) T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEe Confidence 456899999999999999999988888 999998762 22211 10 11 1112235678999999998 Q ss_pred cCCCccccc-----cc--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEEE Q psy13054 1018 CALTKDTEQ-----LI--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGAG 1069 (1128) Q Consensus 1018 lPlt~~T~~-----li--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~gaa 1069 (1128) .+. +...+ ++ |. +.+....|++++|+++-.-=+....+.+. +...++.|.+ T Consensus 86 ag~-p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~~k~sg~p~~rviG~g 152 (315) T 3tl2_A 86 AGI-ARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSVFKEAGFPKERVIGQS 152 (315) T ss_dssp CSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC T ss_pred CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHHHHhcCCChHHEEeec Confidence 752 22111 12 11 22344468999999985443334444433 2234666663 |
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
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Probab=92.41 E-value=0.081 Score=59.13 Aligned_cols=116 Identities=13% Similarity=0.174 Sum_probs=68.4 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh-hh---hc---CCcc-cChHhhhccCCEEEEecCCCc--- Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE-GT---AL---GAQL-VPLDTLCAESDFIFVTCALTK--- 1022 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~-~~---~~---g~~~-~~l~ell~~sDvV~l~lPlt~--- 1022 (1128) .++|+|||.|.+|..+|..+..-|. +++.+|....... +. .. .++. .++ +.++.||+|+++..... T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~ 92 (303) T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ 92 (303) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC Confidence 3789999999999999999877677 9999997653111 11 11 1222 366 66899999999874311 Q ss_pred -------ccccccC--HHHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEE--EEec Q psy13054 1023 -------DTEQLIG--RKQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGA--GLDV 1072 (1128) Q Consensus 1023 -------~T~~li~--~~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~ga--aLDV 1072 (1128) ++..++. .+.+....|++++||++-..-+-...+.+. +...++.|. -||+ T Consensus 93 tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~gt~Ld~ 155 (303) T 2i6t_A 93 SYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDS 155 (303) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCCCCCchH Confidence 1111110 012333358999999988444334444333 223466665 3464 |
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
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Probab=92.30 E-value=0.17 Score=52.71 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=60.8 Q ss_pred CeEEEEE-cChhhHHHHHHHh-hCCCEEEEEeCCCC-chh-h--hhcCCcc--------cChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVG-LGNIGLETAKLLK-AFKVSKILYTSRRV-KEE-G--TALGAQL--------VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG-~G~IG~~vA~~l~-afG~~Vi~~d~~~~-~~~-~--~~~g~~~--------~~l~ell~~sDvV~l~lPlt~ 1022 (1128) |++.|.| .|.||+++++.|. .-|++|++.+++.. +.. . ...++.. .+++++++..|+|+.++... T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~- 84 (221) T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES- 84 (221) T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC- T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC- Confidence 6799999 5999999999999 89999999986644 222 1 1112211 24567889999999888743 Q ss_pred ccccccCHHHHccCCC-C-cEEEEcCCCccc Q psy13054 1023 DTEQLIGRKQFSLMKP-T-AILVNTSRGGLL 1051 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~-g-a~lIN~aRG~lV 1051 (1128) ... ....+..|+. + ..|||+|..... T Consensus 85 n~~---~~~~~~~~~~~~~~~iv~iSs~~~~ 112 (221) T 3r6d_A 85 GSD---MASIVKALSRXNIRRVIGVSMAGLS 112 (221) T ss_dssp HHH---HHHHHHHHHHTTCCEEEEEEETTTT T ss_pred Chh---HHHHHHHHHhcCCCeEEEEeeceec Confidence 111 3445555543 2 368888765543 |
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
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Probab=92.30 E-value=0.11 Score=59.77 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=34.1 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) -+.||||||||.|.+|+.+++.++.+|++++++|+.. T Consensus 11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~ 47 (389) T 3q2o_A 11 ILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTK 47 (389) T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESST T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCC Confidence 3689999999999999999999999999999998743 |
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
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Probab=92.22 E-value=0.072 Score=63.28 Aligned_cols=71 Identities=14% Similarity=0.200 Sum_probs=55.6 Q ss_pred cCHHHHhhc---CCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEecC Q psy13054 312 VPLDTLCAE---SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVM 383 (1128) Q Consensus 312 vsLdeLl~~---SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDVf 383 (1128) .+++|+++. +|+|++++|-...++..+ ++....+++|.++|+++.|...+...+.+.+.+..+...+.-|. T Consensus 57 ~~~~e~v~~l~~aDvVilaVp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~ 130 (478) T 1pgj_A 57 ETMEAFAASLKKPRKALILVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS 130 (478) T ss_dssp SCHHHHHHHBCSSCEEEECCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE T ss_pred CCHHHHHhcccCCCEEEEecCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeecc Confidence 389999875 999999999877777777 45556789999999999998778888999998754443333443 |
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
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Probab=92.21 E-value=0.16 Score=56.61 Aligned_cols=111 Identities=18% Similarity=0.150 Sum_probs=71.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hh---h----c--C--Cccc-ChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GT---A----L--G--AQLV-PLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~---~----~--g--~~~~-~l~ell~~sDvV~l~lPl 1020 (1128) .+|+|||.|.+|..+|..|...|. +|..||....+.+ .. . . . +... + .+.++.||+|+++.+. T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294) T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294) T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC Confidence 379999999999999999987777 8999997665432 10 1 1 1 1112 4 7899999999999763 Q ss_pred Ccccccc-----c--CH-------HHHccCCCCcEEEEcCCCcccCHHHHH--HH--HhcCCceEEE--Ee Q psy13054 1021 TKDTEQL-----I--GR-------KQFSLMKPTAILVNTSRGGLLDQEALV--EF--LKDKKIGGAG--LD 1071 (1128) Q Consensus 1021 t~~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~--~a--L~~g~i~gaa--LD 1071 (1128) . ...++ + |. +.+....|++++|+++- .+|.-..+ +. +...++.|.+ || T Consensus 80 ~-~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN--Pvd~~t~~~~k~~g~p~~rviG~gt~LD 147 (294) T 1oju_A 80 A-RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMTYIMWKESGKPRNEVFGMGNQLD 147 (294) T ss_dssp C-CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHHHHHHHHSCCCTTSEEECSHHHH T ss_pred C-CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC--cchHHHHHHHHhcCCCHHHEeecccccH Confidence 3 22222 1 11 23556689999999984 45543332 22 1234777774 66 |
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
---|
Probab=92.12 E-value=0.16 Score=49.22 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=70.2 Q ss_pred CCeEEEEEc----ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccccCH Q psy13054 956 GATVGIVGL----GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 956 gktvGIIG~----G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) -++|.|||. ++.|..+.+.|+..|.+|+-++|....- .|.+ +.++.++-. -|.+++++| .+.+..+++ T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i----~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v~- 76 (122) T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV----LGKTIINERPVIEG-VDTVTLYIN-PQNQLSEYN- 76 (122) T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE----TTEECBCSCCCCTT-CCEEEECSC-HHHHGGGHH- T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC----CCeeccCChHHCCC-CCEEEEEeC-HHHHHHHHH- Confidence 378999998 5689999999999999999888765432 2433 347778777 999999999 455666664 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) .+..+...+++++.+- .++++.+..++..|.- T Consensus 77 -e~~~~g~k~v~~~~G~----~~~e~~~~a~~~Girv 108 (122) T 3ff4_A 77 -YILSLKPKRVIFNPGT----ENEELEEILSENGIEP 108 (122) T ss_dssp -HHHHHCCSEEEECTTC----CCHHHHHHHHHTTCEE T ss_pred -HHHhcCCCEEEECCCC----ChHHHHHHHHHcCCeE Confidence 3334455577765542 3466777777665653 |
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
---|
Probab=92.12 E-value=0.34 Score=53.71 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=52.7 Q ss_pred cCCCeEEEEEc---ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCC Q psy13054 954 LKGATVGIVGL---GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 954 L~gktvGIIG~---G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) +.|++|++||= +++.+..+..+..||++|.+..|..-.+. ..+.|++. .+++|.++.+|||.. +-. T Consensus 144 l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~ 214 (291) T 3d6n_B 144 VKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRL 214 (291) T ss_dssp CTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCC T ss_pred cCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCc Confidence 78999999997 89999999999999999998876543322 23345553 489999999999998 654 |
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
---|
Probab=92.10 E-value=0.1 Score=60.34 Aligned_cols=69 Identities=17% Similarity=0.278 Sum_probs=47.4 Q ss_pred ccCCC-eEEEEEcChhhHHHHHHHhhC---------CCEEEEE-eCCCCchh--hhhcCCc--ccChHhhhc--cCCEEE Q psy13054 953 GLKGA-TVGIVGLGNIGLETAKLLKAF---------KVSKILY-TSRRVKEE--GTALGAQ--LVPLDTLCA--ESDFIF 1015 (1128) Q Consensus 953 ~L~gk-tvGIIG~G~IG~~vA~~l~af---------G~~Vi~~-d~~~~~~~--~~~~g~~--~~~l~ell~--~sDvV~ 1015 (1128) .+..| +|||||+|.||+.-++.++.. +++++++ |+...+.+ +++.+.. +.+++++++ +-|+|+ T Consensus 22 ~Ms~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~ 101 (412) T 4gqa_A 22 SMSARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVD 101 (412) T ss_dssp ---CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEE T ss_pred cccccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEE Confidence 34444 799999999999988887654 4566654 54444333 4556663 358999996 579999 Q ss_pred EecCCC Q psy13054 1016 VTCALT 1021 (1128) Q Consensus 1016 l~lPlt 1021 (1128) +++|.. T Consensus 102 I~tp~~ 107 (412) T 4gqa_A 102 ITSPNH 107 (412) T ss_dssp ECSCGG T ss_pred ECCCcH Confidence 999943 |
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
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Probab=92.10 E-value=0.15 Score=57.47 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=63.5 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-------cChHhhhc-----cCCEEEEecCC Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-------VPLDTLCA-----ESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-------~~l~ell~-----~sDvV~l~lPl 1020 (1128) .|++|.|+|. |.||+.+++.++..|++|++.++...+.+ ..+.|... .++.+.+. ..|+|+.+... T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347) T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347) T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc Confidence 5789999999 89999999999999999999886655443 44445421 13333333 47999887763 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) .+. -...+..|+++..+|+++.. T Consensus 249 ~~~-----~~~~~~~l~~~G~iv~~g~~ 271 (347) T 2hcy_A 249 EAA-----IEASTRYVRANGTTVLVGMP 271 (347) T ss_dssp HHH-----HHHHTTSEEEEEEEEECCCC T ss_pred HHH-----HHHHHHHHhcCCEEEEEeCC Confidence 222 14567788899999998754 |
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
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Probab=92.09 E-value=0.11 Score=61.75 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=49.4 Q ss_pred CCCeEEEEEc----ChhhHHHHHHHhhC--CCEEE-EEeCCCCchh--hhhcCCc----ccChHhhhc--cCCEEEEecC Q psy13054 955 KGATVGIVGL----GNIGLETAKLLKAF--KVSKI-LYTSRRVKEE--GTALGAQ----LVPLDTLCA--ESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~----G~IG~~vA~~l~af--G~~Vi-~~d~~~~~~~--~~~~g~~----~~~l~ell~--~sDvV~l~lP 1019 (1128) .-.+|||||+ |.||+..++.++.. +++++ ++|+...+.. ++..|+. +.+++++++ +.|+|++++| T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp 117 (479) T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 117 (479) T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC Confidence 3457999999 99999999999886 77876 4554443333 3445653 458999996 6899999999 Q ss_pred C Q psy13054 1020 L 1020 (1128) Q Consensus 1020 l 1020 (1128) . T Consensus 118 ~ 118 (479) T 2nvw_A 118 V 118 (479) T ss_dssp H T ss_pred c Confidence 4 |
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
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Probab=92.06 E-value=0.094 Score=59.28 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=69.8 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchhh--h--hcC--------Ccc-cChHhhhccCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEEG--T--ALG--------AQL-VPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~--~--~~g--------~~~-~~l~ell~~sDvV~l~lP 1019 (1128) ..++|+|||.|.||..+|..+...|+ +++.+|....+... . ..+ +.. .+.++ ++.||+|+++.. T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330) T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330) T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC Confidence 56899999999999999999987777 89999975543321 1 011 111 25655 899999999865 Q ss_pred CCccccc-----cc--CH-------HHHccCCCCcEEEEcCCCcccCHHHHHHHH--hcCCceEE Q psy13054 1020 LTKDTEQ-----LI--GR-------KQFSLMKPTAILVNTSRGGLLDQEALVEFL--KDKKIGGA 1068 (1128) Q Consensus 1020 lt~~T~~-----li--~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~aL--~~g~i~ga 1068 (1128) . +...+ ++ |. +.+....|++++++++-.-=+....+.+.. ...++.|. T Consensus 99 ~-p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~~k~sg~p~~rViG~ 162 (330) T 3ldh_A 99 A-RQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGS 162 (330) T ss_dssp C-CCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEECC T ss_pred C-CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHHHHHhCCCHHHeecc Confidence 3 22212 12 11 234555899999999864433333333331 22355554 |
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
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Probab=92.06 E-value=0.13 Score=54.35 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=63.0 Q ss_pred ccCCCeEEEEE-cChhhHHHHHHHhhCC-CEEEEEeCCCCchh-hhhcCCc--------ccChHhhhccCCEEEEecCCC Q psy13054 953 GLKGATVGIVG-LGNIGLETAKLLKAFK-VSKILYTSRRVKEE-GTALGAQ--------LVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 953 ~L~gktvGIIG-~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~-~~~~g~~--------~~~l~ell~~sDvV~l~lPlt 1021 (1128) .+..|+|.|.| .|.||+++++.|..-| .+|++++++..+.. ....++. ..+++++++..|+|+.+++.. T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~ 99 (236) T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGE 99 (236) T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCST T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCC Confidence 45568999999 5999999999999999 89999886654332 1111221 124667889999999887643 Q ss_pred cccccccCHHHHccCCC--CcEEEEcCCCcc Q psy13054 1022 KDTEQLIGRKQFSLMKP--TAILVNTSRGGL 1050 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~--ga~lIN~aRG~l 1050 (1128) ... ......+..|+. ...|||+|.... T Consensus 100 ~~~--~~~~~~~~~~~~~~~~~iV~iSS~~~ 128 (236) T 3qvo_A 100 DLD--IQANSVIAAMKACDVKRLIFVLSLGI 128 (236) T ss_dssp THH--HHHHHHHHHHHHTTCCEEEEECCCCC T ss_pred chh--HHHHHHHHHHHHcCCCEEEEEeccee Confidence 321 112345555533 247999987554 |
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
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Probab=92.00 E-value=0.24 Score=55.24 Aligned_cols=65 Identities=12% Similarity=0.130 Sum_probs=47.2 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhCCCEEEEE-eCCCCchhh-hhc-CCc-ccChHhhh----------ccCCEEEEecCCC Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAFKVSKILY-TSRRVKEEG-TAL-GAQ-LVPLDTLC----------AESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~afG~~Vi~~-d~~~~~~~~-~~~-g~~-~~~l~ell----------~~sDvV~l~lPlt 1021 (1128) .++||||+ |.||+..++.++..+.+++++ |++..+... ... +.. +.++++++ .+.|+|++++|.. T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~ 83 (312) T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH 83 (312) T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch Confidence 57999999 789999999999889887755 444433222 222 233 34788887 6799999999943 |
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
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Probab=91.99 E-value=0.099 Score=62.03 Aligned_cols=113 Identities=16% Similarity=0.227 Sum_probs=73.5 Q ss_pred CCeEEEEEcChh--hHHHHHHHh---hC-CCEEEEEeCCCCchhh-----h----hcC----Ccc-cChHhhhccCCEEE Q psy13054 956 GATVGIVGLGNI--GLETAKLLK---AF-KVSKILYTSRRVKEEG-----T----ALG----AQL-VPLDTLCAESDFIF 1015 (1128) Q Consensus 956 gktvGIIG~G~I--G~~vA~~l~---af-G~~Vi~~d~~~~~~~~-----~----~~g----~~~-~~l~ell~~sDvV~ 1015 (1128) ..+|+|||.|.+ |.++|..+. ++ |.+|+.||....+.+. . ..+ ++. .++++.++.||+|+ T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480) T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480) T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE Confidence 468999999997 566666553 44 8899999976643220 0 111 122 26778899999999 Q ss_pred EecCCC---------------------cccc-------ccc----C----H---HHHccCCCCcEEEEcCCCcccCHHHH Q psy13054 1016 VTCALT---------------------KDTE-------QLI----G----R---KQFSLMKPTAILVNTSRGGLLDQEAL 1056 (1128) Q Consensus 1016 l~lPlt---------------------~~T~-------~li----~----~---~~l~~mk~ga~lIN~aRG~lVde~aL 1056 (1128) +++|.. .+|. |++ + . +.+....|+|++||.+-.-=+-+.++ T Consensus 83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~ 162 (480) T 1obb_A 83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV 162 (480) T ss_dssp ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH T ss_pred ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH Confidence 999741 1110 111 0 0 33555679999999998877767777 Q ss_pred HHHHhcCCceEEE Q psy13054 1057 VEFLKDKKIGGAG 1069 (1128) Q Consensus 1057 ~~aL~~g~i~gaa 1069 (1128) .+ +...++.|.+ T Consensus 163 ~k-~p~~rviG~c 174 (480) T 1obb_A 163 TR-TVPIKAVGFC 174 (480) T ss_dssp HH-HSCSEEEEEC T ss_pred HH-CCCCcEEecC Confidence 66 5566666663 |
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
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Probab=91.97 E-value=0.069 Score=55.00 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=55.1 Q ss_pred CCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------Ch-Hhhh-----ccCCEEEEecCC Q psy13054 955 KGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PL-DTLC-----AESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l-~ell-----~~sDvV~l~lPl 1020 (1128) .|++|.|+| .|.||+.+++.++..|++|++.++...+.+ ..+.|...+ +. +++. ...|+|+.+.. T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g- 116 (198) T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA- 116 (198) T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC- T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc- Confidence 578999999 699999999999999999998886544332 333343211 11 1111 13567666553 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) . ++ -...+..|+++..+|+++.. T Consensus 117 ~-~~----~~~~~~~l~~~G~~v~~g~~ 139 (198) T 1pqw_A 117 G-EA----IQRGVQILAPGGRFIELGKK 139 (198) T ss_dssp T-HH----HHHHHHTEEEEEEEEECSCG T ss_pred h-HH----HHHHHHHhccCCEEEEEcCC Confidence 1 11 13456666777777776543 |
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
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Probab=91.95 E-value=0.25 Score=56.18 Aligned_cols=85 Identities=22% Similarity=0.217 Sum_probs=53.9 Q ss_pred CeEEEEE-cChhhHHHHHHHhhCC-CEEEEEeCCCCchh-hhh--------cCCcccChHhhhccCCEEEEecCCCcccc Q psy13054 957 ATVGIVG-LGNIGLETAKLLKAFK-VSKILYTSRRVKEE-GTA--------LGAQLVPLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 957 ktvGIIG-~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~-~~~--------~g~~~~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .+|||+| +|.||+.+.+.|.... ++++...++..... ..+ ......++++ +..+|+|+.|+|.... + T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~ 82 (345) T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A 82 (345) T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H Confidence 5799999 7999999999997654 57776665433211 110 1122234555 5789999999995532 2 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .+.. +.++.|+.+|..|- T Consensus 83 ~~a~----~~~~aG~~VId~Sa 100 (345) T 2ozp_A 83 REFD----RYSALAPVLVDLSA 100 (345) T ss_dssp HTHH----HHHTTCSEEEECSS T ss_pred HHHH----HHHHCCCEEEEcCc Confidence 2221 22366888888865 |
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
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Probab=91.89 E-value=0.12 Score=58.08 Aligned_cols=88 Identities=16% Similarity=0.214 Sum_probs=62.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------ChHhhhc----cCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PLDTLCA----ESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell~----~sDvV~l~lPlt~~ 1023 (1128) .|++|.|+|.|.||...++.++.+|++|++.+....+.+ .++.|+..+ ++.+.+. ..|+|+.+....+. T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~ 245 (340) T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA 245 (340) T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH Confidence 578999999999999999999999999999987665554 556665421 2333222 57888877653221 Q ss_pred cccccCHHHHccCCCCcEEEEcCC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) + ...+..++++..++.++- T Consensus 246 ----~-~~~~~~l~~~G~iv~~G~ 264 (340) T 3s2e_A 246 ----F-SQAIGMVRRGGTIALNGL 264 (340) T ss_dssp ----H-HHHHHHEEEEEEEEECSC T ss_pred ----H-HHHHHHhccCCEEEEeCC Confidence 1 345677888888888763 |
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
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Probab=91.87 E-value=0.12 Score=57.12 Aligned_cols=101 Identities=20% Similarity=0.229 Sum_probs=61.1 Q ss_pred CeEEEEEcChhhHHHHHHHhh----CCCEEEEEeCCCCchhhhhcCCcccChHhhhc--cCCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKA----FKVSKILYTSRRVKEEGTALGAQLVPLDTLCA--ESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~a----fG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~--~sDvV~l~lPlt~~T~~li~~ 1030 (1128) .+|||||+|.||+..++.+.. -++++++..++.. .....++.+.+++++++ +.|+|++++|.. ++. + T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~--~a~~~g~~~~~~~ell~~~~vD~V~i~tp~~--~H~---~ 80 (294) T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE--LGSLDEVRQISLEDALRSQEIDVAYICSESS--SHE---D 80 (294) T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC--CCEETTEEBCCHHHHHHCSSEEEEEECSCGG--GHH---H T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH--HHHHcCCCCCCHHHHhcCCCCCEEEEeCCcH--hHH---H Confidence 479999999999999988865 3677765444322 12234555678999997 689999999943 221 1 Q ss_pred HHHccCCCCc-EEEEc-CCCcccCHHHHHHHHhcCC Q psy13054 1031 KQFSLMKPTA-ILVNT-SRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1031 ~~l~~mk~ga-~lIN~-aRG~lVde~aL~~aL~~g~ 1064 (1128) -..+.++.|. +++.- ---.+-+-++|.++.++.. T Consensus 81 ~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g 116 (294) T 1lc0_A 81 YIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKG 116 (294) T ss_dssp HHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTT T ss_pred HHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhC Confidence 2223344444 55552 1112233456666654433 |
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
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Probab=91.85 E-value=0.11 Score=53.01 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=33.5 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhC-CCeEEEEcCC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAF-KVSKILYTSR 733 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~af-g~~vi~y~~~ 733 (1128) .++.+++++|+|+|++|+.+|+.|+.. |.+|+++|+. T Consensus 35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~ 72 (183) T 3c85_A 35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIR 72 (183) T ss_dssp BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESC T ss_pred cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECC Confidence 357788999999999999999999998 9999999874 |
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
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Probab=91.85 E-value=0.16 Score=59.30 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=47.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh--hhc--CCccc---ChHhhhccCCEEEE Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG--TAL--GAQLV---PLDTLCAESDFIFV 1016 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~--~~~--g~~~~---~l~ell~~sDvV~l 1016 (1128) -+.|++|+|+|-|.+|+.+++.++.+|.+|+++|+....+.. .+. -..+. .+.++++++|+|+. T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~ 102 (419) T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST 102 (419) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE Confidence 468999999999999999999999999999999876654431 111 11112 35566778999884 |
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
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Probab=91.83 E-value=0.46 Score=55.62 Aligned_cols=88 Identities=14% Similarity=0.272 Sum_probs=66.9 Q ss_pred ccCCCeEEEEEcCh----------hhHHHHHHHhhC-CCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCC Q psy13054 953 GLKGATVGIVGLGN----------IGLETAKLLKAF-KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 953 ~L~gktvGIIG~G~----------IG~~vA~~l~af-G~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt 1021 (1128) .+.|++|+|+|+.- -...+++.|... |++|.+|||..... ....++++.++.+|+|+++.+-. T Consensus 312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------~~~~~~~~~~~~ad~vvi~t~~~ 385 (431) T 3ojo_A 312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------FVEHDMSHAVKDASLVLILSDHS 385 (431) T ss_dssp HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------TBCSTTHHHHTTCSEEEECSCCG T ss_pred hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------cccCCHHHHHhCCCEEEEecCCH Confidence 47899999999852 368999999999 99999999987642 22357899999999999988844 Q ss_pred cccccccCHHHHccCCCCcEEEEcCCCcc Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) +-+. ++.+.++.|+ +.+++++ |+-+ T Consensus 386 -~f~~-~d~~~~~~~~-~~~i~D~-r~~~ 410 (431) T 3ojo_A 386 -EFKN-LSDSHFDKMK-HKVIFDT-KNVV 410 (431) T ss_dssp -GGTS-CCGGGGTTCS-SCEEEES-SCCC T ss_pred -HHhc-cCHHHHHhCC-CCEEEEC-CCCC Confidence 3333 3555667787 6788885 5544 |
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
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Probab=91.81 E-value=0.11 Score=60.53 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=48.2 Q ss_pred CCeEEEEEcCh---hhHHHHHHHhhCC-CEEE--EEeCCCCchh--hhhcCCc----ccChHhhhcc-------CCEEEE Q psy13054 956 GATVGIVGLGN---IGLETAKLLKAFK-VSKI--LYTSRRVKEE--GTALGAQ----LVPLDTLCAE-------SDFIFV 1016 (1128) Q Consensus 956 gktvGIIG~G~---IG~~vA~~l~afG-~~Vi--~~d~~~~~~~--~~~~g~~----~~~l~ell~~-------sDvV~l 1016 (1128) -.+|||||+|. ||+..+..++..+ ++++ ++|+...+.. ++..|+. +.++++++.. .|+|++ T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I 116 (417) T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI 116 (417) T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE Confidence 35799999999 9999888887665 6766 3465544433 4456763 3589999976 899999 Q ss_pred ecCCC Q psy13054 1017 TCALT 1021 (1128) Q Consensus 1017 ~lPlt 1021 (1128) +.|.. T Consensus 117 ~tp~~ 121 (417) T 3v5n_A 117 VTPNH 121 (417) T ss_dssp CSCTT T ss_pred CCCcH Confidence 99954 |
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
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Probab=91.79 E-value=0.093 Score=50.44 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=30.8 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +.++++.|+|+|.+|+.+++.+...|.+|+++++. T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144) T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144) T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC Confidence 56789999999999999999999999999999863 |
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
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Probab=91.75 E-value=0.31 Score=54.70 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=72.6 Q ss_pred CCCeEEEEEcChhhHH-HHHHHhhCCCEEEEEeCCCCchh---hhhcCCccc---ChHhhh-ccCCEEEEe--cC-CCcc Q psy13054 955 KGATVGIVGLGNIGLE-TAKLLKAFKVSKILYTSRRVKEE---GTALGAQLV---PLDTLC-AESDFIFVT--CA-LTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~-vA~~l~afG~~Vi~~d~~~~~~~---~~~~g~~~~---~l~ell-~~sDvV~l~--lP-lt~~ 1023 (1128) ..|+|.|||.|.+|.. +|+.|+..|++|.++|.+...+. .++.|+... +.+++. .++|+|+.. +| .+|+ T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~ 82 (326) T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDV 82 (326) T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHH T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHH Confidence 4578999999999995 99999999999999998754321 345566543 445565 579999975 23 2232 Q ss_pred c-----c--cccCH-HHHcc--CCC-CcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1024 T-----E--QLIGR-KQFSL--MKP-TAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1024 T-----~--~li~~-~~l~~--mk~-ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) - + .++++ +.|.. +++ ..+-|-=+.|+.-...-+...|+.. T Consensus 83 ~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~ 133 (326) T 3eag_A 83 VEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA 133 (326) T ss_dssp HHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT T ss_pred HHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc Confidence 1 1 23443 33443 332 3455666888887777777778764 |
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
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Probab=91.70 E-value=0.25 Score=56.41 Aligned_cols=88 Identities=22% Similarity=0.270 Sum_probs=62.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc--------ChHhhhc-----cCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV--------PLDTLCA-----ESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~--------~l~ell~-----~sDvV~l~lP 1019 (1128) .|.+|.|+|.|.||...++.++.+|+ +|++.+....+.+ +++.|+..+ ++.+.++ ..|+|+-+.. T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g 272 (378) T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG 272 (378) T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC Confidence 58899999999999999999999999 7988886766655 566665431 2223222 3788888776 Q ss_pred CCcccccccCHHHHccCCCC-cEEEEcCC Q psy13054 1020 LTKDTEQLIGRKQFSLMKPT-AILVNTSR 1047 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~g-a~lIN~aR 1047 (1128) .. ++ + ...++.++++ ..++.++- T Consensus 273 ~~-~~---~-~~~~~~l~~g~G~iv~~G~ 296 (378) T 3uko_A 273 NV-SV---M-RAALECCHKGWGTSVIVGV 296 (378) T ss_dssp CH-HH---H-HHHHHTBCTTTCEEEECSC T ss_pred CH-HH---H-HHHHHHhhccCCEEEEEcc Confidence 32 21 1 3567778885 78877763 |
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
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Probab=91.70 E-value=0.21 Score=55.40 Aligned_cols=106 Identities=17% Similarity=0.110 Sum_probs=67.5 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEE-EEeCCCCchhhhhcCCcc-cChHhhhc--cCCEEEEecCCCcccccccC Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKI-LYTSRRVKEEGTALGAQL-VPLDTLCA--ESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi-~~d~~~~~~~~~~~g~~~-~~l~ell~--~sDvV~l~lPlt~~T~~li~ 1029 (1128) ..++|.|+|+ |++|+.+++.++..|++++ .++|..... ...|+.. .+++++.. ..|++++++|. +.+...+. T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~~ 82 (288) T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM--EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAAL 82 (288) T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHHH T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc--eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHHH Confidence 3468999999 9999999999998899854 445443111 1235554 37999988 89999999993 34444443 Q ss_pred HHHHccCCCCcEEEEcCCCc-ccCHHHHHHHHhcCCce Q psy13054 1030 RKQFSLMKPTAILVNTSRGG-LLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~-lVde~aL~~aL~~g~i~ 1066 (1128) + ..+ .+-.+ +|..+-|- .-+++.|.++.++..+. T Consensus 83 e-a~~-~Gi~~-vVi~t~G~~~~~~~~l~~~a~~~gi~ 117 (288) T 1oi7_A 83 E-AAH-AGIPL-IVLITEGIPTLDMVRAVEEIKALGSR 117 (288) T ss_dssp H-HHH-TTCSE-EEECCSCCCHHHHHHHHHHHHHHTCE T ss_pred H-HHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHcCCE Confidence 2 222 22222 44444442 23456788888776553 |
>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A* | Back alignment and structure |
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Probab=91.62 E-value=2.7 Score=47.92 Aligned_cols=94 Identities=11% Similarity=0.130 Sum_probs=64.9 Q ss_pred ccCCCeEEEEEcC--hhhHHHHHHHhhCCCEEEEEeCCCCch--h--------hhhcCCcc---cChHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVGLG--NIGLETAKLLKAFKVSKILYTSRRVKE--E--------GTALGAQL---VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~G--~IG~~vA~~l~afG~~Vi~~d~~~~~~--~--------~~~~g~~~---~~l~ell~~sDvV~l~ 1017 (1128) .+.|++|++||=+ ++.+..+..+..||++|.++.|..-.+ + +...|... .+++|.++.+|||..- T Consensus 178 ~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~ 257 (358) T 4h31_A 178 ALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTD 257 (358) T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC T ss_pred CcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEE Confidence 4789999999954 799999999999999999887643221 1 12234332 3899999999999842 Q ss_pred cC----CCccc---------ccccCHHHHccC-CCCcEEEEcC Q psy13054 1018 CA----LTKDT---------EQLIGRKQFSLM-KPTAILVNTS 1046 (1128) Q Consensus 1018 lP----lt~~T---------~~li~~~~l~~m-k~ga~lIN~a 1046 (1128) .= ..++. ..-++.+.++++ ||+++|.-+. T Consensus 258 ~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L 300 (358) T 4h31_A 258 VWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL 300 (358) T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS T ss_pred EEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC Confidence 21 11111 134688888764 7888887653 |
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
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Probab=91.59 E-value=0.17 Score=56.97 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=68.0 Q ss_pred cCCCeEEEEEcChhhH-HHHHHHhhC-CCEEEEEeCCCCchhhhhcCCc-ccChHhhhcc---CCEEEEecCCCcc---- Q psy13054 954 LKGATVGIVGLGNIGL-ETAKLLKAF-KVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAE---SDFIFVTCALTKD---- 1023 (1128) Q Consensus 954 L~gktvGIIG~G~IG~-~vA~~l~af-G~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~---sDvV~l~lPlt~~---- 1023 (1128) +.-.+|||||+|.||+ ..++.++.. +++++++.++.... .++. +.++++++.. .|+|++++|.... T Consensus 23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~----~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~ 98 (330) T 4ew6_A 23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV----EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAA 98 (330) T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC----TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHH T ss_pred CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh----cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHH Confidence 3446899999999999 788888776 77877654443321 3444 4589999876 8999999993221 Q ss_pred ------ccccc-------CHHHHccC------CCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1024 ------TEQLI-------GRKQFSLM------KPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1024 ------T~~li-------~~~~l~~m------k~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) -+|++ +.+....| +.-.+.++.-+--.=....+.+.+++|.|.-. T Consensus 99 ~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~v 162 (330) T 4ew6_A 99 YKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSRYAPAVEAAKAFLASTTIKSV 162 (330) T ss_dssp HHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSTTHHHHHHHHHSSCEEEE T ss_pred HHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEehhhccHHHHHHHHHHhcCCceEE Confidence 12222 11111111 11234555544444456677777888887554 |
>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
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Probab=91.52 E-value=0.33 Score=56.59 Aligned_cols=107 Identities=18% Similarity=0.204 Sum_probs=64.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC-------------c-hh---h-hhcC-------CcccChHhh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV-------------K-EE---G-TALG-------AQLVPLDTL 1007 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~-------------~-~~---~-~~~g-------~~~~~l~el 1007 (1128) ++.|++|.|.|+|++|+.+|+.|..+|++|+.+.+... + .. . ...+ .+.++.+++ T Consensus 209 ~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~~~ 288 (421) T 2yfq_A 209 KMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEF 288 (421) T ss_dssp CGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC--------------- T ss_pred CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCccch Confidence 47899999999999999999999999999985443331 0 10 1 1111 233334454 Q ss_pred hc-cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1008 CA-ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1008 l~-~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +. .|||++-|.+ .+.|+.+.-..+ ...+++-.+-+.+- .+ -.+.|++..|.. T Consensus 289 ~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t-~e-a~~il~~~GI~~ 341 (421) T 2yfq_A 289 WTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT-PE-GDKVLTERGINL 341 (421) T ss_dssp ------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC-HH-HHHHHHHHTCEE T ss_pred hcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC-HH-HHHHHHHCCCEE Confidence 43 6899887754 356888888888 46778888888864 33 345566655543 |
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
---|
Probab=91.45 E-value=0.12 Score=58.23 Aligned_cols=86 Identities=19% Similarity=0.233 Sum_probs=59.6 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----ChHhh----hc--cCCEEEEecCCC Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----PLDTL----CA--ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~l~el----l~--~sDvV~l~lPlt 1021 (1128) .|++|.|+|. |.||...++.++.+|++|++.+++..+.+ .++.|...+ ++.+. .. ..|+|+.+.... T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~ 238 (342) T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP 238 (342) T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC-- T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh Confidence 5889999998 99999999999999999999987665544 445554321 22221 11 378888776632 Q ss_pred cccccccCHHHHccCCCCcEEEEcC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .-...+..++++..+|.++ T Consensus 239 ------~~~~~~~~l~~~G~iv~~G 257 (342) T 4eye_A 239 ------AFDDAVRTLASEGRLLVVG 257 (342) T ss_dssp ------CHHHHHHTEEEEEEEEEC- T ss_pred ------HHHHHHHhhcCCCEEEEEE Confidence 1245677778888888776 |
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
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Probab=91.42 E-value=1.1 Score=52.20 Aligned_cols=108 Identities=22% Similarity=0.246 Sum_probs=73.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhh-CCCEEEEEeCCC--------Cchh----hh-hcC-------CcccChHhhh-cc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKA-FKVSKILYTSRR--------VKEE----GT-ALG-------AQLVPLDTLC-AE 1010 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~~~--------~~~~----~~-~~g-------~~~~~l~ell-~~ 1010 (1128) ++.|++|.|.|+|++|+.+|+.|.. .|++|+...+.. -... .+ ..+ .+..+.++++ .. T Consensus 206 ~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil~~~ 285 (415) T 2tmg_A 206 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELD 285 (415) T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHTTCS T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhhcCC Confidence 4889999999999999999999998 999999443331 1111 11 111 2334556765 47 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ||+++-|... +.|+.+....++ -.+++--+-+.+ ..+| .+.|.+..+..+ T Consensus 286 ~DIliP~A~~-----n~i~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~~~ 335 (415) T 2tmg_A 286 VDILVPAALE-----GAIHAGNAERIK-AKAVVEGANGPT-TPEA-DEILSRRGILVV 335 (415) T ss_dssp CSEEEECSST-----TSBCHHHHTTCC-CSEEECCSSSCB-CHHH-HHHHHHTTCEEE T ss_pred CcEEEecCCc-----CccCcccHHHcC-CeEEEeCCCccc-CHHH-HHHHHHCCCEEE Confidence 9999988763 356777777773 567777788876 4443 355666666443 |
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
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Probab=91.42 E-value=0.27 Score=54.97 Aligned_cols=65 Identities=8% Similarity=0.098 Sum_probs=46.8 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCC-CCchh-hhhc-CCc-ccChHhhh-----------ccCCEEEEecCC Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAFKVSKILYTSR-RVKEE-GTAL-GAQ-LVPLDTLC-----------AESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~-~~~~~-~~~~-g~~-~~~l~ell-----------~~sDvV~l~lPl 1020 (1128) .++||||+ |.||+..++.++..+.+++++.++ ..+.. .... +.. +.++++++ .+.|+|+++.|. T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~ 83 (318) T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN 83 (318) T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc Confidence 57999999 789999999999889887765444 33322 2222 233 34788887 568999999994 Q ss_pred C Q psy13054 1021 T 1021 (1128) Q Consensus 1021 t 1021 (1128) . T Consensus 84 ~ 84 (318) T 3oa2_A 84 Y 84 (318) T ss_dssp G T ss_pred H Confidence 3 |
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
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Probab=91.38 E-value=0.18 Score=56.97 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=47.7 Q ss_pred CeEEEEEcC-hhhHHHHHHHhhC--CCEEEE-EeCCCCchh--hhhcCC-c-ccChHhhhc--cCCEEEEecCCC Q psy13054 957 ATVGIVGLG-NIGLETAKLLKAF--KVSKIL-YTSRRVKEE--GTALGA-Q-LVPLDTLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G-~IG~~vA~~l~af--G~~Vi~-~d~~~~~~~--~~~~g~-~-~~~l~ell~--~sDvV~l~lPlt 1021 (1128) .+|||||+| .+|+..++.++.. ++++++ +|+...+.. ++..+. . +.++++++. +.|+|++++|.. T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 93 (340) T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE 93 (340) T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch Confidence 479999999 8999999999876 577754 554443333 344555 3 458999986 589999999943 |
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
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Probab=91.28 E-value=0.14 Score=58.09 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=44.4 Q ss_pred eEEEEEcChhhHHHHHHHhh-CCCEEEEEeCCCCchh---hhhc------------------CCcc-cChHhhhccCCEE Q psy13054 958 TVGIVGLGNIGLETAKLLKA-FKVSKILYTSRRVKEE---GTAL------------------GAQL-VPLDTLCAESDFI 1014 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~~~~~~~---~~~~------------------g~~~-~~l~ell~~sDvV 1014 (1128) +|||+|+|.||+.+++.|.. -++++++.++...... +... +... .+.++++..+|+| T Consensus 3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV 82 (337) T 1cf2_P 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV 82 (337) T ss_dssp EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE T ss_pred EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE Confidence 79999999999999999876 5788877655432211 1111 1111 1466778899999 Q ss_pred EEecCCC Q psy13054 1015 FVTCALT 1021 (1128) Q Consensus 1015 ~l~lPlt 1021 (1128) +.|+|.. T Consensus 83 ~~atp~~ 89 (337) T 1cf2_P 83 IDCTPEG 89 (337) T ss_dssp EECCSTT T ss_pred EECCCch Confidence 9999954 |
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
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Probab=91.27 E-value=0.19 Score=54.44 Aligned_cols=66 Identities=17% Similarity=0.068 Sum_probs=47.9 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--ChHhh-hccCCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--PLDTL-CAESDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--~l~el-l~~sDvV~l~lPlt 1021 (1128) .++|.|.|.|.||+.+++.|..-|.+|++.+++..+.. ....+++.+ ++.++ +..+|+|+.+.... T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~ 74 (286) T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPD 74 (286) T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCB T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCcc Confidence 37899999999999999999999999999987655433 222333322 22221 78899999877654 |
>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
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Probab=91.26 E-value=0.48 Score=55.15 Aligned_cols=108 Identities=25% Similarity=0.331 Sum_probs=70.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC---------Cchhh----hhcCC------------ccc-ChHh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR---------VKEEG----TALGA------------QLV-PLDT 1006 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~---------~~~~~----~~~g~------------~~~-~l~e 1006 (1128) ++.|++|.|.|+|++|+.+|+.|..+|++|+...+.. +.... ...+. +.. +-++ T Consensus 207 ~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~ 286 (421) T 1v9l_A 207 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA 286 (421) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchh Confidence 4889999999999999999999999999999443331 11111 11111 223 4455 Q ss_pred hhc-cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1007 LCA-ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1007 ll~-~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ++. .||+++-|.- .+.|+.+....++ =.+++--+-+.+ ..+| .+.|.+..|..+ T Consensus 287 ~~~~~~Dil~P~A~-----~~~I~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~~~ 341 (421) T 1v9l_A 287 IFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVVVV 341 (421) T ss_dssp GGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCEEE T ss_pred hhcCCccEEEecCc-----CCccchhhHHHcC-ceEEEecCCCcC-CHHH-HHHHHHCCCEEe Confidence 554 6999987763 3456666666664 357777777775 4444 466777766554 |
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
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Probab=91.23 E-value=0.13 Score=58.49 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=45.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhC--------CCEEEE-EeCCCCchh--hhhcCCc--ccChHhhhcc--CCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF--------KVSKIL-YTSRRVKEE--GTALGAQ--LVPLDTLCAE--SDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af--------G~~Vi~-~d~~~~~~~--~~~~g~~--~~~l~ell~~--sDvV~l~lPlt 1021 (1128) -+|||||+|.||+.-++.++.. ++++++ +|++..+.. ++.+++. +.+++++++. -|+|++++|.. T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~ 86 (390) T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD 86 (390) T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH Confidence 4799999999999877766543 345554 454443333 4456653 3589999964 79999999943 |
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
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Probab=91.22 E-value=0.15 Score=59.64 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=49.3 Q ss_pred CCeEEEEEc----ChhhHHHHHHHhhC--CCEEE-EEeCCCCchh--hhhcCCc----ccChHhhhc--cCCEEEEecCC Q psy13054 956 GATVGIVGL----GNIGLETAKLLKAF--KVSKI-LYTSRRVKEE--GTALGAQ----LVPLDTLCA--ESDFIFVTCAL 1020 (1128) Q Consensus 956 gktvGIIG~----G~IG~~vA~~l~af--G~~Vi-~~d~~~~~~~--~~~~g~~----~~~l~ell~--~sDvV~l~lPl 1020 (1128) -.+|||||+ |.||+..++.++.. +++++ ++|+...+.. ++..++. +.++++++. +.|+|++++|. T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 99 (438) T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQV 99 (438) T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCH T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCc Confidence 357999999 99999999999887 78875 4554443332 3445653 458999996 68999999994 Q ss_pred C Q psy13054 1021 T 1021 (1128) Q Consensus 1021 t 1021 (1128) . T Consensus 100 ~ 100 (438) T 3btv_A 100 A 100 (438) T ss_dssp H T ss_pred H Confidence 3 |
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
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Probab=91.19 E-value=0.27 Score=56.00 Aligned_cols=65 Identities=8% Similarity=0.090 Sum_probs=47.0 Q ss_pred CCeEEEEEcChhhH-HHHHHHhhCCCEEEEE-eCCCCchh--hhhcCC-c-ccChHhhhcc--CCEEEEecCC Q psy13054 956 GATVGIVGLGNIGL-ETAKLLKAFKVSKILY-TSRRVKEE--GTALGA-Q-LVPLDTLCAE--SDFIFVTCAL 1020 (1128) Q Consensus 956 gktvGIIG~G~IG~-~vA~~l~afG~~Vi~~-d~~~~~~~--~~~~g~-~-~~~l~ell~~--sDvV~l~lPl 1020 (1128) -.+|||||+|.+|. ..+..++.-+++++++ |+...+.. ++..+. . +.++++++.. .|+|+++.|. T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~ 98 (361) T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVS 98 (361) T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCH T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh Confidence 45899999999995 5777777788987755 44333333 344553 2 4589999976 8999999994 |
>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
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Probab=91.18 E-value=0.58 Score=54.48 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=74.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC--------ch-h---h-hhcC------CcccChHhhh-ccCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV--------KE-E---G-TALG------AQLVPLDTLC-AESD 1012 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~--------~~-~---~-~~~g------~~~~~l~ell-~~sD 1012 (1128) ++.|+||.|-|+|++|+..|+.|..+|++|+.+.+... +. . . .+.+ .+.++-++++ ..|| T Consensus 218 ~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~~D 297 (424) T 3k92_A 218 KLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKDCD 297 (424) T ss_dssp CGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSCCS T ss_pred CcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecccc Confidence 48899999999999999999999999999875433331 11 1 1 1112 3445556654 4699 Q ss_pred EEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1013 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) |++=|... +.|+.+....++ -.+++--+-+.+ .. +-.+.|.+..|..+ T Consensus 298 IliPcA~~-----n~I~~~~a~~l~-ak~V~EgAN~p~-t~-eA~~iL~~rGI~~~ 345 (424) T 3k92_A 298 ILVPAAIS-----NQITAKNAHNIQ-ASIVVERANGPT-TI-DATKILNERGVLLV 345 (424) T ss_dssp EEEECSCS-----SCBCTTTGGGCC-CSEEECCSSSCB-CH-HHHHHHHHTTCEEE T ss_pred EEeecCcc-----cccChhhHhhcC-ceEEEcCCCCCC-CH-HHHHHHHHCCCEEE Confidence 99866553 567777777773 667788888885 43 34577777777554 |
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
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Probab=91.13 E-value=0.15 Score=57.95 Aligned_cols=87 Identities=22% Similarity=0.216 Sum_probs=58.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------ChHh----hhc--cCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PLDT----LCA--ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l~e----ll~--~sDvV~l~lPlt 1021 (1128) .|++|.|+|.|.||...++.++.+|++|++.+....+.+ +++.|+..+ ++.+ +.. ..|+|+-++. . T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~ 267 (363) T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G 267 (363) T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h Confidence 588999999999999999999999999999886655444 455555321 2222 111 4677777665 2 Q ss_pred cccccccCHHHHccCCCCcEEEEcCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) ++ -...++.++++..+|.++- T Consensus 268 -~~----~~~~~~~l~~~G~iv~~G~ 288 (363) T 3uog_A 268 -AG----LGQSLKAVAPDGRISVIGV 288 (363) T ss_dssp -SC----HHHHHHHEEEEEEEEEECC T ss_pred -HH----HHHHHHHhhcCCEEEEEec Confidence 11 1345666777777776653 |
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
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Probab=91.12 E-value=0.26 Score=55.14 Aligned_cols=108 Identities=14% Similarity=0.086 Sum_probs=70.6 Q ss_pred ccCCCeEEEE-Ec-ChhhHHHHHHHhhCCCEEE-EEeCCCCchhhhhcCCccc-ChHhhhc--cCCEEEEecCCCccccc Q psy13054 953 GLKGATVGIV-GL-GNIGLETAKLLKAFKVSKI-LYTSRRVKEEGTALGAQLV-PLDTLCA--ESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 953 ~L~gktvGII-G~-G~IG~~vA~~l~afG~~Vi-~~d~~~~~~~~~~~g~~~~-~l~ell~--~sDvV~l~lPlt~~T~~ 1026 (1128) -+..+++.|| |+ |+.|+.+++.++..|++++ .+||..... .-.|+... +++|+.+ ..|++++++|. +.... T Consensus 10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~ 86 (305) T 2fp4_A 10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK--THLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAA 86 (305) T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHH T ss_pred HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcc--eECCeeeechHHHhhhcCCCCEEEEecCH-HHHHH Confidence 3567889999 99 9999999999999999844 344432111 12455544 7999998 89999999994 33333 Q ss_pred ccCHHHHccCCCCcEEEEcCCCcc-cCHHHHHHHHhcC-Cce Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGL-LDQEALVEFLKDK-KIG 1066 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~l-Vde~aL~~aL~~g-~i~ 1066 (1128) .+.+ ..+ ..- ..+|+.+-|-. -|+..+.+..++. .+. T Consensus 87 ~~~e-~i~-~Gi-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~ 125 (305) T 2fp4_A 87 AINE-AID-AEV-PLVVCITEGIPQQDMVRVKHRLLRQGKTR 125 (305) T ss_dssp HHHH-HHH-TTC-SEEEECCCCCCHHHHHHHHHHHTTCSSCE T ss_pred HHHH-HHH-CCC-CEEEEECCCCChHHHHHHHHHHHhcCCcE Confidence 4432 222 222 23456666643 2344788888876 553 |
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
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Probab=91.12 E-value=0.14 Score=58.59 Aligned_cols=88 Identities=26% Similarity=0.334 Sum_probs=62.4 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHhhhc--------cCCEEEEec Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDTLCA--------ESDFIFVTC 1018 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell~--------~sDvV~l~l 1018 (1128) .|++|.|+|.|.+|...++.++.+|+ +|++.+....+.+ +++.|+..+ ++.+.+. ..|+|+-+. T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~ 261 (370) T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA 261 (370) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC Confidence 57899999999999999999999999 8888876555444 556665431 3434333 378888876 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCC Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) ... ++ + ...++.++++..+|.++- T Consensus 262 G~~-~~---~-~~~~~~l~~~G~vv~~G~ 285 (370) T 4ej6_A 262 GVA-ET---V-KQSTRLAKAGGTVVILGV 285 (370) T ss_dssp CCH-HH---H-HHHHHHEEEEEEEEECSC T ss_pred CCH-HH---H-HHHHHHhccCCEEEEEec Confidence 532 21 1 356677888888888764 |
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
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Probab=91.10 E-value=0.36 Score=50.02 Aligned_cols=91 Identities=10% Similarity=0.073 Sum_probs=59.6 Q ss_pred eEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--ChH----hhhccCCEEEEecCCC--cccc-- Q psy13054 958 TVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--PLD----TLCAESDFIFVTCALT--KDTE-- 1025 (1128) Q Consensus 958 tvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--~l~----ell~~sDvV~l~lPlt--~~T~-- 1025 (1128) +|.|.|. |.||+.+++.|..-|.+|++.+++..+.. ....+++.+ ++. +.+...|+|+.++... +... T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~ 81 (224) T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGYL 81 (224) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTHH T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhhH Confidence 6899998 99999999999999999999986544332 112233321 332 6788999999888653 1110 Q ss_pred cc-cCHHHHccCC-CCcEEEEcCCC Q psy13054 1026 QL-IGRKQFSLMK-PTAILVNTSRG 1048 (1128) Q Consensus 1026 ~l-i~~~~l~~mk-~ga~lIN~aRG 1048 (1128) ++ .....++.|+ .+..+|++|.. T Consensus 82 n~~~~~~l~~a~~~~~~~~v~~SS~ 106 (224) T 3h2s_A 82 HLDFATHLVSLLRNSDTLAVFILGS 106 (224) T ss_dssp HHHHHHHHHHTCTTCCCEEEEECCG T ss_pred HHHHHHHHHHHHHHcCCcEEEEecc Confidence 11 1234566664 35788888764 |
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
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Probab=91.08 E-value=0.18 Score=48.12 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=29.9 Q ss_pred CCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 701 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 701 gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +++++|+|+|.+|+.+|+.|...|.+|+++|+. T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140) T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140) T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC Confidence 478999999999999999999999999999873 |
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
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Probab=91.01 E-value=0.14 Score=57.75 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=58.9 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCcc------cChHhhhc-----cCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQL------VPLDTLCA-----ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~------~~l~ell~-----~sDvV~l~lPlt 1021 (1128) .|++|.|+|.|.||...++.++.+|+ +|++.++...+.+ .++. ... .++.+.+. ..|+|+.++... T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~ 242 (343) T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNE 242 (343) T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCH T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCH Confidence 68899999999999999999999999 8998876544433 3332 221 12333322 468888777632 Q ss_pred cccccccCHHHHccCCCCcEEEEcCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) +. -...++.|+++..+|.++. T Consensus 243 ~~-----~~~~~~~l~~~G~iv~~g~ 263 (343) T 2dq4_A 243 AA-----IHQGLMALIPGGEARILGI 263 (343) T ss_dssp HH-----HHHHHHHEEEEEEEEECCC T ss_pred HH-----HHHHHHHHhcCCEEEEEec Confidence 21 1345677788888887764 |
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
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Probab=91.00 E-value=0.18 Score=57.89 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=48.2 Q ss_pred CCeEEEEEcChhhHHHHHHHhhC--CCEEEEE-eCCCCchh--hhhcCCcc-cChHhhhccCCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF--KVSKILY-TSRRVKEE--GTALGAQL-VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af--G~~Vi~~-d~~~~~~~--~~~~g~~~-~~l~ell~~sDvV~l~lPlt 1021 (1128) -.+|||||+| +|+.-++.++.. +++++++ |+...+.. ++.+|+.. .++++++...|+|++++|.. T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~ 77 (372) T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST 77 (372) T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC-- T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc Confidence 3579999999 799888877665 6787755 44444333 55677764 48999999999999999854 |
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
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Probab=90.98 E-value=0.15 Score=49.46 Aligned_cols=34 Identities=12% Similarity=0.054 Sum_probs=30.8 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) .++++.|+|+|++|+.+|+.|...|.+|+++|.. T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141) T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141) T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC Confidence 4578999999999999999999999999999973 |
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
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Probab=90.92 E-value=1.6 Score=49.68 Aligned_cols=94 Identities=14% Similarity=0.141 Sum_probs=64.1 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCc--hhh----h------hcCC--cc-cChHhhhccCCEEEE Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVK--EEG----T------ALGA--QL-VPLDTLCAESDFIFV 1016 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~--~~~----~------~~g~--~~-~~l~ell~~sDvV~l 1016 (1128) .+.|++|++||=+ ++.+..+..+..||++|.+..|..-. +.. . ..|. .. .+++|.++.+|||.. T Consensus 185 ~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvyt 264 (353) T 3sds_A 185 GLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVT 264 (353) T ss_dssp SCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEE T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEe Confidence 5799999999976 67778888889999999988776432 111 1 1122 22 489999999999986 Q ss_pred ec--CCCcc----------cccccCHHHHcc--CCCCcEEEEcC Q psy13054 1017 TC--ALTKD----------TEQLIGRKQFSL--MKPTAILVNTS 1046 (1128) Q Consensus 1017 ~l--Plt~~----------T~~li~~~~l~~--mk~ga~lIN~a 1046 (1128) -. +...+ ....++.+.++. +|++++|.-+. T Consensus 265 d~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL 308 (353) T 3sds_A 265 DTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL 308 (353) T ss_dssp CCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS T ss_pred CCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC Confidence 33 22221 113468888887 78888887664 |
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
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Probab=90.86 E-value=0.14 Score=54.35 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=45.1 Q ss_pred CCeEEEEEcChhhHHHHHH--HhhCCCEEEEEeCCCCc-hh-h-hhcCCcc---cChHhhhcc--CCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKL--LKAFKVSKILYTSRRVK-EE-G-TALGAQL---VPLDTLCAE--SDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~--l~afG~~Vi~~d~~~~~-~~-~-~~~g~~~---~~l~ell~~--sDvV~l~lPlt 1021 (1128) .++++|||+|++|+++++. ....|++++++-+..+. .. . .-.|+.. .++++++++ .|++++++|.. T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~ 159 (212) T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST 159 (212) T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch Confidence 4579999999999999997 35678888865433333 22 2 2234432 367777764 89999999943 |
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
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Probab=90.86 E-value=0.38 Score=56.64 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=67.1 Q ss_pred ccCCCeEEEEEcCh----------hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC--Cccc-ChHhhhccCCEEEEecC Q psy13054 953 GLKGATVGIVGLGN----------IGLETAKLLKAFKVSKILYTSRRVKEEGTALG--AQLV-PLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 953 ~L~gktvGIIG~G~----------IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g--~~~~-~l~ell~~sDvV~l~lP 1019 (1128) .+.|++|+|+|+-- =...+++.|...|++|.+|||..........+ +.++ ++++.++.+|+|+++.+ T Consensus 315 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~ 394 (450) T 3gg2_A 315 NVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTE 394 (450) T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSC T ss_pred cCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccC Confidence 57899999999852 36899999999999999999987532222223 4444 67899999999999888 Q ss_pred CCcccccccCHHHHc-cCCCCcEEEEcCCCc Q psy13054 1020 LTKDTEQLIGRKQFS-LMKPTAILVNTSRGG 1049 (1128) Q Consensus 1020 lt~~T~~li~~~~l~-~mk~ga~lIN~aRG~ 1049 (1128) -. +-+. ++.+.+. .|+ +.+++++ |+- T Consensus 395 ~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~~ 421 (450) T 3gg2_A 395 WK-EFRM-PDWSALSQAMA-ASLVIDG-RNV 421 (450) T ss_dssp CG-GGSS-CCHHHHHHHSS-SCEEEES-SCC T ss_pred CH-HHhh-cCHHHHHHhcC-CCEEEEC-CCC Confidence 44 3333 4555554 465 6678885 654 |
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
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Probab=90.85 E-value=0.13 Score=58.50 Aligned_cols=88 Identities=14% Similarity=0.125 Sum_probs=61.1 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHhhhc-----cCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDTLCA-----ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell~-----~sDvV~l~lPlt 1021 (1128) .|++|.|+|.|.||...++.++.+|+ +|++.+....+.+ +++.|...+ ++.+.+. ..|+|+.+.... T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~ 269 (371) T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP 269 (371) T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH Confidence 57899999999999999999999999 6888876555444 455565321 2322222 368888777632 Q ss_pred cccccccCHHHHccCCCCcEEEEcCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) ++ + ...++.++++..+|.++- T Consensus 270 -~~---~-~~~~~~l~~~G~iv~~G~ 290 (371) T 1f8f_A 270 -EI---L-KQGVDALGILGKIAVVGA 290 (371) T ss_dssp -HH---H-HHHHHTEEEEEEEEECCC T ss_pred -HH---H-HHHHHHHhcCCEEEEeCC Confidence 21 1 356777888888888764 |
>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
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Probab=90.79 E-value=0.93 Score=52.75 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=71.9 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEE-EEeCC-------CCchh-----hhhcC-Cc--ccChHhhh-ccCCEEE Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKI-LYTSR-------RVKEE-----GTALG-AQ--LVPLDTLC-AESDFIF 1015 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi-~~d~~-------~~~~~-----~~~~g-~~--~~~l~ell-~~sDvV~ 1015 (1128) ++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.. .-+.+ ..+.+ +. ..+-++++ -.|||++ T Consensus 215 ~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DVli 294 (419) T 3aoe_E 215 DLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVLV 294 (419) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSEEE T ss_pred CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceEEE Confidence 4789999999999999999999999999999 43431 11111 11112 11 12223443 4799999 Q ss_pred EecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1016 VTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1016 l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) -|.. .+.|+.+.-..++ =.+++.-+-+.+- .+| .+.|.+..|..+ T Consensus 295 P~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~A-~~~L~~~Gi~~~ 339 (419) T 3aoe_E 295 LAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN-PEA-EAYLLGKGALVV 339 (419) T ss_dssp ECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC-HHH-HHHHHHHTCEEE T ss_pred eccc-----ccccccchHhhCC-ceEEEECCCCcCC-HHH-HHHHHHCCCEEE Confidence 7754 3567777777775 4588899988863 443 466777666554 |
>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
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Probab=90.77 E-value=0.48 Score=52.05 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=33.6 Q ss_pred cCCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCc Q psy13054 954 LKGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVK 991 (1128) Q Consensus 954 L~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~ 991 (1128) +.||++.|+| .|.||+++++.|...|++|++++++..+ T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~ 155 (287) T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK 155 (287) T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHH T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHH Confidence 6789999999 9999999999999999999888865443 |
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
---|
Probab=90.77 E-value=1.5 Score=48.89 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=50.3 Q ss_pred ccCCCeEEEEEc---ChhhHHHHHHHhhC-CCEEEEEeCCCCc--hh----hhhcCCcc---cChHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVGL---GNIGLETAKLLKAF-KVSKILYTSRRVK--EE----GTALGAQL---VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG~---G~IG~~vA~~l~af-G~~Vi~~d~~~~~--~~----~~~~g~~~---~~l~ell~~sDvV~l~ 1017 (1128) .+.|++|++||= |++.+..+..+..| |++|.+..|..-. +. +.+.|.+. .+++|.++.+|||..- T Consensus 148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 225 (306) T 4ekn_B 148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVT 225 (306) T ss_dssp CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEEC T ss_pred CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeC Confidence 368999999998 58999999999999 9999988765322 11 23345543 4899999999999964 |
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
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Probab=90.72 E-value=0.15 Score=57.38 Aligned_cols=87 Identities=20% Similarity=0.181 Sum_probs=62.1 Q ss_pred CCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------ChHhhh------ccCCEEEEecCC Q psy13054 955 KGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PLDTLC------AESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell------~~sDvV~l~lPl 1020 (1128) .|++|.|+|.| .||...++.++.+|++|++.+....+.+ ..+.|...+ ++.+.+ ...|+|+.++.. T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~ 223 (340) T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG 223 (340) T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC Confidence 57899999998 9999999999999999999987766554 555565321 232222 147888877663 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) +.+ .+.+..++++..+|.++- T Consensus 224 -~~~-----~~~~~~l~~~G~iv~~G~ 244 (340) T 3gms_A 224 -PDG-----NELAFSLRPNGHFLTIGL 244 (340) T ss_dssp -HHH-----HHHHHTEEEEEEEEECCC T ss_pred -hhH-----HHHHHHhcCCCEEEEEee Confidence 222 234577888888888864 |
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
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Probab=90.67 E-value=0.44 Score=56.24 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=69.0 Q ss_pred ccCCCeEEEEEcCh----------hhHHHHHHHhhCCCEEEEEeCCCCchhh-hhc-------------CCccc-ChHhh Q psy13054 953 GLKGATVGIVGLGN----------IGLETAKLLKAFKVSKILYTSRRVKEEG-TAL-------------GAQLV-PLDTL 1007 (1128) Q Consensus 953 ~L~gktvGIIG~G~----------IG~~vA~~l~afG~~Vi~~d~~~~~~~~-~~~-------------g~~~~-~l~el 1007 (1128) .+.|++|+|+|+.- -...+++.|...|++|.+|||....... ... ++.+. +..+. T Consensus 326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (467) T 2q3e_A 326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA 405 (467) T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH T ss_pred ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH Confidence 47899999999874 6789999999999999999998654431 111 23333 67889 Q ss_pred hccCCEEEEecCCCcccccccCHHHH-ccCCCCcEEEEcCCCcc Q psy13054 1008 CAESDFIFVTCALTKDTEQLIGRKQF-SLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1008 l~~sDvV~l~lPlt~~T~~li~~~~l-~~mk~ga~lIN~aRG~l 1050 (1128) ++.+|+|+++..-. +.+. ++.+.+ +.|+...+++++ |+-+ T Consensus 406 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~~~ 446 (467) T 2q3e_A 406 CDGAHAVVICTEWD-MFKE-LDYERIHKKMLKPAFIFDG-RRVL 446 (467) T ss_dssp HTTCSEEEECSCCG-GGGG-SCHHHHHHHSCSSCEEEES-SCTT T ss_pred HhCCcEEEEecCCh-hhhc-CCHHHHHHhcCCCCEEEeC-CCcC Confidence 99999999998854 4443 365555 567776668876 6543 |
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
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Probab=90.52 E-value=0.16 Score=53.55 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=29.8 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) .++++||||+|++|+.+|+.+...|.+|.+|++. T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~ 60 (215) T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRN 60 (215) T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC Confidence 4578999999999999999999999999999864 |
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
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Probab=90.49 E-value=0.17 Score=57.25 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=58.3 Q ss_pred eEEEEEcChhhHHHHHHHhhC---------CCEEEEEeCCC-CchhhhhcCCcccChHhhhccCCEEEEecCCCcccccc Q psy13054 958 TVGIVGLGNIGLETAKLLKAF---------KVSKILYTSRR-VKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~af---------G~~Vi~~d~~~-~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) +|||||+|.||+.+++.++.. +++++.+-++. .+...........++++++ +.|+|+.+.|....... T Consensus 5 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~~- 82 (332) T 2ejw_A 5 KIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPLR- 82 (332) T ss_dssp EEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHHH- T ss_pred EEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcHHHHH- Confidence 699999999999999998665 46665544333 2221111111234788888 99999999885421111 Q ss_pred cCHHHHccCCCCcEEEEcCCCcc-cCHHHHHHHHhcC Q psy13054 1028 IGRKQFSLMKPTAILVNTSRGGL-LDQEALVEFLKDK 1063 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG~l-Vde~aL~~aL~~g 1063 (1128) -..+.++.|--+|...-..+ -.-+.|.++.++. T Consensus 83 ---~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~ 116 (332) T 2ejw_A 83 ---LVLPALEAGIPLITANKALLAEAWESLRPFAEEG 116 (332) T ss_dssp ---HHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT T ss_pred ---HHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC Confidence 11234444544444211111 2456666666655 |
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
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Probab=90.44 E-value=0.19 Score=49.06 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=30.1 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +++.|+|+|++|+.+|+.|+..|.+|+++|.. T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~ 39 (140) T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETS 39 (140) T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESC T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC Confidence 57999999999999999999999999999984 |
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
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Probab=90.38 E-value=0.16 Score=57.26 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=60.7 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhC--CCEEEEEeCCCCchh-hhhcCCccc-ChH-------hhhc--cCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAF--KVSKILYTSRRVKEE-GTALGAQLV-PLD-------TLCA--ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~af--G~~Vi~~d~~~~~~~-~~~~g~~~~-~l~-------ell~--~sDvV~l~lPlt 1021 (1128) .|++|.|+|.|.||...++.++.+ |++|++.++...+.+ +++.|+..+ +.. ++.. ..|+|+.++... T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~ 249 (344) T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE 249 (344) T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh Confidence 588999999999999999999999 999988876554444 555665432 221 1221 468888777632 Q ss_pred cccccccCHHHHccCCCCcEEEEcCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) +. + ...++.++++..+|.++- T Consensus 250 ~~----~-~~~~~~l~~~G~iv~~g~ 270 (344) T 2h6e_A 250 ET----T-YNLGKLLAQEGAIILVGM 270 (344) T ss_dssp HH----H-HHHHHHEEEEEEEEECCC T ss_pred HH----H-HHHHHHhhcCCEEEEeCC Confidence 11 1 345677778888877763 |
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
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Probab=90.33 E-value=0.16 Score=56.33 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=59.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--ChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--PLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .|++|.|+|.|.+|...++.++.+|++|++.+ +..+.+ .++.|+..+ +.+++-...|+|+-+... +.+ .. T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~-~~~-----~~ 214 (315) T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNS-QNA-----AA 214 (315) T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------T T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCc-hhH-----HH Confidence 58899999999999999999999999999988 555544 556665432 223333457888876653 222 34 Q ss_pred HHccCCCCcEEEEcC Q psy13054 1032 QFSLMKPTAILVNTS 1046 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~a 1046 (1128) .++.++++..+|.++ T Consensus 215 ~~~~l~~~G~~v~~g 229 (315) T 3goh_A 215 LVPSLKANGHIICIQ 229 (315) T ss_dssp TGGGEEEEEEEEEEC T ss_pred HHHHhcCCCEEEEEe Confidence 567788888888874 |
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
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Probab=90.31 E-value=0.25 Score=55.30 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=68.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchh--hhh--c------CCcc-cChHhhhccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEE--GTA--L------GAQL-VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~--~~~--~------g~~~-~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) ++|+|||.|.+|..++-.+...+ -+++.+|....+.+ +.+ . ..+. .+-.+.++.||+|+++.+... T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~- 79 (310) T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQ- 79 (310) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCC- T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCC- Confidence 47999999999999999997655 58999987654332 111 1 1111 133677999999999987432 Q ss_pred cccc-------cCH-------HHHccCCCCcEEEEcCCCcccCHHHHHHH--HhcCCceEE Q psy13054 1024 TEQL-------IGR-------KQFSLMKPTAILVNTSRGGLLDQEALVEF--LKDKKIGGA 1068 (1128) Q Consensus 1024 T~~l-------i~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~a--L~~g~i~ga 1068 (1128) ..++ .|. +.+....|++++||++-.-=+....+.+. +...++.|. T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~ 140 (310) T 2xxj_A 80 RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGS 140 (310) T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCGGGEEEC T ss_pred CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHHcCCCHHHEEec Confidence 2222 011 12333478999999865444444444444 333466565 |
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
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Probab=90.30 E-value=0.3 Score=57.22 Aligned_cols=66 Identities=12% Similarity=0.158 Sum_probs=47.0 Q ss_pred CCeEEEEEcChhhHHHHHHHhhC-CCEEEE-EeCCCCchh-hh----hcC---Cc-cc----ChHhhhc--cCCEEEEec Q psy13054 956 GATVGIVGLGNIGLETAKLLKAF-KVSKIL-YTSRRVKEE-GT----ALG---AQ-LV----PLDTLCA--ESDFIFVTC 1018 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~af-G~~Vi~-~d~~~~~~~-~~----~~g---~~-~~----~l~ell~--~sDvV~l~l 1018 (1128) -.+|||||+|.||+..++.++.. |+++++ +|+...+.. .. ..| .. +. +++++++ +.|+|++++ T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t 99 (444) T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS 99 (444) T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC Confidence 35799999999999999998876 777764 454433332 11 234 23 34 8999997 589999999 Q ss_pred CCC Q psy13054 1019 ALT 1021 (1128) Q Consensus 1019 Plt 1021 (1128) |.. T Consensus 100 p~~ 102 (444) T 2ixa_A 100 PWE 102 (444) T ss_dssp CGG T ss_pred CcH Confidence 943 |
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
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Probab=90.28 E-value=0.55 Score=53.29 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=42.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchh---hhhc--------------------CCcc-cChHhhhccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEE---GTAL--------------------GAQL-VPLDTLCAES 1011 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~---~~~~--------------------g~~~-~~l~ell~~s 1011 (1128) .+|||+|+|+||+.+++.+... ++++++++....... .+.. +... .+.++++... T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v 82 (343) T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA 82 (343) T ss_dssp EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC T ss_pred eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC Confidence 3799999999999999998765 688777754322111 0100 1111 1345666799 Q ss_pred CEEEEecCCC Q psy13054 1012 DFIFVTCALT 1021 (1128) Q Consensus 1012 DvV~l~lPlt 1021 (1128) |+|+.|+|.. T Consensus 83 DiV~eatg~~ 92 (343) T 2yyy_A 83 DIVVDGAPKK 92 (343) T ss_dssp SEEEECCCTT T ss_pred CEEEECCCcc Confidence 9999998854 |
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
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Probab=90.27 E-value=0.4 Score=54.14 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=67.7 Q ss_pred eEEEEEcChhhHHHHHHHhh---------CCCEEEEEeCCCCch-------h-h--h-hcCCccc--ChHhhhc--cCCE Q psy13054 958 TVGIVGLGNIGLETAKLLKA---------FKVSKILYTSRRVKE-------E-G--T-ALGAQLV--PLDTLCA--ESDF 1013 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~a---------fG~~Vi~~d~~~~~~-------~-~--~-~~g~~~~--~l~ell~--~sDv 1013 (1128) +|||||+|.||+.+++.++. .+.++++.-++.... . . . ..+..+. ++++++. +.|+ T Consensus 4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDv 83 (327) T 3do5_A 4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDV 83 (327) T ss_dssp EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCSE T ss_pred EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCCE Confidence 69999999999999999975 477777665443211 0 0 0 1122222 8999886 4899 Q ss_pred EEEecCCCcccccccCHHHHccCCCCcEEEEcCCCccc-CHHHHHHHHhcCCc Q psy13054 1014 IFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLL-DQEALVEFLKDKKI 1065 (1128) Q Consensus 1014 V~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lV-de~aL~~aL~~g~i 1065 (1128) |+.++|....+-. .-.-..+.++.|.-+|...-+.+. +-+.|.++.++... T Consensus 84 Vv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~ 135 (327) T 3do5_A 84 LIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV 135 (327) T ss_dssp EEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC T ss_pred EEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC Confidence 9999995432211 112346677888888877555543 55677777666654 |
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
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Probab=90.20 E-value=0.17 Score=57.09 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=59.1 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHh-hhc-----cCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDT-LCA-----ESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~e-ll~-----~sDvV~l~lPl 1020 (1128) .|.+|.|+|.|.||...++.++.+|+ +|++.++...+.+ +++.|+..+ ++.+ +.+ ..|+|+-+... T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~ 245 (352) T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD 245 (352) T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC Confidence 57899999999999999999999999 7888876555444 555665421 2222 211 36888776653 Q ss_pred CcccccccCHHHHccCCCCcEEEEcC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .+. -...++.++++..++.++ T Consensus 246 ~~~-----~~~~~~~l~~~G~~v~~G 266 (352) T 3fpc_A 246 VHT-----FAQAVKMIKPGSDIGNVN 266 (352) T ss_dssp TTH-----HHHHHHHEEEEEEEEECC T ss_pred hHH-----HHHHHHHHhcCCEEEEec Confidence 211 134566777777777775 |
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
---|
Probab=90.18 E-value=0.14 Score=58.06 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=61.4 Q ss_pred CCCeEEEE-EcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc------cChHhhhc-----cCCEEEEecCCC Q psy13054 955 KGATVGIV-GLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL------VPLDTLCA-----ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGII-G~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~------~~l~ell~-----~sDvV~l~lPlt 1021 (1128) .|++|.|+ |.|.||..+++.++..|++|++.+.+..+.+ .++.|... .++.+.+. ..|+|+.++... T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~ 246 (353) T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA 246 (353) T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH Confidence 57899999 6899999999999999999999886655444 44555432 12333322 478888777631 Q ss_pred cccccccCHHHHccCCCCcEEEEcCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) . -...+..|+++..+|.++. T Consensus 247 -----~-~~~~~~~l~~~G~iv~~g~ 266 (353) T 4dup_A 247 -----Y-FERNIASLAKDGCLSIIAF 266 (353) T ss_dssp -----G-HHHHHHTEEEEEEEEECCC T ss_pred -----H-HHHHHHHhccCCEEEEEEe Confidence 1 2456777888888888764 |
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
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Probab=90.11 E-value=0.2 Score=46.40 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=30.7 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCC-CeEEEEcCC Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFK-VSKILYTSR 733 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg-~~vi~y~~~ 733 (1128) .+++++|+|.|.||+.+++.+...| .+|+++++. T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118) T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118) T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC Confidence 4689999999999999999999999 888888874 |
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
---|
Probab=90.02 E-value=0.13 Score=57.76 Aligned_cols=89 Identities=18% Similarity=0.095 Sum_probs=62.3 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-hhcCCccc------ChHhhhc-----cCCEEEEecCC Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-G-TALGAQLV------PLDTLCA-----ESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-~~~g~~~~------~l~ell~-----~sDvV~l~lPl 1020 (1128) .|++|.|+|. |.||..+++.++..|++|++.+++..+.+ . ++.|...+ ++.+.+. ..|+|+.+... T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 228 (336) T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG 228 (336) T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc Confidence 5889999999 99999999999999999999886655444 3 45565321 2222221 37888876652 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) + .-...+..|+++..+|.++... T Consensus 229 -~-----~~~~~~~~l~~~G~iv~~G~~~ 251 (336) T 4b7c_A 229 -E-----ILDTVLTRIAFKARIVLCGAIS 251 (336) T ss_dssp -H-----HHHHHHTTEEEEEEEEECCCGG T ss_pred -c-----hHHHHHHHHhhCCEEEEEeecc Confidence 1 1245677788888888886544 |
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
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Probab=89.95 E-value=0.31 Score=57.51 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=27.0 Q ss_pred CeEEEEEcChhhHHHHHHHh-hCCC---EEEEEeCCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLK-AFKV---SKILYTSRRV 990 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~-afG~---~Vi~~d~~~~ 990 (1128) ++|.|||+|.||+.+|+.|. ..++ +|++.|+... T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~ 51 (480) T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGT 51 (480) T ss_dssp SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCC T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchh Confidence 46999999999999999884 4555 6888876544 |
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
---|
Probab=89.90 E-value=0.16 Score=60.28 Aligned_cols=114 Identities=18% Similarity=0.201 Sum_probs=72.6 Q ss_pred CCCeEEEEEcChh-hHHHHHHHh----hC-CCEEEEEeCCCCchhh-----h----hcC----Ccc-cChHhhhccCCEE Q psy13054 955 KGATVGIVGLGNI-GLETAKLLK----AF-KVSKILYTSRRVKEEG-----T----ALG----AQL-VPLDTLCAESDFI 1014 (1128) Q Consensus 955 ~gktvGIIG~G~I-G~~vA~~l~----af-G~~Vi~~d~~~~~~~~-----~----~~g----~~~-~~l~ell~~sDvV 1014 (1128) ...+|+|||.|.. |.++|..|. .+ +.+|+.||....+.+. . ..+ +.. .++++.++.||+| T Consensus 27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~V 106 (472) T 1u8x_X 27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 106 (472) T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEE Confidence 3568999999998 666765553 34 6689999976643221 0 111 122 2678899999999 Q ss_pred EEecCCCcc---cc--------cccC----------------------HHHHccCCCCcEEEEcCCCcccCHHHHHHHHh Q psy13054 1015 FVTCALTKD---TE--------QLIG----------------------RKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128) Q Consensus 1015 ~l~lPlt~~---T~--------~li~----------------------~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128) ++++|.... |+ +++. .+.+....|+|++||.+-.-=+-+.++.+... T Consensus 107 Viaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p 186 (472) T 1u8x_X 107 MAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRP 186 (472) T ss_dssp EECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHST T ss_pred EEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCC Confidence 999985210 11 1110 02345557999999998887665666666554 Q ss_pred cCCceEE Q psy13054 1062 DKKIGGA 1068 (1128) Q Consensus 1062 ~g~i~ga 1068 (1128) ..++-|. T Consensus 187 ~~rViG~ 193 (472) T 1u8x_X 187 NSKILNI 193 (472) T ss_dssp TCCEEEC T ss_pred CCCEEEe Confidence 4466665 |
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
---|
Probab=89.88 E-value=0.16 Score=56.74 Aligned_cols=87 Identities=16% Similarity=0.076 Sum_probs=59.6 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-------cChHhhhc-----cCCEEEEecCC Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-------VPLDTLCA-----ESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-------~~l~ell~-----~sDvV~l~lPl 1020 (1128) .|+++.|+|. |.||+.+++.++..|++|++.+.+..+.+ .++.|... .++.+.+. ..|+|+.+... T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~ 224 (333) T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG 224 (333) T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh Confidence 5889999998 99999999999999999998886544333 33444321 12223222 36888877652 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) + + -...++.++++..+|.++- T Consensus 225 -~-~----~~~~~~~l~~~G~~v~~g~ 245 (333) T 1v3u_A 225 -E-F----LNTVLSQMKDFGKIAICGA 245 (333) T ss_dssp -H-H----HHHHHTTEEEEEEEEECCC T ss_pred -H-H----HHHHHHHHhcCCEEEEEec Confidence 1 1 2456777888888888764 |
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
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Probab=89.87 E-value=0.37 Score=53.82 Aligned_cols=88 Identities=22% Similarity=0.273 Sum_probs=58.2 Q ss_pred eEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchhh--h---h----c--C--Ccc-cChHhhhccCCEEEEecCCCc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEEG--T---A----L--G--AQL-VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~~--~---~----~--g--~~~-~~l~ell~~sDvV~l~lPlt~ 1022 (1128) +|+|||.|.+|..+|..+...|+ +++.+|....+... . + . . +.. .+. +.++.||+|+++.+.. T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~- 78 (308) T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG- 78 (308) T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC- T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC- Confidence 58999999999999998876566 69999977654331 1 1 1 2 122 244 6789999999997743 Q ss_pred cccccc-------C----H---HHHccCCCCcEEEEcCC Q psy13054 1023 DTEQLI-------G----R---KQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1023 ~T~~li-------~----~---~~l~~mk~ga~lIN~aR 1047 (1128) ...++- | . +.+....|++.+|+++- T Consensus 79 ~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308) T 2d4a_B 79 RKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308) T ss_dssp CCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC Confidence 222321 0 0 12333458999999865 |
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* | Back alignment and structure |
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Probab=89.85 E-value=1.6 Score=49.03 Aligned_cols=90 Identities=12% Similarity=0.092 Sum_probs=61.2 Q ss_pred cCCCeEEE-----EEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh-hhcCCcc-cChHhhhccCCEEEEecCCC--c-- Q psy13054 954 LKGATVGI-----VGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG-TALGAQL-VPLDTLCAESDFIFVTCALT--K-- 1022 (1128) Q Consensus 954 L~gktvGI-----IG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~-~~~g~~~-~~l~ell~~sDvV~l~lPlt--~-- 1022 (1128) +. .+|++ ||=+++.+..+..+..||++|.+..|..-.+.. ...+++. .+++|.++.+|||..-.=.. . T Consensus 167 l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~ 245 (324) T 1js1_X 167 PK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDN 245 (324) T ss_dssp CE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTC T ss_pred ee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEECCHHHHhCCCCEEEecCcccCCCcc Confidence 56 78999 999999999999999999999998775543321 1124443 48999999999999733211 0 Q ss_pred -------ccccccCHHHHccCCCCcEEEEc Q psy13054 1023 -------DTEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1023 -------~T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) .....++.+.++.+| +++|.-+ T Consensus 246 ~~~~~~r~~~y~vt~e~l~~a~-~ai~MHc 274 (324) T 1js1_X 246 YGQILSTDRNWTVGDRQMAVTN-NAYFMHC 274 (324) T ss_dssp TTCCCCCCTTSSBCHHHHTTSS-SCEEECC T ss_pred ccchHHHhcCcccCHHHHHhcC-CcEEECC Confidence 011334666666666 6655544 |
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
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Probab=89.73 E-value=0.16 Score=58.99 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=47.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC---CEEEEEeCCCCchh--hhhc------CCc--------ccChHhhhcc--CCEEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK---VSKILYTSRRVKEE--GTAL------GAQ--------LVPLDTLCAE--SDFIF 1015 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG---~~Vi~~d~~~~~~~--~~~~------g~~--------~~~l~ell~~--sDvV~ 1015 (1128) ++|+|+|.|.||+.+++.|...| .+|++++++..+.. ..+. .+. ..++++++++ .|+|+ T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405) T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405) T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE Confidence 57999999999999999998887 48888887665543 1111 121 1246678887 89999 Q ss_pred EecCC Q psy13054 1016 VTCAL 1020 (1128) Q Consensus 1016 l~lPl 1020 (1128) +++|. T Consensus 82 n~ag~ 86 (405) T 4ina_A 82 NIALP 86 (405) T ss_dssp ECSCG T ss_pred ECCCc Confidence 99884 |
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
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Probab=89.68 E-value=0.36 Score=54.66 Aligned_cols=90 Identities=21% Similarity=0.269 Sum_probs=61.0 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCC-------------------Cchh-hh----hc--CCc--cc- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRR-------------------VKEE-GT----AL--GAQ--LV- 1002 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~-------------------~~~~-~~----~~--g~~--~~- 1002 (1128) .+.+++|.|||+|.+|.++|+.|...|. ++.++|... .+.+ +. +. .++ .. T Consensus 31 kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~ 110 (340) T 3rui_A 31 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK 110 (340) T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC T ss_pred HHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEe Confidence 6899999999999999999999998887 555666543 1111 10 11 111 01 Q ss_pred ---------------------ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcC Q psy13054 1003 ---------------------PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1003 ---------------------~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .+.++++++|+|+.++- +.+|+.+++..-.+ .+.-+|+.+ T Consensus 111 ~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~---~~~plI~aa 171 (340) T 3rui_A 111 LSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA 171 (340) T ss_dssp CCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHH---TTCEEEEEE T ss_pred ccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHH---cCCcEEEee Confidence 24578899999998765 67788888765544 344566653 |
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
---|
Probab=89.52 E-value=0.7 Score=52.59 Aligned_cols=90 Identities=22% Similarity=0.210 Sum_probs=64.2 Q ss_pred CCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------ChHhhh---ccCCEEEEecCCCcc Q psy13054 955 KGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PLDTLC---AESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell---~~sDvV~l~lPlt~~ 1023 (1128) .|++|.|+| .|.||...++.++.+|++|++.+ +..+.+ .++.|+..+ ++.+.+ ...|+|+.++..... T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~ 261 (375) T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTE 261 (375) T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhh Confidence 588999999 79999999999999999998877 334433 555665431 233322 358999988874422 Q ss_pred cccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) + + ...+..++++..+|.++... T Consensus 262 ~---~-~~~~~~l~~~G~iv~~g~~~ 283 (375) T 2vn8_A 262 T---W-APDFLKKWSGATYVTLVTPF 283 (375) T ss_dssp H---H-GGGGBCSSSCCEEEESCCSH T ss_pred h---h-HHHHHhhcCCcEEEEeCCCc Confidence 1 1 24567889999999998644 |
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
---|
Probab=89.48 E-value=0.28 Score=54.53 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=30.9 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) -+.|+|||||+|.+|..+|+.+. -|.+|++||+.. T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~ 44 (293) T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE 44 (293) T ss_dssp --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH T ss_pred cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH Confidence 35799999999999999999999 999999999743 |
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
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Probab=89.43 E-value=0.15 Score=58.08 Aligned_cols=88 Identities=18% Similarity=0.142 Sum_probs=63.1 Q ss_pred CCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------ChHhhhc-----cCCEEEEecCCC Q psy13054 955 KGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PLDTLCA-----ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell~-----~sDvV~l~lPlt 1021 (1128) .|++|.|+| .|.||...++.++.+|++|++.++...+.+ .++.|+..+ ++.+.++ ..|+|+.++.. T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~- 241 (362) T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG- 241 (362) T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT- T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH- Confidence 578999999 799999999999999999998886544433 445555321 3333332 36999888763 Q ss_pred cccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) + .-...++.|+++..+|.++-. T Consensus 242 ~-----~~~~~~~~l~~~G~iv~~g~~ 263 (362) T 2c0c_A 242 A-----MFDLAVDALATKGRLIVIGFI 263 (362) T ss_dssp H-----HHHHHHHHEEEEEEEEECCCG T ss_pred H-----HHHHHHHHHhcCCEEEEEeCC Confidence 1 123567888888899888754 |
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
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Probab=89.41 E-value=0.17 Score=54.62 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=31.0 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCe-EEEEcCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSR 733 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~-vi~y~~~ 733 (1128) ++.+.+|||||+|++|+.+|+.+...|.+ |.+||+. T Consensus 7 ~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~ 43 (266) T 3d1l_A 7 SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT 43 (266) T ss_dssp CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSS T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCC Confidence 35567899999999999999999988988 7888763 |
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
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Probab=89.41 E-value=0.34 Score=52.50 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=46.7 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhh----hhcCC-cccChHhhhcc-CCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEG----TALGA-QLVPLDTLCAE-SDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~----~~~g~-~~~~l~ell~~-sDvV~l~lP 1019 (1128) .+++|.|.|.|.||+.+++.|..-|.+|++.++...+... ....+ ...+++++++. .|+|+.+.. T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286) T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286) T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC Confidence 4678999999999999999999999999999876543210 00111 11245567776 999987764 |
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
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Probab=89.40 E-value=0.28 Score=55.58 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=56.1 Q ss_pred CCCeEEEEEcChhhHHH-HHHH-hhCCCE-EEEEeCCCC---chh-hhhcCCccc-----ChHhhhc----cCCEEEEec Q psy13054 955 KGATVGIVGLGNIGLET-AKLL-KAFKVS-KILYTSRRV---KEE-GTALGAQLV-----PLDTLCA----ESDFIFVTC 1018 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~v-A~~l-~afG~~-Vi~~d~~~~---~~~-~~~~g~~~~-----~l~ell~----~sDvV~l~l 1018 (1128) .+++|.|+|.|.||... ++.+ +.+|++ |++.++... +.+ +++.|+..+ ++.+ +. ..|+|+-+. T Consensus 172 ~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg~Dvvid~~ 250 (357) T 2b5w_A 172 DPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQMDFIYEAT 250 (357) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCCEEEEEECS T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCCCCEEEECC Confidence 45899999999999999 9999 999998 999987665 444 555665432 2222 21 356666655 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcC Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) ... .+ + ...++.++++..+|.++ T Consensus 251 g~~-~~---~-~~~~~~l~~~G~iv~~g 273 (357) T 2b5w_A 251 GFP-KH---A-IQSVQALAPNGVGALLG 273 (357) T ss_dssp CCH-HH---H-HHHHHHEEEEEEEEECC T ss_pred CCh-HH---H-HHHHHHHhcCCEEEEEe Confidence 421 11 1 23455566666666664 |
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
1128 | ||||
d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 8e-35 | |
d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 3e-17 | |
d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 2e-06 | |
d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 3e-34 | |
d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 5e-22 | |
d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 0.001 | |
d1ygya1 | 184 | c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase | 7e-33 | |
d1ygya1 | 184 | c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase | 2e-19 | |
d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 1e-30 | |
d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 9e-16 | |
d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 3e-05 | |
d1sc6a1 | 188 | c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase | 5e-30 | |
d1sc6a1 | 188 | c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase | 1e-19 | |
d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 2e-18 | |
d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 4e-07 | |
d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 0.002 | |
d1j4aa1 | 197 | c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto | 3e-18 | |
d1j4aa1 | 197 | c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto | 2e-07 | |
d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 1e-15 | |
d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 3e-05 | |
d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 0.003 | |
d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 0.004 | |
d1gdha2 | 129 | c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog | 3e-14 | |
d1gdha2 | 129 | c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog | 2e-09 | |
d1gdha2 | 129 | c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog | 1e-04 | |
d1dxya2 | 131 | c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa | 1e-12 | |
d1dxya2 | 131 | c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa | 6e-11 | |
d1dxya2 | 131 | c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa | 2e-08 | |
d1j4aa2 | 134 | c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen | 3e-12 | |
d1j4aa2 | 134 | c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen | 2e-09 | |
d1j4aa2 | 134 | c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen | 4e-06 | |
d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 8e-12 | |
d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 4e-09 | |
d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 2e-06 | |
d1ygya2 | 130 | c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy | 1e-11 | |
d1ygya2 | 130 | c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy | 5e-08 | |
d1ygya2 | 130 | c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy | 4e-05 | |
d2naca2 | 186 | c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas | 9e-09 | |
d2naca2 | 186 | c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas | 5e-05 | |
d2naca2 | 186 | c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas | 7e-05 | |
d1sc6a2 | 132 | c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh | 5e-07 | |
d1qp8a2 | 121 | c.23.12.1 (A:1-82,A:264-302) Putative formate dehy | 2e-06 | |
d1qp8a2 | 121 | c.23.12.1 (A:1-82,A:264-302) Putative formate dehy | 2e-06 | |
d1qp8a2 | 121 | c.23.12.1 (A:1-82,A:264-302) Putative formate dehy | 3e-04 | |
d1pjqa1 | 113 | c.2.1.11 (A:1-113) Siroheme synthase CysG, domain | 9e-05 | |
d2jfga1 | 93 | c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D- | 0.004 |
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Score = 129 bits (325), Expect = 8e-35 Identities = 55/193 (28%), Positives = 81/193 (41%), Gaps = 5/193 (2%) Query: 909 SDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIG 968 + AE + L + +RR EG K I + W + L T+GI G G+IG Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSW--PGWEPLELVGEKLDNKTLGIYGFGSIG 59 Query: 969 LETAKLLKAFKVSKILYTSRRVKEEGTA--LGAQLVPLDTLCAESDFIFVTCALTKDTEQ 1026 AK + F + + + R A LD+L + S F + T +T Sbjct: 60 QALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRY 119 Query: 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQ 1086 + + AI+VNT+RG L+D E +V L+ ++ AG DV EP + Sbjct: 120 FFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYD 178 Query: 1087 LDNCVLTPHTSSA 1099 L N L PH SA Sbjct: 179 LPNTFLFPHIGSA 191 |
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Score = 79.2 bits (194), Expect = 3e-17 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 1/120 (0%) Query: 281 KWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR 340 K G D +++ + + LD+L + S F + T +T + Sbjct: 64 KRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK 123 Query: 341 KQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNC 400 + AI++NT+RG L+D E +V L+ ++ AG DV EP + L N Sbjct: 124 ATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNT 182 |
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Score = 47.2 bits (111), Expect = 2e-06 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 9/116 (7%) Query: 654 SDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIG 713 + AE + L + +RR EG K I + W + L T+GI G G+IG Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSW--PGWEPLELVGEKLDNKTLGIYGFGSIG 59 Query: 714 LETAKLLKAFKVSKILYTSRRVKEEGQLFSLVYDFCRYSIGGVTIKRLVKKTFILS 769 AK + F + + + R + + ++ L+ + S Sbjct: 60 QALAKRAQGFDMDIDYFDTHRASSS-------DEASYQATFHDSLDSLLSVSQFFS 108 |
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Score = 127 bits (320), Expect = 3e-34 Identities = 48/189 (25%), Positives = 80/189 (42%), Gaps = 5/189 (2%) Query: 911 TVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLE 970 +VAE+ + + +++ R + + G W + + L+ VG V G IGL Sbjct: 2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCV---SHAYDLEAMHVGTVAAGRIGLA 58 Query: 971 TAKLLKAF--KVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLI 1028 + L F + E + + D + + C L +TE +I Sbjct: 59 VLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMI 118 Query: 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD 1088 + L K A +VNT+RG L D++A+ L+ ++ G DV P+P P DHP + Sbjct: 119 NDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMP 178 Query: 1089 NCVLTPHTS 1097 +TPH S Sbjct: 179 YNGMTPHIS 187 |
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Score = 92.8 bits (229), Expect = 5e-22 Identities = 28/138 (20%), Positives = 53/138 (38%) Query: 263 SDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESD 322 + + + G + ++ + E + + D Sbjct: 43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCD 102 Query: 323 FIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 + + C L +TE +I + L K A ++NT+RG L D++A+ L+ ++ G DV Sbjct: 103 VVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDV 162 Query: 383 MIPEPLPADHPLVQLDNC 400 P+P P DHP + Sbjct: 163 WFPQPAPKDHPWRTMPYN 180 |
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Score = 38.8 bits (89), Expect = 0.001 Identities = 8/51 (15%), Positives = 21/51 (41%) Query: 656 TVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGI 706 +VAE+ + + +++ R + + G W + ++ + TV Sbjct: 2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAA 52 |
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773] Score = 123 bits (310), Expect = 7e-33 Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 6/187 (3%) Query: 909 SDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIG 968 + AE+ + L +A SR+ + W TVG+VGLG IG Sbjct: 2 IHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGK-----TVGVVGLGRIG 56 Query: 969 LETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLI 1028 A+ + AF + Y LG +L+ LD L A +DFI V T +T LI Sbjct: 57 QLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLI 116 Query: 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLD 1088 ++ + KP I+VN +RGGL+D+ AL + + + AGLDV EP D PL +L Sbjct: 117 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPLFELA 175 Query: 1089 NCVLTPH 1095 V+TPH Sbjct: 176 QVVVTPH 182 |
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773] Score = 85.0 bits (209), Expect = 2e-19 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 1/126 (0%) Query: 275 NGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDT 334 + + + + LG +L+ LD L A +DFI V T +T Sbjct: 53 GRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPET 112 Query: 335 EQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPL 394 LI ++ + KP I++N +RGGL+D+ AL + + + AGLDV EP D PL Sbjct: 113 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCT-DSPL 171 Query: 395 VQLDNC 400 +L Sbjct: 172 FELAQV 177 |
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Score = 117 bits (293), Expect = 1e-30 Identities = 60/191 (31%), Positives = 90/191 (47%), Gaps = 4/191 (2%) Query: 910 DTVAEYNIGLAIAVSRRFQEGRKCITSGEWA--LKQTHIIGPNIMGLKGATVGIVGLGNI 967 + A+ + + + RR + + G ++Q + ++G T+GI+GLG + Sbjct: 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60 Query: 968 GLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVP-LDTLCAESDFIFVTCALTKDTEQ 1026 G A KAF + + Y ALG Q V L L SD + + C L + Sbjct: 61 GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120 Query: 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLV 1085 LI M+ A LVNT+RGGL+D++AL + LK+ +I GA LDV EP + PL Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180 Query: 1086 QLDNCVLTPHT 1096 N + TPH Sbjct: 181 DAPNLICTPHA 191 |
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Score = 74.7 bits (182), Expect = 9e-16 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Query: 277 SQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQ 336 Q R + ++ + ++ L L SD + + C L + Sbjct: 61 GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120 Query: 337 LIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLP-ADHPLV 395 LI M+ A L+NT+RGGL+D++AL + LK+ +I GA LDV EP + PL Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180 Query: 396 QLDNC 400 N Sbjct: 181 DAPNL 185 |
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Score = 43.9 bits (102), Expect = 3e-05 Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 655 DTVAEYNIGLAIAVSRRFQEGRKCITSGEWA--LKQTHIIGPNIMGLKGATVGIVGLGNI 712 + A+ + + + RR + + G ++Q + ++G T+GI+GLG + Sbjct: 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60 Query: 713 G 713 G Sbjct: 61 G 61 |
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562] Score = 115 bits (289), Expect = 5e-30 Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 11/193 (5%) Query: 909 SDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIG 968 + +VAE IG + + R E G +GI+G G+IG Sbjct: 2 TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGK-----KLGIIGYGHIG 56 Query: 969 LETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLI 1028 + L ++ + Y G A Q+ L L SD + + T+ ++ Sbjct: 57 TQLGILAESLGMYVYFYDIENKLPLGNA--TQVQHLSDLLNMSDVVSLHVPENPSTKNMM 114 Query: 1029 GRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL----PADHPL 1084 G K+ SLMKP ++L+N SRG ++D AL + L K + GA +DV EP P PL Sbjct: 115 GAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPL 174 Query: 1085 VQLDNCVLTPHTS 1097 + DN +LTPH Sbjct: 175 AEFDNVLLTPHIG 187 |
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562] Score = 85.4 bits (210), Expect = 1e-19 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 4/128 (3%) Query: 277 SQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQ 336 Y + E Q+ L L SD + + T+ Sbjct: 53 GHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKN 112 Query: 337 LIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL----PADH 392 ++G K+ SLMKP ++LIN SRG ++D AL + L K + GA +DV EP P Sbjct: 113 MMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTS 172 Query: 393 PLVQLDNC 400 PL + DN Sbjct: 173 PLAEFDNV 180 |
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Score = 82.6 bits (202), Expect = 2e-18 Identities = 47/203 (23%), Positives = 80/203 (39%), Gaps = 19/203 (9%) Query: 908 SSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNI 967 S +AE+ + + + R + + + +G++ T I +G + V G Sbjct: 1 SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFI--GKELGQQTVGVMGTGHIGQ 58 Query: 968 GLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQL 1027 KV +G V L+ L +SD I + + + Sbjct: 59 VAIKLFKGFGAKV----IAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHI 114 Query: 1028 IGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPL--------- 1078 I F+LMKP AI++NT+R L+D +A++ LK K+ G G+D E Sbjct: 115 INEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHG 174 Query: 1079 ----PADHPLVQLDNCVLTPHTS 1097 P L+ + N VL+PH + Sbjct: 175 SFKDPLWDELLGMPNVVLSPHIA 197 |
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Score = 49.8 bits (117), Expect = 4e-07 Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 12/149 (8%) Query: 277 SQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQ 336 + + G V L+ L +SD I + + Sbjct: 54 GHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTH 113 Query: 337 LIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQ 396 +I F+LMKP AI+INT+R L+D +A++ LK K+ G G+D E + Sbjct: 114 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKH 173 Query: 397 LDNCGGAGLDVMIPEPLPADHPLVQLDNC 425 P L+ + N Sbjct: 174 ------------GSFKDPLWDELLGMPNV 190 |
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Score = 38.7 bits (88), Expect = 0.002 Identities = 7/39 (17%), Positives = 18/39 (46%) Query: 653 SSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHI 691 S +AE+ + + + R + + + +G++ T I Sbjct: 1 SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFI 39 |
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587] Score = 82.2 bits (201), Expect = 3e-18 Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 19/200 (9%) Query: 910 DTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGL 969 + +AE+ A + R+ + + + + T IG ++ VG+VG G+IG Sbjct: 2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPT--IGRE---VRDQVVGVVGTGHIGQ 56 Query: 970 ETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 ++++ F I E G + LD L ++D I + +I Sbjct: 57 VFMQIMEGFGAKVI-TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMIN 115 Query: 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEP------------ 1077 + + MK ++VN SRG L+D +A++ L KI G +DV E Sbjct: 116 DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEF 175 Query: 1078 -LPADHPLVQLDNCVLTPHT 1096 L+ N ++TP T Sbjct: 176 PDARLADLIARPNVLVTPKT 195 |
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587] Score = 50.2 bits (118), Expect = 2e-07 Identities = 28/139 (20%), Positives = 48/139 (34%), Gaps = 12/139 (8%) Query: 287 KTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 346 + Y+ F G + LD L ++D I + +I + + M Sbjct: 63 EGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 122 Query: 347 KPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLD 406 K +++N SRG L+D +A++ L KI G +DV E + + Sbjct: 123 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEF------- 175 Query: 407 VMIPEPLPADHPLVQLDNC 425 P L+ N Sbjct: 176 -----PDARLADLIARPNV 189 |
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Score = 74.0 bits (180), Expect = 1e-15 Identities = 39/189 (20%), Positives = 67/189 (35%), Gaps = 11/189 (5%) Query: 910 DTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGL 969 D VAE+ + L +A +R + + + G++ + L V Sbjct: 2 DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-------IPLIQGEKVAVLGLGEIG 54 Query: 970 ETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 + A +++ SR KE L+ E+ L K T L+ Sbjct: 55 TRVGKILAALGAQVRGFSRTPKEGPWR---FTNSLEEALREARAAVCALPLNKHTRGLVK 111 Query: 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI-PEPLPADHPLVQLD 1088 + +LM A+ VN R +LD++ ++ LK++ DV D L Sbjct: 112 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLP 171 Query: 1089 NCVLTPHTS 1097 N V TP + Sbjct: 172 NVVATPWVA 180 |
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Score = 44.0 bits (102), Expect = 3e-05 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 322 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381 L K T L+ + +LM A+ +N R +LD++ ++ LK++ D Sbjct: 94 RAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASD 153 Query: 382 VMI-PEPLPADHPLVQLDNC 400 V D L N Sbjct: 154 VWWGRNDFAKDAEFFSLPNV 173 |
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Score = 37.8 bits (86), Expect = 0.003 Identities = 5/26 (19%), Positives = 5/26 (19%), Gaps = 1/26 (3%) Query: 401 GGAGLDVMI-PEPLPADHPLVQLDNC 425 DV D L N Sbjct: 148 FIFASDVWWGRNDFAKDAEFFSLPNV 173 |
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Score = 37.4 bits (85), Expect = 0.004 Identities = 8/30 (26%), Positives = 17/30 (56%) Query: 655 DTVAEYNIGLAIAVSRRFQEGRKCITSGEW 684 D VAE+ + L +A +R + + + G++ Sbjct: 2 DAVAEFALALLLAPYKRIIQYGEKMKRGDY 31 |
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Score = 68.5 bits (167), Expect = 3e-14 Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 4/122 (3%) Query: 41 RLLVPESLSKL---RFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVL 97 ++L+ L + R +D+ + + ++ D IE K ALL ++K KEV+ Sbjct: 3 KILITWPLPEAAMARARESYDVIAHG-DDPKITIDEMIETAKSVDALLITLNEKCRKEVI 61 Query: 98 DRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 DR EN+K I+T+S+G DH+ LD K+RGI+VG ++ + + F Sbjct: 62 DRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFGG 121 Query: 158 RH 159 Sbjct: 122 AD 123 |
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Score = 54.6 bits (131), Expect = 2e-09 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 44/161 (27%) Query: 514 KPKLFLTRDDYSRVP--AFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDR 571 K K+ +T +P A E +D+I + I D IE + ALL T ++ Sbjct: 1 KKKILITW----PLPEAAMARARESYDVIAHGDDPK-ITIDEMIETAKSVDALLITLNEK 55 Query: 572 VDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGY 631 K+V+D + +N+K I+T+S+G+ Sbjct: 56 CRKEVID-------------------------------------RIPENIKCISTYSIGF 78 Query: 632 DHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRF 672 DH++L KARGI+VG+ H ++ + + F Sbjct: 79 DHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119 |
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Score = 40.7 bits (95), Expect = 1e-04 Identities = 18/53 (33%), Positives = 31/53 (58%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRF 927 N+K I+T+S+G+DH++L KARGI+VG+ H ++ + + F Sbjct: 67 NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119 |
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Score = 63.9 bits (155), Expect = 1e-12 Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 5/113 (4%) Query: 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGE-NL 104 + + ++ ++ + + +E KG + V ++ + Sbjct: 14 QYFKQWAKDTGNTLEYHT----EFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGI 69 Query: 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 K + +VG D++ + +K GIR+ V + V + + Sbjct: 70 KFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTK 122 |
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Score = 58.9 bits (142), Expect = 6e-11 Identities = 20/165 (12%), Positives = 45/165 (27%), Gaps = 42/165 (25%) Query: 514 KPKLFLTRDDYSRVPAFEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572 K + R D + F+ + + Y + + +E +G + Sbjct: 2 KIIAYGARVDE--IQYFKQWAKDTGNTLEY---HTEFLDENTVEWAKGFDGINSLQTTPY 56 Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632 V ++ +K +T +VG D Sbjct: 57 AAGVFEK------------------------------------MHAYGIKFLTIRNVGTD 80 Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 677 ++++ +K GIR+ +V + V + +G Sbjct: 81 NIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGET 125 |
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Score = 52.0 bits (124), Expect = 2e-08 Identities = 12/58 (20%), Positives = 25/58 (43%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRK 932 +K +T +VG D++++ +K GIR+ +V + V + +G Sbjct: 68 GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGET 125 |
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587] Score = 63.0 bits (153), Expect = 3e-12 Identities = 11/115 (9%), Positives = 34/115 (29%), Gaps = 10/115 (8%) Query: 46 ESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR-SGENL 104 + + + ++ + KG ++ E L + + Sbjct: 17 KEWEDAHKDVEVEYTDKLLTPE------TVALAKGADGVVVYQQLDYIAETLQALADNGI 70 Query: 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 ++ +VG D++ + + K G ++ V S + + + + Sbjct: 71 TKMSLRNVGVDNIDMAKAKELGFQITNVPVYS---YTTHAVRNMVVKAFDNNLEL 122 |
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587] Score = 54.9 bits (132), Expect = 2e-09 Identities = 17/179 (9%), Positives = 51/179 (28%), Gaps = 50/179 (27%) Query: 513 SKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572 +K + R+D P + + + ++ + + + +G ++ + Sbjct: 1 TKIFAYAIRED--EKPFLKEWEDAHKDVEVEYTDKLLTPET-VALAKGADGVVVYQQLDY 57 Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632 + L + ++ +VG D Sbjct: 58 IAETLQALADNG------------------------------------ITKMSLRNVGVD 81 Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ----EGRKCITSGEWALK 687 ++++ + K G ++ +V S + + + + EG+ E +K Sbjct: 82 NIDMAKAKELGFQITNVPVYS---YTTHAVRNMVVKAFDNNLELVEGK----EAETPVK 133 |
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587] Score = 44.9 bits (106), Expect = 4e-06 Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 13/103 (12%) Query: 846 ETAKLLKAFKVSKILYTSR--NKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGS 903 ET L K + + + ++ +VG D++++ + K G ++ + Sbjct: 38 ETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITN 97 Query: 904 VGHISSDTVAEYNIGLAIAVSRRFQ----EGRKCITSGEWALK 942 V S + + + + EG+ E +K Sbjct: 98 VPVYS---YTTHAVRNMVVKAFDNNLELVEGK----EAETPVK 133 |
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Score = 61.5 bits (149), Expect = 8e-12 Identities = 17/100 (17%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Query: 58 DIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHL 117 D+ T + + ++I + L L + +E L++ + L++I G D++ Sbjct: 21 DVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGFDNI 79 Query: 118 HLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 + GI P +S + +I + +R ++ Sbjct: 80 DIKSAGDLGI-AVCNVPAASVYSEQASIEMREEAAREIRR 118 |
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Score = 53.8 bits (129), Expect = 4e-09 Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 42/155 (27%) Query: 530 FEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDF 589 IL ++ + A ++I + L L + ++ L++ Sbjct: 16 MPILKDVATVAFCDAQS---TQEIHEKVLNEAVGALMYHTITLTREDLEKF--------- 63 Query: 590 FGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSV 649 K L++I G+D++++ GI V +V Sbjct: 64 -----------------------------KALRIIVRIGSGFDNIDIKSAGDLGIAVCNV 94 Query: 650 GHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW 684 +S + +I + +R + Sbjct: 95 PA-ASVYSEQASIEMREEAAREIRRAITGRIPDSL 128 |
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Score = 46.1 bits (109), Expect = 2e-06 Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 3/83 (3%) Query: 859 ILYTSRNKV--KTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYN 916 L + + ++ + L++I G+D++++ GI V +V +S + + Sbjct: 47 ALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPA-ASVYSEQAS 105 Query: 917 IGLAIAVSRRFQEGRKCITSGEW 939 I + +R + Sbjct: 106 IEMREEAAREIRRAITGRIPDSL 128 |
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773] Score = 61.3 bits (148), Expect = 1e-11 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 8/125 (6%) Query: 41 RLLVPESLSKL---RFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVL 97 +L+ + L+ + ++ RD + + ALL VD EV Sbjct: 4 VVLIADKLAPSTVAALGDQVEVRWVD----GPDRDKLLAAVPEADALLVRSATTVDAEV- 58 Query: 98 DRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQ 157 + LK++A VG D++ +D +RG+ V +S A+ G +A S R Sbjct: 59 LAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLAL 118 Query: 158 RHNWI 162 ++ Sbjct: 119 AGEFV 123 |
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773] Score = 50.5 bits (120), Expect = 5e-08 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 44/172 (25%) Query: 513 SKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRV 572 S P + + LG+ ++ RD + + ALL S V Sbjct: 1 SLPVVLIADKLAPS--TVAALGDQVEVRWVDG----PDRDKLLAAVPEADALLVRSATTV 54 Query: 573 DKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYD 632 D +VL + LK++ VG D Sbjct: 55 DAEVLAAA--------------------------------------PKLKIVARAGVGLD 76 Query: 633 HLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGEW 684 ++++ ARG+ V + +S A+ G +A S R + + Sbjct: 77 NVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN 128 |
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773] Score = 42.4 bits (99), Expect = 4e-05 Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 875 NLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCI 934 LK++ VG D++++ ARG+ V + +S A+ G +A S R + + Sbjct: 64 KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFV 123 Query: 935 TSGEW 939 Sbjct: 124 PDAVN 128 |
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Score = 54.2 bits (130), Expect = 9e-09 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 3/93 (3%) Query: 65 SEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEI 122 S+ P +F +L ++ P + E + ++ +NLK+ T +G DH+ L Sbjct: 74 SDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSA 132 Query: 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRF 155 R + V V +S T+ A Sbjct: 133 IDRNVTVAEVTYCNSTTLTAQARYAAGTREILE 165 |
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Score = 43.0 bits (101), Expect = 5e-05 Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEY--------NIGLAIAVSR 670 KNLK+ T +G DH++L R + V V + +S T+ I R Sbjct: 112 KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGR 171 Query: 671 RFQEGRKCITSGEWA 685 ++ + G A Sbjct: 172 PIRDEYLIVQGGALA 186 |
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Score = 42.6 bits (100), Expect = 7e-05 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 8/78 (10%) Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEY--------NIGLAIA 922 + +NLK+ T +G DH++L R + V V + +S T+ I Sbjct: 109 AKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFF 168 Query: 923 VSRRFQEGRKCITSGEWA 940 R ++ + G A Sbjct: 169 EGRPIRDEYLIVQGGALA 186 |
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562] Score = 47.7 bits (113), Expect = 5e-07 Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 45 PESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENL 104 ++L LR +I+ + G + + E ++ + + ++V + E L Sbjct: 15 QKALESLRAAGYTNIEFHK---GALDDEQLKESIRDAHFIGLRSRTHLTEDV-INAAEKL 70 Query: 105 KVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIAR 164 I F++G + + LD RGI V S+ E IGL +A + + N + Sbjct: 71 VAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQEN-IGLEVA-GKLIKYSDNG-ST 127 Query: 165 LSSF 168 LS+ Sbjct: 128 LSAV 131 |
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Score = 46.1 bits (109), Expect = 2e-06 Identities = 13/105 (12%), Positives = 19/105 (18%), Gaps = 33/105 (31%) Query: 619 KNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKC 678 LK I + G DHL I + V + + + R Sbjct: 49 PRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVR-------- 99 Query: 679 ITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 723 + G AK Sbjct: 100 ------------------------NLITYATGGRPRNIAKREDYI 120 |
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Score = 45.7 bits (108), Expect = 2e-06 Identities = 13/108 (12%), Positives = 20/108 (18%), Gaps = 33/108 (30%) Query: 871 KRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEG 930 + LK I + G DHL I + V + + + R Sbjct: 46 AKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVR----- 99 Query: 931 RKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAF 978 + G AK Sbjct: 100 ---------------------------NLITYATGGRPRNIAKREDYI 120 |
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Score = 39.6 bits (92), Expect = 3e-04 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 2/87 (2%) Query: 68 RMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGI 127 + + I + + ++ E L + LK I + G DHL + I Sbjct: 16 ELRKYFKIVRGGDLGNVEAALVSRITAEELAK-MPRLKFIQVVTAGLDHLPWESIPPHVT 74 Query: 128 RVGTVGPVSSDTVAEYNIGLAIAVSRR 154 G G + + + R Sbjct: 75 VAGNAGS-NGYGNERVWRQMVMEAVRN 100 |
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371] Score = 40.9 bits (95), Expect = 9e-05 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 1/98 (1%) Query: 949 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGA-QLVPLDTL 1007 P L+ IVG G++ A+LL + + + L ++ Sbjct: 5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGP 64 Query: 1008 CAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNT 1045 E+ A+ + + ++ + I N Sbjct: 65 FDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102 |
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93 | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562] Score = 35.4 bits (81), Expect = 0.004 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 17/89 (19%) Query: 830 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRNKVKTPKRTENLK------------ 877 +G V I+GLG GL A V+ + +R + Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWL 62 Query: 878 -----VITTFSVGYDHLELHEIKARGIRV 901 ++ + + H L GI + Sbjct: 63 MAADLIVASPGIALAHPSLSAAADAGIEI 91 |
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
Query | 1128 | |||
d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 100.0 | |
d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 100.0 | |
d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 100.0 | |
d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 100.0 | |
d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 100.0 | |
d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 100.0 | |
d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 100.0 | |
d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 100.0 | |
d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 100.0 | |
d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 100.0 | |
d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 100.0 | |
d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 100.0 | |
d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 100.0 | |
d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 100.0 | |
d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 100.0 | |
d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 100.0 | |
d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.93 | |
d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.9 | |
d2naca2 | 186 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.88 | |
d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.87 | |
d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.85 | |
d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.83 | |
d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.83 | |
d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.81 | |
d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.8 | |
d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.8 | |
d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 99.78 | |
d2naca2 | 186 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.75 | |
d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.71 | |
d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 99.71 | |
d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.66 | |
d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.61 | |
d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.49 | |
d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.17 | |
d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.03 | |
d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.97 | |
d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.88 | |
d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 98.79 | |
d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.7 | |
d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 98.63 | |
d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.55 | |
d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.31 | |
d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.3 | |
d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.15 | |
d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.11 | |
d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.07 | |
d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.04 | |
d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.01 | |
d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 97.97 | |
d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.97 | |
d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.87 | |
d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.86 | |
d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.75 | |
d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.65 | |
d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.63 | |
d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.48 | |
d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.32 | |
d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.3 | |
d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.12 | |
d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.11 | |
d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.05 | |
d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 97.04 | |
d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.94 | |
d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.93 | |
d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.9 | |
d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.9 | |
d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.85 | |
d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 96.71 | |
d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.65 | |
d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.63 | |
d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.39 | |
d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.25 | |
d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 96.21 | |
d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.1 | |
d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.04 | |
d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.95 | |
d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.95 | |
d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.92 | |
d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.91 | |
d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.89 | |
d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.89 | |
d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 95.8 | |
d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.76 | |
d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.71 | |
d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.71 | |
d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 95.56 | |
d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 95.53 | |
d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.53 | |
d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.51 | |
d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.5 | |
d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 95.35 | |
d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.31 | |
d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.18 | |
d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.17 | |
d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 95.02 | |
d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 94.95 | |
d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 94.91 | |
d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 94.91 | |
d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 94.85 | |
d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.79 | |
d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.76 | |
d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.71 | |
d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 94.68 | |
d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 94.67 | |
d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.64 | |
d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 94.49 | |
d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.4 | |
d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.35 | |
d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 94.34 | |
d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 94.31 | |
d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 94.3 | |
d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.25 | |
d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 94.22 | |
d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 94.21 | |
d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 94.17 | |
d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.15 | |
d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.15 | |
d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.11 | |
d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 93.99 | |
d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.97 | |
d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.91 | |
d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 93.87 | |
d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.74 | |
d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 93.68 | |
d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 93.59 | |
d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 93.45 | |
d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.32 | |
d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 93.28 | |
d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 93.21 | |
d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 93.1 | |
d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 93.04 | |
d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.81 | |
d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 92.69 | |
d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 92.59 | |
d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 92.56 | |
d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.54 | |
d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.5 | |
d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 92.44 | |
d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 92.42 | |
d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 92.39 | |
d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 92.31 | |
d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 92.26 | |
d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 92.17 | |
d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 92.12 | |
d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.12 | |
d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 92.1 | |
d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 91.96 | |
d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 91.88 | |
d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 91.88 | |
d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.7 | |
d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 91.58 | |
d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 91.22 | |
d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 91.18 | |
d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 91.14 | |
d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 90.96 | |
d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 90.92 | |
d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 90.8 | |
d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 90.64 | |
d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 90.58 | |
d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 90.54 | |
d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 90.3 | |
d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 90.03 | |
d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 89.79 | |
d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 89.59 | |
d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 89.5 | |
d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.44 | |
d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 89.4 | |
d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 89.25 | |
d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 89.1 | |
d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 89.0 | |
d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 88.92 | |
d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 88.87 | |
d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 88.7 | |
d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 88.64 | |
d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 88.42 | |
d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 88.0 | |
d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 87.99 | |
d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 87.95 | |
d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 87.9 | |
d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 87.58 | |
d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 87.58 | |
d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 87.47 | |
d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 87.44 | |
d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 87.37 | |
d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 87.15 | |
d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 87.09 | |
d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 86.94 | |
d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 86.69 | |
d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 86.63 | |
d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 86.38 | |
d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 86.28 | |
d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 86.16 | |
d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 86.01 | |
d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 85.86 | |
d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 85.83 | |
d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 85.7 | |
d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 85.67 | |
d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 85.48 | |
d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 85.45 | |
d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 85.41 | |
d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 85.26 | |
d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 85.13 | |
d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 85.1 | |
d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 84.99 | |
d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.99 | |
d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 84.98 | |
d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 84.72 | |
d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 84.56 | |
d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 84.45 | |
d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 84.4 | |
d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 84.19 | |
d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 84.13 | |
d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 83.92 | |
d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 83.82 | |
d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 83.8 | |
d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 83.72 | |
d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 83.3 | |
d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 83.18 | |
d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 83.17 | |
d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 83.07 | |
d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 82.98 | |
d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 82.97 | |
d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 82.8 | |
d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 82.43 | |
d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 82.39 | |
d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 82.32 | |
d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 82.29 | |
d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 82.24 | |
d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 82.17 | |
d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 81.99 | |
d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 81.96 | |
d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 81.94 | |
d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.92 | |
d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 81.86 | |
d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 81.84 | |
d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 81.51 | |
d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 81.49 | |
d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 81.27 | |
d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 81.23 | |
d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 81.2 | |
d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 80.95 | |
d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 80.93 | |
d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 80.84 | |
d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 80.82 | |
d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 80.77 | |
d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 80.76 | |
d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 80.65 | |
d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 80.38 | |
d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 80.12 |
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773] Probab=100.00 E-value=4.4e-47 Score=395.53 Aligned_cols=184 Identities=34% Similarity=0.542 Sum_probs=172.2 Q ss_pred ChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeC Q psy13054 908 SSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 987 (1128) Q Consensus 908 ~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~ 987 (1128) |+.|||||+++++|++.|+++++++.++++.|.+. .....++.||++||||+|+||+.+|+++++|||+|++||+ T Consensus 1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~-----~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~ 75 (184) T d1ygya1 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRS-----SFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDP 75 (184) T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGG-----GCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT T ss_pred CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcc-----ccccccccceeeeeccccchhHHHHHHhhhccceEEeecC Confidence 67899999999999999999999999999999731 2234489999999999999999999999999999999998 Q ss_pred CCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 988 RRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 988 ~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +..+......+++..+++|++++||+|++|||+|++|+||||++.|++||++++|||+|||++|||+||+++|++|+|+| T Consensus 76 ~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~ 155 (184) T d1ygya1 76 YVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRA 155 (184) T ss_dssp TSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEE T ss_pred CCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeE Confidence 87666566677888899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEeccCCCCCCCCCccccCCCeEECCCCC Q psy13054 1068 AGLDVMIPEPLPADHPLVQLDNCVLTPHTS 1097 (1128) Q Consensus 1068 aaLDV~e~EPl~~~~pL~~~pNvilTPHia 1097 (1128) ||||||++||++ ++|||++|||++|||+| T Consensus 156 a~lDV~~~EP~~-~~~l~~~~nviiTPHIG 184 (184) T d1ygya1 156 AGLDVFATEPCT-DSPLFELAQVVVTPHLG 184 (184) T ss_dssp EEESSCSSSSCS-CCGGGGCTTEEECSSCS T ss_pred EEEeCCCCCCCC-CchHhcCCCEEECCCCC Confidence 999999999997 89999999999999997 |
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Probab=100.00 E-value=1.5e-45 Score=386.14 Aligned_cols=189 Identities=31% Similarity=0.469 Sum_probs=170.4 Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHcCCCcccccc--ccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeC Q psy13054 910 DTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTH--IIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 987 (1128) Q Consensus 910 ~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~--~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~ 987 (1128) ++||||+++++|++.|++..+++.+++|.|.+.... .......+|+||||||||+|+||+.+|++|++|||+|++||+ T Consensus 1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~ 80 (193) T d1mx3a1 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP 80 (193) T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC Confidence 589999999999999999999999999999742110 011334589999999999999999999999999999999998 Q ss_pred CCCchhhhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce Q psy13054 988 RRVKEEGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 988 ~~~~~~~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ 1066 (1128) +.........++.. .++++++++||+|++|||+|++|++|||++.|++||++++|||+|||++||++||+++|++|+|+ T Consensus 81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 160 (193) T d1mx3a1 81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR 160 (193) T ss_dssp TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE T ss_pred cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce Confidence 87665544556654 48999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEEeccCCCCCC-CCCccccCCCeEECCCCCC Q psy13054 1067 GAGLDVMIPEPLP-ADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1067 gaaLDV~e~EPl~-~~~pL~~~pNvilTPHiag 1098 (1128) ||+||||++||++ .++|||++|||++|||+|| T Consensus 161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~ 193 (193) T d1mx3a1 161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 193 (193) T ss_dssp EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT T ss_pred EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc Confidence 9999999999987 5789999999999999996 |
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Probab=100.00 E-value=2.3e-45 Score=384.37 Aligned_cols=188 Identities=29% Similarity=0.396 Sum_probs=168.6 Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC Q psy13054 909 SDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 (1128) Q Consensus 909 a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~ 988 (1128) +.+||||++++||++.|++.++++.+++|.|.... .......+++|||+||||+|+||+.+|+++++|||+|++||++ T Consensus 2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~--~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 79 (191) T d1gdha1 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE--PLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 79 (191) T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--TTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSS T ss_pred CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCC--ccccccceecccceEEeecccchHHHHHHHHhhcccccccccc Confidence 46899999999999999999999999999997210 1112344899999999999999999999999999999999987 Q ss_pred CCchh--hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCce Q psy13054 989 RVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIG 1066 (1128) Q Consensus 989 ~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ 1066 (1128) ..... ....+....++++++++||+|++|||+|++|++|||++.|++||+|++|||+|||++|||+||+++|++|+|+ T Consensus 80 ~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~ 159 (191) T d1gdha1 80 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA 159 (191) T ss_dssp CCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE T ss_pred ccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCce Confidence 66544 2233445679999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEEeccCCCCCCCCCccccCCCeEECCCCCCC Q psy13054 1067 GAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSA 1099 (1128) Q Consensus 1067 gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~ 1099 (1128) ||+||||++|| +.++|||++|||++|||+|++ T Consensus 160 ~a~lDV~~~EP-~~~~~l~~~~nvi~TPHiasa 191 (191) T d1gdha1 160 YAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA 191 (191) T ss_dssp EEEESCCTTTT-SCCTTGGGCTTEEECSSCTTC T ss_pred EEEEECCCCCC-CCCchHHcCCCEEECCccccC Confidence 99999999999 568999999999999999974 |
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Probab=100.00 E-value=2.3e-44 Score=376.35 Aligned_cols=186 Identities=27% Similarity=0.459 Sum_probs=168.6 Q ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 910 DTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 910 ~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) .+||||+++++|++.|++..+++.+++|+|.... ......++.|+++||||+|+||+++|++|++|||+|.+||+.. T Consensus 1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~---~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188) T d2naca1 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD---CVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR 77 (188) T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH---HHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcc---cCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecc Confidence 3899999999999999999999999999997311 1123348999999999999999999999999999999999776 Q ss_pred Cchh-hhhcCC-cccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 990 VKEE-GTALGA-QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 990 ~~~~-~~~~g~-~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) .... ....++ ...++++++++||+|++|||+|++|++|||++.|+.||+|++|||+|||++||++||+++|++|++.| T Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~g 157 (188) T d2naca1 78 LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAG 157 (188) T ss_dssp CCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEE T ss_pred ccccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCcee Confidence 5444 334444 44689999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEeccCCCCCCCCCccccCCCeEECCCCCC Q psy13054 1068 AGLDVMIPEPLPADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1068 aaLDV~e~EPl~~~~pL~~~pNvilTPHiag 1098 (1128) |+||||++||++.++|||.+||+++|||+|| T Consensus 158 a~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG 188 (188) T d2naca1 158 YAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 188 (188) T ss_dssp EEESCCSSSSCCTTCGGGTSTTBCCCCSCTT T ss_pred EEEeCCCCCCCCCCChHHcCCCeEEccccCc Confidence 9999999999999999999999999999997 |
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Probab=100.00 E-value=6e-45 Score=383.79 Aligned_cols=185 Identities=28% Similarity=0.411 Sum_probs=167.0 Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC Q psy13054 909 SDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 (1128) Q Consensus 909 a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~ 988 (1128) +++||||+++++|++.|++..+++.+++|.|.+.. .....+|.||||||||+|+||+.+|++|++|||+|++||++ T Consensus 2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~----~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~ 77 (199) T d1dxya1 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG----TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPY 77 (199) T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHT----CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS T ss_pred ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCccc----CcccccccceeeeeeecccccccccccccccceeeeccCCc Confidence 57999999999999999999999999999997311 12344899999999999999999999999999999999987 Q ss_pred CCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 989 RVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 989 ~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ..... .......++++++++||+|++|||+|++|+++||++.|++||++++|||+|||++||++||+++|++|+|.|| T Consensus 78 ~~~~~--~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga 155 (199) T d1dxya1 78 PMKGD--HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGV 155 (199) T ss_dssp CCSSC--CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEE T ss_pred cchhh--hcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceE Confidence 65432 2345667999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEeccCCCCCC-------------CCCccccCCCeEECCCCCCC Q psy13054 1069 GLDVMIPEPLP-------------ADHPLVQLDNCVLTPHTSSA 1099 (1128) Q Consensus 1069 aLDV~e~EPl~-------------~~~pL~~~pNvilTPHiag~ 1099 (1128) +||||++||++ ..+|||.+|||++|||+||| T Consensus 156 ~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy 199 (199) T d1dxya1 156 GIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 199 (199) T ss_dssp EESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC T ss_pred eccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC Confidence 99999999962 23578889999999999997 |
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=8.3e-44 Score=372.11 Aligned_cols=184 Identities=30% Similarity=0.472 Sum_probs=160.1 Q ss_pred ChhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeC Q psy13054 908 SSDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 987 (1128) Q Consensus 908 ~a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~ 987 (1128) |++|||||+++++|++.|+++.+++.+++|.|.+ ......++.|++|||||+|+||+.+|+++++|||+|++||+ T Consensus 1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~-----~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~ 75 (188) T d1sc6a1 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNK-----LAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDI 75 (188) T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC----------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS T ss_pred CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcc-----cccccccccceEEEEeecccchhhhhhhcccccceEeeccc Confidence 7899999999999999999999999999999983 22334489999999999999999999999999999999997 Q ss_pred CCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 988 RRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 988 ~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) +..... .......+++|++++||||++|||+|++|+++||++.|++||++++|||+|||++||++||+++|++|++.+ T Consensus 76 ~~~~~~--~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~ 153 (188) T d1sc6a1 76 ENKLPL--GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAG 153 (188) T ss_dssp SCCCCC--TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEE T ss_pred cccchh--hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceE Confidence 654432 222344689999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEeccCCCCC----CCCCccccCCCeEECCCCCC Q psy13054 1068 AGLDVMIPEPL----PADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1068 aaLDV~e~EPl----~~~~pL~~~pNvilTPHiag 1098 (1128) |+||||++||+ |.++|||++|||++|||+|| T Consensus 154 a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG 188 (188) T d1sc6a1 154 AAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG 188 (188) T ss_dssp EEEEC---------CTTTGGGTTCTTEEEECCCSC T ss_pred EEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc Confidence 99999999998 45679999999999999997 |
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587] Probab=100.00 E-value=4.8e-44 Score=375.72 Aligned_cols=184 Identities=24% Similarity=0.286 Sum_probs=166.0 Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC Q psy13054 909 SDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 (1128) Q Consensus 909 a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~ 988 (1128) .++||||+++++|++.|++..+++.+++|.|.+. .....+|+||||||||+|+||+.+|++|++|||+|++||+. T Consensus 1 p~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~-----~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~ 75 (197) T d1j4aa1 1 PNAIAEHAAIQAARILRQDKAMDEKVARHDLRWA-----PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIF 75 (197) T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCT-----TCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS T ss_pred CCHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcC-----CCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcc Confidence 3689999999999999999999999999988621 12345899999999999999999999999999999999877 Q ss_pred CCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 989 RVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 989 ~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) .... ....++...++++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+|| T Consensus 76 ~~~~-~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a 154 (197) T d1j4aa1 76 RNPE-LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGY 154 (197) T ss_dssp CCHH-HHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE T ss_pred cccc-cccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchhe Confidence 5533 333456677999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEeccCCCC-------------CCCCCccccCCCeEECCCCCC Q psy13054 1069 GLDVMIPEP-------------LPADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1069 aLDV~e~EP-------------l~~~~pL~~~pNvilTPHiag 1098 (1128) +||||++|| ++.++|||.+|||++|||+|+ T Consensus 155 ~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~ 197 (197) T d1j4aa1 155 AMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF 197 (197) T ss_dssp EESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT T ss_pred eeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc Confidence 999999995 445578999999999999986 |
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Probab=100.00 E-value=2.2e-43 Score=366.29 Aligned_cols=180 Identities=24% Similarity=0.345 Sum_probs=164.1 Q ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHcCCCccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC Q psy13054 909 SDTVAEYNIGLAIAVSRRFQEGRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 (1128) Q Consensus 909 a~sVAE~alaliL~~~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~ 988 (1128) |++||||+++++|++.|++..+++.+++|+|.+ .....++.||||||||+|+||+.+|+++++|||+|++||+. T Consensus 1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~------~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~ 74 (181) T d1qp8a1 1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGR------DVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRT 74 (181) T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC------CSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSS T ss_pred CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC------CCCCCcccCceEEEeccccccccceeeeecccccccccccc Confidence 679999999999999999999999999999973 12233699999999999999999999999999999999876 Q ss_pred CCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 989 RVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 989 ~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ..+.. .....+++|++++||+|++|||+|++|+++||++.|++||++++|||+|||++||++||+++|++|++.+| T Consensus 75 ~~~~~----~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~a 150 (181) T d1qp8a1 75 PKEGP----WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIF 150 (181) T ss_dssp CCCSS----SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEE T ss_pred ccccc----eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEE Confidence 54322 12235899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEeccCC-CCCCCCCccccCCCeEECCCCCC Q psy13054 1069 GLDVMIP-EPLPADHPLVQLDNCVLTPHTSS 1098 (1128) Q Consensus 1069 aLDV~e~-EPl~~~~pL~~~pNvilTPHiag 1098 (1128) ++|||++ ||++.++||+.+|||++|||+|| T Consensus 151 alDV~~~e~p~~~~~~l~~~~nvi~TPHiaG 181 (181) T d1qp8a1 151 ASDVWWGRNDFAKDAEFFSLPNVVATPWVAG 181 (181) T ss_dssp EESCCTTTTCCGGGHHHHTSTTEEECCSCSS T ss_pred EEecCCCCCCCCCCChHHcCCCEEeccccCc Confidence 9999975 56788999999999999999997 |
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773] Probab=100.00 E-value=1.4e-41 Score=353.71 Aligned_cols=183 Identities=26% Similarity=0.409 Sum_probs=154.5 Q ss_pred CchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeee Q psy13054 136 SSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLIS 215 (1128) Q Consensus 136 ~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiG 215 (1128) |++|||||++++||++.|+++.+++.++++ .|... .+.+..+.+|++||+| T Consensus 1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~-------------~W~~~----------------~~~~~~l~~k~vgiiG 51 (184) T d1ygya1 1 NIHSAAEHALALLLAASRQIPAADASLREH-------------TWKRS----------------SFSGTEIFGKTVGVVG 51 (184) T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-------------CCCGG----------------GCCBCCCTTCEEEEEC T ss_pred CchHHHHHHHHHHHHHHcCHHHHHHHHHhC-------------CCCcc----------------ccccccccceeeeecc Confidence 678999999999999999999988876542 33211 1223345678999999 Q ss_pred ccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeec Q psy13054 216 LKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFG 295 (1128) Q Consensus 216 lg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g 295 (1128) +|. ||+++++++++|++ ++++ T Consensus 52 ~G~---------------------------------IG~~va~~~~~fg~--------------------------~v~~ 72 (184) T d1ygya1 52 LGR---------------------------------IGQLVAQRIAAFGA--------------------------YVVA 72 (184) T ss_dssp CSH---------------------------------HHHHHHHHHHTTTC--------------------------EEEE T ss_pred ccc---------------------------------hhHHHHHHhhhccc--------------------------eEEe Confidence 873 67888888887754 3445 Q ss_pred ccccccc-cccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCC Q psy13054 296 YNWFERS-NGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKK 374 (1128) Q Consensus 296 ~~~~~~~-~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~ 374 (1128) |+++..+ .....++++++++|++++|||||+|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+ T Consensus 73 ~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~ 152 (184) T d1ygya1 73 YDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGH 152 (184) T ss_dssp ECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSS T ss_pred ecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCc Confidence 5544332 344567788999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCC Q psy13054 375 IGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPL 413 (1128) Q Consensus 375 IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~ 413 (1128) |+|||||||++||++ ++|||++||| ++|||+| T Consensus 153 i~~a~lDV~~~EP~~-~~~l~~~~nv------iiTPHIG 184 (184) T d1ygya1 153 VRAAGLDVFATEPCT-DSPLFELAQV------VVTPHLG 184 (184) T ss_dssp EEEEEESSCSSSSCS-CCGGGGCTTE------EECSSCS T ss_pred EeEEEEeCCCCCCCC-CchHhcCCCE------EECCCCC Confidence 999999999999986 8999999999 9999986 |
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Probab=100.00 E-value=2.9e-40 Score=345.50 Aligned_cols=187 Identities=21% Similarity=0.288 Sum_probs=153.6 Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeec Q psy13054 137 SDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISL 216 (1128) Q Consensus 137 ~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGl 216 (1128) +.||||++++|||+++|++.++++.++++ .| ..|.. ....+....+|++||+|+ T Consensus 2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g-~w---------~~~~~----------------~~~~~~~l~g~tvgIiG~ 55 (191) T d1gdha1 2 TVATAEIAMLLLLGSARRAGEGEKMIRTR-SW---------PGWEP----------------LELVGEKLDNKTLGIYGF 55 (191) T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTT-CC---------CCCCT----------------TTTCBCCCTTCEEEEECC T ss_pred CHHHHHHHHHHHHHHHhCHHHHHHHHHcC-CC---------CcCCc----------------cccccceecccceEEeec Confidence 57999999999999999999999887753 33 11211 122344566799999999 Q ss_pred cccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecc Q psy13054 217 KDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGY 296 (1128) Q Consensus 217 g~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~ 296 (1128) |+ ||+++++++.+|++. +++| T Consensus 56 G~---------------------------------IG~~va~~l~~fg~~--------------------------v~~~ 76 (191) T d1gdha1 56 GS---------------------------------IGQALAKRAQGFDMD--------------------------IDYF 76 (191) T ss_dssp SH---------------------------------HHHHHHHHHHTTTCE--------------------------EEEE T ss_pred cc---------------------------------chHHHHHHHHhhccc--------------------------cccc Confidence 73 688889998887654 2334 Q ss_pred cccccc--c-ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcC Q psy13054 297 NWFERS--N-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDK 373 (1128) Q Consensus 297 ~~~~~~--~-~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG 373 (1128) +++... . ....+..+.+|++++++||+|++|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++| T Consensus 77 d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g 156 (191) T d1gdha1 77 DTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG 156 (191) T ss_dssp CSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT T ss_pred cccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcC Confidence 432221 1 2223445679999999999999999999999999999999999999999999999999999999999999 Q ss_pred CeeEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCCC Q psy13054 374 KIGGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLPA 415 (1128) Q Consensus 374 ~IagAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~~ 415 (1128) +|+||+||||++|| +.++|||++||| ++|||++++ T Consensus 157 ~i~~a~lDV~~~EP-~~~~~l~~~~nv------i~TPHiasa 191 (191) T d1gdha1 157 RLAYAGFDVFAGEP-NINEGYYDLPNT------FLFPHIGSA 191 (191) T ss_dssp SEEEEEESCCTTTT-SCCTTGGGCTTE------EECSSCTTC T ss_pred CceEEEEECCCCCC-CCCchHHcCCCE------EECCccccC Confidence 99999999999999 678999999999 999999985 |
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Probab=100.00 E-value=2.6e-39 Score=338.70 Aligned_cols=190 Identities=25% Similarity=0.328 Sum_probs=152.9 Q ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeecc Q psy13054 138 DTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLK 217 (1128) Q Consensus 138 ~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg 217 (1128) ++|||+++++||+++|+++..++.++++ .|...... . +.....+.++.||++||+|+| T Consensus 1 e~VAE~ai~liL~l~R~i~~~~~~~~~g-~w~~~~~~------------~---------~~~~~~~~eL~gktvgIiG~G 58 (193) T d1mx3a1 1 EETADSTLCHILNLYRRATWLHQALREG-TRVQSVEQ------------I---------REVASGAARIRGETLGIIGLG 58 (193) T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTT-CCCCSHHH------------H---------HHHTTTCCCCTTCEEEEECCS T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHcC-Cccccccc------------c---------cccccCceeeeCceEEEeccc Confidence 6899999999999999999998877764 33210000 0 000122345678899999997 Q ss_pred ccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeeccc Q psy13054 218 DQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYN 297 (1128) Q Consensus 218 ~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~ 297 (1128) + ||+++++++++|++. +++|+ T Consensus 59 ~---------------------------------IG~~va~~l~~fg~~--------------------------v~~~d 79 (193) T d1mx3a1 59 R---------------------------------VGQAVALRAKAFGFN--------------------------VLFYD 79 (193) T ss_dssp H---------------------------------HHHHHHHHHHTTTCE--------------------------EEEEC T ss_pred c---------------------------------ccccceeeeeccccc--------------------------eeecc Confidence 3 688889998887653 34455 Q ss_pred cccccc-ccccCCcc-cCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 298 WFERSN-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 298 ~~~~~~-~~~~g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) ++.... ....++.+ .+|+|++++||+||+|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+| T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i 159 (193) T d1mx3a1 80 PYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRI 159 (193) T ss_dssp TTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSE T ss_pred CcccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCc Confidence 443222 23345544 4899999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEEEEecCCCCCCC-CCCCcccCCCCCCCCcccccccCCC Q psy13054 376 GGAGLDVMIPEPLP-ADHPLVQLDNCGGAGLDVMIPEPLP 414 (1128) Q Consensus 376 agAaLDVfe~EPl~-~~~pL~~lpNvg~~~~~v~tph~~~ 414 (1128) +||+||||++||++ .++||+++||| ++|||++. T Consensus 160 ~~a~lDV~~~EP~~~~~~~l~~~~nv------i~TPHiA~ 193 (193) T d1mx3a1 160 RGAALDVHESEPFSFSQGPLKDAPNL------ICTPHAAW 193 (193) T ss_dssp EEEEESCCSSSSCCTTSSTTTTCSSE------EECSSCTT T ss_pred eEEEEEcCCCCCCCCCchhHHcCCCE------EEcCCcCc Confidence 99999999999987 57899999999 99999974 |
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Probab=100.00 E-value=3e-39 Score=340.11 Aligned_cols=186 Identities=22% Similarity=0.282 Sum_probs=153.4 Q ss_pred CchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeee Q psy13054 136 SSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLIS 215 (1128) Q Consensus 136 ~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiG 215 (1128) +++|||||++++||++.|+++.+++.++++ +|... ..+.+..+.+|++||+| T Consensus 1 Sp~aVAE~~l~~iL~l~R~~~~~~~~~~~g-~w~~~---------------------------~~~~~~~l~~ktvgIiG 52 (199) T d1dxya1 1 SPAAIAEFALTDTLYLLRNMGKVQAQLQAG-DYEKA---------------------------GTFIGKELGQQTVGVMG 52 (199) T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHTT-CHHHH---------------------------TCCCCCCGGGSEEEEEC T ss_pred CChHHHHHHHHHHHHHHhCHHHHHHHHHhC-CCCcc---------------------------cCcccccccceeeeeee Confidence 468999999999999999999998877653 45310 01123345678999999 Q ss_pred ccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeec Q psy13054 216 LKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFG 295 (1128) Q Consensus 216 lg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g 295 (1128) +|+ ||+++++++++|++. +++ T Consensus 53 ~G~---------------------------------IG~~va~~l~~fg~~--------------------------v~~ 73 (199) T d1dxya1 53 TGH---------------------------------IGQVAIKLFKGFGAK--------------------------VIA 73 (199) T ss_dssp CSH---------------------------------HHHHHHHHHHHTTCE--------------------------EEE T ss_pred ccc---------------------------------cccccccccccccee--------------------------eec Confidence 973 688899999887653 445 Q ss_pred ccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 296 YNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 296 ~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) |+++.... ....+++++|++++++||+|++|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+| T Consensus 74 ~d~~~~~~-~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i 152 (199) T d1dxya1 74 YDPYPMKG-DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 152 (199) T ss_dssp ECSSCCSS-CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSE T ss_pred cCCccchh-hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCc Confidence 55443322 22346778999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEEEEecCCCCCCC-------------CCCCcccCCCCCCCCcccccccCCCC Q psy13054 376 GGAGLDVMIPEPLP-------------ADHPLVQLDNCGGAGLDVMIPEPLPA 415 (1128) Q Consensus 376 agAaLDVfe~EPl~-------------~~~pL~~lpNvg~~~~~v~tph~~~~ 415 (1128) +||+||||++||++ ..+||+.+||| ++|||++++ T Consensus 153 ~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nv------iiTPHiagy 199 (199) T d1dxya1 153 AGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNV------VLSPHIAYY 199 (199) T ss_dssp EEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTE------EECSSCTTC T ss_pred ceEeccccCCCCcchhhccccccccChhhHHHhcCCCE------EECCccccC Confidence 99999999999962 23578899999 999999875 |
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Probab=100.00 E-value=2.6e-38 Score=330.26 Aligned_cols=184 Identities=20% Similarity=0.295 Sum_probs=149.2 Q ss_pred hHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeeccc Q psy13054 139 TVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISLKD 218 (1128) Q Consensus 139 aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGlg~ 218 (1128) |||||+++++|+++|+++.++++++++ .|...... ..+..+.++++||+|+|. T Consensus 2 sVAE~~l~~iL~~~R~~~~~~~~~~~g-~w~~~~~~--------------------------~~~~~l~~~~vgiiG~G~ 54 (188) T d2naca1 2 SVAEHVVMMILSLVRNYLPSHEWARKG-GWNIADCV--------------------------SHAYDLEAMHVGTVAAGR 54 (188) T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHTT-CCCHHHHH--------------------------TTCCCCTTCEEEEECCSH T ss_pred cHHHHHHHHHHHHHhCHHHHHHHHHhC-CCCCcccC--------------------------Ccceeccccceeeccccc Confidence 899999999999999999988877653 33210000 012234568899998873 Q ss_pred cccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccc Q psy13054 219 QKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNW 298 (1128) Q Consensus 219 ~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~ 298 (1128) ||+++++++++|++.+ .++++ T Consensus 55 ---------------------------------IG~~va~~l~~fg~~v--------------------------~~~d~ 75 (188) T d2naca1 55 ---------------------------------IGLAVLRRLAPFDVHL--------------------------HYTDR 75 (188) T ss_dssp ---------------------------------HHHHHHHHHGGGTCEE--------------------------EEECS T ss_pred ---------------------------------cchhhhhhhhccCceE--------------------------EEEee Confidence 6788899988876542 33332 Q ss_pred cccc--cccccCC-cccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 299 FERS--NGTALGA-QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 299 ~~~~--~~~~~g~-~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) .... .....++ ...+|+|++++||+||+|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+| T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i 155 (188) T d2naca1 76 HRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRL 155 (188) T ss_dssp SCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSE T ss_pred ccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCc Confidence 2211 1222233 456899999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEEEEecCCCCCCCCCCCcccCCCCCCCCcccccccCCC Q psy13054 376 GGAGLDVMIPEPLPADHPLVQLDNCGGAGLDVMIPEPLP 414 (1128) Q Consensus 376 agAaLDVfe~EPl~~~~pL~~lpNvg~~~~~v~tph~~~ 414 (1128) +||+||||++||++.++||+++||+ ++|||+++ T Consensus 156 ~ga~lDV~~~EP~~~~~~l~~~~nv------~~TPHiaG 188 (188) T d2naca1 156 AGYAGDVWFPQPAPKDHPWRTMPYN------GMTPHISG 188 (188) T ss_dssp EEEEESCCSSSSCCTTCGGGTSTTB------CCCCSCTT T ss_pred eeEEEeCCCCCCCCCCChHHcCCCe------EEccccCc Confidence 9999999999999999999999999 99999985 |
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587] Probab=100.00 E-value=1.1e-38 Score=334.76 Aligned_cols=184 Identities=19% Similarity=0.235 Sum_probs=151.4 Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeec Q psy13054 137 SDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISL 216 (1128) Q Consensus 137 ~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGl 216 (1128) ++|||||++++||++.|++...++.++++ +| .|.. ..|+++.||++||+|+ T Consensus 1 p~aVAE~~l~~~l~l~r~~~~~~~~~~~~-~~----------~w~~------------------~~g~el~gk~vgIiG~ 51 (197) T d1j4aa1 1 PNAIAEHAAIQAARILRQDKAMDEKVARH-DL----------RWAP------------------TIGREVRDQVVGVVGT 51 (197) T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHTT-BC----------CCTT------------------CCBCCGGGSEEEEECC T ss_pred CCHHHHHHHHHHHHHHhCcHHHHHHHHhC-CC----------CcCC------------------CcCccccCCeEEEecc Confidence 47999999999999999999988766543 22 2321 1234466789999999 Q ss_pred cccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecc Q psy13054 217 KDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGY 296 (1128) Q Consensus 217 g~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~ 296 (1128) |+ ||+++++++++|++. +++| T Consensus 52 G~---------------------------------IG~~va~~l~~fg~~--------------------------V~~~ 72 (197) T d1j4aa1 52 GH---------------------------------IGQVFMQIMEGFGAK--------------------------VITY 72 (197) T ss_dssp SH---------------------------------HHHHHHHHHHHTTCE--------------------------EEEE T ss_pred cc---------------------------------cchhHHHhHhhhccc--------------------------cccc Confidence 73 688899999887653 3445 Q ss_pred cccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 297 NWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 297 ~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) +++.+......++...+|++++++||||++|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+ T Consensus 73 d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 152 (197) T d1j4aa1 73 DIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 152 (197) T ss_dssp CSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE T ss_pred CcccccccccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccch Confidence 54433333334566779999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEEecCCCCC-------------CCCCCCcccCCCCCCCCcccccccCCC Q psy13054 377 GAGLDVMIPEP-------------LPADHPLVQLDNCGGAGLDVMIPEPLP 414 (1128) Q Consensus 377 gAaLDVfe~EP-------------l~~~~pL~~lpNvg~~~~~v~tph~~~ 414 (1128) ||+||||++|| ++.++||+.+||| ++|||+|. T Consensus 153 ~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nv------iiTPHiA~ 197 (197) T d1j4aa1 153 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNV------LVTPKTAF 197 (197) T ss_dssp EEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTE------EECSSCTT T ss_pred heeeeccccCCcccccccccccCCccchhhhhcCCCE------EeCcccCc Confidence 99999999995 3345678999999 99999973 |
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562] Probab=100.00 E-value=6.8e-38 Score=327.06 Aligned_cols=184 Identities=25% Similarity=0.339 Sum_probs=142.8 Q ss_pred CchhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeee Q psy13054 136 SSDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLIS 215 (1128) Q Consensus 136 ~~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiG 215 (1128) |++|||||++++||++.|+++..+..++++ .|... ...+.++.++++||+| T Consensus 1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~-------------~w~~~----------------~~~~~~l~~~~vgiiG 51 (188) T d1sc6a1 1 NTRSVAELVIGELLLLLRGVPEANAKAHRG-------------VGNKL----------------AAGSFEARGKKLGIIG 51 (188) T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHHHHHT-------------CCC---------------------CCCSTTCEEEEEC T ss_pred CCHHHHHHHHHHHHHHHhChHHHHHHHHhC-------------CCccc----------------ccccccccceEEEEee Confidence 689999999999999999999988876553 22210 0011234568889998 Q ss_pred ccccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeec Q psy13054 216 LKDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFG 295 (1128) Q Consensus 216 lg~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g 295 (1128) +|. ||+++++++.+|++. +++ T Consensus 52 ~G~---------------------------------IG~~va~~l~~fg~~--------------------------v~~ 72 (188) T d1sc6a1 52 YGH---------------------------------IGTQLGILAESLGMY--------------------------VYF 72 (188) T ss_dssp CSH---------------------------------HHHHHHHHHHHTTCE--------------------------EEE T ss_pred ccc---------------------------------chhhhhhhcccccce--------------------------Eee Confidence 873 678888888887654 334 Q ss_pred ccccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCe Q psy13054 296 YNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKI 375 (1128) Q Consensus 296 ~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~I 375 (1128) |++..... ......+.+|+|++++||||++|||+|++|+||||++.|++||++++|||+|||++|||+||++||++|++ T Consensus 73 ~d~~~~~~-~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~ 151 (188) T d1sc6a1 73 YDIENKLP-LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHL 151 (188) T ss_dssp ECSSCCCC-CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSE T ss_pred ccccccch-hhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCc Confidence 44332221 11223456899999999999999999999999999999999999999999999999999999999999999 Q ss_pred eEEEEecCCCCCC----CCCCCcccCCCCCCCCcccccccCCC Q psy13054 376 GGAGLDVMIPEPL----PADHPLVQLDNCGGAGLDVMIPEPLP 414 (1128) Q Consensus 376 agAaLDVfe~EPl----~~~~pL~~lpNvg~~~~~v~tph~~~ 414 (1128) +||+||||++||+ |..+||+++||| ++|||+++ T Consensus 152 ~~a~lDV~~~EP~~~~~~~~~~l~~~~nv------~~TPHiaG 188 (188) T d1sc6a1 152 AGAAIDVFPTEPATNSDPFTSPLAEFDNV------LLTPHIGG 188 (188) T ss_dssp EEEEEEC---------CTTTGGGTTCTTE------EEECCCSC T ss_pred eEEEEecCCCCCCCcCCccchhHhcCCCE------EEcCCcCc Confidence 9999999999998 445689999999 99999986 |
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Probab=100.00 E-value=3.7e-37 Score=319.26 Aligned_cols=180 Identities=19% Similarity=0.233 Sum_probs=146.7 Q ss_pred chhHHHHHHHHHHHHhhchHHHHHHHHhhhhhHHHHhhccCCCCcccccccccceEeecCccccccccccccceeeeeec Q psy13054 137 SDTVAEYNIGLAIAVSRRFQQRHNWIARLSSFAEIQTRALDTKFPAKQQNLHNVKVRLFPRKNEICQKYSTHKAYLLISL 216 (1128) Q Consensus 137 ~~aVAE~alalmL~l~R~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~kt~giiGl 216 (1128) +++||||++++||+++|++..+++.++++ .|.... ....+.||++||+|+ T Consensus 1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~-------------~w~~~~-----------------~~~~l~gk~vgIiG~ 50 (181) T d1qp8a1 1 ADAVAEFALALLLAPYKRIIQYGEKMKRG-------------DYGRDV-----------------EIPLIQGEKVAVLGL 50 (181) T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTT-------------CCCCCS-----------------CCCCCTTCEEEEESC T ss_pred CchHHHHHHHHHHHHHhCHHHHHHHHHcC-------------CCCCCC-----------------CCCcccCceEEEecc Confidence 57999999999999999999988877653 232110 001245688999998 Q ss_pred cccccCCCCCcccccCCccccccccccccccccchhhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecc Q psy13054 217 KDQKKNGSQNPKWRMGSKTDTNHYFKAFENSTGAFLSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGY 296 (1128) Q Consensus 217 g~~~~~g~~~~~w~ig~~t~~~~~~~~fg~~~g~~ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~ 296 (1128) |. ||+.+++++++|++. +++| T Consensus 51 G~---------------------------------IG~~va~~l~~~g~~--------------------------v~~~ 71 (181) T d1qp8a1 51 GE---------------------------------IGTRVGKILAALGAQ--------------------------VRGF 71 (181) T ss_dssp ST---------------------------------HHHHHHHHHHHTTCE--------------------------EEEE T ss_pred cc---------------------------------ccccceeeeeccccc--------------------------cccc Confidence 73 678888888877653 3344 Q ss_pred cccccccccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 297 NWFERSNGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 297 ~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) +++.++.. ...+.+|+|++++||||++|||+|++|+||||++.|++||+|++|||+|||++|||+||++||++|+|+ T Consensus 72 d~~~~~~~---~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181) T d1qp8a1 72 SRTPKEGP---WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181) T ss_dssp CSSCCCSS---SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC T ss_pred cccccccc---eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEE Confidence 43332211 123458999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEEecCCCC-CCCCCCCcccCCCCCCCCcccccccCCC Q psy13054 377 GAGLDVMIPE-PLPADHPLVQLDNCGGAGLDVMIPEPLP 414 (1128) Q Consensus 377 gAaLDVfe~E-Pl~~~~pL~~lpNvg~~~~~v~tph~~~ 414 (1128) +|++|||++| |++.++||+++||| ++|||+++ T Consensus 149 ~aalDV~~~e~p~~~~~~l~~~~nv------i~TPHiaG 181 (181) T d1qp8a1 149 IFASDVWWGRNDFAKDAEFFSLPNV------VATPWVAG 181 (181) T ss_dssp EEEESCCTTTTCCGGGHHHHTSTTE------EECCSCSS T ss_pred EEEEecCCCCCCCCCCChHHcCCCE------EeccccCc Confidence 9999999765 56789999999999 99999985 |
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773] Probab=99.93 E-value=4.1e-26 Score=223.60 Aligned_cols=129 Identities=22% Similarity=0.305 Sum_probs=118.8 Q ss_pred CCCeEEEeccCCCCchHHHHhcccccEEEeCCCCCCCCHHHHHHHhcCcceeeeccccccchhhhhccCCceecccccCC Q psy13054 513 SKPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGL 592 (1128) Q Consensus 513 ~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (1128) |.||||++.+..+ .+++.|++.|++...+. .++|++++.+.+||++++++.+++|+++|+.+ T Consensus 1 sMpkvli~~~~~~--~~~~~L~~~~~v~~~~~----~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~------------ 62 (130) T d1ygya2 1 SLPVVLIADKLAP--STVAALGDQVEVRWVDG----PDRDKLLAAVPEADALLVRSATTVDAEVLAAA------------ 62 (130) T ss_dssp CCCEEEECSSCCG--GGGTTSCSSSEEEECCT----TSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC------------ T ss_pred CCCEEEEECCCCH--HHHHHHhCCcEEEECCC----CCHHHHHHHcCCCEEEEEcCcccchHHHHhhc------------ Confidence 5699999953322 48999999999876643 57899999999999999999999999999998 Q ss_pred CccccccCCCCCceeeeecccccccCCCeEEEEEcccccCccchHHHHHcCCeEEecCCCchHhHHHHHHHHHHHHHHhh Q psy13054 593 DLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRF 672 (1128) Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~i 672 (1128) |+||+|+++|+||||||+++|+++||.|+|+||+++++||||+++|||+++||+ T Consensus 63 --------------------------p~Lk~I~~~g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i 116 (130) T d1ygya2 63 --------------------------PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRL 116 (130) T ss_dssp --------------------------TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHH T ss_pred --------------------------ccceEEeeecccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhH Confidence 899999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhhcCccc Q psy13054 673 QEGRKCITSGEWA 685 (1128) Q Consensus 673 ~~~~~~~r~G~W~ 685 (1128) ..+++++|+|.|. T Consensus 117 ~~a~~~vr~g~~~ 129 (130) T d1ygya2 117 ALAGEFVPDAVNV 129 (130) T ss_dssp HHTTCCCTTBCSC T ss_pred HHHhhhcccCccC Confidence 9999999999984 |
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773] Probab=99.90 E-value=4.4e-24 Score=209.02 Aligned_cols=124 Identities=24% Similarity=0.351 Sum_probs=111.9 Q ss_pred ccEEEEEeeccccccccccccccccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHh Q psy13054 19 IEKLLLIVQNSHGISSFSRQGSRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLD 98 (1128) Q Consensus 19 ~~~ll~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~ 98 (1128) |||+|++. .+.|+.++.|+ +.|++.+.+. .+.+|+++.++++|+++++..+++++++|+ T Consensus 2 Mpkvli~~---------------~~~~~~~~~L~--~~~~v~~~~~----~~~~el~~~~~~~d~ii~~~~~~i~~~~l~ 60 (130) T d1ygya2 2 LPVVLIAD---------------KLAPSTVAALG--DQVEVRWVDG----PDRDKLLAAVPEADALLVRSATTVDAEVLA 60 (130) T ss_dssp CCEEEECS---------------SCCGGGGTTSC--SSSEEEECCT----TSHHHHHHHGGGCSEEEECSSSCBCHHHHH T ss_pred CCEEEEEC---------------CCCHHHHHHHh--CCcEEEECCC----CCHHHHHHHcCCCEEEEEcCcccchHHHHh Confidence 78999877 57778888776 6799998764 468899999999999999877899999999 Q ss_pred ccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHHHHHHh Q psy13054 99 RSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRHNWIAR 164 (1128) Q Consensus 99 ~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~~~~~~ 164 (1128) ++ |+||+|+++|+||||||+++|+++||.|+|+|++++++||||+++|||+++||+..+++|+|+ T Consensus 61 ~~-p~Lk~I~~~g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~ 125 (130) T d1ygya2 61 AA-PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPD 125 (130) T ss_dssp TC-TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTT T ss_pred hc-ccceEEeeecccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhccc Confidence 86 899999999999999999999999999999999999999999999999999999988776554 |
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Probab=99.88 E-value=3e-24 Score=217.86 Aligned_cols=124 Identities=23% Similarity=0.233 Sum_probs=119.0 Q ss_pred HhcCcceeeeccccccchhhhhccCCceecccccCCCccccccCCCCCceeeeeccccccc-------CCCeEEEEEccc Q psy13054 557 KLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDLDQMFRNPSKRHVNIETVLGVSFL-------IKNLKVITTFSV 629 (1128) Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~p~Lk~I~~~g~ 629 (1128) .|.||.+..++.|++++++ +|++++++|+++++ ++++++++||+++|++||++.++ +||||+|+++|+ T Consensus 48 ~l~g~v~~~lglr~~Le~~----GhelV~~sd~~~~~-~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~ 122 (186) T d2naca2 48 QLLGSVSGELGLRKYLESN----GHTLVVTSDKDGPD-SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGI 122 (186) T ss_dssp SCCSBTTTGGGCHHHHHHT----TCEEEEESCCSSTT-SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSS T ss_pred hhcccccchhhHHHHHHHC----CCEEEEecCCCCCh-HHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEecc Confidence 4689999999999999999 99999999999877 99999999999999999999999 999999999999 Q ss_pred ccCccchHHHHHcCCeEEecCCCchHhHHHHH--------HHHHHHHHHhhhhhhhhhhcCccc Q psy13054 630 GYDHLELHEIKARGIRVGSVGHISSDTVAEYN--------IGLAIAVSRRFQEGRKCITSGEWA 685 (1128) Q Consensus 630 G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~a--------i~llLa~~R~i~~~~~~~r~G~W~ 685 (1128) ||||||+++|++|||.|+|+||+|+.+||||+ +.+++..+|++...+..+++|+|+ T Consensus 123 G~D~VDl~aa~e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~A 186 (186) T d2naca2 123 GSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 186 (186) T ss_dssp CCTTBCHHHHHHTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEEC T ss_pred CCccccHHHHHhCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccccC Confidence 99999999999999999999999999999999 889999999999999999999984 |
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Probab=99.87 E-value=2.3e-22 Score=196.36 Aligned_cols=119 Identities=30% Similarity=0.472 Sum_probs=104.3 Q ss_pred CCeEEEeccCCCCchHHHHhcccccEEEeCCCCCCCCHHHHHHHhcCcceeeeccccccchhhhhccCCceecccccCCC Q psy13054 514 KPKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLD 593 (1128) Q Consensus 514 k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1128) |||||++++... ++++.|++.|+++.+ .++...+++|+++++.+||+++++.++++++++|+..+ T Consensus 1 K~kVlit~~~~~--~~~~~l~~~~~v~~~-~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~------------ 65 (129) T d1gdha2 1 KKKILITWPLPE--AAMARARESYDVIAH-GDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIP------------ 65 (129) T ss_dssp CCEEEESSCCCH--HHHHHHHTTSEEEEC-CSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSC------------ T ss_pred CCEEEEeCCCCH--HHHHHHHcCCcEEEe-CCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhh------------ Confidence 899999965322 489999999998766 45678899999999999999999999999999999972 Q ss_pred ccccccCCCCCceeeeecccccccCCCeEEEEEcccccCccchHHHHHcCCeEEecCCCchHhHHHHHHHHHHHHHHhh Q psy13054 594 LDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRF 672 (1128) Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~i 672 (1128) ++||+|+++|+||||||+++|++|||+|+|+||+|+++|||+++++|+.+.+-+ T Consensus 66 -------------------------~~LK~I~~~gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~l~ 119 (129) T d1gdha2 66 -------------------------ENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119 (129) T ss_dssp -------------------------TTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHHHH T ss_pred -------------------------hcceeeeecccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHHHh Confidence 379999999999999999999999999999999999999998777666666543 |
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562] Probab=99.85 E-value=7.7e-22 Score=193.22 Aligned_cols=127 Identities=19% Similarity=0.214 Sum_probs=105.1 Q ss_pred CCCeEEEeccCCCCchHHHHhcccccEE-EeCCCCCCCCHHHHHHHhcCcceeeeccccccchhhhhccCCceecccccC Q psy13054 513 SKPKLFLTRDDYSRVPAFEILGEMFDII-TYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFG 591 (1128) Q Consensus 513 ~k~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (1128) +|||||++++..+ .+++.|.+.++.. .+ .....+++++++.+.+||++++++++++++++|+.+ T Consensus 3 ~kmKILv~d~i~~--~a~~~L~~~g~~~v~~--~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~----------- 67 (132) T d1sc6a2 3 DKIKFLLVEGVHQ--KALESLRAAGYTNIEF--HKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA----------- 67 (132) T ss_dssp SSCCEEECSCCCH--HHHHHHHHTTCCCEEE--CSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC----------- T ss_pred CCCEEEEECCCCH--HHHHHHHhCCCEEEEe--CCCCCCHHHHHHhhcCCcEEEEecccccChhhhhcc----------- Confidence 6899999953322 3799999987653 33 345678999999999999999999999999999998 Q ss_pred CCccccccCCCCCceeeeecccccccCCCeEEEEEcccccCccchHHHHHcCCeEEecCCCchHhHHHHHHHHHHHHHHh Q psy13054 592 LDLDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRR 671 (1128) Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~ 671 (1128) |+||+|+++|+||||||+++|++|||.|+|+||+++++|||+++.||+ .|+ T Consensus 68 ---------------------------p~Lk~I~~~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~ 118 (132) T d1sc6a2 68 ---------------------------EKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKL 118 (132) T ss_dssp ---------------------------SSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHH T ss_pred ---------------------------ccceeEEEecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHh Confidence 899999999999999999999999999999999999999998665554 555 Q ss_pred hhhhhhhhhcCc Q psy13054 672 FQEGRKCITSGE 683 (1128) Q Consensus 672 i~~~~~~~r~G~ 683 (1128) +..+++..+-+. T Consensus 119 ~~~~d~~~~~~~ 130 (132) T d1sc6a2 119 IKYSDNGSTLSA 130 (132) T ss_dssp HHHHHHCCCTTB T ss_pred hHHHhCcCcccc Confidence 555555544443 |
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Probab=99.83 E-value=2.7e-21 Score=189.27 Aligned_cols=128 Identities=14% Similarity=0.181 Sum_probs=107.3 Q ss_pred CeEEEeccCCCCchHHHHhcccccE-EEeCCCCCCCCHHHHHHHhcCcceeeeccccccchhhhhccCCceecccccCCC Q psy13054 515 PKLFLTRDDYSRVPAFEILGEMFDI-ITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLD 593 (1128) Q Consensus 515 ~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1128) |||++........|.++.+.+.+++ +.|.. ... .++.++.+.+||+++++..+++++++|+..+. T Consensus 1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~--~~~-~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~----------- 66 (131) T d1dxya2 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHT--EFL-DENTVEWAKGFDGINSLQTTPYAAGVFEKMHA----------- 66 (131) T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECS--SCC-CTTGGGGGTTCSEEEECCSSCBCHHHHHHHHH----------- T ss_pred CEEEEEecCcCcHHHHHHHHHHcCeEEEEcC--CCC-CHHHHHHhcCCCEEEEecCCCCCHHHHhhccc----------- Confidence 6888875555566789888776554 34422 222 36778899999999999999999999997521 Q ss_pred ccccccCCCCCceeeeecccccccCCCeEEEEEcccccCccchHHHHHcCCeEEecCCCchHhHHHHHHHHHHHHHHhhh Q psy13054 594 LDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 673 (1128) Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~i~ 673 (1128) ++||+|+++|+||||||+++|++|||.|+|+||+++++||||++++||++.|++. T Consensus 67 -------------------------~~Lk~I~~~~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~ 121 (131) T d1dxya2 67 -------------------------YGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLT 121 (131) T ss_dssp -------------------------TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHH T ss_pred -------------------------CCeEEEEEcccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchH Confidence 5899999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhc Q psy13054 674 EGRKCITS 681 (1128) Q Consensus 674 ~~~~~~r~ 681 (1128) .+++.++. T Consensus 122 ~~~~~~e~ 129 (131) T d1dxya2 122 KGETSTEV 129 (131) T ss_dssp HSCCTTEE T ss_pred HHHhhccC Confidence 98877654 |
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84] Probab=99.83 E-value=9.7e-21 Score=184.77 Aligned_cols=116 Identities=30% Similarity=0.457 Sum_probs=101.6 Q ss_pred cEEEEEeeccccccccccccccccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhc Q psy13054 20 EKLLLIVQNSHGISSFSRQGSRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDR 99 (1128) Q Consensus 20 ~~ll~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~ 99 (1128) ||+|++. +++++.+++++ +.|+++.++. +...+.+|+.+.++++|+|+++..+++++++|++ T Consensus 2 ~kVlit~---------------~~~~~~~~~l~--~~~~v~~~~~-~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~ 63 (129) T d1gdha2 2 KKILITW---------------PLPEAAMARAR--ESYDVIAHGD-DPKITIDEMIETAKSVDALLITLNEKCRKEVIDR 63 (129) T ss_dssp CEEEESS---------------CCCHHHHHHHH--TTSEEEECCS-TTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHH T ss_pred CEEEEeC---------------CCCHHHHHHHH--cCCcEEEeCC-CCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhh Confidence 6778777 68888888887 7799988774 3457899999999999999988778999999999 Q ss_pred cCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHHHHHHHHHhh Q psy13054 100 SGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSR 153 (1128) Q Consensus 100 ~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~alalmL~l~R 153 (1128) ++++||+|+++|+||||||+++|++|||+|+|+||+++++|||+++++|+.+.+ T Consensus 64 ~~~~LK~I~~~gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~ 117 (129) T d1gdha2 64 IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA 117 (129) T ss_dssp SCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH T ss_pred hhhcceeeeecccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH Confidence 755899999999999999999999999999999999999999987766666654 |
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562] Probab=99.81 E-value=4.9e-20 Score=180.26 Aligned_cols=112 Identities=17% Similarity=0.211 Sum_probs=91.5 Q ss_pred ccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHH Q psy13054 42 LLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDE 121 (1128) Q Consensus 42 ~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~a 121 (1128) .+.++.++.|+.....++...+. ..+++++.+.++++|+++++..+++++++|+++ |+||+|+++|+||||||+++ T Consensus 12 ~i~~~a~~~L~~~g~~~v~~~~~---~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~-p~Lk~I~~~gvG~D~IDl~a 87 (132) T d1sc6a2 12 GVHQKALESLRAAGYTNIEFHKG---ALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGTNQVDLDA 87 (132) T ss_dssp CCCHHHHHHHHHTTCCCEEECSS---CCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCCTTBCHHH T ss_pred CCCHHHHHHHHhCCCEEEEeCCC---CCCHHHHHHhhcCCcEEEEecccccChhhhhcc-ccceeEEEecccccccCHHH Confidence 46778888876433334544442 467899999999999999987789999999986 89999999999999999999 Q ss_pred HHhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHH Q psy13054 122 IKSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 (1128) Q Consensus 122 a~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~ 159 (1128) |++|||.|+|+|++++++|||++++||+ .|++...+ T Consensus 88 a~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d 123 (132) T d1sc6a2 88 AAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSD 123 (132) T ss_dssp HHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHH T ss_pred HHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHh Confidence 9999999999999999999998665554 45444444 |
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582] Probab=99.80 E-value=2e-20 Score=182.98 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=94.6 Q ss_pred chhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhcc-CCCceEEEEcCcccccccHHHH Q psy13054 44 VPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRS-GENLKVIATFSVGHDHLHLDEI 122 (1128) Q Consensus 44 ~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~-~~~LK~I~~~gvG~DnIDl~aa 122 (1128) ..+.++++.....+++.+++.. ..+++.+.++++|+|+++...++++++|+++ .++||+|+++|+||||||+++| T Consensus 12 e~~~l~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d~ID~~~a 87 (131) T d1dxya2 12 EIQYFKQWAKDTGNTLEYHTEF----LDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAM 87 (131) T ss_dssp THHHHHHHHHHHCCEEEECSSC----CCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHH T ss_pred cHHHHHHHHHHcCeEEEEcCCC----CCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEccccccccccccc Confidence 3344555543345788877642 2356788899999999988889999999975 2489999999999999999999 Q ss_pred HhCCcEEEecCCCCchhHHHHHHHHHHHHhhchHHHH Q psy13054 123 KSRGIRVGTVGPVSSDTVAEYNIGLAIAVSRRFQQRH 159 (1128) Q Consensus 123 ~erGI~V~n~pg~~~~aVAE~alalmL~l~R~i~~~~ 159 (1128) ++|||.|+|+|++++++|||+++++||++.|++..++ T Consensus 88 ~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~ 124 (131) T d1dxya2 88 KQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124 (131) T ss_dssp HHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSC T ss_pred ccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHH Confidence 9999999999999999999999999999999998754 |
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Probab=99.80 E-value=8.2e-22 Score=190.19 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=103.5 Q ss_pred CeEEEeccCCCCchHHHHhcccccEEEeCCCCCCCCHHHHHHHhcCcceeeeccccccchhhhhccCCceecccccCCCc Q psy13054 515 PKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDL 594 (1128) Q Consensus 515 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (1128) |||+++++... ...+.|.+.++++... .+.++|+++++ ++++++|+.. T Consensus 1 Mki~v~~~lp~--e~~e~L~~~~~v~~~~-------------d~~~~d~~l~~---~~~~~~l~~~-------------- 48 (121) T d1qp8a2 1 MELYVNFELPP--EAEEELRKYFKIVRGG-------------DLGNVEAALVS---RITAEELAKM-------------- 48 (121) T ss_dssp CEEECCSCCCH--HHHHHHHTTCEEECSS-------------CCTTBCCCCBS---CCCHHHHHHC-------------- T ss_pred CEEEEeCCCCH--HHHHHhhhcceEeecc-------------cccccceeeee---ccCHHHHhcC-------------- Confidence 68999953222 2788899988887652 14667777654 6899999988 Q ss_pred cccccCCCCCceeeeecccccccCCCeEEEEEcccccCccchHHHHHcCCeEEecCCCchHhHHHHHHHHHHHHHHhhhh Q psy13054 595 DQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQE 674 (1128) Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~i~~ 674 (1128) |+||+|++.|+||||||+++++ +||.|+|+||+|+.+||||++++||++.|+ T Consensus 49 ------------------------~~Lk~i~~~~aG~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~--- 100 (121) T d1qp8a2 49 ------------------------PRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN--- 100 (121) T ss_dssp ------------------------TTCCCEEBSSSCCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH--- T ss_pred ------------------------CCceEEEecccCcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC--- Confidence 8999999999999999999996 699999999999999999999999999984 Q ss_pred hhhhhhcCccccccccccCCccCCCCCCEEEEEecChhhHHHHHHHhhCC Q psy13054 675 GRKCITSGEWALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFK 724 (1128) Q Consensus 675 ~~~~~r~G~W~~~~~~~~~~~~~~l~gktvGIiG~G~IG~~va~r~~afg 724 (1128) |||+|+|+||+++|+|+++|| T Consensus 101 -----------------------------l~i~G~G~iG~~iA~r~~a~G 121 (121) T d1qp8a2 101 -----------------------------LITYATGGRPRNIAKREDYIG 121 (121) T ss_dssp -----------------------------HHHHHTTSCCSCBCCGGGTC- T ss_pred -----------------------------EEEEcCCHHHHHHHHHHHhcC Confidence 589999999999999999998 |
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Probab=99.78 E-value=1.6e-19 Score=176.51 Aligned_cols=126 Identities=18% Similarity=0.216 Sum_probs=101.1 Q ss_pred CeEEEeccCCCCchHHHHhcccccEEEeCCCCCCCCHHHHHHH-hcCcceeeeccccccchhhhhccCCceecccccCCC Q psy13054 515 PKLFLTRDDYSRVPAFEILGEMFDIITYPASEGQIPRDIFIEK-LRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLD 593 (1128) Q Consensus 515 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (1128) |+|++.. ...-..-++.|++..++..+.. .. .+|+.++ +..++++++++.+++++++|+.. T Consensus 2 P~v~~ld-~~d~~~e~~~L~~~~~v~~~~~---~s-~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~------------- 63 (133) T d1mx3a2 2 PLVALLD-GRDCTVEMPILKDVATVAFCDA---QS-TQEIHEKVLNEAVGALMYHTITLTREDLEKF------------- 63 (133) T ss_dssp CEEEESS-CSCCTTTHHHHTTTCEEEECCC---SS-GGGSCHHHHHHEEEEEECSSSCBCHHHHTTC------------- T ss_pred CEEEEec-CCcchhhHHHhcccceEEEecC---CC-hHHHHHHHhccCcEEEEEeCCCcCHHHHhhC------------- Confidence 7777773 2221124788999888766533 33 4445555 45789999999999999999998 Q ss_pred ccccccCCCCCceeeeecccccccCCCeEEEEEcccccCccchHHHHHcCCeEEecCCCchHhHHHHHHHHHHHHHHhhh Q psy13054 594 LDQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQ 673 (1128) Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~i~ 673 (1128) |+||+|++.|+||||||+++|+++||.|+|+||+++ +||||+++|||+++|+++ T Consensus 64 -------------------------~~Lk~I~~~g~G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~ 117 (133) T d1mx3a2 64 -------------------------KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIR 117 (133) T ss_dssp -------------------------SSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHH T ss_pred -------------------------CCCeEEEEcCCCcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHH Confidence 899999999999999999999999999999999998 579999999999999998 Q ss_pred hhhhhhhcCcc Q psy13054 674 EGRKCITSGEW 684 (1128) Q Consensus 674 ~~~~~~r~G~W 684 (1128) .+.+-...+.| T Consensus 118 ~a~~g~~~~~~ 128 (133) T d1mx3a2 118 RAITGRIPDSL 128 (133) T ss_dssp HHHHSCTTTTC T ss_pred HHHhccccchh Confidence 88544444444 |
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306] Probab=99.75 E-value=1.8e-19 Score=182.58 Aligned_cols=121 Identities=20% Similarity=0.279 Sum_probs=99.9 Q ss_pred EEEEEeeccccccccccccccccchhhhhhhhccCCceEEEcCCCCCCCCHHHHHHhcCCceEEEeCC--CCCCCHHHHh Q psy13054 21 KLLLIVQNSHGISSFSRQGSRLLVPESLSKLRFNSRFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNP--HQKVDKEVLD 98 (1128) Q Consensus 21 ~ll~~~~~~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~--~~~i~~evL~ 98 (1128) .++.+.++..|++.|.++ ..++++.+++. ..+.+++.+++.|+|++|+++ ..++++|+|+ T Consensus 48 ~l~g~v~~~lglr~~Le~----------------~GhelV~~sd~--~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~ 109 (186) T d2naca2 48 QLLGSVSGELGLRKYLES----------------NGHTLVVTSDK--DGPDSVFERELVDADVVISQPFWPAYLTPERIA 109 (186) T ss_dssp SCCSBTTTGGGCHHHHHH----------------TTCEEEEESCC--SSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHH T ss_pred hhcccccchhhHHHHHHH----------------CCCEEEEecCC--CCChHHHHhhcccCCEEEEecccccccCHHHHh Confidence 466666666666655543 34777776643 235578899999999999964 4679999999 Q ss_pred ccCCCceEEEEcCcccccccHHHHHhCCcEEEecCCCCchhHHHHH--------HHHHHHHhhchHHHHH Q psy13054 99 RSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGPVSSDTVAEYN--------IGLAIAVSRRFQQRHN 160 (1128) Q Consensus 99 ~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg~~~~aVAE~a--------lalmL~l~R~i~~~~~ 160 (1128) ++ |+||+|+++|+|+||||+++|++|||.|+|+||+|+.+||||+ +++++...|++...+. T Consensus 110 ~a-p~LKlI~~~g~G~D~VDl~aa~e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~ 178 (186) T d2naca2 110 KA-KNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYL 178 (186) T ss_dssp HC-TTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGE T ss_pred cC-ccceEEEEeccCCccccHHHHHhCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhh Confidence 86 8999999999999999999999999999999999999999999 7788888888886554 |
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587] Probab=99.71 E-value=2.4e-18 Score=168.65 Aligned_cols=120 Identities=10% Similarity=0.107 Sum_probs=94.1 Q ss_pred eEEEeccCCCCchHHHHhcc-cccEEEeCCCCCCCCHHHHHHHhcCcceeeeccccccchhhhhccCCceecccccCCCc Q psy13054 516 KLFLTRDDYSRVPAFEILGE-MFDIITYPASEGQIPRDIFIEKLRGCSALLCTSRDRVDKQVLDESGGYRCTEDFFGLDL 594 (1128) Q Consensus 516 k~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (1128) ||++-...-...|+++.+.+ .+++... ..+...+ +++++.+.|||+++++..+++++++|+.... T Consensus 2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~-~~~~~~~-~e~~~~~~~~d~viv~~~~~i~~eil~~l~~------------ 67 (134) T d1j4aa2 2 KIFAYAIREDEKPFLKEWEDAHKDVEVE-YTDKLLT-PETVALAKGADGVVVYQQLDYIAETLQALAD------------ 67 (134) T ss_dssp EEEECSCCGGGHHHHHHHHHTCTTSEEE-ECSSCCC-TTTGGGGTTCSEEEECCSSCBCHHHHHHHHH------------ T ss_pred eEEEEecccccHHHHHHHHHhCCCEEEE-ECCCCCC-HHHHHHhcCCCEEEEecCCCcCHHHHhhhcc------------ Confidence 67773222235688877654 4555322 1333443 5678999999999999999999999997521 Q ss_pred cccccCCCCCceeeeecccccccCCCeEEEEEcccccCccchHHHHHcCCeEEecCCCchHhHHHHHHHHHHHHHHhhhh Q psy13054 595 DQMFRNPSKRHVNIETVLGVSFLIKNLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQE 674 (1128) Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~p~Lk~I~~~g~G~D~iD~~~a~~~gI~v~n~pg~~~~aVAE~ai~llLa~~R~i~~ 674 (1128) ++||+|+++|+||||||+++|+++||.|+|+|++ +||||++++||+++|++.. T Consensus 68 ------------------------~~LK~I~~~~vG~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~ 120 (134) T d1j4aa2 68 ------------------------NGITKMSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL 120 (134) T ss_dssp ------------------------TTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH T ss_pred ------------------------cCeeEEEEccCCcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH Confidence 5799999999999999999999999999999998 5899999999999998755 Q ss_pred hh Q psy13054 675 GR 676 (1128) Q Consensus 675 ~~ 676 (1128) .- T Consensus 121 ~~ 122 (134) T d1j4aa2 121 EL 122 (134) T ss_dssp HH T ss_pred HH Confidence 43 |
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606] Probab=99.71 E-value=1.1e-17 Score=163.30 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=85.0 Q ss_pred CCceEEEcCCCCCCCCHHHHHH-hcCCceEEEeCCCCCCCHHHHhccCCCceEEEEcCcccccccHHHHHhCCcEEEecC Q psy13054 55 SRFDIDTYPVSEGRMPRDIFIE-KLKGCSALLCNPHQKVDKEVLDRSGENLKVIATFSVGHDHLHLDEIKSRGIRVGTVG 133 (1128) Q Consensus 55 ~~~~v~~~~~~~~~~~~eel~~-~l~~adaIi~~~~~~i~~evL~~~~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~p 133 (1128) ...++.+++.. +.+|+.+ .+.++|+++++...++++++|+++ |+||+|+++|+||||||+++|+++||.|+|+| T Consensus 21 ~~~~v~~~~~~----s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~-~~Lk~I~~~g~G~d~iD~~~~~~~gI~v~n~p 95 (133) T d1mx3a2 21 DVATVAFCDAQ----STQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP 95 (133) T ss_dssp TTCEEEECCCS----SGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCCTTBCHHHHHHTTCEEECCC T ss_pred ccceEEEecCC----ChHHHHHHHhccCcEEEEEeCCCcCHHHHhhC-CCCeEEEEcCCCcccEeeeeheeCCEEEEcCC Confidence 55677776542 3445444 446788888887889999999987 89999999999999999999999999999999 Q ss_pred CCCchhHHHHHHHHHHHHhhchHHHHH Q psy13054 134 PVSSDTVAEYNIGLAIAVSRRFQQRHN 160 (1128) Q Consensus 134 g~~~~aVAE~alalmL~l~R~i~~~~~ 160 (1128) ++++ +||||+++|||+++|+++++.+ T Consensus 96 ~~~~-~vAE~a~~lil~~~R~i~~a~~ 121 (133) T d1mx3a2 96 AASV-YSEQASIEMREEAAREIRRAIT 121 (133) T ss_dssp STTH-CCHHHHHHHHHHHHHHHHHHHH T ss_pred CCCc-hhHHHHHHHHHHHHhhHHHHHh Confidence 9998 5799999999999999997643 |
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587] Probab=99.66 E-value=5.4e-17 Score=158.95 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=81.6 Q ss_pred CceEEEcCCCCCCCCHHHHHHhcCCceEEEeCCCCCCCHHHHhcc-CCCceEEEEcCcccccccHHHHHhCCcEEEecCC Q psy13054 56 RFDIDTYPVSEGRMPRDIFIEKLKGCSALLCNPHQKVDKEVLDRS-GENLKVIATFSVGHDHLHLDEIKSRGIRVGTVGP 134 (1128) Q Consensus 56 ~~~v~~~~~~~~~~~~eel~~~l~~adaIi~~~~~~i~~evL~~~-~~~LK~I~~~gvG~DnIDl~aa~erGI~V~n~pg 134 (1128) ..++...+. .. .+++.+.++|+|+|+++...++++++|+++ .++||+|+++|+||||||+++|+++||.|+|+|+ T Consensus 25 ~v~v~~~~~---~~-~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d~ID~~aa~~~gI~V~N~P~ 100 (134) T d1j4aa2 25 DVEVEYTDK---LL-TPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPV 100 (134) T ss_dssp TSEEEECSS---CC-CTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCC T ss_pred CEEEEECCC---CC-CHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcCccCHHHHHhCCeEEEECCC Confidence 456666553 22 356889999999999988889999999975 2479999999999999999999999999999999 Q ss_pred CCchhHHHHHHHHHHHHhhchHH Q psy13054 135 VSSDTVAEYNIGLAIAVSRRFQQ 157 (1128) Q Consensus 135 ~~~~aVAE~alalmL~l~R~i~~ 157 (1128) | +|||+|+++||+++|++.. T Consensus 101 ~---svae~a~~~ml~l~r~~~~ 120 (134) T d1j4aa2 101 Y---SYTTHAVRNMVVKAFDNNL 120 (134) T ss_dssp S---CCBHHHHHHHHHHHHHHHH T ss_pred C---cHHHHHHHHHHHHHHHHhH Confidence 8 5899999999999998754 |
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773] Probab=99.61 E-value=8e-18 Score=162.00 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=80.1 Q ss_pred EeecCCChhhhhcCCCCccEEEEccccCCcCChhhhhhCCcEEEEcCCCChhHHHHHHHHHHHHHHhccHHHHHHHHcCC Q psy13054 859 ILYTSRNKVKTPKRTENLKVITTFSVGYDHLELHEIKARGIRVGSVGHISSDTVAEYNIGLAIAVSRRFQEGRKCITSGE 938 (1128) Q Consensus 859 ~~~~~i~~~~l~~~~~~LK~I~~~~aGvd~idl~a~~~~GI~V~n~p~~~a~sVAE~alaliL~~~R~i~~~~~~~~~g~ 938 (1128) .+.++++++.|+++ |+||||++.|+|+||+|++.++ +||.|+|++|+|+.+||||+++++|++.| T Consensus 35 ~l~~~~~~~~l~~~-~~Lk~i~~~~aG~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r------------- 99 (121) T d1qp8a2 35 ALVSRITAEELAKM-PRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVR------------- 99 (121) T ss_dssp CCBSCCCHHHHHHC-TTCCCEEBSSSCCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHH------------- T ss_pred eeeeccCHHHHhcC-CCceEEEecccCcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcC------------- Confidence 34568999999997 9999999999999999999985 69999999999999999999999999986 Q ss_pred CccccccccCCcccccCCCeEEEEEcChhhHHHHHHHhhCC Q psy13054 939 WALKQTHIIGPNIMGLKGATVGIVGLGNIGLETAKLLKAFK 979 (1128) Q Consensus 939 w~~~~~~~~~~~~~~L~gktvGIIG~G~IG~~vA~~l~afG 979 (1128) +++|+|+|+||+++|+|+++|| T Consensus 100 -------------------~l~i~G~G~iG~~iA~r~~a~G 121 (121) T d1qp8a2 100 -------------------NLITYATGGRPRNIAKREDYIG 121 (121) T ss_dssp -------------------HHHHHHTTSCCSCBCCGGGTC- T ss_pred -------------------CEEEEcCCHHHHHHHHHHHhcC Confidence 3689999999999999999998 |
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606] Probab=99.49 E-value=1.6e-14 Score=144.43 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=97.0 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) .|.||+++|+|||.||+.+|+++++|||+|++|+..+.+.. +...|++..+++++++.||+|+.+. .++++|+++ T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI~~e 96 (163) T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDIILGR 96 (163) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSBCHH T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccchhHH Confidence 58999999999999999999999999999999998765554 5566888889999999999998654 477899999 Q ss_pred HHccCCCCcEEEEcC-CCcccCHHHHHHHHhcCCceEEEEecc Q psy13054 1032 QFSLMKPTAILVNTS-RGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~a-RG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128) .|++||+|+++.|++ +..-+|.++|.+...+.+.....+|.| T Consensus 97 h~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y 139 (163) T d1li4a1 97 HFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRY 139 (163) T ss_dssp HHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEE T ss_pred HHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEE Confidence 999999999999986 666799999987544433333334544 |
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833] Probab=99.17 E-value=2.8e-11 Score=120.12 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=88.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) -+.||++.|+|||.+|+.+|++++++|++|++++..+-+.. +...|++..+++|+++.+|+++.+... +++|+.+ T Consensus 20 ~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTGn----~~vI~~~ 95 (163) T d1v8ba1 20 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGN----VDVIKLE 95 (163) T ss_dssp CCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSS----SSSBCHH T ss_pred eecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCCC----CccccHH Confidence 48999999999999999999999999999999976665543 556788889999999999999987773 4689999 Q ss_pred HHccCCCCcEEEEcCCCcc-cCHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGL-LDQEALVE 1058 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~l-Vde~aL~~ 1058 (1128) .|.+||+|+++.|+++... +|-++|.+ T Consensus 96 h~~~MKdgaIl~N~GHfd~EIdv~~L~~ 123 (163) T d1v8ba1 96 HLLKMKNNAVVGNIGHFDDEIQVNELFN 123 (163) T ss_dssp HHTTCCTTCEEEECSSTTTSBCHHHHHT T ss_pred HHHHhhCCeEEEeccccchhhhhHHHHh Confidence 9999999999999999876 57766654 |
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371] Probab=99.03 E-value=1.3e-10 Score=116.14 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=96.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCccccccc--CHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLI--GRKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li--~~~~ 1032 (1128) .+|||||+|.||+.+|++|...|.+|++||+...+.+ ..+.+... .+..|++++||+|++|+|..++.+.++ .... T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161) T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161) T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch Confidence 3699999999999999999999999999997766544 44555554 489999999999999999999999876 2358 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) +..+++|.++|+++....-+...+.+.+++..+... T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v 116 (161) T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEML 116 (161) T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCcee Confidence 889999999999999999999999999999877553 |
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148] Probab=98.97 E-value=1.2e-09 Score=109.15 Aligned_cols=145 Identities=21% Similarity=0.151 Sum_probs=99.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC--cccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA--QLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~--~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) .+|||||+|+||..+|+.|+..|.+|.+||++....+ +.+.+. ...+..+.+++||+|++++| ...+..+++ +.. T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp-~~~~~~vl~-~l~ 78 (165) T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTP-IQLILPTLE-KLI 78 (165) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSC-HHHHHHHHH-HHG T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCc-Hhhhhhhhh-hhh Confidence 3699999999999999999999999999987654433 445553 23355678899999999999 457778884 677 Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC-CCCCCCccccCCCeEECCCCCCCcHHHHH Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE-PLPADHPLVQLDNCVLTPHTSSATKAVRD 1105 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E-Pl~~~~pL~~~pNvilTPHiag~t~e~~~ 1105 (1128) ..+++++++++++....-.... ...+...-+..-.+...+.. |..+...|+.-..+++||+-++. .+..+ T Consensus 79 ~~l~~~~iv~~~~s~~~~~~~~-~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~-~~~~~ 149 (165) T d2f1ka2 79 PHLSPTAIVTDVASVKTAIAEP-ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD-PEQLA 149 (165) T ss_dssp GGSCTTCEEEECCSCCHHHHHH-HHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC-HHHHH T ss_pred hhcccccceeeccccchHHHHH-HHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC-HHHHH Confidence 8899999999998765443333 33444433333222222211 22334567777789999986654 34333 |
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287] Probab=98.88 E-value=1.2e-09 Score=109.10 Aligned_cols=114 Identities=14% Similarity=0.184 Sum_probs=96.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCccccccc--CHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLI--GRKQ 1032 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li--~~~~ 1032 (1128) ++|||||+|.||.++|++|..-|.+|.+||++..+.+ ....+... .++.|++..+|+|++++|..+..+.++ .... T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162) T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162) T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc Confidence 5799999999999999999999999999997766554 44445543 489999999999999999998888775 3457 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEec Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDV 1072 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV 1072 (1128) +..+++|.++|+++....-+...+.+.+++..+.. +|. T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~--~da 119 (162) T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAM--LDA 119 (162) T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE--EEC T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcE--Eec Confidence 88899999999999999999999999999987755 454 |
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363] Probab=98.79 E-value=1.2e-08 Score=101.94 Aligned_cols=146 Identities=17% Similarity=0.132 Sum_probs=106.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh-hhhcCCc--c-cChHh-hhccCCEEEEecCCCcccccccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE-GTALGAQ--L-VPLDT-LCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~-~~~~g~~--~-~~l~e-ll~~sDvV~l~lPlt~~T~~li~ 1029 (1128) |+|+|||+|.||..+|+.|+..|. +|++||++....+ +.+.+.. . .+.++ ....+|+|++++| ..++..+++ T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p-~~~~~~vl~ 80 (171) T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIAK 80 (171) T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHHH T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCC-chhhhhhhh Confidence 579999999999999999988774 8899987655444 4455542 1 24444 4458999999999 445666664 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCC-CCCCCCccccCCCeEECCCCCCCcHHHHH Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPE-PLPADHPLVQLDNCVLTPHTSSATKAVRD 1105 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~E-Pl~~~~pL~~~pNvilTPHiag~t~e~~~ 1105 (1128) +....+++++++++++.....-.+++.+.+...-+.+--+...+.. |..++..|+.-.++++|||-.. +.+..+ T Consensus 81 -~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~-~~~~~~ 155 (171) T d2g5ca2 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT-DKKRLK 155 (171) T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS-CHHHHH T ss_pred -hhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCC-CHHHHH Confidence 5667799999999999987777777888887766666666655442 4455667888889999999664 444443 |
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606] Probab=98.70 E-value=3.9e-09 Score=104.91 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=78.7 Q ss_pred hhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCC Q psy13054 252 LSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALT 331 (1128) Q Consensus 252 ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT 331 (1128) +|+.+|++++|+++.+.++ ..++...-++.-.|++..+++++++.||+|+.+ T Consensus 35 iG~g~A~~~rg~G~~V~v~------------------------e~dp~~al~A~~dG~~v~~~~~a~~~adivvta---- 86 (163) T d1li4a1 35 VGKGCAQALRGFGARVIIT------------------------EIDPINALQAAMEGYEVTTMDEACQEGNIFVTT---- 86 (163) T ss_dssp HHHHHHHHHHHTTCEEEEE------------------------CSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC---- T ss_pred ccHHHHHHHHhCCCeeEee------------------------ecccchhHHhhcCceEeeehhhhhhhccEEEec---- Confidence 6888899998876543222 112212112334578888999999999988665 Q ss_pred cccccccCHHHHhcCCCCcEEEEec-CCCccCHHHHHHHHHcCCeeEEEEecCCC Q psy13054 332 KDTEQLIGRKQFSLMKPTAILINTS-RGGLLDQEALVEFLKDKKIGGAGLDVMIP 385 (1128) Q Consensus 332 ~~T~~lIn~~~l~~MK~gaiLINta-RG~lVDe~AL~~AL~sG~IagAaLDVfe~ 385 (1128) +.++|+|+.+.|++||+|++|.|++ +..-||.++|.+...+.+...-.+|.|+- T Consensus 87 TGn~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~l 141 (163) T d1li4a1 87 TGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRL 141 (163) T ss_dssp SSCSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEEC T ss_pred CCCccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEEe Confidence 5799999999999999999999985 89999999998866565555556676653 |
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940] Probab=98.63 E-value=2.2e-08 Score=100.99 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=92.9 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC--------c-ccChHhhhccCCEEEEecCCCcccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA--------Q-LVPLDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~--------~-~~~l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .++|||||+|+||.++|++|..-|.+|++||++..+.+ ..+.+. . ..++.+.+..+|++++++|..+.+. T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176) T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176) T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH Confidence 36799999999999999999999999999998776654 222221 1 1256678889999999999999888 Q ss_pred cccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) .++ ...+..+++|.++|+++....-+...+.+.+.+..+... T Consensus 82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~l 123 (176) T d2pgda2 82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV 123 (176) T ss_dssp HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE T ss_pred HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCcee Confidence 876 478899999999999999999999999999988876553 |
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274] Probab=98.55 E-value=2.6e-08 Score=98.51 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=87.5 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccC Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128) +|||||+|+||..+|++|...|..+ +|++..++.. ..+.+....+..+.+.++|++++++|..++..... ...+..+ T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~ 79 (156) T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL 79 (156) T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhh-ccccccc Confidence 6999999999999999998888754 6766655443 22222233455677778999999999888877654 5789999 Q ss_pred CCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1037 KPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1037 k~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) +++.++|+++....-....+.+.+++..+... T Consensus 80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~l 111 (156) T d2cvza2 80 REGTYWVDATSGEPEASRRLAERLREKGVTYL 111 (156) T ss_dssp CTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE T ss_pred cccccccccccCCHHHHHHHHHHHHHcCCeEE Confidence 99999999999999999999999998877554 |
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] Probab=98.31 E-value=1.9e-07 Score=91.67 Aligned_cols=103 Identities=11% Similarity=0.066 Sum_probs=77.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc-cChHhhhccCCEEEEecCCCcccccccCHHHHc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFS 1034 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~ 1034 (1128) .+|||||+|+||+.+|+.|..-|.+|++||+...+.. ....+... .+.+|++++||+|++++|..... ..+. +... T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~-~~~~-~~~~ 78 (152) T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVAL-GAAR-RAGR 78 (152) T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHH-HHHH-HHHT T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHH-HHHH-hhcc Confidence 3799999999999999999999999999987766543 22223222 47899999999999999965433 2321 1122 Q ss_pred cCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1035 LMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1035 ~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) ..+..+|+++.........+.+.+++. T Consensus 79 --~~~~~~id~st~~p~~~~~l~~~~~~~ 105 (152) T d1i36a2 79 --HVRGIYVDINNISPETVRMASSLIEKG 105 (152) T ss_dssp --TCCSEEEECSCCCHHHHHHHHHHCSSS T ss_pred --cCCceeeccCcCCHHHHHHHHHHHhcc Confidence 346889999998888788888888764 |
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314] Probab=98.30 E-value=6.9e-07 Score=87.78 Aligned_cols=99 Identities=15% Similarity=0.262 Sum_probs=79.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) .+|||||+|+||+++++.|...|.++++|+++.++.. .+..|+... +.++++++||+|+++++ |+. + ++.+ T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~---~-~~vl 74 (152) T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL---F-ETVL 74 (152) T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG---H-HHHH T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh---H-HHHh Confidence 3699999999999999999999999999987655544 345577664 79999999999999997 321 2 4678 Q ss_pred ccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1034 SLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1034 ~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) +.++++..+|+++-| +..+.|.+.|..+ T Consensus 75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~ 102 (152) T d2ahra2 75 KPLHFKQPIISMAAG--ISLQRLATFVGQD 102 (152) T ss_dssp TTSCCCSCEEECCTT--CCHHHHHHHHCTT T ss_pred hhcccceeEeccccc--ccHHHHHhhhccc Confidence 889999999999877 5667777777543 |
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691] Probab=98.15 E-value=1.7e-06 Score=86.68 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=91.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCc---------ccC---hHhhhccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQ---------LVP---LDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~---------~~~---l~ell~~sDvV~l~lPlt~~ 1023 (1128) .+|||||+|+||.++|++|...|.+|.+||+...+.+ ..+.+.. ..+ +-..+..++.++++++.... T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178) T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178) T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch Confidence 4699999999999999999999999999997766554 2222221 012 33456788999999998877 Q ss_pred cccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128) ....++ .....++++.++|+++....-+...+.+.|.+..+...-.-|+. T Consensus 82 ~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g 131 (178) T d1pgja2 82 TDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG 131 (178) T ss_dssp HHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES T ss_pred hhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC Confidence 777764 66888999999999999999999999999998887665444443 |
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727] Probab=98.11 E-value=3.3e-06 Score=82.39 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=72.9 Q ss_pred cCCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHH Q psy13054 954 LKGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQ 1032 (1128) Q Consensus 954 L~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~ 1032 (1128) ..-++|+||| +|.||+.+|++|+..|.+|.+||..... ..++.++.+|++++++|.. .+..++ .+. T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~-~~~~v~-~~~ 73 (152) T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------VAESILANADVVIVSVPIN-LTLETI-ERL 73 (152) T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------GHHHHHTTCSEEEECSCGG-GHHHHH-HHH T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------ccchhhhhccccccccchh-hheeee-ecc Confidence 4557999999 9999999999999999999999865432 2456788999999999943 444443 578 Q ss_pred HccCCCCcEEEEcCCCcccCHHHHHHHH Q psy13054 1033 FSLMKPTAILVNTSRGGLLDQEALVEFL 1060 (1128) Q Consensus 1033 l~~mk~ga~lIN~aRG~lVde~aL~~aL 1060 (1128) +..+++++++|+++.-..--.+++.+.+ T Consensus 74 ~~~~~~~~iiiD~~Svk~~~~~~~~~~~ 101 (152) T d2pv7a2 74 KPYLTENMLLADLTSVKREPLAKMLEVH 101 (152) T ss_dssp GGGCCTTSEEEECCSCCHHHHHHHHHHC T ss_pred cccccCCceEEEecccCHHHHHHHHHHc Confidence 8899999999999976544444444443 |
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831] Probab=98.07 E-value=3.7e-06 Score=86.36 Aligned_cols=109 Identities=19% Similarity=0.241 Sum_probs=86.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcccChHhhhc-cCCEEEEecCCCcccccccCH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLVPLDTLCA-ESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~~l~ell~-~sDvV~l~lPlt~~T~~li~~ 1030 (1128) .|.||||+|-|+|++|+.+|+.|..+|++|+++|....... ....+.+..+.++++. .|||++-|. +.+.|++ T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-----~~~~I~~ 98 (201) T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-----MGGVITT 98 (201) T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-----CSCCBCH T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-----ccccccH Confidence 48999999999999999999999999999999987655443 5566788889999877 689988553 4478999 Q ss_pred HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1031 KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) +..++++- -+++.-+.+.+.+++ .-+.|+++.|..+ T Consensus 99 ~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI~~i 134 (201) T d1c1da1 99 EVARTLDC-SVVAGAANNVIADEA-ASDILHARGILYA 134 (201) T ss_dssp HHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTCEEC T ss_pred HHHhhhhh-heeeccCCCCcchhh-HHHHhcccceEEE Confidence 99999974 466777788877664 4567777766443 |
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085] Probab=98.04 E-value=7e-06 Score=82.43 Aligned_cols=93 Identities=18% Similarity=0.271 Sum_probs=74.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc----------------------------- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV----------------------------- 1002 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~----------------------------- 1002 (1128) .+..-+|.|||.|..|..-++.++++|+.|.++|.+..+.+ .++.+.++. T Consensus 26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183) T d1l7da1 26 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183) T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH T ss_pred CcCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH Confidence 56677999999999999999999999999999998887655 444443222 Q ss_pred -ChHhhhccCCEEEE--ecCCCcccccccCHHHHccCCCCcEEEEcC Q psy13054 1003 -PLDTLCAESDFIFV--TCALTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1003 -~l~ell~~sDvV~l--~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .+.+.+++||+|+. ..|.. ..-.+|+++.++.||||+++|+++ T Consensus 106 ~~l~~~l~~aDlVI~talipG~-~aP~lit~~mv~~Mk~GSVIVDva 151 (183) T d1l7da1 106 EAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLA 151 (183) T ss_dssp HHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETT T ss_pred HHHHHHHHhhhhheeeeecCCc-ccceeehHHHHHhcCCCcEEEEEe Confidence 13456889999994 45533 355699999999999999999995 |
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060] Probab=98.01 E-value=4.5e-06 Score=82.76 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=89.4 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcC---Cc-----ccChHhhhccCCEEEEecC-CCc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALG---AQ-----LVPLDTLCAESDFIFVTCA-LTK 1022 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g---~~-----~~~l~ell~~sDvV~l~lP-lt~ 1022 (1128) .....+|.|||.|..|..-++.++++|++|.++|.+..+.+ .+... .. ...+++.+++||+|+.++- -.. T Consensus 29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168) T d1pjca1 29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168) T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS T ss_pred CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc Confidence 56788999999999999999999999999999998876554 22211 11 1247889999999997653 245 Q ss_pred ccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeE Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCV 1091 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvi 1091 (1128) .+-++|.++.++.||||+++|+++=- +| |. +-...|...++|.+...+|+ T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVDvaid-------------qG---G~---~Ets~ptt~~~p~~~~~gV~ 158 (168) T d1pjca1 109 RAPILVPASLVEQMRTGSVIVDVAVD-------------QG---GC---VETLHPTSHTQPTYEVFGVV 158 (168) T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT-------------TC---CS---BTTCCCCCSSSCEEEETTEE T ss_pred ccCeeecHHHHhhcCCCcEEEEeecC-------------CC---Cc---cccCCCCcccCCeEEECCEE Confidence 56789999999999999999999632 22 22 12235666666777766665 |
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336] Probab=97.97 E-value=9.6e-07 Score=86.23 Aligned_cols=87 Identities=15% Similarity=0.081 Sum_probs=60.1 Q ss_pred EEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHHccC Q psy13054 959 VGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 1036 (1128) Q Consensus 959 vGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~m 1036 (1128) |||||+|+||+.+++.|+.-+-.+.+|++...+.. ....+....++.+++++||+|++++|.. .. .+.++.+ T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i-----~~v~~~l 75 (153) T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YI-----KTVANHL 75 (153) T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-TH-----HHHHTTT T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hh-----hHHHhhh Confidence 79999999999999999774443357876655544 3344555668999999999999999953 33 2455666 Q ss_pred -CCCcEEEEcCCCccc Q psy13054 1037 -KPTAILVNTSRGGLL 1051 (1128) Q Consensus 1037 -k~ga~lIN~aRG~lV 1051 (1128) +++.++|+++-+... T Consensus 76 ~~~~~ivi~~s~~~~~ 91 (153) T d2i76a2 76 NLGDAVLVHCSGFLSS 91 (153) T ss_dssp CCSSCCEEECCSSSCG T ss_pred cccceeeeecccchhh Confidence 479999999877654 |
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663] Probab=97.97 E-value=5.5e-06 Score=82.46 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=76.6 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcC---------------Cc-ccChHhhhccCCEEEEec Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALG---------------AQ-LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g---------------~~-~~~l~ell~~sDvV~l~l 1018 (1128) .||++|||.|.+|..+|..|...|.+|.+|+++..+.+ ..+.+ .. ..++.|.++.+|+|++++ T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184) T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE Confidence 38999999999999999999999999999987654333 22211 01 136889999999999999 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCC Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~ 1064 (1128) | ...++.++. +.-..++++.++|- .-|....+..+.+.+.... T Consensus 81 ~-~~~~~~~~~-~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~ 123 (184) T d1bg6a2 81 P-AIHHASIAA-NIASYISEGQLIIL-NPGATGGALEFRKILRENG 123 (184) T ss_dssp C-GGGHHHHHH-HHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTT T ss_pred c-hhHHHHHHH-HhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhc Confidence 9 445555553 45667889998774 4454455555666666544 |
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287] Probab=97.87 E-value=5.5e-06 Score=82.11 Aligned_cols=95 Identities=21% Similarity=0.186 Sum_probs=77.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCCCcccccccCH Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~ 1030 (1128) -|.+|+|+|||||.=|++=|..|+--|++|++--+...+.. +++.|++..+++|..++||+|.+.+|.. .-..+++. T Consensus 13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD~-~q~~vy~~ 91 (182) T d1np3a2 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDE-FQGRLYKE 91 (182) T ss_dssp HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHH-HHHHHHHH T ss_pred HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecchH-HHHHHHHH Confidence 58899999999999999999999999999887654443332 6677999999999999999999999933 33457777 Q ss_pred HHHccCCCCcEEEEcCCCc Q psy13054 1031 KQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~aRG~ 1049 (1128) +....||+|+.+. .++|- T Consensus 92 ~I~p~lk~g~~L~-FaHGf 109 (182) T d1np3a2 92 EIEPNLKKGATLA-FAHGF 109 (182) T ss_dssp HTGGGCCTTCEEE-ESCCH T ss_pred hhhhhcCCCcEEE-Eeccc Confidence 8999999999885 34544 |
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320] Probab=97.86 E-value=1e-05 Score=79.90 Aligned_cols=94 Identities=21% Similarity=0.266 Sum_probs=68.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcCCccc---ChHhhhccCCEEEEecCCCccccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALGAQLV---PLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g~~~~---~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .+.++++.|||+|.||+.+++.|...|+ ++.++++...+.. ....+.... ++.+.+.++|+|+.+.+ .... T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats---s~~~ 97 (159) T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHP 97 (159) T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSC T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC---CCCc Confidence 4789999999999999999999999998 5778876655554 445565543 56678889999999877 3345 Q ss_pred ccCHHHHccC------CCCcEEEEcCCCc Q psy13054 1027 LIGRKQFSLM------KPTAILVNTSRGG 1049 (1128) Q Consensus 1027 li~~~~l~~m------k~ga~lIN~aRG~ 1049 (1128) +|+++.++.. ++..++|+.|... T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiDlavPr 126 (159) T d1gpja2 98 VIHVDDVREALRKRDRRSPILIIDIANPR 126 (159) T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCSSC T ss_pred cccHhhhHHHHHhcccCCCeEEEeecCCC Confidence 7888777532 2334666655443 |
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371] Probab=97.75 E-value=1.2e-06 Score=81.57 Aligned_cols=93 Identities=16% Similarity=0.120 Sum_probs=69.6 Q ss_pred CcccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh---hhhcCCccc---ChHhhhccCCEEEEecCCCc Q psy13054 949 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE---GTALGAQLV---PLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 949 ~~~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~---~~~~g~~~~---~l~ell~~sDvV~l~lPlt~ 1022 (1128) |.+.+++||+|+|||.|.+|.+-|+.|..+|++|+++++...... ..+..++.. --++.+..+++|+.+.. ++ T Consensus 5 Pi~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~-d~ 83 (113) T d1pjqa1 5 PIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD-DD 83 (113) T ss_dssp EEEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-CH T ss_pred ceEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCC-CH Confidence 345589999999999999999999999999999999988776553 122233321 22346777888886544 32 Q ss_pred ccccccCHHHHccCCCCcEEEEcC Q psy13054 1023 DTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1023 ~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) -+|++..+.+|+..++||++ T Consensus 84 ----~~n~~i~~~a~~~~ilVNv~ 103 (113) T d1pjqa1 84 ----TVNQRVSDAAESRRIFCNVV 103 (113) T ss_dssp ----HHHHHHHHHHHHTTCEEEET T ss_pred ----HHHHHHHHHHHHcCCEEEeC Confidence 35778888899999999974 |
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833] Probab=97.65 E-value=2.7e-05 Score=76.53 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=63.7 Q ss_pred hhHhHhhhccCCceeeeeeCCCCCCCCccccccCCccccceeecccccccccccccCCcccCHHHHhhcCCEEEEecCCC Q psy13054 252 LSSEINNSLKGSDIFEFFLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERSNGTALGAQLVPLDTLCAESDFIFVTCALT 331 (1128) Q Consensus 252 ig~~va~~l~g~~~~~~ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~~~~~~g~~~vsLdeLl~~SDiVslh~PLT 331 (1128) +|+.+|++++|++..+. +...|+...-++.-.|++.++++|+++.+|+++..+ T Consensus 34 vGrG~A~~~rg~Ga~V~------------------------V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaT--- 86 (163) T d1v8ba1 34 VGKGCASSMKGLGARVY------------------------ITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT--- 86 (163) T ss_dssp HHHHHHHHHHHHTCEEE------------------------EECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC--- T ss_pred cchhHHHHHHhCCCEEE------------------------EEecCchhhHHHHhcCCccCchhHccccCcEEEEcC--- Confidence 57778888887654322 222233222223334788889999999999999865 Q ss_pred cccccccCHHHHhcCCCCcEEEEecCCCc-cCHHHHH Q psy13054 332 KDTEQLIGRKQFSLMKPTAILINTSRGGL-LDQEALV 367 (1128) Q Consensus 332 ~~T~~lIn~~~l~~MK~gaiLINtaRG~l-VDe~AL~ 367 (1128) ..+++|+.+.|++||+|+|+-|++.-.. ||-++|. T Consensus 87 -Gn~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~ 122 (163) T d1v8ba1 87 -GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELF 122 (163) T ss_dssp -SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHH T ss_pred -CCCccccHHHHHHhhCCeEEEeccccchhhhhHHHH Confidence 5677999999999999999999998753 5665554 |
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487] Probab=97.63 E-value=1.6e-05 Score=77.63 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=71.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC-CEEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCCCcccccccCHHHH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQF 1033 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l 1033 (1128) .+|||||+|+||+++++.|..-| .+|.+||++.++.+ ..+.++...+-.+.+++||+|+++++ ..... +.+ T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk-P~~~~-----~v~ 74 (152) T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK-PQDME-----AAC 74 (152) T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC-HHHHH-----HHH T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC-HHHHH-----HhH Confidence 37999999999999999875555 89999987765544 34567766654455678999999997 22332 334 Q ss_pred ccC-CCCcEEEEcCCCcccCHHHHHHHHhc-CCceEE Q psy13054 1034 SLM-KPTAILVNTSRGGLLDQEALVEFLKD-KKIGGA 1068 (1128) Q Consensus 1034 ~~m-k~ga~lIN~aRG~lVde~aL~~aL~~-g~i~ga 1068 (1128) +.+ +.+.++|++.-|- ..+.+.+.|.. .++..+ T Consensus 75 ~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~ 109 (152) T d1yqga2 75 KNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVRV 109 (152) T ss_dssp TTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEEE T ss_pred HHHhhcccEEeecccCC--CHHHHHHHhCcCcceEee Confidence 444 3478999988775 45667777743 344443 |
>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562] Probab=97.48 E-value=7e-05 Score=76.47 Aligned_cols=94 Identities=26% Similarity=0.294 Sum_probs=70.7 Q ss_pred ccCC-CeEEEEEcChhhHHHHHHHhh------CCCEEEEEeCCCCch-h-hhhcCCc-----ccChHhhhccCCEEEEec Q psy13054 953 GLKG-ATVGIVGLGNIGLETAKLLKA------FKVSKILYTSRRVKE-E-GTALGAQ-----LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~g-ktvGIIG~G~IG~~vA~~l~a------fG~~Vi~~d~~~~~~-~-~~~~g~~-----~~~l~ell~~sDvV~l~l 1018 (1128) -+.| |+|+|||||.-|++=|..|+- .|.+|++--+..++. . +++.|++ ..+.+|..++||+|.+.+ T Consensus 40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl 119 (226) T d1qmga2 40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI 119 (226) T ss_dssp HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS T ss_pred HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec Confidence 4678 999999999999999999998 556676554333332 2 6667775 347899999999999999 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) |..-+ ..+++ +....||+|+.+.= |.|= T Consensus 120 PDe~Q-~~vy~-~I~p~Lk~G~~L~F-aHGF 147 (226) T d1qmga2 120 SDSAQ-ADNYE-KVFSHMKPNSILGL-SHGF 147 (226) T ss_dssp CHHHH-HHHHH-HHHHHSCTTCEEEE-SSSH T ss_pred chHHH-HHHHH-HHHHhcCCCceeee-cchh Confidence 95444 34664 78899999998753 4553 |
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287] Probab=97.32 E-value=0.0007 Score=68.66 Aligned_cols=147 Identities=18% Similarity=0.088 Sum_probs=92.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhh--------------------c-CCc-ccChHhhhccCCEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTA--------------------L-GAQ-LVPLDTLCAESDFI 1014 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~--------------------~-g~~-~~~l~ell~~sDvV 1014 (1128) .+|+|||+|.+|.++|-.+...|.+|++||.....-..-. . ... ..++++.+..||++ T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202) T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202) T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE Confidence 3699999999999999999999999999997543211000 0 111 23678889999999 Q ss_pred EEecCCCccccc---------ccCH--HHHccCCCCcEEEEcCCCcccCHHHHHHHH-hc--CCceEEEEe-ccCCCCCC Q psy13054 1015 FVTCALTKDTEQ---------LIGR--KQFSLMKPTAILVNTSRGGLLDQEALVEFL-KD--KKIGGAGLD-VMIPEPLP 1079 (1128) Q Consensus 1015 ~l~lPlt~~T~~---------li~~--~~l~~mk~ga~lIN~aRG~lVde~aL~~aL-~~--g~i~gaaLD-V~e~EPl~ 1079 (1128) ++|+|......+ .++. ..+...+++.++|..|.-.+=..+.+...+ ++ +...+--+. +|-+|=+. T Consensus 81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~ 160 (202) T d1mv8a2 81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR 160 (202) T ss_dssp EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC T ss_pred EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhc Confidence 999994211111 1111 345567789999999888776676665443 21 111110111 27788777 Q ss_pred CCCccc---cCCCeEECCCCCCCcHHHHHHH Q psy13054 1080 ADHPLV---QLDNCVLTPHTSSATKAVRDEK 1107 (1128) Q Consensus 1080 ~~~pL~---~~pNvilTPHiag~t~e~~~~~ 1107 (1128) +.+.++ ..|.+++ |+.+.++.+.+ T Consensus 161 ~G~a~~d~~~~~~iVi----G~~~~~~~~~~ 187 (202) T d1mv8a2 161 ESTAIKDYDFPPMTVI----GELDKQTGDLL 187 (202) T ss_dssp TTSHHHHHHSCSCEEE----EESSHHHHHHH T ss_pred ccchhhhhcCCCeEEE----EeCCHHHHHHH Confidence 666554 3455554 45555555443 |
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562] Probab=97.30 E-value=0.00013 Score=65.10 Aligned_cols=71 Identities=20% Similarity=0.190 Sum_probs=51.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhh--hcCCcc--cC-hHhhhccCCEEEEecCCCccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT--ALGAQL--VP-LDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~--~~g~~~--~~-l~ell~~sDvV~l~lPlt~~T 1024 (1128) ++.||+|.|+|+|..|+.+|+.|...|++|.++|.+....... ..+... .. -++.+.+.|+|++. |.-+.+ T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S-PGi~~~ 77 (93) T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS-PGIALA 77 (93) T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC-TTSCTT T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC-CCCCCC Confidence 4789999999999999999999999999999999876644311 122221 12 24567888988873 444433 |
>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314] Probab=97.12 E-value=0.0021 Score=64.39 Aligned_cols=154 Identities=12% Similarity=0.159 Sum_probs=99.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcC-------------------Cc-ccChHhhhccCCEEEE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGTALG-------------------AQ-LVPLDTLCAESDFIFV 1016 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g-------------------~~-~~~l~ell~~sDvV~l 1016 (1128) .+|+|||+|.+|.++|..+ +.|.+|++||.....-.....| .. ..+..+...++|++++ T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196) T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196) T ss_dssp CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE T ss_pred CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc Confidence 3799999999999999877 5799999999765432211111 11 1245566789999999 Q ss_pred ecCCCccccc-ccCH-------HHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCcccc-- Q psy13054 1017 TCALTKDTEQ-LIGR-------KQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQ-- 1086 (1128) Q Consensus 1017 ~lPlt~~T~~-li~~-------~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~-- 1086 (1128) ++|......+ ..+- +.+...+++.++|.-+.-.+=..+.+..-+.+.++ +|-||-+.+.+.+++ T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~------~~~PE~i~~G~ai~d~~ 153 (196) T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRI------IFSPEFLRESKALYDNL 153 (196) T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCE------EECCCCCCTTSTTHHHH T ss_pred cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhh------ccchhhcchhhhHhhcc Confidence 9996544332 2211 22344577888988888887788888887777654 367888877776654 Q ss_pred -CCCeEECCCCCCCcHHHHHHHHHHHHHHHHHHH Q psy13054 1087 -LDNCVLTPHTSSATKAVRDEKSSTSAENIIRGY 1119 (1128) Q Consensus 1087 -~pNvilTPHiag~t~e~~~~~~~~~~~nl~~~l 1119 (1128) .|.+++--+-... ....+..+.+.+.+.+.. T Consensus 154 ~p~riv~G~~~~~~--~~~~~~~~~~~~l~~~~~ 185 (196) T d1dlja2 154 YPSRIIVSCEENDS--PKVKADAEKFALLLKSAA 185 (196) T ss_dssp SCSCEEEECCTTSC--HHHHHHHHHHHHHHHHHC T ss_pred CCCEEEEeCCHhhH--HHHHHHHHHHHHHHHhhh Confidence 4666655442221 233445556666665543 |
>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562] Probab=97.11 E-value=0.00062 Score=67.05 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=90.8 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) ++.||++.|||-+. +|+++|..|..-|++|..++.+.. ++.+.+++||+|+.++... ++|..+ T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~------------~l~~~~~~ADivI~a~G~p----~~i~~~ 97 (166) T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK------------NLRHHVENADLLIVAVGKP----GFIPGD 97 (166) T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS------------CHHHHHHHCSEEEECSCCT----TCBCTT T ss_pred ccccceEEEEeccccccHHHHHHHHHhhccccccccccc------------hhHHHHhhhhHhhhhccCc----cccccc Confidence 68999999999987 899999999999999988865442 5678889999999999844 678765 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) ..|+|+++|+++--.+ ++|++- -||..+ =..-.--.+||=-||.-.-+..-+.+-+ T Consensus 98 ---~vk~g~vvIDvGi~~~----------~~~~~~---Gdvd~~--------~v~~~a~~~TPvPGGVGP~Tva~L~~N~ 153 (166) T d1b0aa1 98 ---WIKEGAIVIDVGINRL----------ENGKVV---GDVVFE--------DAAKRASYITPVPGGVGPMTVATLIENT 153 (166) T ss_dssp ---TSCTTCEEEECCCEEC----------TTSCEE---CSBCHH--------HHHHHCSEECCSSSSSHHHHHHHHHHHH T ss_pred ---ccCCCcEEEecCceec----------CCCCEE---eccccH--------hHHhheeEeCCCCCcccHHHHHHHHHHH Confidence 5589999999975443 224432 233211 1111123699998888666665555555 Q ss_pred HHHHHHHHc Q psy13054 1112 AENIIRGYK 1120 (1128) Q Consensus 1112 ~~nl~~~l~ 1120 (1128) ++..+++.+ T Consensus 154 v~a~~~~~~ 162 (166) T d1b0aa1 154 LQACVEYHD 162 (166) T ss_dssp HHHHHHTTS T ss_pred HHHHHHHhC Confidence 555555554 |
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421] Probab=97.05 E-value=0.00068 Score=70.36 Aligned_cols=108 Identities=17% Similarity=0.235 Sum_probs=83.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCcccChHhhh-ccCCEEEEecCCCcccccccC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLVPLDTLC-AESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~~l~ell-~~sDvV~l~lPlt~~T~~li~ 1029 (1128) +|.|+||.|-|+|++|+.+|+.|...|++|++.|....... ....+....+.++++ ..|||++-|.- .+.|+ T Consensus 36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~-----~~~I~ 110 (230) T d1leha1 36 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCAL-----GAVLN 110 (230) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSC-----SCCBS T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEeccccc-----ccccC Confidence 58999999999999999999999999999999886654433 344577777888765 45999996643 46788 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) .+...+++- -++|-.+...+.+.++- +.|.+..|.. T Consensus 111 ~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~~ 146 (230) T d1leha1 111 DFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIVY 146 (230) T ss_dssp TTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCEE T ss_pred hHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcEE Confidence 888888874 57788888888887664 5566666644 |
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606] Probab=97.04 E-value=0.00031 Score=71.03 Aligned_cols=104 Identities=9% Similarity=0.072 Sum_probs=76.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hcC------------------Ccc-cChH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------ALG------------------AQL-VPLD 1005 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~g------------------~~~-~~l~ 1005 (1128) |+|+|||.|.||+.+|..+...|++|++||+.....+ +. +.+ +.. .++. T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192) T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH Confidence 6899999999999999999999999999997764321 00 011 111 2678 Q ss_pred hhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhc Q psy13054 1006 TLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKD 1062 (1128) Q Consensus 1006 ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~ 1062 (1128) +.++.+|+|+=++|.+-+.+.=+=++.=+.++++++|...+.+- ....|.+.+.. T Consensus 85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~ 139 (192) T d1f0ya2 85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTR 139 (192) T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSC T ss_pred hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhccC Confidence 88999999999999888877654455556679999887665544 34556666544 |
>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] Probab=96.94 E-value=0.00083 Score=66.55 Aligned_cols=94 Identities=14% Similarity=0.072 Sum_probs=66.9 Q ss_pred ccccCCCeEEEEEcChh-hHHHHHHHhhCCCEEEEEeCCCCchhhhhcCC-------------cccChHhhhccCCEEEE Q psy13054 951 IMGLKGATVGIVGLGNI-GLETAKLLKAFKVSKILYTSRRVKEEGTALGA-------------QLVPLDTLCAESDFIFV 1016 (1128) Q Consensus 951 ~~~L~gktvGIIG~G~I-G~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~-------------~~~~l~ell~~sDvV~l 1016 (1128) ..++.||++.|||-++| |+++|.+|..-|+.|..++............. +...+.+...++|+|+. T Consensus 24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIs 103 (171) T d1edza1 24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 103 (171) T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE T ss_pred cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEE Confidence 34799999999999875 99999999999999988875543211010000 11136778889999999 Q ss_pred ecCCCcccccc-cCHHHHccCCCCcEEEEcCCCccc Q psy13054 1017 TCALTKDTEQL-IGRKQFSLMKPTAILVNTSRGGLL 1051 (1128) Q Consensus 1017 ~lPlt~~T~~l-i~~~~l~~mk~ga~lIN~aRG~lV 1051 (1128) .+|.. ++ +..+ ..|+|+++||+|-.... T Consensus 104 avG~p----~~~i~~d---~ik~GavvIDvGi~~~~ 132 (171) T d1edza1 104 GVPSE----NYKFPTE---YIKEGAVCINFACTKNF 132 (171) T ss_dssp CCCCT----TCCBCTT---TSCTTEEEEECSSSCCB T ss_pred ccCCC----ccccChh---hcccCceEeeccccccc Confidence 99854 22 4432 45899999999966533 |
>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606] Probab=96.93 E-value=0.0014 Score=64.83 Aligned_cols=133 Identities=19% Similarity=0.244 Sum_probs=86.6 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) +++||++.|||-+. +|+++|..|..-|++|..++.... ++.+..++||+|+.+++.. +++..+ T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~------------~l~~~~~~aDivi~a~G~~----~~i~~~ 99 (170) T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA------------HLDEEVNKGDILVVATGQP----EMVKGE 99 (170) T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------------SHHHHHTTCSEEEECCCCT----TCBCGG T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEecccc------------cHHHHHhhccchhhccccc----cccccc Confidence 68999999999976 899999999999999999875443 4567888999999998854 567754 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHHH Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSSTS 1111 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~~ 1111 (1128) ..|+|+++|+++--.+.|.... ..+++.| ||-.++ . ...--.+||==||--.-+..-+.+-+ T Consensus 100 ---~vk~g~iviDvgi~~~~~~~~~----~~~~~~g---dvd~~~-------v-~~~a~~~TPvPGGVGp~Tva~L~~N~ 161 (170) T d1a4ia1 100 ---WIKPGAIVIDCGINYVPDDKKP----NGRKVVG---DVAYDE-------A-KERASFITPVPGGVGPMTVAMLMQST 161 (170) T ss_dssp ---GSCTTCEEEECCCBC--------------CCBC---SBCHHH-------H-TTTCSEECCSSSSHHHHHHHHHHHHH T ss_pred ---cccCCCeEeccCcccccccccC----CCCEEec---ccchHh-------h-hhhceEeCCCCCchhHHHHHHHHHHH Confidence 5689999999986655443321 2334432 332111 1 11233589976665555554444555 Q ss_pred HHHHHHHH Q psy13054 1112 AENIIRGY 1119 (1128) Q Consensus 1112 ~~nl~~~l 1119 (1128) ++--++|+ T Consensus 162 v~a~~r~l 169 (170) T d1a4ia1 162 VESAKRFL 169 (170) T ss_dssp HHHHHHHH T ss_pred HHHHHHhh Confidence 55555554 |
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562] Probab=96.90 E-value=0.00057 Score=66.17 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=66.2 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCC--------cccChHhhhccCCEEEEecCCCcccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGA--------QLVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~--------~~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) .+|+|||.|.||..+|..|...|.+|.++++...... ....+. ...+..+.+..+|+|+++++ ..++... T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk-a~~~~~~ 79 (167) T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLK-AWQVSDA 79 (167) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSC-GGGHHHH T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeec-ccchHHH Confidence 4799999999999999999999999999987665433 111111 11256677889999999999 4566655 Q ss_pred cCHHHHccCCCCcEEEEcCCC Q psy13054 1028 IGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG 1048 (1128) +. ..-..+++++.++...-| T Consensus 80 ~~-~l~~~~~~~~~Iv~~qNG 99 (167) T d1ks9a2 80 VK-SLASTLPVTTPILLIHNG 99 (167) T ss_dssp HH-HHHTTSCTTSCEEEECSS T ss_pred HH-hhccccCcccEEeeccCc Confidence 42 344566788888888766 |
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423] Probab=96.90 E-value=0.0003 Score=66.29 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=53.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc--------cChHhh-hccCCEEEEecCCCcccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL--------VPLDTL-CAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~--------~~l~el-l~~sDvV~l~lPlt~~T~ 1025 (1128) |++.|+|+|++|+.+|+.|...|.+|+++|....... ..+.+... ..|+++ +.++|.|++++|...++. T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~ 79 (134) T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS 79 (134) T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH Confidence 6789999999999999999999999999998766544 33344322 124454 789999999999766554 |
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296] Probab=96.85 E-value=0.00024 Score=71.55 Aligned_cols=103 Identities=15% Similarity=0.091 Sum_probs=75.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh-----------hcC-------------CcccChHhhhccC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT-----------ALG-------------AQLVPLDTLCAES 1011 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~-----------~~g-------------~~~~~l~ell~~s 1011 (1128) ++|+|||.|.||+.+|..+...|++|++||+.....+ .. ..+ +...+..+.+..+ T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 84 (186) T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV 84 (186) T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc Confidence 5799999999999999999999999999997654322 10 001 1112223457899 Q ss_pred CEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHh Q psy13054 1012 DFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLK 1061 (1128) Q Consensus 1012 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~ 1061 (1128) |+|+-+.|.+.+.+.=+=++.-+.++++++|...+.+-.+ ..|.+.++ T Consensus 85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~ 132 (186) T d1wdka3 85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALK 132 (186) T ss_dssp SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCS T ss_pred ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhcc Confidence 9999999999888775556777788999999877666544 55666654 |
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562] Probab=96.65 E-value=0.00058 Score=60.66 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=36.1 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128) +++||++.|+|+|..|+.+|+.|...|++|++||.+..++ T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~ 41 (93) T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP 41 (93) T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCT T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCch Confidence 5799999999999999999999999999999999855433 |
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234] Probab=96.63 E-value=0.00093 Score=66.55 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=62.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhh---h------cCC-------c-ccChHhhhccCCEEEEecC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT---A------LGA-------Q-LVPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~---~------~g~-------~-~~~l~ell~~sDvV~l~lP 1019 (1128) .+|+|||.|.+|.++|..|..-|.+|.+|.+..+..... . .+. . ..+++++++.||+|++++| T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180) T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180) T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc Confidence 479999999999999999998899999996533321111 0 000 1 2368899999999999999 Q ss_pred CCcccccccCHHHHccCCCCcEEEEcCCCcc Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTSRGGL 1050 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~aRG~l 1050 (1128) ....+.++. +....+++. .+|..+.|.. T Consensus 81 -s~~~~~~~~-~l~~~l~~~-~ii~~tkg~~ 108 (180) T d1txga2 81 -TDGVLPVMS-RILPYLKDQ-YIVLISKGLI 108 (180) T ss_dssp -GGGHHHHHH-HHTTTCCSC-EEEECCCSEE T ss_pred -hhhhHHHHH-hhccccccc-eecccccCcc Confidence 455565554 344445555 5555666654 |
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] Probab=96.39 E-value=0.0016 Score=63.84 Aligned_cols=90 Identities=27% Similarity=0.282 Sum_probs=66.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-------C-hHhhhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-------P-LDTLCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-------~-l~ell~~sDvV~l~lPlt~~T~ 1025 (1128) .|.+|.|+|.|.+|...++.++.+|++|++.+.+..+.+ +++.|+..+ + .++.....|+++.+....... T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~- 105 (168) T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI- 105 (168) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC- T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc- Confidence 588999999999999999999999999999998777665 666665321 1 234455679888876643221 Q ss_pred cccCHHHHccCCCCcEEEEcCC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .+ ...++.++++..+++++- T Consensus 106 -~~-~~~~~~l~~~G~iv~~G~ 125 (168) T d1piwa2 106 -DF-NIMPKAMKVGGRIVSISI 125 (168) T ss_dssp -CT-TTGGGGEEEEEEEEECCC T ss_pred -hH-HHHHHHhhccceEEEecc Confidence 12 246778889999988863 |
>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665] Probab=96.25 E-value=0.00044 Score=69.71 Aligned_cols=91 Identities=10% Similarity=0.112 Sum_probs=63.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hh--hc------C------Ccc-cChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GT--AL------G------AQL-VPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~--~~------g------~~~-~~l~ell~~sDvV~l~lPl 1020 (1128) ++|+|||.|..|.++|..|..-|.+|.+|+++..... .. .. + +.. .+++++++.+|+|++++| T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP- 86 (189) T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP- 86 (189) T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC- T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc- Confidence 5799999999999999999999999999985433221 10 00 1 111 268999999999999999 Q ss_pred CcccccccCHH---H-HccCCCCcEEEEcCCC Q psy13054 1021 TKDTEQLIGRK---Q-FSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1021 t~~T~~li~~~---~-l~~mk~ga~lIN~aRG 1048 (1128) +...+.++..- . -...+++..+|+++-| T Consensus 87 s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG 118 (189) T d1n1ea2 87 TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG 118 (189) T ss_dssp HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS T ss_pred HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC Confidence 44444444221 0 1123567889999877 |
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718] Probab=96.21 E-value=0.0017 Score=63.85 Aligned_cols=65 Identities=25% Similarity=0.367 Sum_probs=47.5 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchhhhhcCC-cccChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEEGTALGA-QLVPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~~~~~g~-~~~~l~ell~~sDvV~l~lPlt~ 1022 (1128) -+|||||+|.||+.+++.++.. +++++++.++..... ...+. ...+.++++.+.|+|++++|... T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~-~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~ 70 (170) T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-TKTPVFDVADVDKHADDVDVLFLCMGSAT 70 (170) T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-SSSCEEEGGGGGGTTTTCSEEEECSCTTT T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc-cccccccchhhhhhccccceEEEeCCCcc Confidence 4799999999999999999876 778776554443322 11222 23477888899999999999653 |
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831] Probab=96.10 E-value=0.0056 Score=62.04 Aligned_cols=35 Identities=29% Similarity=0.364 Sum_probs=33.5 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) +|+||||+|-|+|++|+.+|+.|..+|++++++|. T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~ 58 (201) T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT 58 (201) T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc Confidence 58999999999999999999999999999999986 |
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562] Probab=96.04 E-value=0.0053 Score=60.23 Aligned_cols=95 Identities=16% Similarity=0.129 Sum_probs=64.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhh---c-CCcccChHhh-hccCCEEEEecCCCcccc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTA---L-GAQLVPLDTL-CAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~---~-g~~~~~l~el-l~~sDvV~l~lPlt~~T~ 1025 (1128) .+.||+|.|+|.|..+++++.-|...|+++.+++++..+.+ ... . .+...++++. ..++|+|+++.|..-... T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~~~ 94 (170) T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGD 94 (170) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTC T ss_pred CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcccC Confidence 47899999999999999999999999999999987765543 111 1 1233455543 467999999999764322 Q ss_pred cccCHHHHccCCCCcEEEEcCCCc Q psy13054 1026 QLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) ...-.+..++++++++++--.. T Consensus 95 --~~~~~~~~~~~~~~v~D~vY~P 116 (170) T d1nyta1 95 --IPAIPSSLIHPGIYCYDMFYQK 116 (170) T ss_dssp --CCCCCGGGCCTTCEEEESCCCS T ss_pred --CCCCcHHHhccCcEEEEeecCC Confidence 1111234466666666664444 |
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305] Probab=95.95 E-value=0.0032 Score=60.98 Aligned_cols=87 Identities=16% Similarity=0.132 Sum_probs=60.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhcCC--------cc-cChHhhhccCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTALGA--------QL-VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~--------~~-~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) .+|+|.|||+|.||+.+|+.|..-|.+|+++|+...+.. ....+. .. ..+++.+...|+++.++|.... T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 80 (182) T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH 80 (182) T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh Confidence 368999999999999999999999999999998877655 222221 11 2456778899999988885432 Q ss_pred cccccCHHHHccCCCCcEEEEcC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .. ......+.+..++.++ T Consensus 81 ~~-----~~~~~~~~~~~~~~~~ 98 (182) T d1e5qa1 81 AT-----VIKSAIRQKKHVVTTS 98 (182) T ss_dssp HH-----HHHHHHHHTCEEECSS T ss_pred hH-----HHHHHHhhccceeecc Confidence 11 1123334556666665 |
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371] Probab=95.95 E-value=0.00092 Score=65.23 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=75.6 Q ss_pred eeCCCCCCCCccccccCCccccceeecccccccc--cccccCCcc-cCHHHHhhcCCEEEEecCCCcccccccC--HHHH Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS--NGTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQLIG--RKQF 343 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~--~~~~~g~~~-vsLdeLl~~SDiVslh~PLT~~T~~lIn--~~~l 343 (1128) ++|+|.+|+.+|+..... ...+++||+.+.. ...+.+... .+.+|++++||+|++++|-.++.+.++- ...+ T Consensus 5 iIGlG~MG~~~A~~L~~~---G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~ 81 (161) T d1vpda2 5 FIGLGIMGKPMSKNLLKA---GYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGII 81 (161) T ss_dssp EECCSTTHHHHHHHHHHT---TCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHH T ss_pred EEehhHHHHHHHHHHHHC---CCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchh Confidence 678888888887642211 1245666644322 122334433 4899999999999999998888888662 3578 Q ss_pred hcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 344 SLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 344 ~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) ..+++|.++|+.+=..--....+.+.+++..+. T Consensus 82 ~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~ 114 (161) T d1vpda2 82 EGAKPGTVLIDMSSIAPLASREISDALKAKGVE 114 (161) T ss_dssp HHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE T ss_pred hccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc Confidence 899999999999887776777888899887664 |
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277] Probab=95.92 E-value=0.018 Score=59.78 Aligned_cols=108 Identities=26% Similarity=0.329 Sum_probs=77.6 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc---------hh----------------hhhcCCccc-ChHh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK---------EE----------------GTALGAQLV-PLDT 1006 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~---------~~----------------~~~~g~~~~-~l~e 1006 (1128) +|.|+||.|=|+|++|+.+|+.|...|++|+++++.... +. ....+.+.. +.++ T Consensus 28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (242) T d1v9la1 28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA 107 (242) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTG T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcch Confidence 489999999999999999999999999999987754321 00 001122222 3455 Q ss_pred hh-ccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1007 LC-AESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1007 ll-~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ++ ..|||++-|.. .+.|+++...+|+ -.+++-.+-+.+ ..+| .+.|.+..|..+ T Consensus 108 i~~~~~DIliPcA~-----~~~I~~~~a~~i~-ak~IvegAN~p~-t~~a-~~~L~~rgI~~~ 162 (242) T d1v9la1 108 IFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPT-TPEA-ERILYERGVVVV 162 (242) T ss_dssp GGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCB-CHHH-HHHHHTTTCEEE T ss_pred hccccccEEeecch-----hccccHHHHHhcc-cCEEEecCCCCC-ChhH-HHHHHhCCeEEe Confidence 55 47999997754 4577888888886 457888888886 6666 478888877654 |
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606] Probab=95.91 E-value=0.0077 Score=58.75 Aligned_cols=89 Identities=19% Similarity=0.274 Sum_probs=64.9 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHhhh--------ccCCEEEEec Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDTLC--------AESDFIFVTC 1018 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell--------~~sDvV~l~l 1018 (1128) .|.+|.|+|.|.||...++.++.+|+ +|++.|+...+.+ +++.|+..+ +..+.. ...|+|+-+. T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171) T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc Confidence 46789999999999999999999999 7888887766655 666776432 333332 2479988877 Q ss_pred CCCcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1019 ALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1019 Plt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) +. +.+ + ...++.++++..++.++-. T Consensus 106 G~-~~~---~-~~a~~~~~~gG~iv~~G~~ 130 (171) T d1pl8a2 106 GA-EAS---I-QAGIYATRSGGTLVLVGLG 130 (171) T ss_dssp CC-HHH---H-HHHHHHSCTTCEEEECSCC T ss_pred CC-chh---H-HHHHHHhcCCCEEEEEecC Confidence 73 332 2 3567788888888887643 |
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371] Probab=95.89 E-value=0.0024 Score=58.51 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=36.4 Q ss_pred ccCCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 695 NIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 695 ~~~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) ...+++||++.|||.|++|.+-|+++..+|+++++|++.. T Consensus 6 i~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~ 45 (113) T d1pjqa1 6 IFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTF 45 (113) T ss_dssp EEECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSC T ss_pred eEEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccC Confidence 3457999999999999999999999999999999998744 |
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336] Probab=95.89 E-value=0.0032 Score=62.25 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=37.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGA 999 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~ 999 (1128) .|.+|.|+|.|.||...++.++.+|+ +|++.+++..+.+ +++.|+ T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182) T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182) T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccccccc Confidence 58999999999999999999999998 7888887666554 455554 |
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562] Probab=95.80 E-value=0.0063 Score=59.05 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=47.0 Q ss_pred eEEEEEcChhhHH-HHHHHhhC-CCEEEE-EeCCCCchh--hhhcCCccc-ChHhhhccCCEEEEecCCC Q psy13054 958 TVGIVGLGNIGLE-TAKLLKAF-KVSKIL-YTSRRVKEE--GTALGAQLV-PLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 958 tvGIIG~G~IG~~-vA~~l~af-G~~Vi~-~d~~~~~~~--~~~~g~~~~-~l~ell~~sDvV~l~lPlt 1021 (1128) +|||||+|.+|+. ....++.. ++++++ +|+...+.. ....++... ++++++++.|+|++++|.. T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~ 72 (164) T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTA 72 (164) T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTT T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccch Confidence 6999999999987 46667655 777765 455554443 345566554 7899999999999999943 |
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855] Probab=95.76 E-value=0.01 Score=57.66 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=61.2 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc--------ChHh---hh-----ccCCEEEEe Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV--------PLDT---LC-----AESDFIFVT 1017 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~--------~l~e---ll-----~~sDvV~l~ 1017 (1128) .|.+|.|+|.|.||...++.++.+|++|+++++...+.+ +++.|.... +.++ .+ ...|+|+-+ T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~ 105 (170) T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 105 (170) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec Confidence 577999999999999999999999999999997766655 555554221 1221 11 236888766 Q ss_pred cCCCcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1018 CALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1018 lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) .. .+.+ + ...++.++++..++.++-. T Consensus 106 ~g-~~~~---~-~~a~~~~~~~G~iv~~G~~ 131 (170) T d1e3ja2 106 SG-NEKC---I-TIGINITRTGGTLMLVGMG 131 (170) T ss_dssp SC-CHHH---H-HHHHHHSCTTCEEEECSCC T ss_pred CC-ChHH---H-HHHHHHHhcCCceEEEecC Confidence 65 3332 1 2346677888888877643 |
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562] Probab=95.71 E-value=0.0048 Score=60.19 Aligned_cols=88 Identities=28% Similarity=0.419 Sum_probs=63.1 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc----C---hHhhhccCCEEEEecCCCccccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV----P---LDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~----~---l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .|.+|.|+|.|.||...++.++++|+++++.+++..+.+ .++.|...+ + ..+..+..|+++.++.... + T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~-~-- 106 (168) T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH-N-- 106 (168) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC-C-- T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch-h-- Confidence 588999999999999999999999999999988776654 566665432 1 2234455788887776332 2 Q ss_pred ccCHHHHccCCCCcEEEEcCC Q psy13054 1027 LIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aR 1047 (1128) + ...+..++++..++.++. T Consensus 107 -~-~~~~~~l~~~G~iv~~G~ 125 (168) T d1uufa2 107 -L-DDFTTLLKRDGTMTLVGA 125 (168) T ss_dssp -H-HHHHTTEEEEEEEEECCC T ss_pred -H-HHHHHHHhcCCEEEEecc Confidence 1 244667777777777653 |
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562] Probab=95.71 E-value=0.0078 Score=55.16 Aligned_cols=76 Identities=14% Similarity=0.161 Sum_probs=52.0 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchhhh--hcC--CcccCh---Hhhhc--cCCEEEEecCCCccc Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGT--ALG--AQLVPL---DTLCA--ESDFIFVTCALTKDT 1024 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~--~~g--~~~~~l---~ell~--~sDvV~l~lPlt~~T 1024 (1128) ..+.||||+|-|..|+.+|.-++.+|.+++++|+....+... +.. ..+.+. .++.. ++|+|+ .|. T Consensus 9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT------~E~ 82 (111) T d1kjqa2 9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIV------PEI 82 (111) T ss_dssp TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEE------ECS T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEE------EEe Confidence 456789999999999999999999999999999887765421 111 112233 34443 469996 344 Q ss_pred ccccCHHHHccC Q psy13054 1025 EQLIGRKQFSLM 1036 (1128) Q Consensus 1025 ~~li~~~~l~~m 1036 (1128) ++ |+.+.|+.+ T Consensus 83 En-I~~~~L~~l 93 (111) T d1kjqa2 83 EA-IATDMLIQL 93 (111) T ss_dssp SC-SCHHHHHHH T ss_pred cC-cCHHHHHHH Confidence 43 456666655 |
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190] Probab=95.56 E-value=0.019 Score=59.59 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=75.3 Q ss_pred hcCCccc-ChHhhhccCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccC Q psy13054 996 ALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMI 1074 (1128) Q Consensus 996 ~~g~~~~-~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e 1074 (1128) +.|++.+ +..|++++||+|++++|..+.+..++ ++....+++++++++++.........+.+.|++..+... +-. T Consensus 126 e~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi--~~h- 201 (242) T d2b0ja2 126 DVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNIT--SYH- 201 (242) T ss_dssp GGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEE--ECB- T ss_pred HCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEE--CCC- Confidence 3577765 79999999999999999877788888 578899999999999999998888999999988776542 221 Q ss_pred CCCCCCCCccccCCCeEECCCCCCCcHHHHHHHHHH Q psy13054 1075 PEPLPADHPLVQLDNCVLTPHTSSATKAVRDEKSST 1110 (1128) Q Consensus 1075 ~EPl~~~~pL~~~pNvilTPHiag~t~e~~~~~~~~ 1110 (1128) |.- -|-..-..+++. ++.++|..+...+. T Consensus 202 --p~a--~pe~~g~~li~~---~~aseE~iekv~el 230 (242) T d2b0ja2 202 --PGC--VPEMKGQVYIAE---GYASEEAVNKLYEI 230 (242) T ss_dssp --CSS--CTTTCCCEEEEE---SSSCHHHHHHHHHH T ss_pred --ccC--cCccccceEEec---CCCCHHHHHHHHHH Confidence 211 111122344443 35677777665544 |
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336] Probab=95.53 E-value=0.025 Score=58.46 Aligned_cols=108 Identities=23% Similarity=0.231 Sum_probs=78.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHH-hhCCCEEEEEeCCCCc--------hh------------hhhcCCcccChHhhhc-c Q psy13054 953 GLKGATVGIVGLGNIGLETAKLL-KAFKVSKILYTSRRVK--------EE------------GTALGAQLVPLDTLCA-E 1010 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l-~afG~~Vi~~d~~~~~--------~~------------~~~~g~~~~~l~ell~-~ 1010 (1128) ++.|+||.|=|+|++|+.+|+.| +.+|++|+++++.... .. ....+.+..+.++++. . T Consensus 28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (234) T d1b26a1 28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELD 107 (234) T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHTSC T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccccc Confidence 48999999999999999999999 5789999987654311 00 0111233456777776 8 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) |||++-|. ..+.|+.+...+++- .+++-.+-+.+- .++ .+.|.+..|..+ T Consensus 108 ~DI~~PcA-----~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~~~ 157 (234) T d1b26a1 108 VDILVPAA-----LEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGILVV 157 (234) T ss_dssp CSEEEECS-----CTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCEEE T ss_pred cceeecch-----hcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeEEe Confidence 99998653 446899999999985 578888888864 445 477888777655 |
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287] Probab=95.53 E-value=0.0044 Score=60.30 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=31.9 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128) ++|||||+|++|..+|++|..-|.+|.+||....+. T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~ 37 (162) T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAV 37 (162) T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHH T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhh Confidence 589999999999999999999999999999754443 |
>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562] Probab=95.51 E-value=0.014 Score=57.80 Aligned_cols=92 Identities=16% Similarity=0.224 Sum_probs=60.8 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hh----hc----CC--c---c---cChHhhhccCCEE Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GT----AL----GA--Q---L---VPLDTLCAESDFI 1014 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~----~~----g~--~---~---~~l~ell~~sDvV 1014 (1128) ++.||+|.|+|.|..|++++..|...|+ ++.+++++..+.+ .. .. .. . . .++.+.+.++|+| T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 94 (182) T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL 94 (182) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE T ss_pred CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee Confidence 5799999999999999999999999998 6677886655432 11 11 11 1 1 1345678899999 Q ss_pred EEecCCCccc---ccccCHHHHccCCCCcEEEEcC Q psy13054 1015 FVTCALTKDT---EQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1015 ~l~lPlt~~T---~~li~~~~l~~mk~ga~lIN~a 1046 (1128) +++.|..... ..++. -+..++++.+++++. T Consensus 95 IN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~ 127 (182) T d1vi2a1 95 TNGTKVGMKPLENESLVN--DISLLHPGLLVTECV 127 (182) T ss_dssp EECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC T ss_pred ccccCCccccccchhhhh--HHHhhhcchhhHHhh Confidence 9999965332 11111 134556666665554 |
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190] Probab=95.50 E-value=0.0089 Score=55.87 Aligned_cols=85 Identities=14% Similarity=0.169 Sum_probs=58.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-h-hhcCCccc-----C---hHhh-hccCCEEEEecCCCcccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-G-TALGAQLV-----P---LDTL-CAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~-~~~g~~~~-----~---l~el-l~~sDvV~l~lPlt~~T~ 1025 (1128) .+|.|+|+|++|+.+|+.|...|.+|++.|..++... . .+.+.... + |+++ ++++|.++...+..+. T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~-- 78 (132) T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV-- 78 (132) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH-- T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH-- Confidence 3689999999999999999999999999998766544 2 22344321 2 3333 6889999987775433 Q ss_pred cccCHHHHccCCCCcEEE Q psy13054 1026 QLIGRKQFSLMKPTAILV 1043 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lI 1043 (1128) +++-....+.+.+..+++ T Consensus 79 N~~~~~~~k~~~~~~iI~ 96 (132) T d1lssa_ 79 NLMSSLLAKSYGINKTIA 96 (132) T ss_dssp HHHHHHHHHHTTCCCEEE T ss_pred HHHHHHHHHHcCCceEEE Confidence 344444555666665553 |
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913] Probab=95.35 E-value=0.017 Score=61.38 Aligned_cols=108 Identities=16% Similarity=0.267 Sum_probs=75.5 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCc---------hhh---h-hc------CCcccChHhhhc-cCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK---------EEG---T-AL------GAQLVPLDTLCA-ESD 1012 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~---------~~~---~-~~------g~~~~~l~ell~-~sD 1012 (1128) +|.|+||.|=|+|++|+.+|+.|...|++|+++++.... +.. . .. .....+-++++. .|| T Consensus 33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 112 (293) T d1hwxa1 33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCD 112 (293) T ss_dssp SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCS T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCcc Confidence 689999999999999999999999999999987654311 110 0 00 011223345554 799 Q ss_pred EEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1013 FIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1013 vV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) |++-|. +.+.|+.+....++- .+++--+.+.+ ..+| .+.|.+..|..+ T Consensus 113 IliPaA-----~~~~I~~~~a~~l~a-k~I~EgAN~P~-t~eA-~~~L~~~gI~vi 160 (293) T d1hwxa1 113 ILIPAA-----SEKQLTKSNAPRVKA-KIIAEGANGPT-TPQA-DKIFLERNIMVI 160 (293) T ss_dssp EEEECS-----SSSCBCTTTGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCEEE T ss_pred EEeecc-----ccccccHHHHHHHhh-CEEeccCCCCC-Ccch-HHHHHHCCCEEe Confidence 998653 456788888888864 47788888886 4555 467877777554 |
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583] Probab=95.31 E-value=0.0085 Score=57.54 Aligned_cols=93 Identities=23% Similarity=0.239 Sum_probs=59.9 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchhh--hh-------cCC--cc-cChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEEG--TA-------LGA--QL-VPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~--~~-------~g~--~~-~~l~ell~~sDvV~l~lPlt~ 1022 (1128) |+|+|||.|.+|..+|-.|...|+ +++.||....+... .+ ... .. ..-.+.++.||+|+++..... T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~ 81 (146) T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK 81 (146) T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc Confidence 789999999999999998876554 88999876654331 11 111 11 123456899999999876432 Q ss_pred -------cccc-cc--CH-------HHHccCCCCcEEEEcCCCc Q psy13054 1023 -------DTEQ-LI--GR-------KQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1023 -------~T~~-li--~~-------~~l~~mk~ga~lIN~aRG~ 1049 (1128) .+|- ++ |. +.+....|++++|+++-.- T Consensus 82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPv 125 (146) T d1hyha1 82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPV 125 (146) T ss_dssp GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH T ss_pred cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcH Confidence 1221 11 11 2346668899999997653 |
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811] Probab=95.18 E-value=0.016 Score=56.05 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=63.4 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhh-------cCCcc-----cChHhhhccCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTA-------LGAQL-----VPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~-------~g~~~-----~~l~ell~~sDvV~l~lP 1019 (1128) +.++|+|||.|.+|+.+|-.+...+. +++++|.+..... +.+ .+... .+.++.++.||+|++++. T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154) T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc Confidence 45789999999999999988766564 8999997776543 111 11111 245688999999999885 Q ss_pred CC--c------cccc-cc--CH-------HHHccCCCCcEEEEcCCCc Q psy13054 1020 LT--K------DTEQ-LI--GR-------KQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1020 lt--~------~T~~-li--~~-------~~l~~mk~ga~lIN~aRG~ 1049 (1128) .. + .||- ++ |. +.+....|.+++|+++..- T Consensus 86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPv 133 (154) T d1pzga1 86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPL 133 (154) T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH T ss_pred cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcH Confidence 32 1 1321 11 11 2355567899999987654 |
>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098] Probab=95.17 E-value=0.017 Score=54.85 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=60.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchhhh--hc---------CC--cccChHhhhccCCEEEEecC-- Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEEGT--AL---------GA--QLVPLDTLCAESDFIFVTCA-- 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~~~--~~---------g~--~~~~l~ell~~sDvV~l~lP-- 1019 (1128) .+|+|||.|++|..+|..+...| -++..||....+.... +. .. ...+..+.++.||+|+++.- T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142) T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC Confidence 37999999999999999998776 4899999777654411 10 11 11245677899999999863 Q ss_pred CCcc-ccc-cc--CH-------HHHccCCCCcEEEEcCCC Q psy13054 1020 LTKD-TEQ-LI--GR-------KQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1020 lt~~-T~~-li--~~-------~~l~~mk~ga~lIN~aRG 1048 (1128) ..+. +|. ++ |. +.+....|+++++|++.. T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP 120 (142) T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120 (142) T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC Confidence 3332 221 01 11 234555689999999764 |
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666] Probab=95.02 E-value=0.011 Score=57.45 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=62.1 Q ss_pred eEEEEEcChhhHH-HHHHHhhC-CCEEEEEeCCCCchh--hhhcCCc--ccChHhhhc-cCCEEEEecCCCcccccccCH Q psy13054 958 TVGIVGLGNIGLE-TAKLLKAF-KVSKILYTSRRVKEE--GTALGAQ--LVPLDTLCA-ESDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 958 tvGIIG~G~IG~~-vA~~l~af-G~~Vi~~d~~~~~~~--~~~~g~~--~~~l~ell~-~sDvV~l~lPlt~~T~~li~~ 1030 (1128) ++||||+|.+|+. ....++.+ +++++++|+...+.. ....+.. +.+.++++. +.|+|+++.|.. ++--+-. T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~--~H~~~~~ 80 (167) T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD--VHSTLAA 80 (167) T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG--GHHHHHH T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccc--ccccccc Confidence 7999999999976 56777666 668777876654443 3344543 347888875 569999999843 2222222 Q ss_pred HHHccCCCCcEEEEc-CCCcccCHHHHHHHHhcCCc Q psy13054 1031 KQFSLMKPTAILVNT-SRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~-aRG~lVde~aL~~aL~~g~i 1065 (1128) ..++. +. .+|+.- ---.+-+.+.|.++.++..+ T Consensus 81 ~al~~-gk-~V~~EKP~~~~~~e~~~l~~~a~~~~~ 114 (167) T d1xeaa1 81 FFLHL-GI-PTFVDKPLAASAQECENLYELAEKHHQ 114 (167) T ss_dssp HHHHT-TC-CEEEESCSCSSHHHHHHHHHHHHHTTC T ss_pred ccccc-cc-ccccCCCCcCCHHHHHHHHHHHHHcCC Confidence 33332 21 255432 12222445667777665544 |
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512] Probab=94.95 E-value=0.019 Score=60.13 Aligned_cols=110 Identities=19% Similarity=0.276 Sum_probs=72.1 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC--------Cch-h-------------------hhhcCCcccCh Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR--------VKE-E-------------------GTALGAQLVPL 1004 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~--------~~~-~-------------------~~~~g~~~~~l 1004 (1128) ++.|+||.|=|+|++|+.+|+.|...|++|+++.+.. -.. . ....+.+..+- T Consensus 33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (255) T d1bgva1 33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPG 112 (255) T ss_dssp CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEET T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeech Confidence 4899999999999999999999999999998764322 111 0 00112233333 Q ss_pred Hhhh-ccCCEEEEecCCCcccccccCHHHHccCCC-Cc-EEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1005 DTLC-AESDFIFVTCALTKDTEQLIGRKQFSLMKP-TA-ILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1005 ~ell-~~sDvV~l~lPlt~~T~~li~~~~l~~mk~-ga-~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) ++++ ..|||++-| .+.+.|+.+..+.++. ++ +++--+.+.+-++ |.-..|+++.|.-+ T Consensus 113 ~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~vv 173 (255) T d1bgva1 113 EKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMVVA 173 (255) T ss_dssp CCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCEEE T ss_pred hhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCEEe Confidence 4433 469998744 4567788888887764 33 7777777776554 44445666666443 |
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261] Probab=94.91 E-value=0.052 Score=56.08 Aligned_cols=108 Identities=28% Similarity=0.357 Sum_probs=76.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHH-hhCCCEEEEEeCCCCc---------hh---h-h-------hcCCcccChHhhh-cc Q psy13054 953 GLKGATVGIVGLGNIGLETAKLL-KAFKVSKILYTSRRVK---------EE---G-T-------ALGAQLVPLDTLC-AE 1010 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l-~afG~~Vi~~d~~~~~---------~~---~-~-------~~g~~~~~l~ell-~~ 1010 (1128) .|.|+||.|-|+|++|..+|+.| +.+|++|+...+.... .+ . . -.+.+..+.++++ .. T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 108 (239) T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE 108 (239) T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc Confidence 48999999999999999999988 5789999877544321 00 0 0 0133445667755 46 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEE Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGA 1068 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~ga 1068 (1128) |||++-|.- .+.|+.+...+++- .+++-.+-+.+- .++ .+.|.+..|-.+ T Consensus 109 ~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI~~i 158 (239) T d1gtma1 109 VDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGILQI 158 (239) T ss_dssp CSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCEEE T ss_pred ccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCCEEe Confidence 999986654 36788888888864 577888888874 445 477877777554 |
>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606] Probab=94.91 E-value=0.015 Score=58.01 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=50.8 Q ss_pred CCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCcc--------cChHhhhccCCEEEEecCCC Q psy13054 955 KGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQL--------VPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~--------~~l~ell~~sDvV~l~lPlt 1021 (1128) ..|+|.|+| .|.||+.+++.|..-|.+|.++.++..+.. ....+++. .+++++++.+|+|+.++... T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~ 78 (205) T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (205) T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC Confidence 468999999 599999999999999999999987655432 22223322 24678899999999888643 |
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515] Probab=94.85 E-value=0.0096 Score=56.87 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=56.8 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhhc--CCc-------ccChHhhhccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTAL--GAQ-------LVPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~~--g~~-------~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) ++|+|||.|++|..+|-.+...+. +++.||...+... +.+. ... ...-.+.++.||+|+++...... T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142) T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142) T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--- T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC Confidence 579999999999999988865554 8999997766543 2211 111 11235678899999998542221 Q ss_pred ---ccc-cc--CH-------HHHccCCCCcEEEEcCCCc Q psy13054 1024 ---TEQ-LI--GR-------KQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1024 ---T~~-li--~~-------~~l~~mk~ga~lIN~aRG~ 1049 (1128) ++- ++ |. +.+....|.+++|+++..- T Consensus 82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPv 120 (142) T d1y6ja1 82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPV 120 (142) T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSH T ss_pred cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChH Confidence 110 11 11 2345567899999997754 |
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562] Probab=94.79 E-value=0.011 Score=50.61 Aligned_cols=37 Identities=11% Similarity=0.084 Sum_probs=33.7 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE 993 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~ 993 (1128) |||||+|-|..|+.++.-++.+|.+++++|+..+.+. T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~pa 38 (78) T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAA 38 (78) T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGGG T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCcc Confidence 7899999999999999999999999999998766543 |
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408] Probab=94.76 E-value=0.028 Score=55.77 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=49.0 Q ss_pred ccCCCeEEEEE-cChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhh----cCCc--------ccChHhhhccCCEEEEe Q psy13054 953 GLKGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTA----LGAQ--------LVPLDTLCAESDFIFVT 1017 (1128) Q Consensus 953 ~L~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~----~g~~--------~~~l~ell~~sDvV~l~ 1017 (1128) +|.||++.|.| -|.||+++|+.|...|++|++.+++.++.. ... .... ..++++++.+.|+|+.+ T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~ 99 (191) T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA 99 (191) T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeec Confidence 69999999999 599999999999999999999987765433 111 1111 11355667778877766 Q ss_pred cC Q psy13054 1018 CA 1019 (1128) Q Consensus 1018 lP 1019 (1128) .+ T Consensus 100 Ag 101 (191) T d1luaa1 100 GA 101 (191) T ss_dssp CC T ss_pred Cc Confidence 54 |
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727] Probab=94.71 E-value=0.014 Score=55.66 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=34.3 Q ss_pred CCCCCCEEEEEe-cChhhHHHHHHHhhCCCeEEEEcCCCcc Q psy13054 697 MGLKGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRRVK 736 (1128) Q Consensus 697 ~~l~gktvGIiG-~G~IG~~va~r~~afg~~vi~y~~~~~~ 736 (1128) +...=|+||||| +|+||+.+|++|+.-|.+|.+||..... T Consensus 5 ~~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~ 45 (152) T d2pv7a2 5 INSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA 45 (152) T ss_dssp SCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG T ss_pred cCCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc Confidence 334558999999 9999999999999999999999985433 |
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422] Probab=94.68 E-value=0.024 Score=54.35 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=61.8 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhhc---------CCcc-cChHhhhccCCEEEEecC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTAL---------GAQL-VPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~~---------g~~~-~~l~ell~~sDvV~l~lP 1019 (1128) ..+++|+|||.|.+|..+|-.+...|. +++.||....+.. +.+. .... ..-.+.++.||+|+++.. T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag 83 (148) T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG 83 (148) T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc Confidence 467899999999999999999876554 7999987655432 1111 1111 234577899999999765 Q ss_pred CCcc---cc-ccc--CH-------HHHccCCCCcEEEEcCCCc Q psy13054 1020 LTKD---TE-QLI--GR-------KQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1020 lt~~---T~-~li--~~-------~~l~~mk~ga~lIN~aRG~ 1049 (1128) .... +| .++ |. +.+.+..|++++|+++..- T Consensus 84 ~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPv 126 (148) T d1ldna1 84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPV 126 (148) T ss_dssp CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH T ss_pred cccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcc Confidence 3221 11 111 11 2345556889999986543 |
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287] Probab=94.67 E-value=0.022 Score=53.57 Aligned_cols=89 Identities=17% Similarity=0.137 Sum_probs=64.7 Q ss_pred ccCCCeEEEEEcC----------hhhHHHHHHHhhCCCEEEEEeCCCCchhhh------------hcCCc-ccChHhhhc Q psy13054 953 GLKGATVGIVGLG----------NIGLETAKLLKAFKVSKILYTSRRVKEEGT------------ALGAQ-LVPLDTLCA 1009 (1128) Q Consensus 953 ~L~gktvGIIG~G----------~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~------------~~g~~-~~~l~ell~ 1009 (1128) .+.+++|||+|+- .-...+++.|...|++|.+|||..+..... ..+.. ..+++++++ T Consensus 10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~ 89 (136) T d1mv8a3 10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA 89 (136) T ss_dssp TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH T ss_pred hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh Confidence 4678999999984 457789999999999999999865432210 01122 348999999 Q ss_pred cCCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1010 ESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1010 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) .||+|+++.+-. +- .+....++++.+++++ || T Consensus 90 ~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~-~~ 121 (136) T d1mv8a3 90 SSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL-VG 121 (136) T ss_dssp HCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES-SS T ss_pred hceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC-CC Confidence 999999999854 22 2345667788889987 44 |
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148] Probab=94.64 E-value=0.012 Score=56.95 Aligned_cols=31 Identities=32% Similarity=0.358 Sum_probs=29.2 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +|||||+|++|+.+|+.++.-|.+|.+||+. T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165) T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSC T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECC Confidence 6999999999999999999999999999874 |
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108] Probab=94.49 E-value=0.036 Score=52.62 Aligned_cols=92 Identities=24% Similarity=0.277 Sum_probs=57.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhc-------C----CcccChHhhhccCCEEEEecCC-- Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTAL-------G----AQLVPLDTLCAESDFIFVTCAL-- 1020 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~-------g----~~~~~l~ell~~sDvV~l~lPl-- 1020 (1128) ++|+|||.|++|..+|-.+..-+. +++.+|...+... ..+. + +...+-.+-++.||+|+++... T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~~ 81 (142) T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPR 81 (142) T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC- T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeeccC Confidence 689999999999999988865444 8899998776543 1111 1 1112223457899999998852 Q ss_pred Cc-ccc-ccc--CH-------HHHccCCCCcEEEEcCCC Q psy13054 1021 TK-DTE-QLI--GR-------KQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1021 t~-~T~-~li--~~-------~~l~~mk~ga~lIN~aRG 1048 (1128) .+ +++ .++ |. +.+.+-.|.+++++++.. T Consensus 82 ~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNP 120 (142) T d1uxja1 82 KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 120 (142) T ss_dssp --------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSS T ss_pred CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCc Confidence 21 122 122 11 234555779999998654 |
>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190] Probab=94.40 E-value=0.016 Score=57.00 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=52.7 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc----C------CcccChHhhhccCCEEEEecCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL----G------AQLVPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~----g------~~~~~l~ell~~sDvV~l~lPl 1020 (1128) ++.||+|.|+|.|..+++++..|...| ++.+++++..+.+ .... . ....+++..+..+|+|+++.|. T Consensus 15 ~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~ 93 (177) T d1nvta1 15 RVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPI 93 (177) T ss_dssp CCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCT T ss_pred CcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCcc Confidence 589999999999999999999999888 8889987766543 1111 1 1234677788899999999996 Q ss_pred C Q psy13054 1021 T 1021 (1128) Q Consensus 1021 t 1021 (1128) . T Consensus 94 g 94 (177) T d1nvta1 94 G 94 (177) T ss_dssp T T ss_pred c Confidence 4 |
>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520] Probab=94.35 E-value=0.014 Score=57.37 Aligned_cols=87 Identities=22% Similarity=0.313 Sum_probs=58.0 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHh-hhc-----cCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDT-LCA-----ESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~e-ll~-----~sDvV~l~lPl 1020 (1128) .|.+|.|+|.|.||...++.++.+|+ +|++.|+...+.+ +++.|+..+ ++.+ +.+ ..|+|+-+.+. T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~ 106 (174) T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG 106 (174) T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC Confidence 57899999999999999999999998 6888887665554 566665321 2222 222 16777776663 Q ss_pred CcccccccCHHHHccCCCCcEEEEcC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) . ++ + ...+..++++..++-++ T Consensus 107 ~-~~---~-~~a~~~~~~~G~iv~~G 127 (174) T d1jqba2 107 S-ET---L-SQAVKMVKPGGIISNIN 127 (174) T ss_dssp T-TH---H-HHHHHHEEEEEEEEECC T ss_pred H-HH---H-HHHHHHHhcCCEEEEEe Confidence 2 21 2 23456667777777665 |
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940] Probab=94.34 E-value=0.011 Score=58.18 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=31.5 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCcc Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 736 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~ 736 (1128) ++|||||+|++|..+|++|..-|.+|.+||+...+ T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~ 37 (176) T d2pgda2 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSK 37 (176) T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHH T ss_pred CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHH Confidence 68999999999999999999999999999975543 |
>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303] Probab=94.31 E-value=0.035 Score=60.36 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=64.3 Q ss_pred CCeEEEEEcChhhHHHHHHH-hhCCC-EEEEEeCCCCchh--hh----hcCCcc--c-ChHhhhccCCEEEEecCCCccc Q psy13054 956 GATVGIVGLGNIGLETAKLL-KAFKV-SKILYTSRRVKEE--GT----ALGAQL--V-PLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l-~afG~-~Vi~~d~~~~~~~--~~----~~g~~~--~-~l~ell~~sDvV~l~lPlt~~T 1024 (1128) -++++|||.|..++.-++.+ .-++. +|.+|+++..+.. .. ..|+.. + +++++++.||+|+.+++ ++.+ T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~ 206 (340) T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY 206 (340) T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC Confidence 36899999999999888765 45554 6777876655433 11 124433 2 79999999999999887 4555 Q ss_pred ccccCHHHHccCCCCcEEEEcCC Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .-+|+. +.+|||+.+..+|. T Consensus 207 ~Pv~~~---~~l~pG~hI~aiGs 226 (340) T d1x7da_ 207 ATIITP---DMLEPGMHLNAVGG 226 (340) T ss_dssp EEEECG---GGCCTTCEEEECSC T ss_pred Ccccch---hhcCCCCEEeeccc Confidence 568875 46789999999875 |
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702] Probab=94.30 E-value=0.025 Score=55.61 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=63.4 Q ss_pred eEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCC-Cchh--hhhcCC----c-ccChHhhhc--cCCEEEEecCCCccccc Q psy13054 958 TVGIVGLGNIGLETAKLLKAF-KVSKILYTSRR-VKEE--GTALGA----Q-LVPLDTLCA--ESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~-~~~~--~~~~g~----~-~~~l~ell~--~sDvV~l~lPlt~~T~~ 1026 (1128) ++||||+|.+|+..++.++.. +++++++.++. .+.. ....+. + +.+++++++ +.|+|+++.|...... T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~- 81 (184) T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE- 81 (184) T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH- T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc- Confidence 699999999999999999876 77887654443 3222 233343 2 348999884 5789999988443322 Q ss_pred ccCHHHHccCCCCcE-EEEc-CCCcccCHHHHHHHHhcCCceE Q psy13054 1027 LIGRKQFSLMKPTAI-LVNT-SRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1027 li~~~~l~~mk~ga~-lIN~-aRG~lVde~aL~~aL~~g~i~g 1067 (1128) -....++.|.- ++-- .--.+-+.+.|.+..++..+.. T Consensus 82 ----~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~ 120 (184) T d1ydwa1 82 ----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI 120 (184) T ss_dssp ----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE T ss_pred ----hhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE Confidence 12333444443 3321 1112234456777777766544 |
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287] Probab=94.25 E-value=0.033 Score=55.09 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=44.7 Q ss_pred eEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchhh---hh-----------------cCCcc-cChHhhhccCCEEE Q psy13054 958 TVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEEG---TA-----------------LGAQL-VPLDTLCAESDFIF 1015 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~~---~~-----------------~g~~~-~~l~ell~~sDvV~ 1015 (1128) +|||.|+|+|||.++|.+... +++++++++..+.... .. .+... .++.+++.++|+|+ T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178) T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178) T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE Confidence 699999999999999999754 6899888776554321 11 11111 25677778888888 Q ss_pred EecCC Q psy13054 1016 VTCAL 1020 (1128) Q Consensus 1016 l~lPl 1020 (1128) -|.|. T Consensus 83 ecTG~ 87 (178) T d1b7go1 83 DTTPN 87 (178) T ss_dssp ECCST T ss_pred ECCCC Confidence 88884 |
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833] Probab=94.22 E-value=0.044 Score=52.59 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=60.5 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhc-------CCc----ccChHhhhccCCEEEEecCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTAL-------GAQ----LVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~-------g~~----~~~l~ell~~sDvV~l~lPlt 1021 (1128) ..+|+|||.|.+|..+|-.+..-++ +++.||....... +.+. +.. ..+..+.++.||+|+++.-.. T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150) T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150) T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc Confidence 3589999999999999987754443 7888887665543 1111 111 124467889999999987733 Q ss_pred cc---c-----c-ccc--CHH-------HHccCCCCcEEEEcCCCc Q psy13054 1022 KD---T-----E-QLI--GRK-------QFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1022 ~~---T-----~-~li--~~~-------~l~~mk~ga~lIN~aRG~ 1049 (1128) .. + | .++ |.+ .++.-.|++++|+++..- T Consensus 83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPv 128 (150) T d1t2da1 83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPV 128 (150) T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSH T ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCch Confidence 21 1 1 111 221 245556899999998763 |
>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727] Probab=94.21 E-value=0.017 Score=56.37 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=47.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--hhhcCCcccChHhhhccCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--GTALGAQLVPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~~~~g~~~~~l~ell~~sDvV~l~lPl 1020 (1128) .+|+|.|+|.|..+++++.-|+..|+ ++.+++++..+.+ ....+....+- .-..++|+|+++.|. T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~-~~~~~~DliINaTpi 83 (167) T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINS-LENQQADILVNVTSI 83 (167) T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESC-CTTCCCSEEEECSST T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhc-ccccchhhheecccc Confidence 57899999999999999999999998 6788876655544 22334333221 123578999999984 |
>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336] Probab=94.17 E-value=0.039 Score=52.24 Aligned_cols=91 Identities=23% Similarity=0.314 Sum_probs=58.8 Q ss_pred CeEEEEEcChhhHHHHHHHh--hCCCEEEEEeCCCCchhhh--h------c--CCc-ccChHhhhccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLETAKLLK--AFKVSKILYTSRRVKEEGT--A------L--GAQ-LVPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~--afG~~Vi~~d~~~~~~~~~--~------~--g~~-~~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) .+|+|||.|++|..+|-.+. .+.-+++.+|....+.... + . ... ..+..+.++.||+|+++... +. T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~-~~ 79 (140) T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV-PQ 79 (140) T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC-CC T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc-cc Confidence 37999999999999998775 4546899998665443311 1 0 011 12345668999999998642 22 Q ss_pred cccccCH--------------HHHccCCCCcEEEEcCCC Q psy13054 1024 TEQLIGR--------------KQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1024 T~~li~~--------------~~l~~mk~ga~lIN~aRG 1048 (1128) ..+.-.. +.+....|++++|+++-. T Consensus 80 ~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP 118 (140) T d1a5za1 80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP 118 (140) T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS T ss_pred CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc Confidence 2222111 235666789999998755 |
>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274] Probab=94.15 E-value=0.017 Score=56.35 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=60.8 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-ChHh------hhccCCEEEEecCCCcccc Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-PLDT------LCAESDFIFVTCALTKDTE 1025 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-~l~e------ll~~sDvV~l~lPlt~~T~ 1025 (1128) .|++|.|.|. |.+|+...+.++.+|++|++.+++..+.+ .++.|+..+ +..+ -....|+|+-+.. + + T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~-~- 102 (171) T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--K-E- 102 (171) T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--T-T- T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--h-h- Confidence 5789999995 99999999999999999999887655544 566676432 2211 2244788887554 1 1 Q ss_pred cccCHHHHccCCCCcEEEEcC Q psy13054 1026 QLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1026 ~li~~~~l~~mk~ga~lIN~a 1046 (1128) + ...++.++++..+|.++ T Consensus 103 --~-~~~~~~l~~~G~~v~~G 120 (171) T d1iz0a2 103 --V-EESLGLLAHGGRLVYIG 120 (171) T ss_dssp --H-HHHHTTEEEEEEEEEC- T ss_pred --H-HHHHHHHhcCCcEEEEe Confidence 2 45678888888888875 |
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363] Probab=94.15 E-value=0.018 Score=55.79 Aligned_cols=32 Identities=31% Similarity=0.240 Sum_probs=28.2 Q ss_pred CEEEEEecChhhHHHHHHHhhCC--CeEEEEcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFK--VSKILYTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg--~~vi~y~~~ 733 (1128) |+|+|||+|.||..+|+.++..| .+|.+||+. T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~ 35 (171) T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN 35 (171) T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC Confidence 57999999999999999998766 578999874 |
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287] Probab=94.11 E-value=0.016 Score=56.08 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=56.4 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------ChHh-h---hccCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PLDT-L---CAESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l~e-l---l~~sDvV~l~lPlt~~ 1023 (1128) .|.+|.|+|.|.||...++.++.+|++|++.+++..+.+ +++.|+..+ +..+ + ....|.++.+... ++ T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~-~~ 105 (166) T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVS-NS 105 (166) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSC-HH T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccccc-ch Confidence 578999999999999999999999999999987765544 556665321 2212 1 1223444444432 22 Q ss_pred cccccCHHHHccCCCCcEEEEcC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) + + ...++.++++..++.++ T Consensus 106 ~---~-~~~~~~l~~~G~iv~~G 124 (166) T d1llua2 106 A---F-GQAIGMARRGGTIALVG 124 (166) T ss_dssp H---H-HHHHTTEEEEEEEEECC T ss_pred H---H-HHHHHHhcCCcEEEEEE Confidence 2 2 23456667777776664 |
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589] Probab=93.99 E-value=0.035 Score=53.05 Aligned_cols=92 Identities=12% Similarity=0.140 Sum_probs=57.9 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC--CEEEEEeCCCCchh--hhh-------cCCc--cc-ChHhhhccCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVKEE--GTA-------LGAQ--LV-PLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~~~~~--~~~-------~g~~--~~-~l~ell~~sDvV~l~lPl 1020 (1128) ..++|+|||.|.+|..+|..|...| -+++.||....+.. +.+ .+.. .. +.+ -++.||+|+++... T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~ 82 (146) T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA 82 (146) T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc Confidence 3579999999999999999997655 58999986654332 111 1111 11 444 46899999997642 Q ss_pred Ccccccc-----c--CH-------HHHccCCCCcEEEEcCCC Q psy13054 1021 TKDTEQL-----I--GR-------KQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1021 t~~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG 1048 (1128) +...+. + |. +.+..-.|.+++|+++-. T Consensus 83 -~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNP 123 (146) T d1ez4a1 83 -PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANP 123 (146) T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSS T ss_pred -ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCc Confidence 222211 1 11 235666789999998853 |
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262] Probab=93.97 E-value=0.017 Score=55.22 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.8 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128) +|||||+|++|+.+|+++..-|.++++|++++.+. T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~ 36 (152) T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPS 36 (152) T ss_dssp EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHH T ss_pred EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHH Confidence 69999999999999999999999999998755444 |
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422] Probab=93.91 E-value=0.018 Score=55.47 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=61.3 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------C----hHhhhccCCEEEEecCCCcc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------P----LDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~----l~ell~~sDvV~l~lPlt~~ 1023 (1128) .|.+|.|+|.|.||...++.++..|.+|++.+.+..+.. .++.|+..+ + +.+.....|.++.+.+ .++ T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~ 105 (168) T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP 105 (168) T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH Confidence 578999999999999999999999999998886665554 556665432 2 2233344566665544 333 Q ss_pred cccccCHHHHccCCCCcEEEEcC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) + + ...+..++++..++.++ T Consensus 106 ~---~-~~a~~~l~~~G~i~~~g 124 (168) T d1rjwa2 106 A---F-QSAYNSIRRGGACVLVG 124 (168) T ss_dssp H---H-HHHHHHEEEEEEEEECC T ss_pred H---H-HHHHHHhccCCceEecc Confidence 3 2 35677788888888875 |
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306] Probab=93.87 E-value=0.025 Score=54.80 Aligned_cols=88 Identities=20% Similarity=0.338 Sum_probs=57.8 Q ss_pred CeEEEEEcChhhHH-HHHHHhhC-CCEEEEEeCCCCc-h--h-hhhcCCccc--ChHhhh-----ccCCEEEEecCCCcc Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAF-KVSKILYTSRRVK-E--E-GTALGAQLV--PLDTLC-----AESDFIFVTCALTKD 1023 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~af-G~~Vi~~d~~~~~-~--~-~~~~g~~~~--~l~ell-----~~sDvV~l~lPlt~~ 1023 (1128) -++||||.|.||+. +.+.++.+ ..+++.+-++... . . ++..++... ++++++ .+.|+|+.++|.... T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h 84 (157) T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH 84 (157) T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH Confidence 36999999999986 67888766 3455555443322 2 1 445566543 355554 467899999884433 Q ss_pred cccccCHHHHccCCCCcEEEEcCC Q psy13054 1024 TEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1024 T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .. .+..++..+.|.++|+-+. T Consensus 85 ~~---~~~~~~aa~~G~~VID~s~ 105 (157) T d1nvmb1 85 VQ---NEALLRQAKPGIRLIDLTP 105 (157) T ss_dssp HH---HHHHHHHHCTTCEEEECST T ss_pred HH---hHHHHHHHHcCCEEEEccc Confidence 32 2345667899999999875 |
>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606] Probab=93.74 E-value=0.027 Score=54.86 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=57.9 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------ChHhhh------ccCCEEEEecCC Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PLDTLC------AESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell------~~sDvV~l~lPl 1020 (1128) .|.+|.|+|. |.+|....+.++.+|++|++.+++..+.+ .++.|+..+ ++.+-+ ...|+|+-+.. T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g- 106 (174) T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA- 106 (174) T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH- T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc- Confidence 5889999995 99999999999999999998886544433 556665321 232222 12566665544 Q ss_pred CcccccccCHHHHccCCCCcEEEEcC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) . ++ + ...++.|+++..+|.++ T Consensus 107 ~-~~---~-~~~~~~l~~~G~iv~~G 127 (174) T d1yb5a2 107 N-VN---L-SKDLSLLSHGGRVIVVG 127 (174) T ss_dssp H-HH---H-HHHHHHEEEEEEEEECC T ss_pred H-HH---H-HHHHhccCCCCEEEEEe Confidence 1 21 2 34567778888888775 |
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727] Probab=93.68 E-value=0.021 Score=55.97 Aligned_cols=69 Identities=16% Similarity=0.099 Sum_probs=50.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh--hhhc----CCcccChHh-hhccCCEEEEecCCC Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE--GTAL----GAQLVPLDT-LCAESDFIFVTCALT 1021 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~----g~~~~~l~e-ll~~sDvV~l~lPlt 1021 (1128) .+.||+|.|+|.|..+++++..|..-+.++.++++..++.+ .... .+...+.++ .+.++|+|+++.|.. T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171) T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171) T ss_dssp CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC- T ss_pred CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc Confidence 47899999999999999999999888889999987765544 1111 112223333 467899999999965 |
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606] Probab=93.59 E-value=0.024 Score=55.19 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=63.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhh--cCC------c--ccChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTA--LGA------Q--LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~--~g~------~--~~~l~ell~~sDvV~l~l 1018 (1128) .+..++|+|||.|++|..+|-.+...|. +++.||.+.+... +.+ ... . ...-.+-++.||+|+++. T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160) T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160) T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec Confidence 4567899999999999999999987776 8999987655443 111 111 1 112346789999999876 Q ss_pred CCC--c-cccc-cc--CH-------HHHccCCCCcEEEEcCCCc Q psy13054 1019 ALT--K-DTEQ-LI--GR-------KQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1019 Plt--~-~T~~-li--~~-------~~l~~mk~ga~lIN~aRG~ 1049 (1128) -.. + +||- ++ |. ..+..-.+++++|+++..- T Consensus 97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPv 140 (160) T d1i0za1 97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPV 140 (160) T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH T ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCch Confidence 532 1 2221 11 11 2345557899999997653 |
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691] Probab=93.45 E-value=0.017 Score=56.57 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=30.3 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCCCcc Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVK 736 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~ 736 (1128) +|||||+|++|..+|++|..-|.+|.+||+...+ T Consensus 3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~ 36 (178) T d1pgja2 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSK 36 (178) T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHH T ss_pred EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHH Confidence 5999999999999999999999999999974433 |
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180] Probab=93.32 E-value=0.046 Score=53.61 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=43.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhC-CCEEEEEeCCCCchh---hhhcCC------------------cc-cChHhhhccCCE Q psy13054 957 ATVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRVKEE---GTALGA------------------QL-VPLDTLCAESDF 1013 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~---~~~~g~------------------~~-~~l~ell~~sDv 1013 (1128) ++|||-|||+|||.+.|.+... .++++..+...+... ....+. .. -+..++++++|+ T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv 81 (171) T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (171) T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE Confidence 4799999999999999998655 488888776654332 111111 11 134566677888 Q ss_pred EEEecCCC Q psy13054 1014 IFVTCALT 1021 (1128) Q Consensus 1014 V~l~lPlt 1021 (1128) |+-|.|.- T Consensus 82 ViEcTG~f 89 (171) T d1cf2o1 82 VIDCTPEG 89 (171) T ss_dssp EEECCSTT T ss_pred EEEccCCC Confidence 87777743 |
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542] Probab=93.28 E-value=0.031 Score=56.94 Aligned_cols=66 Identities=15% Similarity=0.221 Sum_probs=45.0 Q ss_pred CCCeEEEEEcChhhHH-HHHHHhhC-CCEEEE-EeCCCCchh--hhhcCCc------ccChHhhhc--cCCEEEEecCC Q psy13054 955 KGATVGIVGLGNIGLE-TAKLLKAF-KVSKIL-YTSRRVKEE--GTALGAQ------LVPLDTLCA--ESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~-vA~~l~af-G~~Vi~-~d~~~~~~~--~~~~g~~------~~~l~ell~--~sDvV~l~lPl 1020 (1128) +--+|||||+|.+|+. ++..++.. ++++++ +|++..+.. .+..++. +.++++++. +.|+|++++|. T Consensus 32 ~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~ 110 (221) T d1h6da1 32 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 110 (221) T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG T ss_pred CCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch Confidence 4457999999999974 66776665 788885 454443333 3344442 357899886 47889998883 |
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562] Probab=93.21 E-value=0.038 Score=47.20 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=31.7 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128) |||||+|-|.-|+-++.-++.+|.+++.|||... T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78) T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78) T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC Confidence 7999999999999999999999999999998543 |
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336] Probab=93.10 E-value=0.041 Score=54.02 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=44.6 Q ss_pred CeEEEEEcChhhHH-HHHHHhhCC--CEEEE-EeCCCCchh--hhhcCCc--ccChHhhhcc--CCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLE-TAKLLKAFK--VSKIL-YTSRRVKEE--GTALGAQ--LVPLDTLCAE--SDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~-vA~~l~afG--~~Vi~-~d~~~~~~~--~~~~g~~--~~~l~ell~~--sDvV~l~lPlt 1021 (1128) -++||||+|.+|+. .+..++.++ +++++ +|++..+.. ....+.. +.+++|++.. .|+|++++|.. T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~ 78 (181) T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE 78 (181) T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccc Confidence 47999999999987 477787654 46664 454443333 3344543 3589999864 78899998843 |
>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234] Probab=93.04 E-value=0.067 Score=57.54 Aligned_cols=87 Identities=13% Similarity=0.213 Sum_probs=63.4 Q ss_pred CCeEEEEEcChhhHHHHHHHhh-CCC-EEEEEeCCCCchh-----hhhcCCcc-cChHhhhccCCEEEEecCCCcccccc Q psy13054 956 GATVGIVGLGNIGLETAKLLKA-FKV-SKILYTSRRVKEE-----GTALGAQL-VPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~a-fG~-~Vi~~d~~~~~~~-----~~~~g~~~-~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) -+++||||.|..++.-++.+.. +.. +|.+|+++.++.+ ....+... ++.++.++.||+|+.+.| ++.-+ T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~ 201 (320) T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPV 201 (320) T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCC T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Ccccc Confidence 3689999999999999988753 554 7778876654433 12333332 477888999999998866 45557 Q ss_pred cCHHHHccCCCCcEEEEcCCC Q psy13054 1028 IGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lIN~aRG 1048 (1128) |+.+ .+|||+.++.+|.- T Consensus 202 ~~~~---~l~~G~hv~~iGs~ 219 (320) T d1omoa_ 202 VKAE---WVEEGTHINAIGAD 219 (320) T ss_dssp BCGG---GCCTTCEEEECSCC T ss_pred cchh---hcCCCCeEeecCCc Confidence 8754 57999999999753 |
>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773] Probab=92.81 E-value=0.039 Score=53.81 Aligned_cols=88 Identities=17% Similarity=0.268 Sum_probs=60.3 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------ChHhhh------ccCCEEEEecCC Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------PLDTLC------AESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell------~~sDvV~l~lPl 1020 (1128) .|++|.|.|. |.+|...++.++.+|++|++..++.++.+ .++.|+..+ ++.+-+ ...|+|+-++.. T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~ 104 (183) T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG 104 (183) T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc Confidence 4789999885 99999999999999999998876654444 455554321 332322 236777766652 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) ++ + ...++.++++..+|+++.. T Consensus 105 --~~---~-~~~~~~l~~~G~~v~~G~~ 126 (183) T d1pqwa_ 105 --EA---I-QRGVQILAPGGRFIELGKK 126 (183) T ss_dssp --HH---H-HHHHHTEEEEEEEEECSCG T ss_pred --hH---H-HHHHHHhcCCCEEEEEccC Confidence 21 2 3456778888888887643 |
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471] Probab=92.69 E-value=0.028 Score=54.84 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=56.4 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEE-eCCCCchh-hhhcCCccc------ChHhhhcc-----CCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILY-TSRRVKEE-GTALGAQLV------PLDTLCAE-----SDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~-d~~~~~~~-~~~~g~~~~------~l~ell~~-----sDvV~l~lPlt 1021 (1128) .|.+|.|+|.|.||...++.++++|+++++. +++..+.+ +++.|+..+ ++.+.+++ .|+|+.++. . T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G-~ 106 (174) T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG-S 106 (174) T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC-C T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC-c Confidence 5889999999999999999999999976654 54444434 556665321 23332221 577776665 2 Q ss_pred cccccccCHHHHccCCCCcEEEEcC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) +++. +..++.++++..++.++ T Consensus 107 ~~~~----~~~~~~~~~~G~i~~~G 127 (174) T d1f8fa2 107 PEIL----KQGVDALGILGKIAVVG 127 (174) T ss_dssp HHHH----HHHHHTEEEEEEEEECC T ss_pred HHHH----HHHHhcccCceEEEEEe Confidence 2221 24466677777777765 |
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090] Probab=92.59 E-value=0.053 Score=52.54 Aligned_cols=96 Identities=16% Similarity=0.214 Sum_probs=61.0 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchh--hhhc-------CCc---ccChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEE--GTAL-------GAQ---LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~--~~~~-------g~~---~~~l~ell~~sDvV~l~l 1018 (1128) .+...+|+|||.|++|..+|-.|...|. +++.||.+.+... +.+. +.. ..+-.+.++.||+|+++. T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita 95 (159) T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA 95 (159) T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec Confidence 3556689999999999999999976665 8899987655433 1111 111 112245568999999876 Q ss_pred CC--Cc-ccc-ccc--CHHH-------HccCCCCcEEEEcCCC Q psy13054 1019 AL--TK-DTE-QLI--GRKQ-------FSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1019 Pl--t~-~T~-~li--~~~~-------l~~mk~ga~lIN~aRG 1048 (1128) .. .+ ++| .++ |.+. +....|++++|+++.. T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP 138 (159) T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138 (159) T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc Confidence 42 22 222 122 2222 3455789999999874 |
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261] Probab=92.56 E-value=0.078 Score=48.55 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=71.6 Q ss_pred CeEEEEEc----ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccccCHH Q psy13054 957 ATVGIVGL----GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIGRK 1031 (1128) Q Consensus 957 ktvGIIG~----G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~~~ 1031 (1128) |+|.|||. |+.|..+.+.|+..|.+|+.++|+...- .|.. +.+++++=..-|++++++| .+.+..++. T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i----~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l~-- 74 (116) T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-- 74 (116) T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-- T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc----cCccccccchhccccceEEEEEeC-HHHHHHHHH-- Confidence 68999995 6789999999999999998888764432 2444 3489998888999999999 445555664 Q ss_pred HHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceE Q psy13054 1032 QFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGG 1067 (1128) Q Consensus 1032 ~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~g 1067 (1128) ....+...++++..+ .. .+++.+.+++..|.- T Consensus 75 ~~~~~g~k~v~~~~g---~~-~~~~~~~a~~~gi~v 106 (116) T d1y81a1 75 EAVEAGFKKLWFQPG---AE-SEEIRRFLEKAGVEY 106 (116) T ss_dssp HHHHTTCCEEEECTT---SC-CHHHHHHHHHHTCEE T ss_pred HHHhcCCceEEeccc---hh-hHHHHHHHHHcCCEE Confidence 244455667877643 33 445667777665543 |
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663] Probab=92.54 E-value=0.047 Score=52.89 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=30.7 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) ||++|||.|++|..+|..|..-|.+|.+|++. T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184) T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECC Confidence 89999999999999999999999999999974 |
>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085] Probab=92.50 E-value=0.025 Score=56.06 Aligned_cols=50 Identities=22% Similarity=0.325 Sum_probs=39.1 Q ss_pred CHHHHhhcCCEEEEecCC-CcccccccCHHHHhcCCCCcEEEEec--CCCccC Q psy13054 313 PLDTLCAESDFIFVTCAL-TKDTEQLIGRKQFSLMKPTAILINTS--RGGLLD 362 (1128) Q Consensus 313 sLdeLl~~SDiVslh~PL-T~~T~~lIn~~~l~~MK~gaiLINta--RG~lVD 362 (1128) .+.+.+++||+|+-..=. ...+-.+|+++.++.||||+++|-+| .|+.+. T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~E 159 (183) T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP 159 (183) T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSST T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCccc Confidence 466678899999854322 23477899999999999999999885 777664 |
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234] Probab=92.44 E-value=0.031 Score=53.79 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.2 Q ss_pred CeEEEE-EcChhhHHHHHHHhhCCCEEEEEeCCCCc Q psy13054 957 ATVGIV-GLGNIGLETAKLLKAFKVSKILYTSRRVK 991 (1128) Q Consensus 957 ktvGII-G~G~IG~~vA~~l~afG~~Vi~~d~~~~~ 991 (1128) .||+|| |.|.||+++|+.|...|.+|++++++.++ T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~ 36 (212) T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK 36 (212) T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH Confidence 379999 89999999999999999999999876544 |
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116] Probab=92.42 E-value=0.028 Score=54.71 Aligned_cols=102 Identities=20% Similarity=0.205 Sum_probs=58.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCC----CEEEEEeCCCCchhhhhcCCcccChHhhhcc--CCEEEEecCCCcccccccCH Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFK----VSKILYTSRRVKEEGTALGAQLVPLDTLCAE--SDFIFVTCALTKDTEQLIGR 1030 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG----~~Vi~~d~~~~~~~~~~~g~~~~~l~ell~~--sDvV~l~lPlt~~T~~li~~ 1030 (1128) -+|||||+|.+|+..++.++... ..++..+. .+...........+++|++.. .|+|++++|. +++.=+-. T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~--~~H~~~~~ 83 (172) T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVS--RRELGSLDEVRQISLEDALRSQEIDVAYICSES--SSHEDYIR 83 (172) T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEEC--SSCCCEETTEEBCCHHHHHHCSSEEEEEECSCG--GGHHHHHH T ss_pred cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccc--hHHHHHhhccCcCCHHHHHhCCCcchhhhcccc--cccccccc Confidence 37999999999999988887542 33333332 222222234455689999865 5789998883 33322223 Q ss_pred HHHccCCCCcEEEEc-CCCcccCHHHHHHHHhcCC Q psy13054 1031 KQFSLMKPTAILVNT-SRGGLLDQEALVEFLKDKK 1064 (1128) Q Consensus 1031 ~~l~~mk~ga~lIN~-aRG~lVde~aL~~aL~~g~ 1064 (1128) ..++.=| .+|+.- ---.+-+-+.|.+..++.. T Consensus 84 ~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~ 116 (172) T d1lc0a1 84 QFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKG 116 (172) T ss_dssp HHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTT T ss_pred cccccch--hhhcCCCccccHHHHHHHHHHHHHcC Confidence 3444322 355542 1223455666776544443 |
>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336] Probab=92.39 E-value=0.19 Score=51.49 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=33.1 Q ss_pred cCCCCCCEEEEEecChhhHHHHHHH-hhCCCeEEEEcCC Q psy13054 696 IMGLKGATVGIVGLGNIGLETAKLL-KAFKVSKILYTSR 733 (1128) Q Consensus 696 ~~~l~gktvGIiG~G~IG~~va~r~-~afg~~vi~y~~~ 733 (1128) +.+++|||+.|=|+|++|+.+|+.| +.+|+++++.+.. T Consensus 26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~ 64 (234) T d1b26a1 26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDS 64 (234) T ss_dssp TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEET T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecC Confidence 3468999999999999999999998 5799999987653 |
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314] Probab=92.31 E-value=0.048 Score=52.15 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=28.9 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) +|||||+|++|+++++.+..-|-++.+|++.. T Consensus 2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152) T d2ahra2 2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSL 33 (152) T ss_dssp EEEEECCSHHHHHHHHHHTTSSCEEEEECSSH T ss_pred EEEEEeccHHHHHHHHHHHhCCCeEEEEcChH Confidence 69999999999999999998898999998653 |
>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234] Probab=92.26 E-value=0.087 Score=49.92 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=59.1 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchhhh--h-------cCC--c--ccChHhhhccCCEEEEecCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEEGT--A-------LGA--Q--LVPLDTLCAESDFIFVTCALT 1021 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~~--~-------~g~--~--~~~l~ell~~sDvV~l~lPlt 1021 (1128) .+|+|||.|++|..+|-.+...|. +++.||......... + ... + ..+-.|.++.||+|++.... T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~- 79 (142) T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL- 79 (142) T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCC- T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEeccc- Confidence 379999999999999998875554 688898665543311 1 111 1 11234789999999988752 Q ss_pred cccccc-----c--CH-------HHHccCCCCcEEEEcCCC Q psy13054 1022 KDTEQL-----I--GR-------KQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1022 ~~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG 1048 (1128) +.+.+. + |. +.+....|.+++|+++.. T Consensus 80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP 120 (142) T d1ojua1 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120 (142) T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS T ss_pred cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC Confidence 222222 1 11 235666788999999874 |
>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274] Probab=92.17 E-value=0.12 Score=48.63 Aligned_cols=101 Identities=13% Similarity=0.150 Sum_probs=72.4 Q ss_pred CCCeEEEEEc----ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccccC Q psy13054 955 KGATVGIVGL----GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 955 ~gktvGIIG~----G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) .-|+|+|||. ++.|..+.+.|+..|.++..|.++..... -.|.. +.++.++-..-|++++++| .+.+..++. T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~--i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~ 88 (136) T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE--LFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLP 88 (136) T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE--ETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHH T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce--eeceecccchhhccCCCceEEEecc-HHHHHHHHH Confidence 4578999998 78999999999999999988876543222 12443 3488888888999999999 555666665 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcC Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDK 1063 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g 1063 (1128) + +..+...++++..+ ..++++...+.+.| T Consensus 89 ~--~~~~g~k~i~~q~G---~~~~e~~~~a~~~G 117 (136) T d1iuka_ 89 E--VLALRPGLVWLQSG---IRHPEFEKALKEAG 117 (136) T ss_dssp H--HHHHCCSCEEECTT---CCCHHHHHHHHHTT T ss_pred H--HHhhCCCeEEEecC---ccCHHHHHHHHHcC Confidence 3 33456778888765 35666555554544 |
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727] Probab=92.12 E-value=0.13 Score=45.36 Aligned_cols=65 Identities=14% Similarity=0.113 Sum_probs=47.7 Q ss_pred CCCeEEEEEcChhh-HHHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc--ChHhhhccCCEEEEecC Q psy13054 955 KGATVGIVGLGNIG-LETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV--PLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG-~~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~--~l~ell~~sDvV~l~lP 1019 (1128) +.|++=+||.|.+| .++|+.|+..|.+|.++|....... ..+.|+... .-.+.+...|+|+..-. T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~A 76 (96) T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSA 76 (96) T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTT T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCC Confidence 56889999999999 6679999999999999997654332 445666542 33445677888776543 |
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953] Probab=92.12 E-value=0.096 Score=51.26 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.9 Q ss_pred CeEEEEEcChhhHHHHHHHhh-CCCEEEEEeCCCCc Q psy13054 957 ATVGIVGLGNIGLETAKLLKA-FKVSKILYTSRRVK 991 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~a-fG~~Vi~~d~~~~~ 991 (1128) .+|||.|||+|||.+.+.+.. -.++++..++..+. T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~ 38 (172) T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPD 38 (172) T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCS T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCCh Confidence 479999999999999998865 35788877765443 |
>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285] Probab=92.10 E-value=0.31 Score=46.33 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=60.5 Q ss_pred cCCCeEEEEEc---ChhhHHHHHHHhhCCCEEEEEeCCCCchh----hhhcCCc--c-cChHhhhccCCEEEEecCCCcc Q psy13054 954 LKGATVGIVGL---GNIGLETAKLLKAFKVSKILYTSRRVKEE----GTALGAQ--L-VPLDTLCAESDFIFVTCALTKD 1023 (1128) Q Consensus 954 L~gktvGIIG~---G~IG~~vA~~l~afG~~Vi~~d~~~~~~~----~~~~g~~--~-~~l~ell~~sDvV~l~lPlt~~ 1023 (1128) |.|++|++||= |++.+..+..+..||++++.+-+....+. ....+.. . .++++.++.+|+|..---..+. T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~ 80 (153) T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 80 (153) T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh Confidence 57999999997 45899999999999998766544332211 2223332 2 3899999999998753211100 Q ss_pred -----------cccccCHHHHccCCCCcEEEEc Q psy13054 1024 -----------TEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1024 -----------T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) ....++.+.++.+|++++|.-. T Consensus 81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~ 113 (153) T d1pg5a2 81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHP 113 (153) T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECC T ss_pred ccchhHHHHHHHhhhhhHHHHhccCCCeEEecC Confidence 1123577777777777777655 |
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423] Probab=91.96 E-value=0.037 Score=51.25 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=29.9 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) |++-|+|+|++|+.+|+.|+.-|.+++++|.. T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d 32 (134) T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32 (134) T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc Confidence 67899999999999999999999999999874 |
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277] Probab=91.88 E-value=0.13 Score=52.95 Aligned_cols=37 Identities=35% Similarity=0.507 Sum_probs=34.0 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) +++||||.|=|+|++|+.+|+.|...|++|++.+... T Consensus 28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~ 64 (242) T d1v9la1 28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN 64 (242) T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc Confidence 5899999999999999999999999999999887643 |
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606] Probab=91.88 E-value=0.061 Score=53.53 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=31.2 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) |+|||||.|.+|+.+|..+...|.+|+.||+.. T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 37 (192) T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE 37 (192) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh Confidence 799999999999999999999999999999843 |
>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636] Probab=91.70 E-value=0.052 Score=52.66 Aligned_cols=89 Identities=25% Similarity=0.321 Sum_probs=58.1 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChHhhhc-----cCCEEEEecCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLDTLCA-----ESDFIFVTCALT 1021 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~ell~-----~sDvV~l~lPlt 1021 (1128) .|.+|.|+|.|.+|...++.++.+|+ .|++.+....+.+ .++.|...+ +.++..+ ..|+|+.++... T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~ 111 (172) T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ 111 (172) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc Confidence 47899999999999999999999997 5555665544444 455554321 1233332 267777776633 Q ss_pred cccccccCHHHHccCCCCcEEEEcCCC Q psy13054 1022 KDTEQLIGRKQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1022 ~~T~~li~~~~l~~mk~ga~lIN~aRG 1048 (1128) ++ + ...+..++++..++.++-+ T Consensus 112 -~~---~-~~a~~~l~~~G~iv~~G~~ 133 (172) T d1h2ba2 112 -AT---V-DYTPYLLGRMGRLIIVGYG 133 (172) T ss_dssp -HH---H-HHGGGGEEEEEEEEECCCS T ss_pred -hH---H-HHHHHHHhCCCEEEEEeCc Confidence 22 2 2456677888888877643 |
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823] Probab=91.58 E-value=0.1 Score=49.61 Aligned_cols=91 Identities=19% Similarity=0.236 Sum_probs=59.6 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhCCC--EEEEEeCCCCchhhhhcC--C---------cccChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAFKV--SKILYTSRRVKEEGTALG--A---------QLVPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~~~~g--~---------~~~~l~ell~~sDvV~l~lPlt~ 1022 (1128) .+|+|||. |++|+.+|-.+..-|. +++.+|....+..+.+.. . ...+..+.++.||+|+++... + T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~-~ 79 (144) T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV-P 79 (144) T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC-C T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc-C Confidence 47999995 9999999999986665 688888655433322221 0 112456889999999987652 2 Q ss_pred ccccc-----c--CH-------HHHccCCCCcEEEEcCCC Q psy13054 1023 DTEQL-----I--GR-------KQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1023 ~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG 1048 (1128) ...++ + |. +.+....|.+++|.++.. T Consensus 80 ~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNP 119 (144) T d1mlda1 80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119 (144) T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc Confidence 22222 1 11 234555889999999764 |
>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085] Probab=91.22 E-value=0.28 Score=48.78 Aligned_cols=98 Identities=24% Similarity=0.351 Sum_probs=72.7 Q ss_pred HHHHHHhhCCCEEEEEeCCCC-----chhhhhcCCccc-ChHhhhccCCEEE-EecCCCcccccccCHHHHccCCCCcEE Q psy13054 970 ETAKLLKAFKVSKILYTSRRV-----KEEGTALGAQLV-PLDTLCAESDFIF-VTCALTKDTEQLIGRKQFSLMKPTAIL 1042 (1128) Q Consensus 970 ~vA~~l~afG~~Vi~~d~~~~-----~~~~~~~g~~~~-~l~ell~~sDvV~-l~lPlt~~T~~li~~~~l~~mk~ga~l 1042 (1128) ..++.|...|++|++=..... +.+..+.|++.+ +-++++.+||+|+ +..|...+ .+.+.++.||+|+++ T Consensus 21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l 96 (194) T d1l7da2 21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL 96 (194) T ss_dssp HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE Confidence 577889999999876432211 222456788776 5688999999887 45665544 244688999999999 Q ss_pred EEcCCCcccCHHHHHHHHhcCCceEEEEecc Q psy13054 1043 VNTSRGGLLDQEALVEFLKDKKIGGAGLDVM 1073 (1128) Q Consensus 1043 IN~aRG~lVde~aL~~aL~~g~i~gaaLDV~ 1073 (1128) |..-- .....+++++|.+.++...++|.. T Consensus 97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i 125 (194) T d1l7da2 97 MCHLG--ALTNRPVVEALTKRKITAYAMELM 125 (194) T ss_dssp EEECC--GGGCHHHHHHHHHTTCEEEEGGGC T ss_pred EEecc--cccchhHHHHHHhcCceEEeeecc Confidence 98754 456778999999999999888775 |
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421] Probab=91.18 E-value=0.2 Score=51.28 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=33.3 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) .+|+|||+.|-|+|++|+.+|+.|...|+++++.|. T Consensus 35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~ 70 (230) T d1leha1 35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDV 70 (230) T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecc Confidence 358999999999999999999999999999998765 |
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816] Probab=91.14 E-value=0.087 Score=50.01 Aligned_cols=91 Identities=14% Similarity=0.249 Sum_probs=58.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCC--EEEEEeCCCCchhhh----hcC-----C---cccChHhhhccCCEEEEecCCCc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRRVKEEGT----ALG-----A---QLVPLDTLCAESDFIFVTCALTK 1022 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~--~Vi~~d~~~~~~~~~----~~g-----~---~~~~l~ell~~sDvV~l~lPlt~ 1022 (1128) .+|+|||.|++|..+|-.+...|. +++.+|.+..+.... +.. . ...+-.+.++.||+|+++.-. + T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~-~ 80 (143) T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP-R 80 (143) T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC-C T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccc-c Confidence 479999999999999988865554 899998766544311 111 1 112234568899999998752 2 Q ss_pred ccccc-----c--CH-------HHHccCCCCcEEEEcCCC Q psy13054 1023 DTEQL-----I--GR-------KQFSLMKPTAILVNTSRG 1048 (1128) Q Consensus 1023 ~T~~l-----i--~~-------~~l~~mk~ga~lIN~aRG 1048 (1128) ...+. + |. ..+....|++++|+++-. T Consensus 81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP 120 (143) T d1llda1 81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120 (143) T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS T ss_pred cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCc Confidence 22111 1 11 235666788999998743 |
>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336] Probab=90.96 E-value=0.1 Score=50.49 Aligned_cols=102 Identities=13% Similarity=0.086 Sum_probs=63.5 Q ss_pred eEEEEEcChhhHHHHHH--Hhh---C-CCEEEEEeCCCCchh-hhh-------cCCc---ccChHhhhccCCEEEEecCC Q psy13054 958 TVGIVGLGNIGLETAKL--LKA---F-KVSKILYTSRRVKEE-GTA-------LGAQ---LVPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~--l~a---f-G~~Vi~~d~~~~~~~-~~~-------~g~~---~~~l~ell~~sDvV~l~lPl 1020 (1128) +|.|||.|.+|.+.+-. ++. + +-++..+|....+.. ..+ .... ..+.++.++.||+|++++-. T Consensus 2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~~ 81 (162) T d1up7a1 2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRP 81 (162) T ss_dssp EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCCT T ss_pred EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEeccc Confidence 69999999999776633 222 2 347899987665543 111 1111 13678999999999998763 Q ss_pred C-----------cccccccCH---------------------HHHccCCCCcEEEEcCCCcccCHHHHHHH Q psy13054 1021 T-----------KDTEQLIGR---------------------KQFSLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128) Q Consensus 1021 t-----------~~T~~li~~---------------------~~l~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128) . +...+++.. ..+.+-.|++++||++..--+-+.++.+. T Consensus 82 ~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~~~~~~p~a~~i~vtNPvdiit~~~~~~ 152 (162) T d1up7a1 82 GGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPSGHITEFVRNY 152 (162) T ss_dssp THHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHHHT T ss_pred CCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhhhhccCCCeEEEEeCCHHHHHHHHHHHh Confidence 2 223344321 12233468999999998865555555544 |
>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261] Probab=90.92 E-value=0.39 Score=46.10 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=64.7 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchh------hhh----cCC--c-ccChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEE------GTA----LGA--Q-LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~------~~~----~g~--~-~~~l~ell~~sDvV~l~l 1018 (1128) +|.|++|++||=| ++.+..+..+..||+++.++.|..-.+. ... .+. . ..++++.++.+|+|..-. T Consensus 1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163) T d1pvva2 1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163) T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc Confidence 3789999999975 5778888999999999998876532221 111 111 2 238999999999998643 Q ss_pred CC------Ccc------cccccCHHHHccCCCCcEEEEcC Q psy13054 1019 AL------TKD------TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1019 Pl------t~~------T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) =. ..+ ....++.+.++.+|++++|.=.. T Consensus 81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl 120 (163) T d1pvva2 81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 120 (163) T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS T ss_pred eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC Confidence 11 111 12356888899999988887653 |
>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562] Probab=90.80 E-value=0.13 Score=46.60 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.1 Q ss_pred CCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc Q psy13054 699 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 (1128) Q Consensus 699 l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128) ..+.||||+|-|..|+-+|.-++.+|.++++||+... T Consensus 9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~ 45 (111) T d1kjqa2 9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD 45 (111) T ss_dssp TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC Confidence 3567899999999999999999999999999998543 |
>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422] Probab=90.64 E-value=0.19 Score=48.79 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=64.7 Q ss_pred CeEEEEEcChhh--HHHHHHHhhC---C-CEEEEEeCCCCchh--hh---------hcCCc-----ccChHhhhccCCEE Q psy13054 957 ATVGIVGLGNIG--LETAKLLKAF---K-VSKILYTSRRVKEE--GT---------ALGAQ-----LVPLDTLCAESDFI 1014 (1128) Q Consensus 957 ktvGIIG~G~IG--~~vA~~l~af---G-~~Vi~~d~~~~~~~--~~---------~~g~~-----~~~l~ell~~sDvV 1014 (1128) .+|.|||.|.+| ..++..++.. . .+++.+|....... .. ..+.. ..+..+.++.||+| T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169) T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169) T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE Confidence 379999999887 4555555543 2 48888987654322 11 11221 13678889999999 Q ss_pred EEecCCC-----------cccccccC----------------------HHHHccCCCCcEEEEcCCCcccCHHHHHHH Q psy13054 1015 FVTCALT-----------KDTEQLIG----------------------RKQFSLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128) Q Consensus 1015 ~l~lPlt-----------~~T~~li~----------------------~~~l~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128) +++..-. +...|+.. .+.+....|+++|||++-.--+-..++.+. T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~~k~ 159 (169) T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY 159 (169) T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHHHHH Confidence 9998633 22222221 134566789999999988755545555554 |
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320] Probab=90.58 E-value=0.098 Score=50.46 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=31.8 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCe-EEEEcCCCcc Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVK 736 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~-vi~y~~~~~~ 736 (1128) ++++|++.|||.|.+|+.+++.|...|.+ +..+.+...+ T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~k 60 (159) T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYER 60 (159) T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHH T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHH Confidence 47899999999999999999999999985 5555543333 |
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296] Probab=90.54 E-value=0.064 Score=53.03 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=30.3 Q ss_pred CEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) |+|||||.|.||+.+|..+...|.+|.+||+. T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~ 36 (186) T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDIN 36 (186) T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSS T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECC Confidence 68999999999999999999999999999984 |
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261] Probab=90.30 E-value=0.27 Score=50.46 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=31.7 Q ss_pred CCCCCEEEEEecChhhHHHHHHH-hhCCCeEEEEcCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLL-KAFKVSKILYTSR 733 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~-~afg~~vi~y~~~ 733 (1128) +|+||||.|-|+|++|+.+|+.| +.+|+++++.... T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~ 65 (239) T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDS 65 (239) T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECS T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeecccc Confidence 38999999999999999999988 4789999887653 |
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314] Probab=90.03 E-value=0.2 Score=45.01 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=46.6 Q ss_pred CCeEEEEEcC----------hhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCcc-cChHhhhccCCEEEEe Q psy13054 956 GATVGIVGLG----------NIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQL-VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 956 gktvGIIG~G----------~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~~-~~l~ell~~sDvV~l~ 1017 (1128) .|+|||+|+- .-.-.+.+.|+..|++|.+|||....... ..+... .++++++..||+|++. T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~-~~~~~~~~~l~~~~~~sDiII~~ 86 (108) T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES-EDQSVLVNDLENFKKQANIIVTN 86 (108) T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT-TCCSEECCCHHHHHHHCSEEECS T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh-ccCCEEEeCHHHHHhhCCEEEEc Confidence 3689999983 45678999999999999999998875432 223333 3899999999987753 |
>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953] Probab=89.79 E-value=0.11 Score=48.42 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=69.1 Q ss_pred cCCCeEEEEEc----ChhhHHHHHHHhhCC-CEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccc Q psy13054 954 LKGATVGIVGL----GNIGLETAKLLKAFK-VSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQL 1027 (1128) Q Consensus 954 L~gktvGIIG~----G~IG~~vA~~l~afG-~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~l 1027 (1128) ++-|+|+|||. |+.|..+.+.|+..| -+|+.++|....- .|.+ +.+++|+=..-|.+++++| .+.+..+ T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i----~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~ 80 (129) T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV----QGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDT 80 (129) T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE----TTEECBSSTTSCSSCCSEEEECSC-HHHHHHH T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc----CCeEeecchhhcCCCCceEEEecC-hHHhHHH Confidence 45689999997 899999999998866 5888888765432 2444 3489999889999999999 5566666 Q ss_pred cCHHHHccCCCCcEEE-EcCCCcc-----cCHHHHHHHHhcCCc Q psy13054 1028 IGRKQFSLMKPTAILV-NTSRGGL-----LDQEALVEFLKDKKI 1065 (1128) Q Consensus 1028 i~~~~l~~mk~ga~lI-N~aRG~l-----Vde~aL~~aL~~g~i 1065 (1128) +. .+..+.-.+.+| .-+-++. ..++.|.+..++..+ T Consensus 81 ~~--~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi 122 (129) T d2csua1 81 LI--QCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM 122 (129) T ss_dssp HH--HHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC T ss_pred HH--HHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC Confidence 63 333344444444 3333332 223445555555433 |
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953] Probab=89.59 E-value=0.32 Score=45.68 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=70.3 Q ss_pred CCCeEEEEEc----ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEecCCCcccccccC Q psy13054 955 KGATVGIVGL----GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVTCALTKDTEQLIG 1029 (1128) Q Consensus 955 ~gktvGIIG~----G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~lPlt~~T~~li~ 1029 (1128) .-|+|+|||. ++.|..+++.|+.+|.+|+.++|+...- .|.. +.+++++-..-|++++++| .+.+..++. T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i----~G~~~~~sl~dlp~~iD~v~i~vp-~~~~~~~~~ 92 (139) T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV----LGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYVE 92 (139) T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE----TTEECBSSGGGCSSCCSEEEECSC-HHHHHHHHH T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc----CCCcccccccccCccceEEEEEeC-HHHHHHHHH Confidence 4689999997 4799999999999999999998765432 2443 3489999889999999999 334444553 Q ss_pred HHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCc Q psy13054 1030 RKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKI 1065 (1128) Q Consensus 1030 ~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i 1065 (1128) + +..+...+++++.| ..+++. .+.+++..+ T Consensus 93 e--~~~~g~k~v~~~~G---~~~ee~-~~~a~~~gi 122 (139) T d2d59a1 93 Q--AIKKGAKVVWFQYN---TYNREA-SKKADEAGL 122 (139) T ss_dssp H--HHHHTCSEEEECTT---CCCHHH-HHHHHHTTC T ss_pred H--HHHhCCCEEEEecc---ccCHHH-HHHHHHCCC Confidence 2 33456678888765 345554 444444444 |
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234] Probab=89.50 E-value=0.12 Score=49.42 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=28.4 Q ss_pred EEEEE-ecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 703 TVGIV-GLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 703 tvGIi-G~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) ||+|| |.|+||+++|++|..-|.+|+++++ T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R 32 (212) T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSR 32 (212) T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEES T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEEC Confidence 69999 8999999999999999999999975 |
>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403] Probab=89.44 E-value=0.12 Score=50.24 Aligned_cols=46 Identities=28% Similarity=0.335 Sum_probs=37.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQ 1000 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~ 1000 (1128) .|.+|.|+|.|.+|...++.++++|+ +|++.|+...+.+ ++++|.. T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~ 74 (174) T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 74 (174) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc Confidence 68899999999999999999999997 6777776665555 5666654 |
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060] Probab=89.40 E-value=0.16 Score=49.41 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=54.1 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccccCchhh-------------hHHHHHhhc--------CCCh Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEEGQLFS-------------LVYDFCRYS--------IGGV 756 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~~~~~~~-------------~~~~la~~~--------pg~~ 756 (1128) .+...++-|||.|..|..-++.++++|.+|.+||.+....+..... .+.+..+.+ .-|. T Consensus 29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168) T d1pjca1 29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168) T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS T ss_pred CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc Confidence 4678999999999999999999999999999999864333211111 145555555 3334 Q ss_pred hhhhhhhHHHHHHhc Q psy13054 757 TIKRLVKKTFILSFG 771 (1128) Q Consensus 757 ~t~~l~~~~~l~~~~ 771 (1128) .+-+||.++.++.++ T Consensus 109 ~aP~lIt~~mv~~Mk 123 (168) T d1pjca1 109 RAPILVPASLVEQMR 123 (168) T ss_dssp SCCCCBCHHHHTTSC T ss_pred ccCeeecHHHHhhcC Confidence 567888888888876 |
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913] Probab=89.25 E-value=0.15 Score=53.95 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=34.6 Q ss_pred cCCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 696 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 696 ~~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) ..+|+||||.|=|+|++|+.+|+.|...|++|++.+.. T Consensus 31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~ 68 (293) T d1hwxa1 31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGES 68 (293) T ss_dssp CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcc Confidence 34699999999999999999999999999999988654 |
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274] Probab=89.10 E-value=0.063 Score=51.31 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=70.0 Q ss_pred eeCCCCCCCCccccccCCccccceeecccccccc-c-ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcC Q psy13054 269 FLGPKKNGSQNPKWRMGSKTDTNHYFGYNWFERS-N-GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLM 346 (1128) Q Consensus 269 ilG~g~iG~~va~~~~g~~~~~~~~~g~~~~~~~-~-~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~M 346 (1128) ++|+|..|..+++.....+ ..+..++..++. . .++.+.. .+..+.+.++|++++.+|..++..... ...+..+ T Consensus 5 ~IGlG~MG~~ma~~L~~~g---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~ 79 (156) T d2cvza2 5 FIGLGAMGYPMAGHLARRF---PTLVWNRTFEKALRHQEEFGSE-AVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL 79 (156) T ss_dssp EECCSTTHHHHHHHHHTTS---CEEEECSSTHHHHHHHHHHCCE-ECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC T ss_pred EEeHHHHHHHHHHHHHhCC---CEEEEeCCHHHHHHHHHHcCCc-ccccccccceeEEEecccchhhhhhhh-ccccccc Confidence 5677777777766432211 112222211111 1 1222333 344566678999999999887776554 5678999 Q ss_pred CCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEec Q psy13054 347 KPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLDV 382 (1128) Q Consensus 347 K~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLDV 382 (1128) +++.++|+++-...=....+.+.|++..+. .+|. T Consensus 80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda 113 (156) T d2cvza2 80 REGTYWVDATSGEPEASRRLAERLREKGVT--YLDA 113 (156) T ss_dssp CTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC T ss_pred cccccccccccCCHHHHHHHHHHHHHcCCe--EEec Confidence 999999999998887888899999987764 4564 |
>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336] Probab=89.00 E-value=0.34 Score=42.03 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=45.9 Q ss_pred CeEEEEEcChhhH-HHHHHHhhCCCEEEEEeCCCCchh--hhhcCCccc--ChHhhhccCCEEEEecC Q psy13054 957 ATVGIVGLGNIGL-ETAKLLKAFKVSKILYTSRRVKEE--GTALGAQLV--PLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 957 ktvGIIG~G~IG~-~vA~~l~afG~~Vi~~d~~~~~~~--~~~~g~~~~--~l~ell~~sDvV~l~lP 1019 (1128) .+|=+||.|.+|. .+|+.|+..|+.|.++|....... .++.|++.. .-.+-+..+|+|+..-. T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsA 69 (89) T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPA 69 (89) T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTT T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecC Confidence 5688999999998 789999999999999997654332 456676542 23344567888876533 |
>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292] Probab=88.92 E-value=0.41 Score=45.43 Aligned_cols=66 Identities=20% Similarity=0.324 Sum_probs=50.1 Q ss_pred cCCCeEEEEEc---ChhhHHHHHHHhhCCCEEEEEeCCCCchh------hhhcCCc---ccChHhhhccCCEEEEecC Q psy13054 954 LKGATVGIVGL---GNIGLETAKLLKAFKVSKILYTSRRVKEE------GTALGAQ---LVPLDTLCAESDFIFVTCA 1019 (1128) Q Consensus 954 L~gktvGIIG~---G~IG~~vA~~l~afG~~Vi~~d~~~~~~~------~~~~g~~---~~~l~ell~~sDvV~l~lP 1019 (1128) +.|++|++||= +++.+..+..+..||+++.++.|..-.+. ..+.+.. ..++++.++.+|+|....- T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~ 79 (157) T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI 79 (157) T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc Confidence 67999999998 68999999999999999998876543221 1222322 2489999999999886544 |
>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287] Probab=88.87 E-value=0.076 Score=51.13 Aligned_cols=87 Identities=18% Similarity=0.134 Sum_probs=58.8 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------Ch-Hhhhc-----cCCEEEEecC Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PL-DTLCA-----ESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l-~ell~-----~sDvV~l~lP 1019 (1128) .|.+|.|+|. |.+|...++.+++.|. +|++.+++..+.+ .++.|+..+ ++ +++.+ ..|+|+-+.. T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g 106 (170) T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN 106 (170) T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc Confidence 5789999995 9999999999999995 8888876655544 555665321 22 23322 2677777665 Q ss_pred CCcccccccCHHHHccCCCCcEEEEcC Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) .+++. + ..+..++++..++.++ T Consensus 107 -~~~~~---~-~a~~~l~~~G~iv~~G 128 (170) T d1jvba2 107 -SEKTL---S-VYPKALAKQGKYVMVG 128 (170) T ss_dssp -CHHHH---T-TGGGGEEEEEEEEECC T ss_pred -cchHH---H-hhhhhcccCCEEEEec Confidence 33322 2 3467788888888775 |
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190] Probab=88.70 E-value=0.21 Score=51.45 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=58.6 Q ss_pred cccCCccc-CHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCee Q psy13054 305 TALGAQLV-PLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIG 376 (1128) Q Consensus 305 ~~~g~~~v-sLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~Ia 376 (1128) ++.|++.+ +..|.++.||+|++++|-.+.+..++ ++....+|+|+++++++=...-....+.+.|+...+. T Consensus 125 Ee~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~ 196 (242) T d2b0ja2 125 EDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN 196 (242) T ss_dssp GGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE T ss_pred HHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE Confidence 34677776 89999999999999999776778888 6777899999999999887776677788888776653 |
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] Probab=88.64 E-value=0.17 Score=47.72 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=35.6 Q ss_pred ccccCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCC Q psy13054 951 IMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 990 (1128) Q Consensus 951 ~~~L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~ 990 (1128) ...+.||+|.|||-|.+|.+-|+.|..+|++|.++.|... T Consensus 8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~ 47 (150) T d1kyqa1 8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH 47 (150) T ss_dssp EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC T ss_pred heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC Confidence 3379999999999999999999999999999999976433 |
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487] Probab=88.42 E-value=0.12 Score=48.95 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=25.9 Q ss_pred EEEEEecChhhHHHHHHHhhCC-CeEEEEcCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFK-VSKILYTSR 733 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg-~~vi~y~~~ 733 (1128) +|||||+|++|+++++.+..-| -++.+|++. T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~ 33 (152) T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG 33 (152) T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC Confidence 6999999999999999776445 788888774 |
>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090] Probab=88.00 E-value=0.22 Score=48.38 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=56.2 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc-C-------hHhhh-----ccCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV-P-------LDTLC-----AESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~-~-------l~ell-----~~sDvV~l~lP 1019 (1128) .|.+|.|+|.|.||...++.++++|+ +|++.|+...+.+ +++.|...+ + ..++. ...|+++-+.. T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G 107 (174) T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 107 (174) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc Confidence 67899999999999999999999999 5666666665555 666665422 1 11122 23677776665 Q ss_pred CCcccccccCHHHHccCCCC-cEEEEcC Q psy13054 1020 LTKDTEQLIGRKQFSLMKPT-AILVNTS 1046 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~g-a~lIN~a 1046 (1128) . +++ + ..-++.++++ ..++-++ T Consensus 108 ~-~~~---~-~~a~~~~~~g~G~~v~vG 130 (174) T d1e3ia2 108 T-AQT---L-KAAVDCTVLGWGSCTVVG 130 (174) T ss_dssp C-HHH---H-HHHHHTBCTTTCEEEECC T ss_pred c-chH---H-HHHHHHhhcCCeEEEecC Confidence 2 222 1 3445666664 4555554 |
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562] Probab=87.99 E-value=0.31 Score=46.15 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=57.5 Q ss_pred CeEEEEEc-ChhhHHHHHHHh---hCCCEEEEEeCCCCchh--hhhc--C-C-------cccChHhhhccCCEEEEecCC Q psy13054 957 ATVGIVGL-GNIGLETAKLLK---AFKVSKILYTSRRVKEE--GTAL--G-A-------QLVPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~---afG~~Vi~~d~~~~~~~--~~~~--g-~-------~~~~l~ell~~sDvV~l~lPl 1020 (1128) .+|+|||. |++|+.+|-.|. .++-++..+|... ... +.+. . . ...+..+.++.||+|+++.-. T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145) T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145) T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc Confidence 37999995 999999998763 4567888898543 332 1111 1 0 012345678899999998742 Q ss_pred --Ccc-cc-ccc--CH-------HHHccCCCCcEEEEcCCCc Q psy13054 1021 --TKD-TE-QLI--GR-------KQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1021 --t~~-T~-~li--~~-------~~l~~mk~ga~lIN~aRG~ 1049 (1128) .|. +| .++ |. +.+....|.+++|.++..- T Consensus 80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPv 121 (145) T d2cmda1 80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPV 121 (145) T ss_dssp CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSH T ss_pred cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCc Confidence 221 11 122 11 3455667899999997654 |
>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606] Probab=87.95 E-value=0.65 Score=44.60 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=64.6 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchh----------hhhcCCc---ccChHhhhccCCEEEEec Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEE----------GTALGAQ---LVPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~----------~~~~g~~---~~~l~ell~~sDvV~l~l 1018 (1128) +|.|++|++||=| ++-+..+..+..||+++.++.|....+. ....|.. ..++++.+..+|+|..-. T Consensus 1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~ 80 (170) T d1otha2 1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT 80 (170) T ss_dssp CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec Confidence 3789999999976 3555666667789999998877543321 1122322 237999999999999766 Q ss_pred CCCcc------------cccccCHHHHccCCCCcEEEEcC Q psy13054 1019 ALTKD------------TEQLIGRKQFSLMKPTAILVNTS 1046 (1128) Q Consensus 1019 Plt~~------------T~~li~~~~l~~mk~ga~lIN~a 1046 (1128) ..... ....++.+.++.++++++|.-.. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl 120 (170) T d1otha2 81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL 120 (170) T ss_dssp SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS T ss_pred eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC Confidence 53222 12346778888888888887764 |
>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606] Probab=87.58 E-value=0.23 Score=48.31 Aligned_cols=46 Identities=30% Similarity=0.324 Sum_probs=39.6 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQ 1000 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~ 1000 (1128) .|.+|.|+|.|.+|...++.++.+|+ +|++.|....+.+ +++.|+. T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176) T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc Confidence 68899999999999999999999995 7889988777766 6666654 |
>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] Probab=87.58 E-value=0.2 Score=48.07 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=31.9 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) .|.+|.|+|.|.||...++.++.+|++|++.+.. T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~ 60 (168) T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRS 60 (168) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccc Confidence 5899999999999999999999999999999874 |
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] Probab=87.47 E-value=0.24 Score=45.24 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=30.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) |++.|||.|.||-++|..+..+|++|.++.... T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122) T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122) T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc Confidence 789999999999999999999999999987544 |
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666] Probab=87.37 E-value=0.5 Score=44.80 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=57.1 Q ss_pred CeEEEEEc-ChhhHHHHHHHhh----CCCEEEEEeCCCCchhhhhcCCc----cc-ChHhhhccCCEEEEecCCCccccc Q psy13054 957 ATVGIVGL-GNIGLETAKLLKA----FKVSKILYTSRRVKEEGTALGAQ----LV-PLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~a----fG~~Vi~~d~~~~~~~~~~~g~~----~~-~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) .+|||||. |..|+++.++|.. -..++..+..+.........+.. .. .-.+.++++|+|++|+|.. .++. T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~ 79 (147) T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK 79 (147) T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH Confidence 37999998 9999999997743 23555554433222111111111 11 2235679999999999943 2222 Q ss_pred ccCHHHHccCCCCcEEEEcCCCc-----------ccCHHHHHHHHhcCC Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGG-----------LLDQEALVEFLKDKK 1064 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~-----------lVde~aL~~aL~~g~ 1064 (1128) +. ..+..-..++++|+.|.-- =|+.+.+.+++++|. T Consensus 80 ~~--~~l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~ 126 (147) T d1mb4a1 80 VY--PALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT 126 (147) T ss_dssp HH--HHHHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC T ss_pred Hh--HHHHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC Confidence 22 1222223334555554322 256666777776654 |
>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562] Probab=87.15 E-value=0.25 Score=47.34 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=32.7 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCc Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRV 735 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~ 735 (1128) .|.+|.|+|.|.||...++.++++|+++++.+++.. T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~ 65 (168) T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA 65 (168) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchh Confidence 589999999999999999999999999999887544 |
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422] Probab=87.09 E-value=0.28 Score=44.21 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=31.0 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) .+++.|||.|.||-++|..+..+|.+|.++.... T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 55 (117) T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG 55 (117) T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEecc Confidence 3789999999999999999999999999997554 |
>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512] Probab=86.94 E-value=0.4 Score=49.65 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=32.7 Q ss_pred CCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 697 MGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 697 ~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) .+++|||+.|=|+|++|+.+|+.|...|+++++... T Consensus 32 ~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD 67 (255) T d1bgva1 32 DTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSG 67 (255) T ss_dssp CCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEE T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec Confidence 458999999999999999999999999999997644 |
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833] Probab=86.69 E-value=0.28 Score=44.45 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=30.5 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~ 988 (1128) .++|.|||.|.||-++|..|..+|++|.++.+. T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~ 54 (117) T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG 54 (117) T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehh Confidence 478999999999999999999999999999754 |
>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287] Probab=86.63 E-value=0.099 Score=51.11 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=41.4 Q ss_pred ccccCCcccCHHHHhhcCCEEEEecCCCcccccccCHHHHhcCCCCcEEEEecCCC Q psy13054 304 GTALGAQLVPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMKPTAILINTSRGG 359 (1128) Q Consensus 304 ~~~~g~~~vsLdeLl~~SDiVslh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~ 359 (1128) +++.|++..+.+|..++||+|.+.+| .+.-..+.+++....||+|+.|. .|.|= T Consensus 56 A~~~Gf~v~~~~eA~~~aDiim~L~P-D~~q~~vy~~~I~p~lk~g~~L~-FaHGf 109 (182) T d1np3a2 56 AEAHGLKVADVKTAVAAADVVMILTP-DEFQGRLYKEEIEPNLKKGATLA-FAHGF 109 (182) T ss_dssp HHHTTCEEECHHHHHHTCSEEEECSC-HHHHHHHHHHHTGGGCCTTCEEE-ESCCH T ss_pred HhhhccccccHHHHhhhcCeeeeecc-hHHHHHHHHHhhhhhcCCCcEEE-Eeccc Confidence 44568888899999999999999988 22234566677888999999875 34554 |
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562] Probab=86.38 E-value=0.31 Score=45.87 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=46.5 Q ss_pred eEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-----hhhcCCccc-----C---hHh-hhccCCEEEEecCCCcc Q psy13054 958 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-----GTALGAQLV-----P---LDT-LCAESDFIFVTCALTKD 1023 (1128) Q Consensus 958 tvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-----~~~~g~~~~-----~---l~e-ll~~sDvV~l~lPlt~~ 1023 (1128) .+-|+|+|++|+.+++.|...|.+|++.+...++.. ....++... + |++ -+.++|.|+++++.... T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~ 84 (153) T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD 84 (153) T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH Confidence 488999999999999999999999999987664321 122344321 1 222 35678999988875444 |
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305] Probab=86.28 E-value=0.25 Score=46.89 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=33.7 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCCCccc Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKE 737 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~~~~~ 737 (1128) .+|+|.|||.|.+|+.+|+.|.--|-+|.++|+...+. T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a 38 (182) T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESA 38 (182) T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHH T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHH Confidence 36999999999999999999998899999999865544 |
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796] Probab=86.16 E-value=1.3 Score=42.28 Aligned_cols=45 Identities=29% Similarity=0.344 Sum_probs=36.1 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGA 999 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~ 999 (1128) .|.+|.|+|.|.+|...+..++.+|+ +|++.+....+.+ +.+.|. T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga 74 (176) T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA 74 (176) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC Confidence 68899999999999999999999996 7777766666555 555554 |
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190] Probab=86.01 E-value=0.35 Score=45.75 Aligned_cols=63 Identities=25% Similarity=0.309 Sum_probs=42.7 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhCCC--EEEEEeCCCCch--h--hhhc-------C--Ccc----cChHhhhccCCEEEE Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAFKV--SKILYTSRRVKE--E--GTAL-------G--AQL----VPLDTLCAESDFIFV 1016 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~afG~--~Vi~~d~~~~~~--~--~~~~-------g--~~~----~~l~ell~~sDvV~l 1016 (1128) .+|+|||. |++|+.+|-.+...|. +++.+|...... + +.+. . .+. .+-.+.++.||+|++ T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145) T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145) T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE Confidence 36999995 9999999999987774 888998664321 1 1110 1 111 123468889999999 Q ss_pred ecC Q psy13054 1017 TCA 1019 (1128) Q Consensus 1017 ~lP 1019 (1128) +.. T Consensus 81 tAG 83 (145) T d1hyea1 81 TSG 83 (145) T ss_dssp CCS T ss_pred ecc Confidence 843 |
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262] Probab=85.86 E-value=0.3 Score=44.69 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=52.0 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc-----C---hHh-hhccCCEEEEecCCCccccc Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV-----P---LDT-LCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~-----~---l~e-ll~~sDvV~l~lPlt~~T~~ 1026 (1128) |.+-|+|+|++|+.+++.|++.+ |++.+....... ....|+... + |.+ -+.+++.+++..+....+. T Consensus 1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~- 77 (129) T d2fy8a1 1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI- 77 (129) T ss_dssp CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH- T ss_pred CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH- Confidence 45889999999999999998776 556666555444 444454432 2 222 2577999998888654443 Q ss_pred ccCHHHHccCCCCcEE Q psy13054 1027 LIGRKQFSLMKPTAIL 1042 (1128) Q Consensus 1027 li~~~~l~~mk~ga~l 1042 (1128) +-....+.+.|...+ T Consensus 78 -~~~~~~r~~~~~~~i 92 (129) T d2fy8a1 78 -HCILGIRKIDESVRI 92 (129) T ss_dssp -HHHHHHHHHCSSSCE T ss_pred -HHHHHHHHHCCCceE Confidence 323345555555433 |
>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116] Probab=85.83 E-value=0.27 Score=44.87 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=29.3 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTS 987 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~ 987 (1128) +++.|||.|.||-++|..++.+|.+|.++.+ T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~ 51 (122) T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 51 (122) T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEES T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEe Confidence 6899999999999999999999999999964 |
>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] Probab=85.70 E-value=0.25 Score=46.55 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=36.0 Q ss_pred CccCCCCCCEEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 694 PNIMGLKGATVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 694 ~~~~~l~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) ++..+++||++-|||-|.+|.+-|+.+..+|++|.+++| T Consensus 6 pl~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150) T d1kyqa1 6 QLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150) T ss_dssp EEEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE T ss_pred hhheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC Confidence 355679999999999999999999999999999999976 |
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823] Probab=85.67 E-value=0.27 Score=47.38 Aligned_cols=159 Identities=11% Similarity=0.039 Sum_probs=79.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCE-EEEEeCCCCchhhhhcCC-cc--------cChHhhhccCCEEEEecCCCccc Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVS-KILYTSRRVKEEGTALGA-QL--------VPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~-Vi~~d~~~~~~~~~~~g~-~~--------~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) .+|+|.|||.|.+|-..|..|+..|++ |.+++....-........ .. ...........-+.... .-. T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~ 79 (196) T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGK---SLS 79 (196) T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESC---CBS T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeE---Eec Confidence 579999999999999999999999995 888875543221111111 00 01122222222222211 112 Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCHHHHHHHHhcCCceEEEEeccCCCCCCCCCccc--cCCCeEECCCC--CCCc Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQEALVEFLKDKKIGGAGLDVMIPEPLPADHPLV--QLDNCVLTPHT--SSAT 1100 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~aL~~g~i~gaaLDV~e~EPl~~~~pL~--~~pNvilTPHi--ag~t 1100 (1128) +..........-...+.+|-++.+................... ..... .+.... ..|++..---+ ++.| T Consensus 80 ~~~~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~v~~~g~vigg~~~ 152 (196) T d1gtea4 80 ENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNR-----WDLPE--VDPETMQTSEPWVFAGGDIVGMANT 152 (196) T ss_dssp TTSBCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCT-----TSSBC--CCTTTCBCSSTTEEECSGGGCSCCC T ss_pred cceeeeehhhccccceeeEEeccccCCcccccccccccccccc-----cccee--ccccccCCCcccccccccccCCcch Confidence 2222333333345678888888877665555444433322111 11111 111111 23444333322 2334 Q ss_pred HHHHHHHHHHHHHHHHHHHcCCC Q psy13054 1101 KAVRDEKSSTSAENIIRGYKGEP 1123 (1128) Q Consensus 1101 ~e~~~~~~~~~~~nl~~~l~G~~ 1123 (1128) .-.........+..+.+++.+++ T Consensus 153 av~a~~~g~~~a~~v~r~~~~~~ 175 (196) T d1gtea4 153 TVESVNDGKQASWYIHKYIQAQY 175 (196) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHhhhehhHhhccHhhC Confidence 33344556667777777776543 |
>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085] Probab=85.48 E-value=0.3 Score=48.53 Aligned_cols=74 Identities=26% Similarity=0.398 Sum_probs=57.8 Q ss_pred ccccCCccc-CHHHHhhcCCEEE-EecCCCcccccccCHHHHhcCCCCcEEEEecCCCccCHHHHHHHHHcCCeeEEEEe Q psy13054 304 GTALGAQLV-PLDTLCAESDFIF-VTCALTKDTEQLIGRKQFSLMKPTAILINTSRGGLLDQEALVEFLKDKKIGGAGLD 381 (1128) Q Consensus 304 ~~~~g~~~v-sLdeLl~~SDiVs-lh~PLT~~T~~lIn~~~l~~MK~gaiLINtaRG~lVDe~AL~~AL~sG~IagAaLD 381 (1128) ..+.|++.+ +-++++.+||+|+ +..|+..+ .+.+.+++||+|+++|-.-- -....+++++|.+.+|...++| T Consensus 50 Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~li~~l~--p~~~~~~~~~l~~~~it~~a~e 123 (194) T d1l7da2 50 LTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVLMCHLG--ALTNRPVVEALTKRKITAYAME 123 (194) T ss_dssp HHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEEEEECC--GGGCHHHHHHHHHTTCEEEEGG T ss_pred HHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEEEEecc--cccchhHHHHHHhcCceEEeee Confidence 345678777 5689999999876 56676554 24478999999999998642 3567889999999999999988 Q ss_pred cC Q psy13054 382 VM 383 (1128) Q Consensus 382 Vf 383 (1128) -. T Consensus 124 ~i 125 (194) T d1l7da2 124 LM 125 (194) T ss_dssp GC T ss_pred cc Confidence 65 |
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190] Probab=85.45 E-value=0.31 Score=44.75 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=28.5 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTS 732 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~ 732 (1128) +|-|+|+|++|+.+|+.|...|.+|++.|. T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~ 31 (132) T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDI 31 (132) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEES T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecC Confidence 688999999999999999999999999987 |
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354] Probab=85.41 E-value=0.38 Score=43.61 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=30.7 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) .+++.|||.|.||-++|..++.+|++|.++.... T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119) T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119) T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec Confidence 4889999999999999999999999999987543 |
>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482] Probab=85.26 E-value=0.46 Score=46.36 Aligned_cols=87 Identities=15% Similarity=0.168 Sum_probs=59.6 Q ss_pred CCCeEEEE--EcChhhHHHHHHHhhCCCEEEEEeCCCCchh-----hhhcCCccc---------ChHhhh--------cc Q psy13054 955 KGATVGIV--GLGNIGLETAKLLKAFKVSKILYTSRRVKEE-----GTALGAQLV---------PLDTLC--------AE 1010 (1128) Q Consensus 955 ~gktvGII--G~G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-----~~~~g~~~~---------~l~ell--------~~ 1010 (1128) .|.++.|+ |.|.+|+...+.++.+|++|++..+..+..+ .++.|+..+ ++.+.+ .. T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~ 107 (189) T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 107 (189) T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC Confidence 47889998 6799999999999999999998765554322 245565332 111111 23 Q ss_pred CCEEEEecCCCcccccccCHHHHccCCCCcEEEEcCC Q psy13054 1011 SDFIFVTCALTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1011 sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) .|+|+-++. .+.+ ...+..|+++..+|.++. T Consensus 108 vdvv~D~vg-~~~~-----~~~~~~l~~~G~~v~~G~ 138 (189) T d1gu7a2 108 AKLALNCVG-GKSS-----TGIARKLNNNGLMLTYGG 138 (189) T ss_dssp EEEEEESSC-HHHH-----HHHHHTSCTTCEEEECCC T ss_pred ceEEEECCC-cchh-----hhhhhhhcCCcEEEEECC Confidence 788887764 2222 456888999999999863 |
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855] Probab=85.13 E-value=0.3 Score=46.63 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=31.7 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) .|.+|.|+|.|.||...++.++.+|.+|++.++. T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~ 59 (170) T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS 59 (170) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchH Confidence 4789999999999999999999999999999874 |
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287] Probab=85.10 E-value=0.32 Score=48.22 Aligned_cols=31 Identities=29% Similarity=0.272 Sum_probs=29.3 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +|+|||+|.+|..+|-.+..-|.+|++||.. T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n 32 (202) T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS 32 (202) T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSC T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC Confidence 5999999999999999999999999999973 |
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097] Probab=84.99 E-value=0.34 Score=48.47 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=31.1 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 988 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~ 988 (1128) ||+|.|||.|.-|...|..|+..|++|.+++.. T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~ 33 (373) T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE 33 (373) T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC Confidence 699999999999999999999999999999854 |
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076] Probab=84.99 E-value=0.52 Score=48.51 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=33.5 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCC Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRV 990 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~ 990 (1128) +|.||++.|.|. +.||+++|+.|..-|++|++.+++.. T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~ 41 (258) T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEK 41 (258) T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH Confidence 489999999996 67999999999999999999886543 |
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562] Probab=84.98 E-value=0.39 Score=43.26 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=30.4 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) |++.|||.|.+|-++|..++.+|.+|.++++.. T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116) T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116) T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc Confidence 789999999999999999999999999997654 |
>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336] Probab=84.72 E-value=1.2 Score=42.27 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=59.8 Q ss_pred cCCCeEEEEEc--ChhhHHHHHHHhhCCCEEEEEeCCCCch--h--------hhhcCCc--c-cChHhhhccCCEEEEec Q psy13054 954 LKGATVGIVGL--GNIGLETAKLLKAFKVSKILYTSRRVKE--E--------GTALGAQ--L-VPLDTLCAESDFIFVTC 1018 (1128) Q Consensus 954 L~gktvGIIG~--G~IG~~vA~~l~afG~~Vi~~d~~~~~~--~--------~~~~g~~--~-~~l~ell~~sDvV~l~l 1018 (1128) |.|++|++||= .++-+..+..+..||+++.++.|..-.+ . ....+.. . .++++.++.+|+|..-. T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161) T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161) T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc Confidence 57999999994 5799999999999999998887643211 1 1122222 2 37999999999998755 Q ss_pred CCCcc------------cccccCH-HHHccCCCCcEEEEc Q psy13054 1019 ALTKD------------TEQLIGR-KQFSLMKPTAILVNT 1045 (1128) Q Consensus 1019 Plt~~------------T~~li~~-~~l~~mk~ga~lIN~ 1045 (1128) -.... ....+.. .....+|++++|.=. T Consensus 81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~ 120 (161) T d1vlva2 81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHC 120 (161) T ss_dssp CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEEC T ss_pred eeeecccccchhhhccccceeeeehhhhcccCCCeeEecC Confidence 32111 1112233 334457778887665 |
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562] Probab=84.56 E-value=0.71 Score=43.58 Aligned_cols=104 Identities=10% Similarity=0.139 Sum_probs=57.1 Q ss_pred CeEEEEEc-ChhhHHHHHHHh---h-CCCEEEEEeCCCCchh---hhhcCCccc-Ch-HhhhccCCEEEEecCCCccccc Q psy13054 957 ATVGIVGL-GNIGLETAKLLK---A-FKVSKILYTSRRVKEE---GTALGAQLV-PL-DTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~---a-fG~~Vi~~d~~~~~~~---~~~~g~~~~-~l-~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) |+|||||. |.+|+++.++|. . .-.++..+.+...... ......... .. .+.++.+|++++++|.... +. T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s-~~ 80 (146) T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYT-NE 80 (146) T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHH-HH T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHH-HH Confidence 58999999 999999998653 2 2335554443322211 111111111 22 2357899999999995433 21 Q ss_pred ccCHHHHccCCCCcEEEEcCCCc-----------ccCHHHHHHHHhcC Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGG-----------LLDQEALVEFLKDK 1063 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~-----------lVde~aL~~aL~~g 1063 (1128) + ...+..-+.+.++|+.|..- =|+.+.|..++++| T Consensus 81 ~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g 126 (146) T d1t4ba1 81 I--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG 126 (146) T ss_dssp H--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT T ss_pred h--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC Confidence 1 12222233345566655432 24566777787764 |
>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562] Probab=84.45 E-value=1.1 Score=42.48 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=57.5 Q ss_pred cCCCeEEEEEc---ChhhHHHHHHHhhCCCEE-EEEeCCCCchh------hhhcCCc---ccChHhhhccCCEEEEecCC Q psy13054 954 LKGATVGIVGL---GNIGLETAKLLKAFKVSK-ILYTSRRVKEE------GTALGAQ---LVPLDTLCAESDFIFVTCAL 1020 (1128) Q Consensus 954 L~gktvGIIG~---G~IG~~vA~~l~afG~~V-i~~d~~~~~~~------~~~~g~~---~~~l~ell~~sDvV~l~lPl 1020 (1128) +.|.+|++||= |++.+..+..+..||+.+ ++..|..-.+. ....+.. ..++++.++++|+|...--. T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~ 81 (160) T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ 81 (160) T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc Confidence 67999999996 668999999999997554 44433221111 1233433 23789999999999864332 Q ss_pred Ccc----------cccccCHHHHccCCCCcEEEEc Q psy13054 1021 TKD----------TEQLIGRKQFSLMKPTAILVNT 1045 (1128) Q Consensus 1021 t~~----------T~~li~~~~l~~mk~ga~lIN~ 1045 (1128) .+. ....++.+.++.++++++|.-+ T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHc 116 (160) T d1ekxa2 82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP 116 (160) T ss_dssp GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECC T ss_pred ccccchHHHHHHHHHhhccHHHHHhcCcceeeecC Confidence 111 1123356666666766666544 |
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606] Probab=84.40 E-value=0.42 Score=43.62 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=30.6 Q ss_pred CeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 957 ATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 957 ktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) |++.|||.|.||-++|..++.+|.+|.++.+.. T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125) T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125) T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc Confidence 789999999999999999999999999997643 |
>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336] Probab=84.19 E-value=0.27 Score=47.76 Aligned_cols=64 Identities=20% Similarity=0.392 Sum_probs=42.7 Q ss_pred CCeEEEEEcChhhHHHH---HHH--hhC-CCEEEEEeCCCCchhh---------hhcCC--cc---cChHhhhccCCEEE Q psy13054 956 GATVGIVGLGNIGLETA---KLL--KAF-KVSKILYTSRRVKEEG---------TALGA--QL---VPLDTLCAESDFIF 1015 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA---~~l--~af-G~~Vi~~d~~~~~~~~---------~~~g~--~~---~~l~ell~~sDvV~ 1015 (1128) ..+|+|||.|.+|...+ ..+ ..+ +-+++.+|....+.+. ...+. +. .+.+|.++.||+|+ T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171) T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171) T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe Confidence 35899999999997643 233 233 3589999977654331 11121 11 37899999999999 Q ss_pred EecC Q psy13054 1016 VTCA 1019 (1128) Q Consensus 1016 l~lP 1019 (1128) +... T Consensus 82 ~~~~ 85 (171) T d1obba1 82 NTAM 85 (171) T ss_dssp ECCC T ss_pred eecc Confidence 8754 |
>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336] Probab=84.13 E-value=1.1 Score=43.62 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=60.7 Q ss_pred eEEEEEc-ChhhHHHHHHHhhC-CCEEEEEeCCCCchh-hh----h----cCCcccChHhhhccCCEEEEecCCCccccc Q psy13054 958 TVGIVGL-GNIGLETAKLLKAF-KVSKILYTSRRVKEE-GT----A----LGAQLVPLDTLCAESDFIFVTCALTKDTEQ 1026 (1128) Q Consensus 958 tvGIIG~-G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~-~~----~----~g~~~~~l~ell~~sDvV~l~lPlt~~T~~ 1026 (1128) +|||+|. |..|+++.++|... ..++.....+...-. .. . ......+.+++...+|+|++++|.... +. T Consensus 3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-~~ 81 (176) T d1vkna1 3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-YD 81 (176) T ss_dssp EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-HH T ss_pred EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-HH Confidence 7999998 99999999999764 456655544332211 11 0 112234677888899999999996543 32 Q ss_pred ccCHHHHccCCCCcEEEEcCCCcccCHHHHHH Q psy13054 1027 LIGRKQFSLMKPTAILVNTSRGGLLDQEALVE 1058 (1128) Q Consensus 1027 li~~~~l~~mk~ga~lIN~aRG~lVde~aL~~ 1058 (1128) ++ ... .+..+|+.|-.-=.+....++ T Consensus 82 ~~-----~~~-~~~~VIDlSadfRl~~~~~y~ 107 (176) T d1vkna1 82 LV-----REL-KGVKIIDLGADFRFDDPGVYR 107 (176) T ss_dssp HH-----TTC-CSCEEEESSSTTTCSSHHHHH T ss_pred HH-----Hhh-ccceEEecCccccccchhhHH Confidence 33 333 578999997665555555444 |
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562] Probab=83.92 E-value=0.45 Score=44.70 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=29.3 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) +|+|||.|.||+.+|.+|.--|.+|.++++.. T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~ 33 (167) T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVP 33 (167) T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCH Confidence 69999999999999999999999999998744 |
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809] Probab=83.82 E-value=0.49 Score=42.48 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=32.4 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) ..+|+|.|||-|.||-++|..|+.+|.+|.++.... T Consensus 20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121) T d1mo9a2 20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE 55 (121) T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc Confidence 458999999999999999999999999999987543 |
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336] Probab=83.80 E-value=0.37 Score=44.59 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=25.0 Q ss_pred eEEEEEc-ChhhHHHHHHHhhCCCEEEEE Q psy13054 958 TVGIVGL-GNIGLETAKLLKAFKVSKILY 985 (1128) Q Consensus 958 tvGIIG~-G~IG~~vA~~l~afG~~Vi~~ 985 (1128) +|||+|+ |+||+.+++.+..-|+++++- T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~ 30 (128) T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGHELVLK 30 (128) T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEE T ss_pred EEEEECCCCHHHHHHHHHHhcCCCeEEEE Confidence 6999996 999999999999999987654 |
>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141] Probab=83.72 E-value=0.3 Score=47.35 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=64.4 Q ss_pred CCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcCCccc------C-hHhhh-----ccCCEEEEecCC Q psy13054 955 KGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRVKEE-GTALGAQLV------P-LDTLC-----AESDFIFVTCAL 1020 (1128) Q Consensus 955 ~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g~~~~------~-l~ell-----~~sDvV~l~lPl 1020 (1128) .|.+|.|.|. |.+|+..++.++..|++|++..++.++.+ .++.|...+ + .++++ ...|+|+-++. T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG- 107 (182) T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG- 107 (182) T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC- T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC- Confidence 5889999999 67999999999999999998876655444 455554321 2 23332 33889988775 Q ss_pred CcccccccCHHHHccCCCCcEEEEcCCCc Q psy13054 1021 TKDTEQLIGRKQFSLMKPTAILVNTSRGG 1049 (1128) Q Consensus 1021 t~~T~~li~~~~l~~mk~ga~lIN~aRG~ 1049 (1128) .++ + .+.++.++++..++..+..+ T Consensus 108 -~~~---~-~~~~~~l~~~G~~v~~G~~~ 131 (182) T d1v3va2 108 -GEF---L-NTVLSQMKDFGKIAICGAIS 131 (182) T ss_dssp -HHH---H-HHHGGGEEEEEEEEECCCGG T ss_pred -chh---h-hhhhhhccCCCeEEeeccee Confidence 232 2 46788999999999997653 |
>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423] Probab=83.30 E-value=0.46 Score=45.13 Aligned_cols=61 Identities=21% Similarity=0.291 Sum_probs=46.6 Q ss_pred CCCeEEEEEc---ChhhHHHHHHHhhCCCEEEEEeCCCCchhhhhcCCc-ccChHhhhccCCEEEEe Q psy13054 955 KGATVGIVGL---GNIGLETAKLLKAFKVSKILYTSRRVKEEGTALGAQ-LVPLDTLCAESDFIFVT 1017 (1128) Q Consensus 955 ~gktvGIIG~---G~IG~~vA~~l~afG~~Vi~~d~~~~~~~~~~~g~~-~~~l~ell~~sDvV~l~ 1017 (1128) .|.+|++||= +++.+..+..+..||+++.+..|..-.+. ...+. ..+++|.++.+|+|..- T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~--~~~~~~~~~~~ea~~~aDviy~~ 66 (151) T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE--ENTFGTYVSMDEAVESSDVVMLL 66 (151) T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc--ccceeEEEechhccccCceeeee Confidence 5899999997 68999999999999999887765433222 12222 34899999999998753 |
>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562] Probab=83.18 E-value=0.36 Score=46.37 Aligned_cols=44 Identities=16% Similarity=0.120 Sum_probs=34.9 Q ss_pred CCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCchh-hhhcC Q psy13054 955 KGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKEE-GTALG 998 (1128) Q Consensus 955 ~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~~-~~~~g 998 (1128) .|++|.|+|.| .+|...++.++.+|++|++.+.+..+.+ .++.| T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lG 73 (179) T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG 73 (179) T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcC Confidence 47899999665 5999999999999999999987665544 34444 |
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108] Probab=83.17 E-value=0.35 Score=45.48 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=29.0 Q ss_pred CEEEEEecChhhHHHHHHHhhCC-CeEEEEcCCCccc Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFK-VSKILYTSRRVKE 737 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg-~~vi~y~~~~~~~ 737 (1128) ++|+|||.|++|..+|-.+..-+ .++++||...... T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~ 38 (142) T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVP 38 (142) T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHH T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccc Confidence 68999999999999998887544 3889999755444 |
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422] Probab=83.07 E-value=0.31 Score=46.21 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=29.5 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCC--eEEEEcCCC Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRR 734 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~--~vi~y~~~~ 734 (1128) .+++|+|||.|+||+.+|-.+...|. ++.+||... T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~ 41 (148) T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE 41 (148) T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc Confidence 57899999999999999999986554 788999643 |
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888] Probab=82.98 E-value=0.33 Score=44.25 Aligned_cols=34 Identities=18% Similarity=0.245 Sum_probs=30.8 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) .+++.|||.|.||-++|..+..+|++|.+..+.. T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~ 58 (123) T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS 58 (123) T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc Confidence 4789999999999999999999999999986543 |
>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562] Probab=82.97 E-value=0.25 Score=47.63 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=40.9 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhC-CCEEEEEeCCCCchh-hh---------hcCCcc-cChHhhhccCCEEEEe Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAF-KVSKILYTSRRVKEE-GT---------ALGAQL-VPLDTLCAESDFIFVT 1017 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~-~~---------~~g~~~-~~l~ell~~sDvV~l~ 1017 (1128) -+|+|+|+ |+||+++++.+... ++++++.-.+...+. .. ..++.. .++++++..+|+|+=- T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDF 78 (162) T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDF 78 (162) T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEEC T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEe Confidence 36999996 99999999988654 787766544433221 11 112222 3678899999988744 |
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303] Probab=82.80 E-value=0.42 Score=47.20 Aligned_cols=65 Identities=25% Similarity=0.335 Sum_probs=46.5 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh-hhhcCCccc------ChH----hhhc--cCCEEEEecC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE-GTALGAQLV------PLD----TLCA--ESDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~-~~~~g~~~~------~l~----ell~--~sDvV~l~lP 1019 (1128) .|.+|.|+|.|.||...++.++.+|+ +|++.|+...+.+ +++.|...+ ++. ++.. ..|+++-++. T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG 103 (195) T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG 103 (195) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc Confidence 58899999999999999999999998 6777776655555 566665432 222 2221 3788887765 |
>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606] Probab=82.43 E-value=0.33 Score=49.74 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=34.9 Q ss_pred ccCCCeEEEEEcCh-hhHHHHHHHhhCCCEEEEEeCCCCc Q psy13054 953 GLKGATVGIVGLGN-IGLETAKLLKAFKVSKILYTSRRVK 991 (1128) Q Consensus 953 ~L~gktvGIIG~G~-IG~~vA~~l~afG~~Vi~~d~~~~~ 991 (1128) +|.||++.|.|.+. ||+++|+.+...|++|++.+++.++ T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~ 43 (244) T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG 43 (244) T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH Confidence 58999999999965 9999999999999999999876554 |
>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210] Probab=82.39 E-value=0.48 Score=48.67 Aligned_cols=36 Identities=22% Similarity=0.136 Sum_probs=32.2 Q ss_pred cCCCeEEEEEc-C--hhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 954 LKGATVGIVGL-G--NIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 954 L~gktvGIIG~-G--~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) |.||++.|.|. | .||+++|+.|..-|++|++.+++. T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~ 41 (274) T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE 41 (274) T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH Confidence 78999999997 4 499999999999999999988653 |
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180] Probab=82.32 E-value=0.37 Score=46.87 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=25.3 Q ss_pred CEEEEEecChhhHHHHHHHhhCC-CeEEEEcC Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFK-VSKILYTS 732 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg-~~vi~y~~ 732 (1128) ++|||-|+||||+.+.|.+...+ +++++-.. T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd 33 (171) T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSK 33 (171) T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEE T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEec Confidence 58999999999999999887554 77776654 |
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487] Probab=82.29 E-value=0.46 Score=43.58 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=30.9 Q ss_pred CCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 956 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 956 gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) .+++.|||.|.||-++|..++.+|.+|.++.... T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125) T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125) T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec Confidence 4789999999999999999999999999997544 |
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606] Probab=82.24 E-value=0.58 Score=44.94 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=31.7 Q ss_pred CCCCCEEEEEecChhhHHHHHHHhhCCC--eEEEEcCCC Q psy13054 698 GLKGATVGIVGLGNIGLETAKLLKAFKV--SKILYTSRR 734 (1128) Q Consensus 698 ~l~gktvGIiG~G~IG~~va~r~~afg~--~vi~y~~~~ 734 (1128) .+..++|+|||.|++|..+|-.+..-|. ++++||... T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~ 55 (160) T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLE 55 (160) T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc Confidence 3567899999999999999999997775 788998753 |
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583] Probab=82.17 E-value=0.36 Score=45.65 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=28.7 Q ss_pred CEEEEEecChhhHHHHHHHhhCC--CeEEEEcCCCcc Q psy13054 702 ATVGIVGLGNIGLETAKLLKAFK--VSKILYTSRRVK 736 (1128) Q Consensus 702 ktvGIiG~G~IG~~va~r~~afg--~~vi~y~~~~~~ 736 (1128) |+|+|||.|+||..+|-.+..-| -++++||....+ T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~ 38 (146) T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAK 38 (146) T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccch Confidence 79999999999999999888555 478899875433 |
>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985] Probab=81.99 E-value=0.62 Score=47.18 Aligned_cols=66 Identities=17% Similarity=0.212 Sum_probs=41.4 Q ss_pred CCCeEEEEEcChhhH----HHHHHHhhC--CCEEEE-EeCCCCchh--hhhcCCc----ccChHhhhcc--CCEEEEecC Q psy13054 955 KGATVGIVGLGNIGL----ETAKLLKAF--KVSKIL-YTSRRVKEE--GTALGAQ----LVPLDTLCAE--SDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG~G~IG~----~vA~~l~af--G~~Vi~-~d~~~~~~~--~~~~g~~----~~~l~ell~~--sDvV~l~lP 1019 (1128) .--+|||||+|.+|. .-...++.+ ++++++ +|+...+.. ....+.. +.++++++.. -|+|++++| T Consensus 15 k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp 94 (237) T d2nvwa1 15 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 94 (237) T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC T ss_pred CCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC Confidence 345799999998654 334445443 578775 555443332 3344432 3589999864 678999988 Q ss_pred C Q psy13054 1020 L 1020 (1128) Q Consensus 1020 l 1020 (1128) . T Consensus 95 ~ 95 (237) T d2nvwa1 95 V 95 (237) T ss_dssp H T ss_pred C Confidence 3 |
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530] Probab=81.96 E-value=1.7 Score=42.12 Aligned_cols=91 Identities=18% Similarity=0.187 Sum_probs=54.5 Q ss_pred CeEEEEEc-ChhhHHHHHHHhhC-CCEEEEEeCCCCchh-hhh----c-CCc----ccChHhhhccCCEEEEecCCCccc Q psy13054 957 ATVGIVGL-GNIGLETAKLLKAF-KVSKILYTSRRVKEE-GTA----L-GAQ----LVPLDTLCAESDFIFVTCALTKDT 1024 (1128) Q Consensus 957 ktvGIIG~-G~IG~~vA~~l~af-G~~Vi~~d~~~~~~~-~~~----~-g~~----~~~l~ell~~sDvV~l~lPlt~~T 1024 (1128) -+|||||. |..|+++.++|... .+++.....+..... ..+ . +.. ....++.++++|+|++++|.. T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~--- 82 (183) T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHG--- 82 (183) T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSS--- T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccc--- Confidence 46999998 99999999999754 456655544333211 110 1 100 112456778999999999954 Q ss_pred ccccCHHHHccCCCCcEEEEcCCCcccCH Q psy13054 1025 EQLIGRKQFSLMKPTAILVNTSRGGLLDQ 1053 (1128) Q Consensus 1025 ~~li~~~~l~~mk~ga~lIN~aRG~lVde 1053 (1128) ...+....+.+....|..+.+.-... T Consensus 83 ---~s~~~~~~l~~~~~~v~~~~~~~~~~ 108 (183) T d2cvoa1 83 ---TTQEIIKGLPQELKIVDLSADFRLRD 108 (183) T ss_dssp ---HHHHHHHTSCSSCEEEECSSTTTCSC T ss_pred ---hHHHHHHHHHhcCcccccchhhhccc Confidence 33444444545555555554444433 |
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336] Probab=81.94 E-value=0.41 Score=46.31 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=30.9 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCC-eEEEEcCC Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSR 733 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~-~vi~y~~~ 733 (1128) .|.+|.|+|.|.||...++.++.+|+ +|++.++. T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~ 62 (182) T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62 (182) T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC T ss_pred CCCEEEEECCCccchhheecccccccccccccccc Confidence 58999999999999999999999998 68888773 |
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287] Probab=81.92 E-value=0.51 Score=46.14 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.7 Q ss_pred EEEEEecChhhHHHHHHHhhC-CCeEEEEcCCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAF-KVSKILYTSRR 734 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~af-g~~vi~y~~~~ 734 (1128) +|||.|+||||+.++|.+..- ++++++...+. T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~ 35 (178) T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTS 35 (178) T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSS T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCC Confidence 699999999999999998854 58888876543 |
>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314] Probab=81.86 E-value=0.5 Score=46.21 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=27.1 Q ss_pred EEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 703 TVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) +|||||+|.+|..+|..+ +.|.+|++||.. T Consensus 2 kI~ViGlG~vGl~~a~~~-a~g~~V~g~Din 31 (196) T d1dlja2 2 KIAVAGSGYVGLSLGVLL-SLQNEVTIVDIL 31 (196) T ss_dssp EEEEECCSHHHHHHHHHH-TTTSEEEEECSC T ss_pred EEEEECCChhHHHHHHHH-HCCCcEEEEECC Confidence 699999999999999877 579999999974 |
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287] Probab=81.84 E-value=0.49 Score=44.88 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=31.6 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) .|++|.|+|.|.||...++.++.+|.+|++.++. T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166) T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60 (166) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecch Confidence 4789999999999999999999999999999864 |
>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606] Probab=81.51 E-value=0.54 Score=47.65 Aligned_cols=40 Identities=28% Similarity=0.289 Sum_probs=35.1 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCCch Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRVKE 992 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~~~ 992 (1128) .|.||++-|.|.+ .||+++|+.|...|++|++.+++.++. T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~ 42 (248) T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG 42 (248) T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH Confidence 5899999999995 699999999999999999998766544 |
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718] Probab=81.49 E-value=0.46 Score=45.67 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=27.1 Q ss_pred EEEEEecChhhHHHHHHHhhC-CCeEEEEcCCCc Q psy13054 703 TVGIVGLGNIGLETAKLLKAF-KVSKILYTSRRV 735 (1128) Q Consensus 703 tvGIiG~G~IG~~va~r~~af-g~~vi~y~~~~~ 735 (1128) ++||||+|+||+.+++.++.. ++++++..+++. T Consensus 5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~ 38 (170) T d1f06a1 5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRA 38 (170) T ss_dssp EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSS T ss_pred eEEEECChHHHHHHHHHHHhCCCcEEEEEEeccc Confidence 699999999999999999976 677776655443 |
>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090] Probab=81.27 E-value=0.29 Score=47.89 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=59.6 Q ss_pred CCCeEEEEE-cChhhHHHHHHHhhCCCEEEE-EeCCCCchh--hhhcCCcc------cChHhhhcc-----CCEEEEecC Q psy13054 955 KGATVGIVG-LGNIGLETAKLLKAFKVSKIL-YTSRRVKEE--GTALGAQL------VPLDTLCAE-----SDFIFVTCA 1019 (1128) Q Consensus 955 ~gktvGIIG-~G~IG~~vA~~l~afG~~Vi~-~d~~~~~~~--~~~~g~~~------~~l~ell~~-----sDvV~l~lP 1019 (1128) .+++|.|.| .|.+|...++.++.+|+++++ .+...++.. ..+.|... .++.+.+++ .|+|+-++. T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187) T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187) T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC Confidence 357899999 599999999999999997554 444333322 33455433 256665555 899997775 Q ss_pred CCcccccccCHHHHccCCCCcEEEEcCC Q psy13054 1020 LTKDTEQLIGRKQFSLMKPTAILVNTSR 1047 (1128) Q Consensus 1020 lt~~T~~li~~~~l~~mk~ga~lIN~aR 1047 (1128) . ++ -...++.++++..++.++. T Consensus 110 g--~~----~~~~~~~l~~~G~iv~~G~ 131 (187) T d1vj1a2 110 G--DI----SNTVISQMNENSHIILCGQ 131 (187) T ss_dssp H--HH----HHHHHTTEEEEEEEEEC-- T ss_pred c--hh----HHHHhhhccccccEEEecc Confidence 1 21 2467888999999998864 |
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351] Probab=81.23 E-value=0.75 Score=41.76 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=32.1 Q ss_pred cCCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 954 LKGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 954 L~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) ..+|+|.|||.|.+|-++|..|..+|.+|.++.... T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123) T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123) T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS T ss_pred cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecC Confidence 357899999999999999999999999999987543 |
>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408] Probab=81.20 E-value=0.56 Score=45.87 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=35.6 Q ss_pred ccCCCCCCEEEEEe-cChhhHHHHHHHhhCCCeEEEEcCCC Q psy13054 695 NIMGLKGATVGIVG-LGNIGLETAKLLKAFKVSKILYTSRR 734 (1128) Q Consensus 695 ~~~~l~gktvGIiG-~G~IG~~va~r~~afg~~vi~y~~~~ 734 (1128) .+.+|+||++-|.| -|.||+++|+.+...|++|+..++.. T Consensus 17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191) T d1luaa1 17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191) T ss_dssp TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH T ss_pred cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch Confidence 35679999999999 68999999999999999999988753 |
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811] Probab=80.95 E-value=0.68 Score=44.02 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=29.7 Q ss_pred CCCEEEEEecChhhHHHHHHHhhCCC-eEEEEcCCCcc Q psy13054 700 KGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVK 736 (1128) Q Consensus 700 ~gktvGIiG~G~IG~~va~r~~afg~-~vi~y~~~~~~ 736 (1128) +-++|+|||.|++|+.+|-.+.-.++ ++++||....+ T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~ 43 (154) T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGM 43 (154) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSH T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecccc Confidence 56899999999999999988775553 88899865433 |
>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606] Probab=80.93 E-value=0.91 Score=46.13 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=33.8 Q ss_pred ccCCCeEEEEEc-ChhhHHHHHHHhhCCCEEEEEeCCCC Q psy13054 953 GLKGATVGIVGL-GNIGLETAKLLKAFKVSKILYTSRRV 990 (1128) Q Consensus 953 ~L~gktvGIIG~-G~IG~~vA~~l~afG~~Vi~~d~~~~ 990 (1128) .|.||++.|.|. +.||+++|+.|...|++|++.+++.+ T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~ 42 (244) T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA 42 (244) T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHH Confidence 589999999998 57999999999999999999986544 |
>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076] Probab=80.84 E-value=0.43 Score=49.16 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=33.6 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCC Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRV 990 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~ 990 (1128) +|.||++.|.|.+ .||+++|+.|..-|++|++.+++.+ T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~ 43 (259) T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK 43 (259) T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH Confidence 4899999999995 6999999999999999999986543 |
>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049] Probab=80.82 E-value=0.6 Score=43.63 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=30.9 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCC--CEEEEEeCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFK--VSKILYTSRR 989 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG--~~Vi~~d~~~ 989 (1128) .||+|.|||.|.+|-.+|..|+.+| .+|.++++.. T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186) T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186) T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC Confidence 4899999999999999999998877 5888887665 |
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306] Probab=80.77 E-value=0.79 Score=41.57 Aligned_cols=35 Identities=31% Similarity=0.302 Sum_probs=31.7 Q ss_pred CCCeEEEEEcChhhHHHHHHHhhCCCEEEEEeCCC Q psy13054 955 KGATVGIVGLGNIGLETAKLLKAFKVSKILYTSRR 989 (1128) Q Consensus 955 ~gktvGIIG~G~IG~~vA~~l~afG~~Vi~~d~~~ 989 (1128) .++++.|||.|.+|-++|..|+..|.+|.++++.. T Consensus 29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 63 (121) T d1d7ya2 29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63 (121) T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS T ss_pred cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc Confidence 36899999999999999999999999999997554 |
>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606] Probab=80.76 E-value=0.88 Score=50.38 Aligned_cols=84 Identities=17% Similarity=0.132 Sum_probs=57.3 Q ss_pred ccCCCeEEEEEcChhhHHHHHHHhhCCC-EEEEEeCCCCchh--h-------hhc-----------------CCc--c-- Q psy13054 953 GLKGATVGIVGLGNIGLETAKLLKAFKV-SKILYTSRRVKEE--G-------TAL-----------------GAQ--L-- 1001 (1128) Q Consensus 953 ~L~gktvGIIG~G~IG~~vA~~l~afG~-~Vi~~d~~~~~~~--~-------~~~-----------------g~~--~-- 1001 (1128) -|++++|.|||+|.+|.++++.|...|. ++.++|...-... . .+. .++ . T Consensus 34 ~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426) T d1yovb1 34 LLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426) T ss_dssp HHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC T ss_pred HHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee Confidence 4788999999999999999999987777 6778876542111 0 000 111 0 Q ss_pred ----cChHhhhccCCEEEEecCCCcccccccCHHHHccCC Q psy13054 1002 ----VPLDTLCAESDFIFVTCALTKDTEQLIGRKQFSLMK 1037 (1128) Q Consensus 1002 ----~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk 1037 (1128) ...++++++.|+|+.++- +.++|..+|+..+...| T Consensus 114 ~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k 152 (426) T d1yovb1 114 NKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN 152 (426) T ss_dssp SCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC T ss_pred ccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc Confidence 013567889999887665 66778888876665443 |
>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090] Probab=80.65 E-value=0.96 Score=45.92 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=33.5 Q ss_pred ccCCCeEEEEEcC-hhhHHHHHHHhhCCCEEEEEeCCCC Q psy13054 953 GLKGATVGIVGLG-NIGLETAKLLKAFKVSKILYTSRRV 990 (1128) Q Consensus 953 ~L~gktvGIIG~G-~IG~~vA~~l~afG~~Vi~~d~~~~ 990 (1128) +|.||++.|.|.+ .||+++|+.|...|++|++.+++.+ T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~ 40 (242) T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS 40 (242) T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH Confidence 5889999999984 6999999999999999999886543 |
>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423] Probab=80.38 E-value=1.4 Score=42.34 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=63.7 Q ss_pred CeEEEEEcChhhHH--HHHHHhhC----CCEEEEEeCCCCchh--hh-------hcCC--c---ccChHhhhccCCEEEE Q psy13054 957 ATVGIVGLGNIGLE--TAKLLKAF----KVSKILYTSRRVKEE--GT-------ALGA--Q---LVPLDTLCAESDFIFV 1016 (1128) Q Consensus 957 ktvGIIG~G~IG~~--vA~~l~af----G~~Vi~~d~~~~~~~--~~-------~~g~--~---~~~l~ell~~sDvV~l 1016 (1128) -+|.|||.|.+|.. +...++.. +-+++.+|...++.+ +. ..+. + ..+..|.++.||+|++ T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvi 83 (167) T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA 83 (167) T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEE Confidence 47999999999865 33444322 237889987765543 11 1122 1 2378899999999999 Q ss_pred ecCCCcc-----------cccccC----------------------HHHHccCCCCcEEEEcCCCcccCHHHHHHH Q psy13054 1017 TCALTKD-----------TEQLIG----------------------RKQFSLMKPTAILVNTSRGGLLDQEALVEF 1059 (1128) Q Consensus 1017 ~lPlt~~-----------T~~li~----------------------~~~l~~mk~ga~lIN~aRG~lVde~aL~~a 1059 (1128) +.-.... ..|+.. .+.+.+..|+|++||++-.--+-..++.+. T Consensus 84 tag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~~k~ 159 (167) T d1u8xx1 84 HIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL 159 (167) T ss_dssp CCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHH T ss_pred CCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHHHH Confidence 8753111 111111 123455579999999988765555555554 |
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833] Probab=80.12 E-value=0.85 Score=41.10 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=30.8 Q ss_pred CCEEEEEecChhhHHHHHHHhhCCCeEEEEcCC Q psy13054 701 GATVGIVGLGNIGLETAKLLKAFKVSKILYTSR 733 (1128) Q Consensus 701 gktvGIiG~G~IG~~va~r~~afg~~vi~y~~~ 733 (1128) .|+|.|||-|.||.++|..++.+|.+|..+++. T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~ 54 (117) T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG 54 (117) T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehh Confidence 489999999999999999999999999999864 |