Psyllid ID: psy13058

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALHR
ccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHcc
ccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHccccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHccHHHHcccccHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHc
MESQPSLDTVYAVVHTLylnpnktekEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFfelpseshvSLRDSLIEHLcrtndtsgKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCqancgdnvSLQTKVLKCFtswssgslhdaATDCVSALHR
mesqpsldtVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCftswssgslhdAATDCVSALHR
MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQlalaladlalQMSAWEKPVVYIIEKLSHKGSIlallevltvlpeevnvlKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALHR
*******DTVYAVVHTLYLNPNKT***KASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAAT********
****PSLDTVYAVVHTLYLN******EKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLL*QNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQAN****VSLQTKVLKCFTSWSSGSLHDAATDCVSALHR
********TVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALHR
****PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALHR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWSSGSLHDAATDCVSALHR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query238 2.2.26 [Sep-21-2011]
Q6P2B1 923 Transportin-3 OS=Mus musc yes N/A 0.920 0.237 0.400 8e-39
Q9Y5L0 923 Transportin-3 OS=Homo sap no N/A 0.920 0.237 0.400 9e-39
Q9USZ2 955 Uncharacterized protein C yes N/A 0.735 0.183 0.312 2e-18
Q99189 972 mRNA transport regulator yes N/A 0.764 0.187 0.345 1e-14
A7YWD2 963 Importin-13 OS=Bos taurus no N/A 0.836 0.206 0.303 3e-12
Q8K0C1 963 Importin-13 OS=Mus muscul no N/A 0.836 0.206 0.303 4e-12
O94829 963 Importin-13 OS=Homo sapie no N/A 0.836 0.206 0.303 6e-12
Q5R974 963 Importin-13 OS=Pongo abel no N/A 0.836 0.206 0.303 1e-11
Q9JM04 963 Importin-13 OS=Rattus nor no N/A 0.836 0.206 0.299 5e-11
Q54C85 1064 Importin-13 homolog A OS= yes N/A 0.848 0.189 0.262 5e-07
>sp|Q6P2B1|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1 Back     alignment and function desciption
 Score =  160 bits (405), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 107/267 (40%), Positives = 155/267 (58%), Gaps = 48/267 (17%)

Query: 3   SQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEM 62
           ++P+L  VY  V  LY +P+ + KE+AS WL +LQ+S++AW+I+D++L            
Sbjct: 4   AKPTLQLVYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLL------------ 51

Query: 63  LLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQ 122
              Q    +E+ YF+AQTM+ K+Q +F+ELP++SH SLRDSL+ H+    D S   I+TQ
Sbjct: 52  ---QIRQDVESCYFAAQTMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLS-PVIVTQ 107

Query: 123 LALALADLALQMSAWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVN--VLKLGKNRRE 179
           LALA+ADLALQM +W+  V  ++EK S+   S+  LLE+LTVLPEEV+   L++G NRR 
Sbjct: 108 LALAIADLALQMPSWKGCVQTLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRT 167

Query: 180 EFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW------------------- 220
           E  E+L      V+  L TC    G +  +  KV +C  SW                   
Sbjct: 168 EIIEDLAFYSSTVVSLLMTCVEKAGTDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLAL 227

Query: 221 ---------SSGSLHDAATDCV-SALH 237
                    +S +LH+AA+DCV SAL+
Sbjct: 228 LFEVLQQDKTSSNLHEAASDCVCSALY 254
Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Mus musculus (taxid: 10090)
>sp|Q9Y5L0|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3 Back     alignment and function description
>sp|Q9USZ2|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2 Back     alignment and function description
>sp|Q99189|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1 Back     alignment and function description
>sp|A7YWD2|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0C1|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1 Back     alignment and function description
>sp|O94829|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3 Back     alignment and function description
>sp|Q5R974|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1 Back     alignment and function description
>sp|Q9JM04|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1 Back     alignment and function description
>sp|Q54C85|IP13A_DICDI Importin-13 homolog A OS=Dictyostelium discoideum GN=ipo13A PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
156543529 948 PREDICTED: transportin-3-like [Nasonia v 0.915 0.229 0.456 7e-54
307181092 921 Transportin-3 [Camponotus floridanus] 0.911 0.235 0.444 2e-52
91080171 936 PREDICTED: similar to transportin [Tribo 0.924 0.235 0.422 5e-51
270005671 917 hypothetical protein TcasGA2_TC007765 [T 0.924 0.239 0.422 6e-51
383865979 955 PREDICTED: transportin-3 [Megachile rotu 0.928 0.231 0.456 2e-49
340728386 953 PREDICTED: transportin-3-like [Bombus te 0.928 0.231 0.452 9e-49
350402957 951 PREDICTED: transportin-3-like [Bombus im 0.928 0.232 0.452 9e-49
307213698 952 Transportin-3 [Harpegnathos saltator] 0.928 0.232 0.460 5e-48
328787847 879 PREDICTED: transportin-3 [Apis mellifera 0.928 0.251 0.452 5e-48
380021560 950 PREDICTED: transportin-3 [Apis florea] 0.928 0.232 0.452 6e-48
>gi|156543529|ref|XP_001602761.1| PREDICTED: transportin-3-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  216 bits (549), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 121/265 (45%), Positives = 160/265 (60%), Gaps = 47/265 (17%)

Query: 1   MESQPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIAD 60
           M+S PSL+TVY  V++LY NP+  EKE+ASQWL +LQKS+YAWKI             AD
Sbjct: 1   MDSMPSLETVYQAVYSLYNNPDTAEKERASQWLGELQKSVYAWKI-------------AD 47

Query: 61  EMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNII 120
           EML  Q +  LE+ YF+AQTMR K+Q +F ELP  SHVSLRDSL++H+ + N  +   I+
Sbjct: 48  EML--QQKKDLESCYFAAQTMRTKIQQSFHELPVVSHVSLRDSLLDHISQINKNTNAIIV 105

Query: 121 TQLALALADLALQMSAWEKPVVYIIEKLS-HKGSILALLEVLTVLPEEVN--VLKLGKNR 177
           TQL LALADL LQM++W++PV+ +++K   +  S+  LLE+LTVLPEEVN   L+LG NR
Sbjct: 106 TQLCLALADLILQMASWQEPVIDLLQKFGDNPASLWPLLEILTVLPEEVNSRFLRLGANR 165

Query: 178 REEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW----------------- 220
           R+         G  V+EFL  C  N  D+  +  +VL+CFTSW                 
Sbjct: 166 RQNIVTNFTNNGNGVLEFLTVCLKNI-DDAQIYVRVLRCFTSWITIHAISLTTPLFNTII 224

Query: 221 -----------SSGSLHDAATDCVS 234
                      +   LH+AA DCVS
Sbjct: 225 TLAFEVLKNNMTGSQLHEAAADCVS 249

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307181092|gb|EFN68837.1| Transportin-3 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|91080171|ref|XP_970238.1| PREDICTED: similar to transportin [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270005671|gb|EFA02119.1| hypothetical protein TcasGA2_TC007765 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383865979|ref|XP_003708449.1| PREDICTED: transportin-3 [Megachile rotundata] Back     alignment and taxonomy information
>gi|340728386|ref|XP_003402506.1| PREDICTED: transportin-3-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350402957|ref|XP_003486657.1| PREDICTED: transportin-3-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307213698|gb|EFN89047.1| Transportin-3 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328787847|ref|XP_001121919.2| PREDICTED: transportin-3 [Apis mellifera] Back     alignment and taxonomy information
>gi|380021560|ref|XP_003694631.1| PREDICTED: transportin-3 [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query238
ZFIN|ZDB-GENE-040426-708 923 tnpo3 "transportin 3" [Danio r 0.857 0.221 0.352 9.6e-31
UNIPROTKB|F1SMQ0 921 TNPO3 "Uncharacterized protein 0.857 0.221 0.339 9.7e-31
UNIPROTKB|A5D7C4 923 TNPO3 "TNPO3 protein" [Bos tau 0.857 0.221 0.339 9.7e-31
UNIPROTKB|Q9Y5L0 923 TNPO3 "Transportin-3" [Homo sa 0.857 0.221 0.339 9.7e-31
MGI|MGI:1196412 923 Tnpo3 "transportin 3" [Mus mus 0.857 0.221 0.339 9.7e-31
RGD|1308938 929 Tnpo3 "transportin 3" [Rattus 0.857 0.219 0.339 1e-30
UNIPROTKB|C9J7E5 957 TNPO3 "Uncharacterized protein 0.857 0.213 0.339 1.1e-30
FB|FBgn0031456 932 Trn-SR "Transportin-Serine/Arg 0.840 0.214 0.351 4.6e-30
UNIPROTKB|H9L0A9 855 H9L0A9 "Uncharacterized protei 0.693 0.192 0.327 8.5e-24
UNIPROTKB|E9PFH4 857 TNPO3 "Transportin-3" [Homo sa 0.584 0.162 0.314 4.3e-17
ZFIN|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 325 (119.5 bits), Expect = 9.6e-31, Sum P(2) = 9.6e-31
 Identities = 79/224 (35%), Positives = 117/224 (52%)

Query:     1 MES-QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIA 59
             ME  +P+L  VY  V  LY +P+   KE+AS WL +LQ+S+YAW+I+D++L+        
Sbjct:     1 MEGGKPTLPLVYQAVQALYHDPDPAGKERASVWLGELQRSMYAWEISDQLLQ-------- 52

Query:    60 DEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNI 119
                 L Q+   +E+ YF+AQTM+ K+Q +F+ELP +SH +LRDSL+ H+    D S   I
Sbjct:    53 ----LKQD---IESCYFAAQTMKMKIQTSFYELPPDSHTALRDSLLSHIQNLKDLS-PII 104

Query:   120 ITQXXXXXXXXXXQMSAWEKPVVYIIEKLSHKGSIXXXXXXXXXXX---XXXXXXKLGKN 176
             +TQ          QM++W+  V  +IEK S+  S                     ++G N
Sbjct:   105 VTQLALAIADLALQMASWKGCVHTLIEKYSNDVSSMTFLIEILTVLPEEVHSRSLRIGAN 164

Query:   177 RREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
             RR E  E+L      V+  L TC    G +  +  KV +C  SW
Sbjct:   165 RRTEIIEDLAYYSTTVVTLLVTCAEKSGHDEKMLIKVFRCLGSW 208
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0005643 "nuclear pore" evidence=IEA
UNIPROTKB|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0031456 Trn-SR "Transportin-Serine/Arginine rich" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|H9L0A9 H9L0A9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E9PFH4 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
pfam08389147 pfam08389, Xpo1, Exportin 1-like protein 6e-15
>gnl|CDD|219817 pfam08389, Xpo1, Exportin 1-like protein Back     alignment and domain information 
 Score = 69.2 bits (170), Expect = 6e-15
 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 117 KNIITQLALALADLALQM--SAWEKPVVYIIEKL-SHKGSILALLEVLTVLPEEV---NV 170
           K I  +LALALA+LA Q   S W      ++  L S       LL +L VLPEE+   + 
Sbjct: 2   KFIRNKLALALAELAKQEWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFDFSR 61

Query: 171 LKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVS-LQTKVLKCFTSWSS 222
             L + RR   ++ L++  P ++E L     N     S L +  LKC  SW S
Sbjct: 62  TPLTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSELLSATLKCLGSWLS 114

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 238
KOG2081|consensus 559 100.0
KOG2022|consensus 982 99.95
KOG2021|consensus 980 99.95
COG5101 1053 CRM1 Importin beta-related nuclear transport recep 99.87
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 99.75
KOG2020|consensus 1041 99.66
KOG1410|consensus 1082 99.54
KOG2171|consensus 1075 99.39
KOG1991|consensus 1010 99.21
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 99.16
KOG1241|consensus 859 98.82
KOG1993|consensus 978 98.46
KOG1992|consensus 960 98.28
COG5656 970 SXM1 Importin, protein involved in nuclear import 98.2
KOG2023|consensus 885 98.15
COG5657 947 CSE1 CAS/CSE protein involved in chromosome segreg 97.96
KOG2274|consensus 1005 97.94
COG5215 858 KAP95 Karyopherin (importin) beta [Intracellular t 97.83
KOG1824|consensus 1233 92.98
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 88.52
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 87.2
PF08167165 RIX1: rRNA processing/ribosome biogenesis 85.72
>KOG2081|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.5e-32  Score=245.84  Aligned_cols=196  Identities=44%  Similarity=0.694  Sum_probs=183.0

Q ss_pred             HHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHHhhcccCCCChhhHHHHHHHHHH
Q psy13058         27 EKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIE  106 (238)
Q Consensus        27 ~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~ki~~~~~~l~~~~~~~lr~~Ll~  106 (238)
                      ..|+.||.+||+|+++|.+|.++|..               ..+.+..+|||||++.||+++|+++|+.....+|+++++
T Consensus         2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~---------------~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~t   66 (559)
T KOG2081|consen    2 EKANNWLGNFQKSNDAWQICEEILSQ---------------KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLIT   66 (559)
T ss_pred             chHhHHHHHhCCChHHHHHHHHHHcc---------------cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHH
Confidence            46999999999999999999999998               589999999999999999999999999999999999999


Q ss_pred             HHHHhccCCchhHHHHHHHHHHHHHhccCCCchHHHHHHHHhCcc-cchHHHHHHHhhhHhhhhcccC--ChhhHHHHHH
Q psy13058        107 HLCRTNDTSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHK-GSILALLEVLTVLPEEVNVLKL--GKNRREEFEE  183 (238)
Q Consensus       107 ~l~~~~~~~~~~v~~kL~~~la~l~~~~~~W~~~i~~l~~~~~~~-~~~~~~L~iL~~l~eEv~~~~l--~~~rr~~l~~  183 (238)
                      ++.....+++ .++++|+.++|++++++++|.+++.+++..+++. ..++++|++|+++|||+.++++  ...||.++++
T Consensus        67 hl~~l~~~~~-~i~tQL~vavA~Lal~~~~W~n~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~  145 (559)
T KOG2081|consen   67 HLKELHDHPD-VIRTQLAVAVAALALHMPEWVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFID  145 (559)
T ss_pred             HHHHHHhCCc-hHHHHHHHHHHHHHHHhHhhcchHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHH
Confidence            9998887776 9999999999999999999999999999998775 4589999999999999999554  5789999999


Q ss_pred             HHHHhhhHHHHHHHHHHhccCCC-HHHHHHHHHHhhhcc-------------------------CchhHHHHHHHHHhhc
Q psy13058        184 ELKAAGPIVIEFLKTCQANCGDN-VSLQTKVLKCFTSWS-------------------------SGSLHDAATDCVSALH  237 (238)
Q Consensus       184 ~l~~~~~~vl~~L~~~l~~~~~~-~~~~~~~l~c~~sWi-------------------------~~~l~~~a~~~l~e~~  237 (238)
                      ++..+.+.++.++..+++..+.+ ....+++|+|++||.                         .++++++|++|+|+++
T Consensus       146 ~l~~~~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll  225 (559)
T KOG2081|consen  146 ELAAQVSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALL  225 (559)
T ss_pred             HHHHhHHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHH
Confidence            99999999999999999998766 778999999999998                         7999999999999986


Q ss_pred             C
Q psy13058        238 R  238 (238)
Q Consensus       238 ~  238 (238)
                      +
T Consensus       226 ~  226 (559)
T KOG2081|consen  226 Y  226 (559)
T ss_pred             H
Confidence            3

>KOG2022|consensus Back     alignment and domain information
>KOG2021|consensus Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG2020|consensus Back     alignment and domain information
>KOG1410|consensus Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information
>KOG1991|consensus Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG1241|consensus Back     alignment and domain information
>KOG1993|consensus Back     alignment and domain information
>KOG1992|consensus Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2274|consensus Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1824|consensus Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
2xwu_B 963 Crystal Structure Of Importin 13 - Ubc9 Complex Len 6e-06
2x19_B 963 Crystal Structure Of Importin13 - Rangtp Complex Le 1e-04
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963 Back     alignment and structure 
Iteration: 1

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 85/224 (37%), Gaps = 25/224 (11%)
Query: 6   SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLH 65
           +++ V   +H LY +PN   K  A +WL Q Q S  AW          ++W+     LL 
Sbjct: 22  TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWH---------FSWQ-----LLQ 67
Query: 66  QNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQXXX 125
            +++  E  YF A  +  K+   + ++P++ + SL+  L   + R    S K ++T+   
Sbjct: 68  PDKVP-EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRLCV 125
Query: 126 XXXXXXXQM--SAWEKPVVYIIE-------KLSHKGSIXXXXXXXXXXXXXXXXXKLGKN 176
                   M   AW   V  ++         +  +G                   +L + 
Sbjct: 126 ALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQY 185
Query: 177 RREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
           R+      L      V   L+           ++ KVLKCF+SW
Sbjct: 186 RKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSW 229
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query238
2x19_B 963 Importin-13; nuclear transport, protein transport; 2e-29
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 4e-23
2x1g_F 971 Cadmus; transport protein, developmental protein, 9e-23
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 2e-22
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 5e-22
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 8e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
 Score =  114 bits (286), Expect = 2e-29
 Identities = 67/226 (29%), Positives = 102/226 (45%), Gaps = 25/226 (11%)

Query: 4   QPSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEML 63
             +++ V   +H LY +PN   K  A +WL Q Q S  AW  + ++L             
Sbjct: 20  DFTVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLL------------- 66

Query: 64  LHQNELGLEAVYFSAQTMRQKVQNAFFELPSESHVSLRDSLIEHLCRTNDTSGKNIITQL 123
             Q +   E  YF A  +  K+   + ++P++ + SL+  L   + R    S K ++T+L
Sbjct: 67  --QPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGS-KIVLTRL 123

Query: 124 ALALADLALQM--SAWEKPVVYIIEKLSHKGS-------ILALLEVLTVLPEEVNVLKLG 174
            +ALA LAL M   AW   V  ++     + S        LALLE+LTVLPEE    +L 
Sbjct: 124 CVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLP 183

Query: 175 KNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
           + R+      L      V   L+           ++ KVLKCF+SW
Sbjct: 184 QYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSW 229
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
4hat_C 1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
3gjx_A 1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
2x19_B 963 Importin-13; nuclear transport, protein transport; 99.97
3ibv_A 980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.97
2x1g_F 971 Cadmus; transport protein, developmental protein, 99.96
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.95
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.94
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 99.68
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 99.62
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 99.57
1ibr_B 462 P95, importin beta-1 subunit, nuclear factor; smal 99.52
1qgr_A 876 Protein (importin beta subunit); transport recepto 99.38
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 96.87
2vgl_B 591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 94.02
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 90.94
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 89.45
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 88.41
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 87.03
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 85.91
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 85.56
3ul1_B 510 Importin subunit alpha-2; arm repeat, armadillo re 85.2
4b8j_A 528 Importin subunit alpha-1A; transport protein, nucl 83.72
1w63_A 618 Adapter-related protein complex 1 gamma 1 subunit; 81.2
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 80.74
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 80.11
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 80.11
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
Probab=100.00  E-value=8.6e-33  Score=274.66  Aligned_cols=217  Identities=16%  Similarity=0.268  Sum_probs=193.0

Q ss_pred             CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHH
Q psy13058          5 PSLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK   84 (238)
Q Consensus         5 ~~l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~k   84 (238)
                      .+++++++++.++|+|+++ .|++|++||++||++|++|..|..+|..               +.++++||||+++|+++
T Consensus        13 ~dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~---------------s~~~~vR~faa~~Lk~~   76 (1023)
T 4hat_C           13 LDIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF---------------STNPQSKFIALSILDKL   76 (1023)
T ss_dssp             CCHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH---------------CCCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC---------------CCCHHHHHHHHHHHHHH
Confidence            5899999999999988765 9999999999999999999999999987               57899999999999999


Q ss_pred             hhcccCCCChhhHHHHHHHHHHHHHHhccCC-----chhHHHHHHHHHHHHHhcc-C-CCchHHHHHHHHhCcc-cchHH
Q psy13058         85 VQNAFFELPSESHVSLRDSLIEHLCRTNDTS-----GKNIITQLALALADLALQM-S-AWEKPVVYIIEKLSHK-GSILA  156 (238)
Q Consensus        85 i~~~~~~l~~~~~~~lr~~Ll~~l~~~~~~~-----~~~v~~kL~~~la~l~~~~-~-~W~~~i~~l~~~~~~~-~~~~~  156 (238)
                      |+++|..++++++..||+.|++++..+..++     ++++++|+|.+++.++.+. | .||+++.+++..++++ .++.+
T Consensus        77 I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~  156 (1023)
T 4hat_C           77 ITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCEN  156 (1023)
T ss_dssp             HHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHH
T ss_pred             HHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHH
Confidence            9999999999999999999999998765432     3699999999999999986 3 6999999999999876 56889


Q ss_pred             HHHHHhhhHhhhhc---ccCChhhHHHHHHHHHHhhhHHHHHHHHHHhccCCCHHHHHHHHHHhhhcc------------
Q psy13058        157 LLEVLTVLPEEVNV---LKLGKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSWS------------  221 (238)
Q Consensus       157 ~L~iL~~l~eEv~~---~~l~~~rr~~l~~~l~~~~~~vl~~L~~~l~~~~~~~~~~~~~l~c~~sWi------------  221 (238)
                      +|.+|+.|+||+.+   ..++..||..+++.|+.+.|.|++++..+++.. .+.++...+|+|+.+|+            
T Consensus       157 ~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~i~~i~~~~  235 (1023)
T 4hat_C          157 NMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIPYRYIYETN  235 (1023)
T ss_dssp             HHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSCTHHHHSSS
T ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCCHHHhcchh
Confidence            99999999999977   345678899999999999999999999999875 34566777777777655            


Q ss_pred             -----------CchhHHHHHHHHHhhcC
Q psy13058        222 -----------SGSLHDAATDCVSALHR  238 (238)
Q Consensus       222 -----------~~~l~~~a~~~l~e~~~  238 (238)
                                 .+++|++|+|||++|++
T Consensus       236 ll~~l~~~~L~~~~~r~~A~ecL~eIv~  263 (1023)
T 4hat_C          236 ILELLSTKFMTSPDTRAITLKCLTEVSN  263 (1023)
T ss_dssp             HHHHHHTHHHHSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHc
Confidence                       68899999999999974
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 238
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 8e-05
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-04
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 8e-05
 Identities = 29/227 (12%), Positives = 79/227 (34%), Gaps = 32/227 (14%)

Query: 6   SLDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKSIYAWKIADEMLRHIYAWKIADEMLLH 65
           S      ++    L+P++  +  +   L +L    +            +A   +   +L 
Sbjct: 2   STAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQ----------FAGLSSQ--VLI 49

Query: 66  QNELGLEAVYFSAQTMRQKV------------QNAFFELPSESHVSLRDSLIEHLCRTND 113
                LE    +A T++ ++            Q    ++  E+   ++ + +  L  + +
Sbjct: 50  DENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIE 108

Query: 114 TSGKNIITQLALALADLALQMSAWEKPVVYIIEKLSHKGSILALLEVLTVLPEEVNVLKL 173
               N   QL  A+AD+ L   AW + +  +++    +         L  L        +
Sbjct: 109 PRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL------GYM 162

Query: 174 GKNRREEFEEELKAAGPIVIEFLKTCQANCGDNVSLQTKVLKCFTSW 220
            ++   + +  + ++  I+I  ++  Q+    + +++   L      
Sbjct: 163 CESADPQSQALVSSSNNILIAIVQGAQSTE-TSKAVRLAALNALADS 208
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query238
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.53
d1wa5c_ 959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.52
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1ibrb_ 458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.25
d1qbkb_ 888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.11
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 95.34
d1b3ua_ 588 Constant regulatory domain of protein phosphatase 90.8
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 90.49
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 90.05
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.4e-13  Score=128.02  Aligned_cols=146  Identities=14%  Similarity=0.205  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHHHHHHhhhhhhhHhhhhccCCchHHHHHHHHHHHHH
Q psy13058          7 LDTVYAVVHTLYLNPNKTEKEKASQWLHQLQKS--IYAWKIADEMLRHIYAWKIADEMLLHQNELGLEAVYFSAQTMRQK   84 (238)
Q Consensus         7 l~~v~~ai~~ly~~~d~~~~~qA~~~L~~fq~s--~~aW~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~~ffaaqtL~~k   84 (238)
                      .+++.+++...+.++|++.|++|+++|.+++++  ++.+..+..++.+              .+.+.++|++|+..|++.
T Consensus         3 ~~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--------------~~~~~~~r~~A~i~lkn~   68 (861)
T d2bpta1           3 TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--------------ENTKLEGRILAALTLKNE   68 (861)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--------------TTSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHc--------------CCCCHHHHHHHHHHHHHH
Confidence            578888888755567999999999999999987  6777777777765              367789999999999999


Q ss_pred             hhcccC------------CCChhhHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHhc-cC--CCchHHHHHHHHhC
Q psy13058         85 VQNAFF------------ELPSESHVSLRDSLIEHLCRTNDTSGKNIITQLALALADLALQ-MS--AWEKPVVYIIEKLS  149 (238)
Q Consensus        85 i~~~~~------------~l~~~~~~~lr~~Ll~~l~~~~~~~~~~v~~kL~~~la~l~~~-~~--~W~~~i~~l~~~~~  149 (238)
                      +.++|.            .++++.+..+|+.+++.+..   . ++.|++++|.+++.++.. .+  .||+.++.++..++
T Consensus        69 i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~---~-~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~  144 (861)
T d2bpta1          69 LVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVS---I-EPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTG  144 (861)
T ss_dssp             TCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTC---S-SHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTS
T ss_pred             hhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcC---C-CHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhc
Confidence            998874            58999999999999887742   3 358999999999998864 34  59999999999987


Q ss_pred             cc---cchHHHHHHHhhhHhhhhc
Q psy13058        150 HK---GSILALLEVLTVLPEEVNV  170 (238)
Q Consensus       150 ~~---~~~~~~L~iL~~l~eEv~~  170 (238)
                      ++   ......+.+|..+.|++..
T Consensus       145 s~~~~~~~~~al~~l~~i~e~~~~  168 (861)
T d2bpta1         145 AEQPENVKRASLLALGYMCESADP  168 (861)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHTSST
T ss_pred             CCCcHHHHHHHHHHHHHHHHHhhH
Confidence            64   2345678889888887655
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure