Psyllid ID: psy13065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MMEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINIAGKL
Secondary Structure (PSIPRED)
cccccccccccHHEEHHHHHcccccccccccccEEEEEccEEEEEEEEcccccccccccccccccccEEEEEccccccccccccEEEccccccccccEEEEcccHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHccccccccccccEEEEEEcccEEEEEEEccccccccccccHHHHHHHcEEEEHHHccccccccccccccccccccccEEEEEcccccccccccc
Coil and Loop (DISEMBL)
MMEEIMMNIISEAKQVLEetgfdsshliaedsylettyndqltrlylipgvpidfkfapqtrgeikacqwfpigdlpssrKEIKTVLIngtpvgtnaFFMIMPFINSINIAGKL
Flexible Loop (DISEMBL)
MMEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINIAGKL
Low Complexity Region (SEG)
mmeeimmniiseAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINIAGKL
Disordered region (IsUnstruct)
*********I****QVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINI****
Disordered Region (DISOPRED)
**EEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS*****************NAFFMIMPFINSINIAG**
Disordered Region (DISEMBL)
MMEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINIAGKL
Disordered Region (DISPRO)
****IMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR************VGTNAFFMIMPFINSINIA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINIAGKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q9CYC6	422	m7GpppN-mRNA hydrolase OS	yes	N/A	0.824	0.222	0.479	2e-19
Q5REQ8	385	m7GpppN-mRNA hydrolase OS	yes	N/A	0.824	0.244	0.468	4e-19
Q8IU60	420	m7GpppN-mRNA hydrolase OS	yes	N/A	0.824	0.223	0.468	4e-19
O62255	786	mRNA-decapping enzyme 2 O	yes	N/A	0.807	0.117	0.391	4e-15
O13828	741	mRNA decapping complex su	yes	N/A	0.745	0.114	0.369	4e-12
Q8GW31	373	mRNA-decapping enzyme sub	yes	N/A	0.789	0.241	0.357	1e-11
Q75BK1	880	mRNA-decapping enzyme sub	yes	N/A	0.5	0.064	0.421	1e-08
P53550	970	mRNA-decapping enzyme sub	yes	N/A	0.675	0.079	0.329	1e-05
A6ZRW5	970	mRNA-decapping enzyme sub	N/A	N/A	0.675	0.079	0.329	1e-05

>sp|Q9CYC6|DCP2_MOUSE m7GpppN-mRNA hydrolase OS=Mus musculus GN=Dcp2 PE=1 SV=2

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/96 (47%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 13  AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
           A++V EETGFD    I +D Y+E   NDQL RLY+IPGVP D KF P+TR EI+  +WF 
Sbjct: 142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNPKTRREIRNIEWFS 201

Query: 73  IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
           I  LP  R ++      G  +  N FFM +PFI  +
Sbjct: 202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235

Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Plays a role in replication-dependent histone mRNA degradation. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Has higher activity towards mRNAs that lack a poly(A) tail. Has no activity towards a cap structure lacking an RNA moiety.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2

>sp|Q5REQ8|DCP2_PONAB m7GpppN-mRNA hydrolase OS=Pongo abelii GN=DCP2 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 13  AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
           A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct: 142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 201

Query: 73  IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
           I  LP  R ++      G  +  N FFM +PFI  +
Sbjct: 202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235

Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Plays a role in replication-dependent histone mRNA degradation. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Has higher activity towards mRNAs that lack a poly(A) tail. Has no activity towards a cap structure lacking an RNA moiety.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q8IU60|DCP2_HUMAN m7GpppN-mRNA hydrolase OS=Homo sapiens GN=DCP2 PE=1 SV=2

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/96 (46%), Positives = 59/96 (61%), Gaps = 2/96 (2%)

Query: 13  AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
           A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct: 142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 201

Query: 73  IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
           I  LP  R ++      G  +  N FFM +PFI  +
Sbjct: 202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235

Necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Plays a role in replication-dependent histone mRNA degradation. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Has higher activity towards mRNAs that lack a poly(A) tail. Has no activity towards a cap structure lacking a RNA moiety.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|O62255|DCP2_CAEEL mRNA-decapping enzyme 2 OS=Caenorhabditis elegans GN=dcap-2 PE=2 SV=4

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 5/97 (5%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++  EETGFD      ++   +   ND + RLYL+  VP DF F PQTR EI+  +WF I
Sbjct: 287 RETFEETGFDFGIYSEKEKKFQRFINDGMVRLYLVKNVPKDFNFQPQTRKEIRKIEWFKI 346

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINI 110
            DLP+ + +     + G     N F+M+MPF+  I I
Sbjct: 347 DDLPTDKTDELPAYLQG-----NKFYMVMPFVKDIQI 378

RNA-decapping enzyme, activity is affected by RNA sequence. Does not bind cap. May contribute to gene regulation in multiple RNA pathways including monomethylguanosine- and trimethylgaunosine-capped RNAs.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|O13828|DCP2_SCHPO mRNA decapping complex subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcp2 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 7/92 (7%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++V EETGFD S  I  + +++ T   Q  RLY+IPG+ +D +F  +TR EI   +W  +
Sbjct: 142 REVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNL 201

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFI 105
            DLP+ +K       N      N F+M++PF+
Sbjct: 202 MDLPTFKK-------NKPQTMKNKFYMVIPFL 226

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8GW31|DCP2_ARATH mRNA-decapping enzyme subunit 2 OS=Arabidopsis thaliana GN=DCP2 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD S L+  + Y+E  +  Q  RLY++ GV  D  FAP T+ EI    W  +
Sbjct: 153 REVLEETGFDVSKLLKREEYIEFVFRQQRVRLYIVAGVTEDTVFAPLTKKEISEITWHRL 212

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             L  +  E+ T  ++G  +     +M+ PF++S+
Sbjct: 213 DHLQPASNEVITHGVSGLKL-----YMVAPFLSSL 242

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Essential for postembryonic development, especially during the formation of the shoot apical meristem (SAM).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q75BK1|DCP2_ASHGO mRNA-decapping enzyme subunit 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DCP2 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQW 70
           ++V+EE GFD ++ + ED Y+E     +  ++YL+ GVP DF F PQ R EI+  +W
Sbjct: 148 REVMEEIGFDLTNYVLEDQYIERNIGGKNYKIYLVKGVPQDFAFKPQVRNEIEKIEW 204

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P53550|DCP2_YEAST mRNA-decapping enzyme subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DCP2 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++V EE GFD +  I ++ ++E     +  +++LI GV   F F PQ R EI   +WF  
Sbjct: 148 REVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDF 207

Query: 74  GDLPSS--RKEIKTVLING 90
             +  +  +  IK  LIN 
Sbjct: 208 KKISKTMYKSNIKYYLINS 226

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A6ZRW5|DCP2_YEAS7 mRNA-decapping enzyme subunit 2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DCP2 PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++V EE GFD +  I ++ ++E     +  +++LI GV   F F PQ R EI   +WF  
Sbjct: 148 REVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDF 207

Query: 74  GDLPSS--RKEIKTVLING 90
             +  +  +  IK  LIN 
Sbjct: 208 KKISKTMYKSNIKYYLINS 226

Catalytic component of the decapping complex necessary for the degradation of mRNAs, both in normal mRNA turnover and in nonsense-mediated mRNA decay. Removes the 7-methyl guanine cap structure from mRNA molecules, yielding a 5'-phosphorylated mRNA fragment and 7m-GDP. Decapping is the major pathway of mRNA degradation in yeast. It occurs through deadenylation, decapping and subsequent 5' to 3' exonucleolytic decay of the transcript body.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
321475287	407	hypothetical protein DAPPUDRAFT_222252 [	0.815	0.228	0.578	6e-25
91078200	321	PREDICTED: similar to Decapping protein	0.833	0.295	0.515	2e-24
357624398	370	hypothetical protein KGM_19785 [Danaus p	0.824	0.254	0.520	7e-23
328780137	458	PREDICTED: mRNA-decapping enzyme 2 [Apis	0.815	0.203	0.515	4e-21
380022990	453	PREDICTED: mRNA-decapping enzyme 2-like	0.815	0.205	0.515	5e-21
383855990	458	PREDICTED: mRNA-decapping enzyme 2-like	0.789	0.196	0.521	9e-21
350416367	461	PREDICTED: mRNA-decapping enzyme 2-like	0.789	0.195	0.521	9e-21
350416370	451	PREDICTED: mRNA-decapping enzyme 2-like	0.789	0.199	0.521	9e-21
340717104	461	PREDICTED: mRNA-decapping enzyme 2-like	0.789	0.195	0.521	1e-20
340717106	451	PREDICTED: mRNA-decapping enzyme 2-like	0.789	0.199	0.521	1e-20

>gi|321475287|gb|EFX86250.1| hypothetical protein DAPPUDRAFT_222252 [Daphnia pulex]

 Score =  117 bits (294), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 74/95 (77%), Gaps = 2/95 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD SHLI+   +LETT NDQLTRLY+IPGVP + KF P+TR +I+A QWFPI
Sbjct: 159 REVLEETGFDISHLISVKEFLETTVNDQLTRLYIIPGVPHETKFIPRTRNDIRALQWFPI 218

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
            DLP+S+K+  T +  G  +G+++FFM+ PF+  I
Sbjct: 219 ADLPNSKKDAMTKVRLG--IGSSSFFMVFPFVRLI 251

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078200|ref|XP_968428.1| PREDICTED: similar to Decapping protein 2 CG6169-PA [Tribolium castaneum] gi|270001356|gb|EEZ97803.1| hypothetical protein TcasGA2_TC000167 [Tribolium castaneum]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/97 (51%), Positives = 72/97 (74%), Gaps = 2/97 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD ++ I+ D +LE T NDQL RLY+I  +P+D KF P+TR EIKAC+WFP+
Sbjct: 148 REVLEETGFDITNYISADEWLEATINDQLVRLYIIKNIPMDTKFQPKTRYEIKACEWFPV 207

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINI 110
            DLP+S+K++   +  G  V  NAFFM++PF+  + +
Sbjct: 208 ADLPNSKKDVTPKIKMG--VNANAFFMVLPFVKRLKM 242

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624398|gb|EHJ75183.1| hypothetical protein KGM_19785 [Danaus plexippus]

 Score =  111 bits (277), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/96 (52%), Positives = 70/96 (72%), Gaps = 2/96 (2%)

Query: 13  AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
           +++VLEETGFD S+LI +  Y+E T +DQ+ RLY+I  +  D KF P+TR EIKAC+WFP
Sbjct: 150 SREVLEETGFDISNLINKQDYIEATIHDQIARLYIIGNISRDTKFQPRTRNEIKACEWFP 209

Query: 73  IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
           I DLP++RK++   +  G  V  NAFFM++PF+  I
Sbjct: 210 IADLPANRKDMTPKVKMG--VSPNAFFMVLPFVKRI 243

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780137|ref|XP_395977.2| PREDICTED: mRNA-decapping enzyme 2 [Apis mellifera]

 Score =  105 bits (261), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 70/95 (73%), Gaps = 2/95 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD S+LI E+ Y+E+T N+QL RLY+I GV  D KF P+TR EIK  +WF +
Sbjct: 142 REVLEETGFDISNLIDENEYIESTINEQLVRLYIICGVQKDTKFQPKTRKEIKNVEWFSL 201

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
            DLP+++K++   +  G  VG NAFFM++PF+  +
Sbjct: 202 ADLPNNKKDMTPKVKTG--VGPNAFFMVIPFVRRM 234

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022990|ref|XP_003695315.1| PREDICTED: mRNA-decapping enzyme 2-like [Apis florea]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 70/95 (73%), Gaps = 2/95 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD S+LI E+ Y+E+T N+QL RLY+I GV  D KF P+TR EIK  +WF +
Sbjct: 142 REVLEETGFDISNLIDENEYIESTINEQLVRLYIICGVQKDTKFQPKTRKEIKNVEWFSL 201

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
            DLP+++K++   +  G  VG NAFFM++PF+  +
Sbjct: 202 ADLPNNKKDMTPKVKTG--VGPNAFFMVIPFVRRM 234

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855990|ref|XP_003703493.1| PREDICTED: mRNA-decapping enzyme 2-like [Megachile rotundata]

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 68/92 (73%), Gaps = 2/92 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD S+LI E+ Y+E+  N+QL RLY+I GV  D KF P+TR EIK  +WF +
Sbjct: 141 REVLEETGFDISNLIDENEYIESVINEQLVRLYIICGVQKDTKFQPKTRKEIKNVEWFSL 200

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFI 105
            DLP+++K++   +  G  VG NAFFM++PF+
Sbjct: 201 ADLPNNKKDMTPKVKTG--VGPNAFFMVIPFV 230

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416367|ref|XP_003490925.1| PREDICTED: mRNA-decapping enzyme 2-like isoform 1 [Bombus impatiens]

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 68/92 (73%), Gaps = 2/92 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD S+LI E+ Y+E+  N+QL RLY+I GV  D KF P+TR EIK  +WF +
Sbjct: 142 REVLEETGFDISNLIDENEYIESVINEQLVRLYIICGVQKDTKFQPKTRKEIKNVEWFSL 201

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFI 105
            DLP+++K++   +  G  VG NAFFM++PF+
Sbjct: 202 ADLPNNKKDMTPKVKTG--VGPNAFFMVIPFV 231

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416370|ref|XP_003490926.1| PREDICTED: mRNA-decapping enzyme 2-like isoform 2 [Bombus impatiens]

 Score =  103 bits (258), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 68/92 (73%), Gaps = 2/92 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD S+LI E+ Y+E+  N+QL RLY+I GV  D KF P+TR EIK  +WF +
Sbjct: 142 REVLEETGFDISNLIDENEYIESVINEQLVRLYIICGVQKDTKFQPKTRKEIKNVEWFSL 201

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFI 105
            DLP+++K++   +  G  VG NAFFM++PF+
Sbjct: 202 ADLPNNKKDMTPKVKTG--VGPNAFFMVIPFV 231

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717104|ref|XP_003397028.1| PREDICTED: mRNA-decapping enzyme 2-like isoform 1 [Bombus terrestris]

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 68/92 (73%), Gaps = 2/92 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD S+LI E+ Y+E+  N+QL RLY+I GV  D KF P+TR EIK  +WF +
Sbjct: 142 REVLEETGFDISNLIDENEYIESVINEQLVRLYIICGVQKDTKFQPKTRKEIKNVEWFSL 201

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFI 105
            DLP+++K++   +  G  VG NAFFM++PF+
Sbjct: 202 ADLPNNKKDMTPKVKTG--VGPNAFFMVIPFV 231

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717106|ref|XP_003397029.1| PREDICTED: mRNA-decapping enzyme 2-like isoform 2 [Bombus terrestris]

 Score =  103 bits (257), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 68/92 (73%), Gaps = 2/92 (2%)

Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++VLEETGFD S+LI E+ Y+E+  N+QL RLY+I GV  D KF P+TR EIK  +WF +
Sbjct: 142 REVLEETGFDISNLIDENEYIESVINEQLVRLYIICGVQKDTKFQPKTRKEIKNVEWFSL 201

Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFI 105
            DLP+++K++   +  G  VG NAFFM++PF+
Sbjct: 202 ADLPNNKKDMTPKVKTG--VGPNAFFMVIPFV 231

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
UNIPROTKB|Q5REQ8	385	DCP2 "m7GpppN-mRNA hydrolase"	0.824	0.244	0.468	5.5e-18
MGI|MGI:1917890	422	Dcp2 "DCP2 decapping enzyme ho	0.824	0.222	0.479	6.2e-18
RGD|1562909	422	Dcp2 "DCP2 decapping enzyme ho	0.824	0.222	0.479	6.2e-18
UNIPROTKB|H0Y9T5	402	DCP2 "m7GpppN-mRNA hydrolase"	0.824	0.233	0.468	6.7e-18
UNIPROTKB|J9NXF9	410	DCP2 "Uncharacterized protein"	0.824	0.229	0.468	7.2e-18
UNIPROTKB|F6Y2G7	412	DCP2 "Uncharacterized protein"	0.824	0.228	0.468	7.3e-18
UNIPROTKB|Q8IU60	420	DCP2 "m7GpppN-mRNA hydrolase"	0.824	0.223	0.468	7.9e-18
UNIPROTKB|J9NVA8	422	DCP2 "Uncharacterized protein"	0.824	0.222	0.468	8e-18
UNIPROTKB|E2QVY2	427	DCP2 "Uncharacterized protein"	0.824	0.220	0.468	8.3e-18
UNIPROTKB|F1RLG6	427	DCP2 "Uncharacterized protein"	0.824	0.220	0.468	8.3e-18

UNIPROTKB|Q5REQ8 DCP2 "m7GpppN-mRNA hydrolase" [Pongo abelii (taxid:9601)]

 Score = 222 (83.2 bits), Expect = 5.5e-18, P = 5.5e-18
 Identities = 45/96 (46%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct:   142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 201

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISS

GO:0071044 "histone mRNA catabolic process" evidence=ISS

MGI|MGI:1917890 Dcp2 "DCP2 decapping enzyme homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 223 (83.6 bits), Expect = 6.2e-18, P = 6.2e-18
 Identities = 46/96 (47%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPGVP D KF P+TR EI+  +WF 
Sbjct:   142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNPKTRREIRNIEWFS 201

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISO;IMP

GO:0016442 "RNA-induced silencing complex" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISO

GO:0071044 "histone mRNA catabolic process" evidence=ISO

RGD|1562909 Dcp2 "DCP2 decapping enzyme homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 223 (83.6 bits), Expect = 6.2e-18, P = 6.2e-18
 Identities = 46/96 (47%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPGVP D KF P+TR EI+  +WF 
Sbjct:   142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGVPKDTKFNPKTRREIRNIEWFS 201

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0016442 "RNA-induced silencing complex" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISO

GO:0071044 "histone mRNA catabolic process" evidence=ISO

UNIPROTKB|H0Y9T5 DCP2 "m7GpppN-mRNA hydrolase" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 6.7e-18, P = 6.7e-18
 Identities = 45/96 (46%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct:   124 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 183

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   184 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 217

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|J9NXF9 DCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 222 (83.2 bits), Expect = 7.2e-18, P = 7.2e-18
 Identities = 45/96 (46%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct:   125 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 184

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   185 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 218

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F6Y2G7 DCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 222 (83.2 bits), Expect = 7.3e-18, P = 7.3e-18
 Identities = 45/96 (46%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct:   129 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 188

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   189 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 222

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q8IU60 DCP2 "m7GpppN-mRNA hydrolase" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 7.9e-18, P = 7.9e-18
 Identities = 45/96 (46%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct:   142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 201

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235

GO:0030145 "manganese ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0071044 "histone mRNA catabolic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IMP

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0016442 "RNA-induced silencing complex" evidence=IDA

GO:0000288 "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0016896 "exoribonuclease activity, producing 5'-phosphomonoesters" evidence=TAS

GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay" evidence=TAS

UNIPROTKB|J9NVA8 DCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 222 (83.2 bits), Expect = 8.0e-18, P = 8.0e-18
 Identities = 45/96 (46%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct:   142 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 201

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   202 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 235

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2QVY2 DCP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 222 (83.2 bits), Expect = 8.3e-18, P = 8.3e-18
 Identities = 45/96 (46%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct:   144 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 203

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   204 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 237

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1RLG6 DCP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 8.3e-18, P = 8.3e-18
 Identities = 45/96 (46%), Positives = 59/96 (61%)

Query:    13 AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
             A++V EETGFD    I +D Y+E   NDQL RLY+IPG+P D KF P+TR EI+  +WF 
Sbjct:   143 AREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGIPKDTKFNPKTRREIRNIEWFS 202

Query:    73 IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
             I  LP  R ++      G  +  N FFM +PFI  +
Sbjct:   203 IEKLPCHRNDMTPKSKLG--LAPNKFFMAIPFIRPL 236

GO:0071044 "histone mRNA catabolic process" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
cd03672	145	cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), t	5e-31
pfam00293	133	pfam00293, NUDIX, NUDIX domain	0.002

>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

 Score =  106 bits (268), Expect = 5e-31
 Identities = 39/96 (40%), Positives = 55/96 (57%), Gaps = 6/96 (6%)

Query: 13  AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
            ++V EETGFD S  I +D Y+E     Q  +LY++PGVP D  F P+TR EI   +WF 
Sbjct: 45  IREVYEETGFDISKYIDKDDYIELIIRGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFD 104

Query: 73  IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
           I DLP+ +            + +N FFM++PFI  +
Sbjct: 105 IKDLPTKKN------KKIPGLNSNKFFMVIPFIKPL 134

Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Length = 145

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 16  VLEETGFDSS--HLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           + EETG       L+    Y     +        +  +            E+   +W P+
Sbjct: 52  LEEETGLRVLLLLLLGVLEYPAPGRDGGEHVHVFLAELLGGEPEPQPNEDEVSEVRWVPL 111

Query: 74  GDLP 77
            +L 
Sbjct: 112 EELL 115

Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.73
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.38
KOG2937|consensus	348		99.34
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.32
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.31
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.29
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.25
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.24
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.24
PLN02325	144	nudix hydrolase	99.22
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.22
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.21
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.19
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.19
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.18
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.18
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.17
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.17
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.17
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.16
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.15
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.15
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.14
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.14
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.14
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.13
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.13
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.13
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.12
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.11
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.1
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.08
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.08
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.08
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.08
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.07
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.06
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.06
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.05
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.04
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.03
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.03
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.02
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.0
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.0
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.0
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	98.99
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	98.99
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	98.96
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	98.95
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	98.94
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	98.93
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	98.92
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	98.87
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	98.83
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	98.81
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	98.8
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	98.8
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	98.8
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	98.79
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	98.79
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	98.78
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	98.77
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	98.75
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	98.73
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	98.73
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	98.71
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	98.69
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	98.68
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	98.67
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	98.67
PRK08999	312	hypothetical protein; Provisional	98.63
PRK10707	190	putative NUDIX hydrolase; Provisional	98.63
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	98.6
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	98.57
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	98.54
PLN02552	247	isopentenyl-diphosphate delta-isomerase	98.51
PLN03143	291	nudix hydrolase; Provisional	98.51
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	98.5
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	98.47
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	98.41
PLN02709	222	nudix hydrolase	98.28
KOG3041|consensus	225		97.96
KOG2839|consensus	145		97.87
PLN02791	770	Nudix hydrolase homolog	97.79
KOG3084|consensus	345		97.53
KOG0648|consensus	295		97.29
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	96.91
KOG3069|consensus	246		96.91
PLN02839	372	nudix hydrolase	96.83
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	96.11
KOG4432|consensus	405		89.22
KOG4432|consensus	405		86.17
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	83.55
KOG0142|consensus	225		83.37

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.73  E-value=1.1e-17  Score=118.06  Aligned_cols=105  Identities=38%  Similarity=0.681  Sum_probs=77.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      .+..||+.+||+||++||||+++..+.....|......++.+++|++..+.......+...+|+.+++||++++++.+..
T Consensus        34 ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~  113 (145)
T cd03672          34 INKDEDDHDCAIREVYEETGFDISKYIDKDDYIELIIRGQNVKLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKN  113 (145)
T ss_pred             CCCCcCHHHHHHHHHHHhhCccceeccccceeeecccCCcEEEEEEEecCCCCcccCcCChhhhheEEEeeHHHhhhhhh
Confidence            47789999999999999999999875433344443334556777877766544333444567999999999999998776


Q ss_pred             hhhhhhccCCCCCCCceEEEccchHhHHhhc
Q psy13065         82 EIKTVLINGTPVGTNAFFMIMPFINSINIAG  112 (114)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (114)
                      ..    +.  -..+.+|.++.||+-||+=|.
T Consensus       114 ~~----~~--~~~~~~~~~~~~~~~~~~~~~  138 (145)
T cd03672         114 KK----IP--GLNSNKFFMVIPFIKPLKKWI  138 (145)
T ss_pred             hc----cc--cccccceEEEhHHHHHHHHHH
Confidence            22    11  135789999999999998773

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.38  E-value=1.2e-12  Score=88.60  Aligned_cols=84  Identities=13%  Similarity=0.164  Sum_probs=54.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEE-EEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLT-RLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~-~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  ++....+.......+.+ .+|++....+.  ......+|+.+++||++++++.
T Consensus        37 ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~~l~~  114 (125)
T cd04679          37 VDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWVAPVYLAENFSGE--PRLMEPDKLLELGWFALDALPQ  114 (125)
T ss_pred             ccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEEEEEEEEeecCCc--cccCCCccccEEEEeCHHHCCc
Confidence            4678999999999999999999874  33322221122233433 34554433222  1223346899999999999998


Q ss_pred             Cchhhhhhh
Q psy13065         79 SRKEIKTVL   87 (114)
Q Consensus        79 ~~~~~~~~~   87 (114)
                      ...+.++..
T Consensus       115 ~l~~~~~~~  123 (125)
T cd04679         115 PLTRATRDA  123 (125)
T ss_pred             hhHHHHHHH
Confidence            777766654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>KOG2937|consensus

Probab=99.34  E-value=2.8e-13  Score=106.53  Aligned_cols=107  Identities=28%  Similarity=0.419  Sum_probs=88.3

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCchh
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRKE   82 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~~   82 (114)
                      .+.|+..+||+|||.||||.|++..+..+.|+.....++.+.+|++.++..++.+.|+.+.||+.+.|+.++++-.-...
T Consensus       116 ~kdesd~~caiReV~eetgfD~skql~~~e~Ie~nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t~~~  195 (348)
T KOG2937|consen  116 SKDESDSDCAIREVTEETGFDYSKQLQDNEGIETNIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPTDKK  195 (348)
T ss_pred             cccchhhhcchhcccchhhcCHHHHhccccCcccchhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcccccc
Confidence            35688999999999999999999988788888888889999999999999999999999999999999999998433332


Q ss_pred             hhhhhccCCCCCCCceEEEccchHhHHhhcc
Q psy13065         83 IKTVLINGTPVGTNAFFMIMPFINSINIAGK  113 (114)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (114)
                      -.++.    ..+..++||+.||+++|+=|+.
T Consensus       196 s~~k~----~~~~dk~~~~~~~l~vlkk~~~  222 (348)
T KOG2937|consen  196 SGPKG----VKSRDKNYMVCPFLRVLKKWIL  222 (348)
T ss_pred             cCCCc----cccchhhcccchHHHHHHHHHH
Confidence            22221    2223688999999999998763

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.32  E-value=4.8e-12  Score=84.49  Aligned_cols=83  Identities=14%  Similarity=0.127  Sum_probs=54.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceee-eeeecceeeeec-cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSS-HLIAEDSYLETT-YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~-~li~~~~y~~~~-~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++. .......+.... .....+.+|.+.......   ....+|+.+++||+++++|..
T Consensus        32 ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~~~E~~~~~w~~~~~l~~~  108 (120)
T cd04680          32 LERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIVFRARADTQPV---IRPSHEISEARFFPPDALPEP  108 (120)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEEEEecccCCCc---cCCcccEEEEEEECHHHCccc
Confidence            467899999999999999999998 422111222111 123445556665433221   234579999999999999987


Q ss_pred             chhhhhhh
Q psy13065         80 RKEIKTVL   87 (114)
Q Consensus        80 ~~~~~~~~   87 (114)
                      ..+..+..
T Consensus       109 ~~~~~~~~  116 (120)
T cd04680         109 TTPATRRR  116 (120)
T ss_pred             CChHHHHH
Confidence            66555443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.31  E-value=4.7e-12  Score=88.46  Aligned_cols=78  Identities=19%  Similarity=0.236  Sum_probs=52.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe--EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ--LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~--~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++........|......+.  ..++|++.....  ...+...+|+.+++||++++++.+
T Consensus        48 ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~E~~~~~w~~~~el~~~  125 (142)
T cd04700          48 VEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGVLVLRHVWLAEPEGQ--TLAPKFTDEIAEASFFSREDVAQL  125 (142)
T ss_pred             cCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCCcEEEEEEEEEEecCC--ccccCCCCCEEEEEEECHHHhhhc
Confidence            5789999999999999999999975321122322222232  234555543322  233444579999999999999987


Q ss_pred             ch
Q psy13065         80 RK   81 (114)
Q Consensus        80 ~~   81 (114)
                      ..
T Consensus       126 ~~  127 (142)
T cd04700         126 YA  127 (142)
T ss_pred             cc
Confidence            75

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.29  E-value=5.3e-12  Score=85.27  Aligned_cols=78  Identities=18%  Similarity=0.127  Sum_probs=51.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      ++..||+.+||+||++||||+++..+.....+.........+.+|.+....+    .+. .+|+.++.||+++++|.++.
T Consensus        36 ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~E~~~~~W~~~~~l~~~~~  110 (117)
T cd04691          36 IEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSELQLLHYYVVTFWQG----EIP-AQEAAEVHWMTANDIVLASE  110 (117)
T ss_pred             ecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCCeEEEEEEEEEEecC----CCC-cccccccEEcCHHHcchhhh
Confidence            5788999999999999999999754221111211111233455566554322    222 37999999999999998776


Q ss_pred             hhh
Q psy13065         82 EIK   84 (114)
Q Consensus        82 ~~~   84 (114)
                      ..+
T Consensus       111 ~~~  113 (117)
T cd04691         111 ADR  113 (117)
T ss_pred             hHH
Confidence            443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.25  E-value=1.9e-11  Score=81.98  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=49.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceee--eeeecceeeeecc-CCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSS--HLIAEDSYLETTY-NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~--~li~~~~y~~~~~-~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++.  .+.....+..... ..+.+.+|+.+....+ .......+|+.+++|+++++||.
T Consensus        35 ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~e~~~~~W~~~~~l~~  113 (120)
T cd04683          35 LEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGLFFTVRRWSG-EPRNCEPDKCAELRWFPLDALPD  113 (120)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEEEEEEEEeecC-ccccCCCCcEeeEEEEchHHCcc
Confidence            467899999999999999999987  3321112222111 1344444444432211 11122346899999999999997


Q ss_pred             Cchh
Q psy13065         79 SRKE   82 (114)
Q Consensus        79 ~~~~   82 (114)
                      ...+
T Consensus       114 ~~~~  117 (120)
T cd04683         114 DTVD  117 (120)
T ss_pred             hhcc
Confidence            6643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.24  E-value=3.2e-11  Score=81.92  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeeccCCeEEEEEEEeccCCCC-ccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETTYNDQLTRLYLIPGVPIDF-KFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~~~~~~~~lfv~~~~~~~~-~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      .+..||+.+||+||++||||+++..+  +............+.+.+|+.+...... .......+|+.+++|+++++|+.
T Consensus        37 ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~  116 (129)
T cd04678          37 LEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPS  116 (129)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCC
Confidence            46789999999999999999998752  2211111112233445555544443221 11111346889999999999998


Q ss_pred             Cchh
Q psy13065         79 SRKE   82 (114)
Q Consensus        79 ~~~~   82 (114)
                      +...
T Consensus       117 ~~~~  120 (129)
T cd04678         117 VDPL  120 (129)
T ss_pred             cchh
Confidence            7443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.24  E-value=2.8e-11  Score=82.84  Aligned_cols=75  Identities=23%  Similarity=0.224  Sum_probs=47.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++..  ++..    ..........+|.+...++.....+.+.+|+.+++||+++++|..
T Consensus        35 ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~----~~~~~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~  110 (123)
T cd04671          35 MEPGETIEEAVKREVKEETGLDCEPTTLLSV----EEQGGSWFRFVFTGNITGGDLKTEKEADSESLQARWYSNKDLPLP  110 (123)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCeeecceEEEE----EccCCeEEEEEEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCc
Confidence            4778999999999999999999975  2221    111122233445444333322222234568899999999999644


Q ss_pred             c
Q psy13065         80 R   80 (114)
Q Consensus        80 ~   80 (114)
                      .
T Consensus       111 ~  111 (123)
T cd04671         111 L  111 (123)
T ss_pred             c
Confidence            3

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.22  E-value=4e-11  Score=84.24  Aligned_cols=86  Identities=14%  Similarity=0.085  Sum_probs=53.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeee--ccCCeEEEEEEEeccCCC-CccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET--TYNDQLTRLYLIPGVPID-FKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~--~~~~~~~~lfv~~~~~~~-~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      ++..||+.+||+||++||||+++..  ++....+...  ....+.+.+|+.+..... ........+|+.+++||++++|
T Consensus        43 ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~L  122 (144)
T PLN02325         43 LEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNL  122 (144)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHC
Confidence            4778999999999999999999875  3432222111  112344444444332211 1111223456789999999999


Q ss_pred             CCCchhhhhhh
Q psy13065         77 PSSRKEIKTVL   87 (114)
Q Consensus        77 p~~~~~~~~~~   87 (114)
                      |.......+..
T Consensus       123 p~~~~~p~~~~  133 (144)
T PLN02325        123 PEPLFWPLEKL  133 (144)
T ss_pred             ChhhhHHHHHH
Confidence            98666555544

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.22  E-value=4.1e-11  Score=82.02  Aligned_cols=75  Identities=20%  Similarity=0.235  Sum_probs=46.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  +++...+........ ...+|++....+    .+...+|..+++|+++++++.
T Consensus        35 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~~e~~~~~W~~~~el~~  110 (137)
T cd03427          35 VEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFVFLATEFEG----EPLKESEEGILDWFDIDDLPL  110 (137)
T ss_pred             CCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEEEEEEECCccc----ccCCCCccccceEEcHhhccc
Confidence            4678999999999999999999985  232222221111122 234444433322    222345668999999999986


Q ss_pred             Cc
Q psy13065         79 SR   80 (114)
Q Consensus        79 ~~   80 (114)
                      +.
T Consensus       111 ~~  112 (137)
T cd03427         111 LP  112 (137)
T ss_pred             cc
Confidence            53

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.21  E-value=5.8e-11  Score=79.78  Aligned_cols=77  Identities=16%  Similarity=0.158  Sum_probs=47.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCC----eE-EEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYND----QL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~----~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      .+..||+.+||+||++||||+++..  +++...+.......    +. ..+|.+........ .....+|+.++.|++++
T Consensus        34 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~e~~~~~W~~~~  112 (128)
T cd04684          34 IEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHHLCVFYDARVVGGALP-VQEPGEDSHGAAWLPLD  112 (128)
T ss_pred             cCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeeccEEEEEEEEEEecCccc-cCCCCCCceeeEEECHH
Confidence            4678999999999999999999875  33332222221111    22 34444433222110 12235688999999999


Q ss_pred             CCCCC
Q psy13065         75 DLPSS   79 (114)
Q Consensus        75 ~lp~~   79 (114)
                      +++..
T Consensus       113 ~l~~~  117 (128)
T cd04684         113 EAIER  117 (128)
T ss_pred             Hhhcc
Confidence            99844

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.19  E-value=3.8e-11  Score=82.93  Aligned_cols=84  Identities=8%  Similarity=-0.034  Sum_probs=54.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee-eee--c-ceeeeeccC--------CeEEEEEEEeccCCCCccCcCCcCcccceE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH-LIA--E-DSYLETTYN--------DQLTRLYLIPGVPIDFKFAPQTRGEIKACQ   69 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~-li~--~-~~y~~~~~~--------~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~   69 (114)
                      ++..||+.+||+||++||||+++.. +++  + ..+...+.+        +..+.+|.+....+    .+...+|+.+++
T Consensus        35 ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g----~~~~~~e~~~~~  110 (132)
T cd04661          35 REEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSG----QFELSQNQVDFK  110 (132)
T ss_pred             ccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecC----ccccCCCcceeE
Confidence            5789999999999999999998775 332  1 122222211        12344454544433    223347899999


Q ss_pred             EEeCCCCCCCchhhhhhhcc
Q psy13065         70 WFPIGDLPSSRKEIKTVLIN   89 (114)
Q Consensus        70 Wf~id~lp~~~~~~~~~~~~   89 (114)
                      |+++++|+.+....-=+.++
T Consensus       111 W~~~~el~~~l~~~~~~~~~  130 (132)
T cd04661         111 WLAKEELQKYLNPPYLQSVK  130 (132)
T ss_pred             ecCHHHHHhhcCHHHHHHHh
Confidence            99999999876544444443

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.19  E-value=7e-11  Score=79.97  Aligned_cols=78  Identities=14%  Similarity=0.164  Sum_probs=47.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccC--CeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYN--DQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~--~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      .+..||+.+||+||++||||+++..  ++....+......  .+. ..+|.+..............+|+.+++|++++++
T Consensus        32 ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el  111 (125)
T cd04689          32 VEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESSWLASDGPPQADEDHLSFSWVPVSDL  111 (125)
T ss_pred             CCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcccccccCCccCccceEEEEEccHHHc
Confidence            3678999999999999999999875  3332222211111  222 3444444322211122334568999999999997


Q ss_pred             CCC
Q psy13065         77 PSS   79 (114)
Q Consensus        77 p~~   79 (114)
                      +..
T Consensus       112 ~~~  114 (125)
T cd04689         112 SLY  114 (125)
T ss_pred             ccC
Confidence            643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.18  E-value=5e-11  Score=80.69  Aligned_cols=83  Identities=22%  Similarity=0.210  Sum_probs=51.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeee-ec--cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLE-TT--YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~-~~--~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      .+..||+.+||+||++||||+++..  +++...... ..  ...+.+.+++.+.....   .++..+|+.+++||+++++
T Consensus        33 ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~E~~~~~W~~~~el  109 (123)
T cd04672          33 ADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQVYKLFFLCEILGG---EFKPNIETSEVGFFALDDL  109 (123)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceEEEEEEEEEEecCC---cccCCCceeeeEEECHHHC
Confidence            3567999999999999999999853  332111111 11  11123333444443221   2233479999999999999


Q ss_pred             CCCchhhhhhh
Q psy13065         77 PSSRKEIKTVL   87 (114)
Q Consensus        77 p~~~~~~~~~~   87 (114)
                      +.+.....+-+
T Consensus       110 ~~l~~~~~~~~  120 (123)
T cd04672         110 PPLSEKRNTEE  120 (123)
T ss_pred             cccccCCcchh
Confidence            99887655544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.18  E-value=1.4e-11  Score=87.40  Aligned_cols=78  Identities=10%  Similarity=0.054  Sum_probs=49.4

Q ss_pred             cccC-CCHHHHHHHHhhhhhCceeeee--eecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEI-MMNIISEAKQVLEETGFDSSHL--IAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~-es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++.. ||+.+||+||++||||+++..+  +........ ..+..+.+|++.... .....+ ..+|+.++.|+++++++.
T Consensus        41 ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~v~~~~~~~~~-~~~~~~-~~~E~~~~~W~~~~el~~  117 (157)
T cd03426          41 VDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYT-RSGFVVTPVVGLVPP-PLPLVL-NPDEVAEVFEVPLSFLLD  117 (157)
T ss_pred             cCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccc-cCCCEEEEEEEEECC-CCCCCC-CHHHhheeEEEcHHHHhC
Confidence            4667 9999999999999999998853  221111111 123344555543222 112222 235999999999999998


Q ss_pred             Cchh
Q psy13065         79 SRKE   82 (114)
Q Consensus        79 ~~~~   82 (114)
                      ....
T Consensus       118 ~~~~  121 (157)
T cd03426         118 PANP  121 (157)
T ss_pred             cCCc
Confidence            7643

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.17  E-value=4.1e-11  Score=80.82  Aligned_cols=78  Identities=18%  Similarity=0.288  Sum_probs=50.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeec---cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETT---YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~---~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      .+..||+.+||.||++||||+++...  +....|....   .....+.+|.+......  ..+...+|+.+++|++++++
T Consensus        36 v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~W~~~~el  113 (131)
T cd03673          36 LEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKTVHWWLMRALGGE--FTPQPDEEVDEVRWLPPDEA  113 (131)
T ss_pred             cCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcceEEEEEEEEEcCCC--cccCCCCcEEEEEEcCHHHH
Confidence            46789999999999999999998852  3322332221   12234555555433222  22224679999999999999


Q ss_pred             CCCch
Q psy13065         77 PSSRK   81 (114)
Q Consensus        77 p~~~~   81 (114)
                      +....
T Consensus       114 ~~~~~  118 (131)
T cd03673         114 RDRLS  118 (131)
T ss_pred             HHHcC
Confidence            86544

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.17  E-value=4.8e-11  Score=79.68  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=47.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeecc----CCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTY----NDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~----~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      .+..||+.+||+||++||||+++..  ++....+.....    ..+. ...|.+.....    .....+|+.+++|++++
T Consensus        34 ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~E~~~~~w~~~~  109 (122)
T cd04673          34 VELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLGG----EPVAGDDALDARWVPLD  109 (122)
T ss_pred             cCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEEEEEEEEEEeCCC----cccCCcccceeEEECHH
Confidence            3678999999999999999999874  333222222111    1122 22333432221    22345799999999999


Q ss_pred             CCCCCch
Q psy13065         75 DLPSSRK   81 (114)
Q Consensus        75 ~lp~~~~   81 (114)
                      +++.+..
T Consensus       110 el~~~~~  116 (122)
T cd04673         110 ELAALSL  116 (122)
T ss_pred             HHhhCcC
Confidence            9987653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.17  E-value=6.6e-11  Score=80.36  Aligned_cols=74  Identities=14%  Similarity=0.194  Sum_probs=47.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--ee--cceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IA--EDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~--~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      ++..||+.+||.||++||||+++..+  +.  ...+.......+...+|+.+.+....  .....+|+.+++|+++++|+
T Consensus        36 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~  113 (130)
T cd04681          36 VDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTLDLFFVCQVDDKP--IVKAPDDVAELKWVVPQDIE  113 (130)
T ss_pred             ecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEEEEEEEEEeCCCC--CcCChHHhheeEEecHHHCC
Confidence            46789999999999999999998752  22  12222111112334445555444321  12235799999999999996

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.16  E-value=8.2e-11  Score=80.04  Aligned_cols=80  Identities=13%  Similarity=0.090  Sum_probs=48.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeee------ccCCeEEEEEEEeccCCCCc--cCcCCcCcccceEEE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET------TYNDQLTRLYLIPGVPIDFK--FAPQTRGEIKACQWF   71 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~------~~~~~~~~lfv~~~~~~~~~--~~p~~~~EI~~i~Wf   71 (114)
                      ++..||+.+||+||++||||+.+..  +.....|...      ....+.+.+|+.+....+..  .......+..+++|+
T Consensus        34 ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~  113 (128)
T cd04687          34 QEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWL  113 (128)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEE
Confidence            4678999999999999999999874  3222222211      11234444444444332211  111233456799999


Q ss_pred             eCCCCCCCch
Q psy13065         72 PIGDLPSSRK   81 (114)
Q Consensus        72 ~id~lp~~~~   81 (114)
                      ++++|+.+..
T Consensus       114 ~~~~l~~~~~  123 (128)
T cd04687         114 KLKELGDIPL  123 (128)
T ss_pred             cHHHhCcccc
Confidence            9999987764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.15  E-value=5.6e-11  Score=80.65  Aligned_cols=79  Identities=22%  Similarity=0.257  Sum_probs=46.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCC-CCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPI-DFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~-~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      .+..||+.+||+||++||||+++........+...........+|+.+.+.. ..... ...+|+.+++|+++++++...
T Consensus        36 ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~w~~~~el~~~~  114 (127)
T cd04670          36 VDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLYFICRLKPLSFDIN-FDTSEIAAAKWMPLEEYISQP  114 (127)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCceeEEEEEEEccCcCcCC-CChhhhheeEEEcHHHHhcch
Confidence            4678999999999999999999874211111111111112223333333321 11111 235689999999999997655


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       115 ~  115 (127)
T cd04670         115 I  115 (127)
T ss_pred             h
Confidence            4

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.15  E-value=7.1e-11  Score=82.61  Aligned_cols=81  Identities=23%  Similarity=0.379  Sum_probs=50.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeec--c--eeeee------c----cCCeEEEEEEEeccC--CCCccCcCCcC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE--D--SYLET------T----YNDQLTRLYLIPGVP--IDFKFAPQTRG   63 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~--~--~y~~~------~----~~~~~~~lfv~~~~~--~~~~~~p~~~~   63 (114)
                      ++..|++.+||+||++||||+++..  ++..  .  .|...      .    ..++..++|++....  ......+.+.+
T Consensus        36 ~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~  115 (147)
T cd03671          36 IDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHP  115 (147)
T ss_pred             CCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCC
Confidence            5678999999999999999999864  3321  1  12111      0    113344555543332  12222221357


Q ss_pred             cccceEEEeCCCCCCCchh
Q psy13065         64 EIKACQWFPIGDLPSSRKE   82 (114)
Q Consensus        64 EI~~i~Wf~id~lp~~~~~   82 (114)
                      |+.+++|+++++++.....
T Consensus       116 E~~~~~W~~~~el~~~~~~  134 (147)
T cd03671         116 EFDEWRWVPLEELPDLIVP  134 (147)
T ss_pred             CEeeEEeCCHHHHHHhchh
Confidence            9999999999999976653

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.14  E-value=1.5e-10  Score=78.43  Aligned_cols=78  Identities=18%  Similarity=0.183  Sum_probs=48.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeecc--CCeE-EEEEEEeccCCCCccC-----cCCcCcccceEEE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTY--NDQL-TRLYLIPGVPIDFKFA-----PQTRGEIKACQWF   71 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~--~~~~-~~lfv~~~~~~~~~~~-----p~~~~EI~~i~Wf   71 (114)
                      .+..||+.+||+||++||||+++..  ++..........  ..+. ..+|.+.. .++....     ..+.+|+.++.|+
T Consensus        32 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~e~~~~~W~  110 (126)
T cd04688          32 IEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTL-LDESLYQQDIEILEEEGEKIVFRWI  110 (126)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEe-CCCcccccccceeccCCCEEEEEEe
Confidence            4678999999999999999999875  332211111111  1233 34444443 3222111     1245789999999


Q ss_pred             eCCCCCCCc
Q psy13065         72 PIGDLPSSR   80 (114)
Q Consensus        72 ~id~lp~~~   80 (114)
                      +++++..+.
T Consensus       111 ~~~~l~~~~  119 (126)
T cd04688         111 PIDELKEIK  119 (126)
T ss_pred             eHHHcccCc
Confidence            999998553

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.14  E-value=5.8e-11  Score=80.28  Aligned_cols=76  Identities=13%  Similarity=0.103  Sum_probs=49.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++..  +.....|... ......++|++......  ......+|+.+++|++++++...
T Consensus        38 ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~~  114 (122)
T cd04682          38 REGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA-SPPGTEHVFVVPLTARE--DAILFGDEGQALRLMTVEEFLAH  114 (122)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC-CCCceEEEEEEEEecCC--CccccCchhheeecccHHHHhhc
Confidence            5778999999999999999999863  2111122211 12334555666544322  12234689999999999998655


Q ss_pred             c
Q psy13065         80 R   80 (114)
Q Consensus        80 ~   80 (114)
                      .
T Consensus       115 ~  115 (122)
T cd04682         115 E  115 (122)
T ss_pred             c
Confidence            4

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.14  E-value=1.7e-10  Score=78.33  Aligned_cols=74  Identities=16%  Similarity=0.205  Sum_probs=46.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccC-c-----CCcCcccceEEEeC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFA-P-----QTRGEIKACQWFPI   73 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~-p-----~~~~EI~~i~Wf~i   73 (114)
                      .+..||+.+||+||++||||+++..  ++..    ..+ .+...++|.+....+..... +     ...++..++.|+++
T Consensus        34 ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~----~~~-~~~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~  108 (121)
T cd04669          34 IEEGETPEEAAKREALEELGLDVRVEEIFLI----VNQ-NGRTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDL  108 (121)
T ss_pred             ccCCCCHHHHHHHHHHHhhCeeEeeeeEEEE----Eee-CCcEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEH
Confidence            4678999999999999999999964  2221    111 23334556555443221110 0     01235667999999


Q ss_pred             CCCCCCc
Q psy13065         74 GDLPSSR   80 (114)
Q Consensus        74 d~lp~~~   80 (114)
                      ++||.+.
T Consensus       109 ~el~~l~  115 (121)
T cd04669         109 DQLETIP  115 (121)
T ss_pred             HHcccCC
Confidence            9999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.13  E-value=1.3e-10  Score=77.40  Aligned_cols=79  Identities=19%  Similarity=0.322  Sum_probs=50.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      ++..||+.+||.||++||||+++..+.....+   ........+|.+. +....  ..+..+|+.+++|+++++++.+..
T Consensus        30 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~---~~~~~~~~~f~~~-~~~~~--~~~~~~e~~~~~W~~~~el~~~~~  103 (112)
T cd04667          30 IEPGETPLQAARRELQEETGLQGLDLLYLFHV---DGGSTRHHVFVAS-VPPSA--QPKPSNEIADCRWLSLDALGDLNA  103 (112)
T ss_pred             CCCCCCHHHHHHHHHHHHhCCcccceEEEEEE---eCCCEEEEEEEEE-cCCcC--CCCCchheeEEEEecHHHhhhccc
Confidence            46789999999999999999998653211111   1122333444443 32221  223457999999999999998766


Q ss_pred             hhhhh
Q psy13065         82 EIKTV   86 (114)
Q Consensus        82 ~~~~~   86 (114)
                      ....+
T Consensus       104 ~~~~~  108 (112)
T cd04667         104 SAATR  108 (112)
T ss_pred             chhhh
Confidence            54433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.13  E-value=5.7e-11  Score=80.52  Aligned_cols=75  Identities=11%  Similarity=0.038  Sum_probs=46.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeee-cc--CCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET-TY--NDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD   75 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~-~~--~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~   75 (114)
                      ++..||+.+||+||++||||+++..  ++....+... ..  ..+. ...|.+.. .+ .  .....+|+.+++||++++
T Consensus        35 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~~~~~~e~~~~~W~~~~e  110 (125)
T cd04696          35 VEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHFVLFDFFART-DG-T--EVTPNEEIVEWEWVTPEE  110 (125)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEEEEEEEEEEe-cC-C--cccCCcccceeEEECHHH
Confidence            4668999999999999999999874  3322222211 11  1222 22233332 21 1  223457999999999999


Q ss_pred             CCCCc
Q psy13065         76 LPSSR   80 (114)
Q Consensus        76 lp~~~   80 (114)
                      ++.+.
T Consensus       111 l~~~~  115 (125)
T cd04696         111 ALDYP  115 (125)
T ss_pred             HhcCC
Confidence            87764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.13  E-value=1.2e-10  Score=81.73  Aligned_cols=77  Identities=9%  Similarity=0.065  Sum_probs=48.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee----eeecceeeee------ccCCeEEEEEEEeccCCCCccCcCCcCcccceEEE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH----LIAEDSYLET------TYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWF   71 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~----li~~~~y~~~------~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf   71 (114)
                      ++..||+.+||+||++||||+++..    ++....+...      ....+.+.+++.+....+..  ....+|+.+++||
T Consensus        47 ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~~~W~  124 (144)
T cd03430          47 IRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNEL--LLPDEQHSEYQWL  124 (144)
T ss_pred             ecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccccCCCccEEEEEEEEEEEcCCcc--cCCchhccEeEEe
Confidence            5778999999999999999999873    3332211111      11123333333333322211  2345799999999


Q ss_pred             eCCCCCCCc
Q psy13065         72 PIGDLPSSR   80 (114)
Q Consensus        72 ~id~lp~~~   80 (114)
                      ++++++...
T Consensus       125 ~~~el~~~~  133 (144)
T cd03430         125 TSDELLADD  133 (144)
T ss_pred             cHHHHhcCC
Confidence            999998653

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.12  E-value=1.3e-10  Score=79.36  Aligned_cols=78  Identities=13%  Similarity=0.186  Sum_probs=49.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||.||++||||+++..  ++....+......... ..+|++. +.... ......+|+.++.|+++++++.
T Consensus        33 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~-~~~~~~~e~~~~~w~~~~el~~  110 (134)
T cd03675          33 LEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAFAAE-LLEHL-PDQPLDSGIVRAHWLTLEEILA  110 (134)
T ss_pred             CCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEEEEE-ECCCC-CCCCCCCCceeeEEEeHHHHHh
Confidence            4678999999999999999999975  3332222211111222 2334443 22221 1222346899999999999998


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       111 ~~~  113 (134)
T cd03675         111 LAA  113 (134)
T ss_pred             hhh
Confidence            874

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.11  E-value=5.3e-11  Score=81.59  Aligned_cols=79  Identities=15%  Similarity=0.173  Sum_probs=50.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++||||+++..+.....+.. .......+.+|++......... ....+|+.+++|++++++..+.
T Consensus        38 ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~~~  116 (137)
T cd03424          38 IDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERIHLFLAEDLSPGEEG-LLDEGEDIEVVLVPLDEALELL  116 (137)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccEEEEEEEcccccccC-CCCCCCeeEEEEecHHHHHHHH
Confidence            4678999999999999999999974322222221 1112234555655433222111 2235689999999999998766


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       117 ~  117 (137)
T cd03424         117 A  117 (137)
T ss_pred             H
Confidence            5

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.10  E-value=2.7e-10  Score=78.89  Aligned_cols=76  Identities=21%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeec-----ceeeee--cc-----CCeE-EEEEEEeccCCCCccCcCCcCcccce
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAE-----DSYLET--TY-----NDQL-TRLYLIPGVPIDFKFAPQTRGEIKAC   68 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~-----~~y~~~--~~-----~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i   68 (114)
                      ++..||+.+||+||++||||+++..+...     ..+...  ..     ...+ ...|++....+.  ..+...+|+.++
T Consensus        35 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~--~~~~~~~E~~~~  112 (138)
T cd03674          35 IDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADD--VAPPKSDESDAV  112 (138)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCCCCCcEEEEEEEEEEccCcc--ccCCCCCccccc
Confidence            56789999999999999999987642111     111111  11     1222 233555432222  122245799999


Q ss_pred             EEEeCCCCCCC
Q psy13065         69 QWFPIGDLPSS   79 (114)
Q Consensus        69 ~Wf~id~lp~~   79 (114)
                      +|+++++++.+
T Consensus       113 ~W~~~~el~~~  123 (138)
T cd03674         113 RWFPLDELASL  123 (138)
T ss_pred             EEEcHHHhhhc
Confidence            99999999544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.08  E-value=2e-10  Score=82.52  Aligned_cols=77  Identities=8%  Similarity=0.074  Sum_probs=47.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee----eeeccee-eeecc-----CCeEEE-EEEEeccCCCCccCcCCcCcccceEE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH----LIAEDSY-LETTY-----NDQLTR-LYLIPGVPIDFKFAPQTRGEIKACQW   70 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~----li~~~~y-~~~~~-----~~~~~~-lfv~~~~~~~~~~~p~~~~EI~~i~W   70 (114)
                      ++..||+.+||+||++||||+++..    +++...+ ...+.     ..+.+. +|.+. ...+. . ....+|+.+++|
T Consensus        52 VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~-~~~g~-~-~~~~~E~~~~~W  128 (159)
T PRK15434         52 VQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRLR-VAEED-L-LLPDEQHDDYRW  128 (159)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCCCccceEEEEEEEEEE-ecCCc-c-cCChHHeeEEEE
Confidence            5788999999999999999999742    3332111 11111     113333 33343 32221 1 223468999999


Q ss_pred             EeCCCCCCCch
Q psy13065         71 FPIGDLPSSRK   81 (114)
Q Consensus        71 f~id~lp~~~~   81 (114)
                      +++++++....
T Consensus       129 ~~~~el~~~~~  139 (159)
T PRK15434        129 LTPDALLASDN  139 (159)
T ss_pred             EeHHHhhhccc
Confidence            99999987543

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.08  E-value=4.8e-10  Score=76.00  Aligned_cols=79  Identities=20%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeec---ceeeeeccCC---eEEEEEEEeccCCCCccCcCCcCcccceEEEeC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE---DSYLETTYND---QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI   73 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~---~~y~~~~~~~---~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~i   73 (114)
                      .+..||+.+||+||++||||+++..  ++..   ..+.....++   ....+|+++..... .. ....+|+.+++||++
T Consensus        39 v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~e~~~~~W~~~  116 (132)
T cd04677          39 MELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGG-KL-VPDGDETLELKFFSL  116 (132)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCCcEEEEEEEEEEEeccCC-cc-cCCCCceeeEEEECh
Confidence            3678999999999999999999985  2211   1111111122   23444554433221 11 224579999999999


Q ss_pred             CCCCCCchh
Q psy13065         74 GDLPSSRKE   82 (114)
Q Consensus        74 d~lp~~~~~   82 (114)
                      ++++.+...
T Consensus       117 ~e~~~~~~~  125 (132)
T cd04677         117 DELPELINP  125 (132)
T ss_pred             hHCccchhH
Confidence            999987654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.08  E-value=2.7e-10  Score=76.03  Aligned_cols=72  Identities=17%  Similarity=0.224  Sum_probs=46.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeee---ccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET---TYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD   75 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~---~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~   75 (114)
                      ++..||+.+||+||++||||+++..  +.....+...   ..+. ....+|.+. ...    .+...+|+.+++|+++++
T Consensus        32 ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~----~~~~~~e~~~~~W~~~~e  106 (118)
T cd04690          32 IEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAE-LTG----EPVPAAEIEEIRWVDYDD  106 (118)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEc-ccC----CcCCCchhhccEEecHHH
Confidence            4678999999999999999998875  4322222211   1111 234445443 222    233457999999999999


Q ss_pred             CCC
Q psy13065         76 LPS   78 (114)
Q Consensus        76 lp~   78 (114)
                      ++.
T Consensus       107 ~~~  109 (118)
T cd04690         107 PAD  109 (118)
T ss_pred             ccc
Confidence            743

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.08  E-value=1.3e-10  Score=80.98  Aligned_cols=79  Identities=15%  Similarity=0.191  Sum_probs=49.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeec------cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETT------YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI   73 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~------~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~i   73 (114)
                      ++..||+.+||+||++||||+++..  +.....+....      .......+|++..........+ ..+|+.+++|+++
T Consensus        43 ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~E~~~~~W~~~  121 (144)
T cd04692          43 ILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTL-QKEEVAGVVLIPL  121 (144)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccccCCCccceEEEEEEEeccCChhhcCC-ChhHhheEEEECH
Confidence            4678999999999999999998752  32111221111      1123345566654321111222 3479999999999


Q ss_pred             CCCCCCch
Q psy13065         74 GDLPSSRK   81 (114)
Q Consensus        74 d~lp~~~~   81 (114)
                      +++..+..
T Consensus       122 ~el~~~~~  129 (144)
T cd04692         122 DEFAELLE  129 (144)
T ss_pred             HHHHHHHH
Confidence            99976664

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.07  E-value=1e-10  Score=79.44  Aligned_cols=76  Identities=14%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      .+..||+ +||+||++||||+++..  +.....|...........+|..+ .... ...+ ..+|+.+++|+++++++.+
T Consensus        38 ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~E~~~~~w~~~~el~~~  113 (127)
T cd04693          38 VQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDDYYLFYAD-VEIG-KLIL-QKEEVDEVKFVSKDEIDGL  113 (127)
T ss_pred             CCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCCeEEEEEEEec-Cccc-cccc-CHHHhhhEEEeCHHHHHHH
Confidence            4678999 99999999999999863  32222332221111222333332 2111 1112 3469999999999999877


Q ss_pred             ch
Q psy13065         80 RK   81 (114)
Q Consensus        80 ~~   81 (114)
                      ..
T Consensus       114 ~~  115 (127)
T cd04693         114 IG  115 (127)
T ss_pred             Hh
Confidence            64

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.06  E-value=3.6e-10  Score=86.71  Aligned_cols=77  Identities=21%  Similarity=0.164  Sum_probs=51.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      ++..||+++||+|||+||||+++..+.....+... .....+..|.+....+.  ..+ ..+|+.+++||+++++|.+..
T Consensus       165 vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~~~-~p~~lm~~f~a~~~~~~--~~~-~~~Ei~~a~W~~~del~~lp~  240 (256)
T PRK00241        165 VEVGETLEQCVAREVMEESGIKVKNLRYVGSQPWP-FPHSLMLGFHADYDSGE--IVF-DPKEIADAQWFRYDELPLLPP  240 (256)
T ss_pred             CCCCCCHHHHhhhhhhhccCceeeeeEEEEeEeec-CCCeEEEEEEEEecCCc--ccC-CcccEEEEEEECHHHCcccCC
Confidence            46789999999999999999999863211111111 12344555666543222  222 346999999999999998765


Q ss_pred             h
Q psy13065         82 E   82 (114)
Q Consensus        82 ~   82 (114)
                      +
T Consensus       241 ~  241 (256)
T PRK00241        241 S  241 (256)
T ss_pred             c
Confidence            4

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.06  E-value=2.9e-10  Score=80.39  Aligned_cols=78  Identities=17%  Similarity=0.188  Sum_probs=50.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEE-EEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLT-RLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~-~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      +|..||+.+||.||++|||||++..  ++...+...+...++++ .+|+++...+.  ..+.+.++..+++||++++||.
T Consensus        44 ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~r~~~v~~~~~~~~~~g~--~~~~~~~d~~~~~~~~~~~l~~  121 (145)
T COG1051          44 VEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDPRGHHVSFLFFAAEPEGE--LLAGDGDDAAEVGWFPLDELPE  121 (145)
T ss_pred             CCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCCceeEEEEEEEEEecCCC--cccCChhhHhhcceecHhHccc
Confidence            5778999999999999999999864  33222222222334443 33444433222  2333345889999999999997


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       122 ~~~  124 (145)
T COG1051         122 LPL  124 (145)
T ss_pred             ccc
Confidence            543

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.05  E-value=1.9e-10  Score=83.67  Aligned_cols=75  Identities=13%  Similarity=0.157  Sum_probs=47.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      .+..||+.+||+||++|||||++..+.....|......... ..+|.+. ..+.  ..+ ..+|+.+++|+++++++.+.
T Consensus        75 ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~--~~~-~~~E~~~~~W~~~~el~~~~  150 (180)
T PRK15393         75 VQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRVWGALFSCV-SHGP--FAL-QEEEVSEVCWMTPEEITARC  150 (180)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceEEEEEEEEE-eCCC--CCC-ChHHeeEEEECCHHHHhhhh
Confidence            47789999999999999999987653222233322222222 2334332 2221  122 34799999999999999764

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.04  E-value=2.1e-10  Score=78.22  Aligned_cols=76  Identities=12%  Similarity=0.195  Sum_probs=49.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      .+..||+.+||+||++||||+++..+.....|....... ....+|.+.. ...  ..+ ..+|+.+++|+++++++.+.
T Consensus        38 ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~~f~~~~-~~~--~~~-~~~E~~~~~w~~~~el~~~~  113 (126)
T cd04697          38 VQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWGKVFSCVY-DGP--LKL-QEEEVEEITWLSINEILQFK  113 (126)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEEEEEEEEE-CCC--CCC-CHhHhhheEEcCHHHHHHHh
Confidence            466899999999999999999998644333343322222 2234455432 222  222 34799999999999998754


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       114 ~  114 (126)
T cd04697         114 E  114 (126)
T ss_pred             h
Confidence            3

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.03  E-value=3e-10  Score=77.75  Aligned_cols=75  Identities=12%  Similarity=0.120  Sum_probs=45.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee---eecceeeeecc---CCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL---IAEDSYLETTY---NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD   75 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l---i~~~~y~~~~~---~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~   75 (114)
                      ++..||+.+||+||++||||+++...   ++...+.....   ....+.+|.+. .....  ......++.+++|+++++
T Consensus        35 ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~-~~~~~--~~~~~~e~~~~~W~~~~e  111 (122)
T cd04666          35 PEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCEVAVFPLE-VTEEL--DEWPEMHQRKRKWFSPEE  111 (122)
T ss_pred             cCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEEEEEEEEE-Eeccc--cCCcccCceEEEEecHHH
Confidence            57899999999999999999997643   22222221111   12234444443 22211  122345788999999998


Q ss_pred             CCCC
Q psy13065         76 LPSS   79 (114)
Q Consensus        76 lp~~   79 (114)
                      +..+
T Consensus       112 a~~~  115 (122)
T cd04666         112 AALL  115 (122)
T ss_pred             HHHh
Confidence            8544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.03  E-value=5.2e-10  Score=77.42  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=46.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee-eec----ceee-eeccCC---eEEEEEE-EeccCCCCccCcCCcCcccceEEE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL-IAE----DSYL-ETTYND---QLTRLYL-IPGVPIDFKFAPQTRGEIKACQWF   71 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l-i~~----~~y~-~~~~~~---~~~~lfv-~~~~~~~~~~~p~~~~EI~~i~Wf   71 (114)
                      ++..||+.+||+||++|||||++... +..    ..+. ..+..+   +...+|+ +.....+.  .....+|+.+++||
T Consensus        40 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~w~  117 (141)
T PRK15472         40 VEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYLIFDCVSANR--DVKINEEFQDYAWV  117 (141)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEEEEEeecCCC--cccCChhhheEEEc
Confidence            47789999999999999999987531 111    1111 111122   2222222 21111111  22235799999999


Q ss_pred             eCCCCCCCchh
Q psy13065         72 PIGDLPSSRKE   82 (114)
Q Consensus        72 ~id~lp~~~~~   82 (114)
                      ++++|+.+...
T Consensus       118 ~~~el~~l~~~  128 (141)
T PRK15472        118 KPEDLVHYDLN  128 (141)
T ss_pred             cHHHhcccccc
Confidence            99999987643

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.02  E-value=3.2e-10  Score=77.73  Aligned_cols=78  Identities=12%  Similarity=0.100  Sum_probs=49.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeec--ceeeeeccCC--eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAE--DSYLETTYND--QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~--~~y~~~~~~~--~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      ++..||+.+||+||++||||+++..+...  ..+.......  ....+|++...... .  ....+|..+++|+++++++
T Consensus        36 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~--~~~~~E~~~~~W~~~~e~~  112 (131)
T cd04695          36 VEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVPPHQ-E--VVLNHEHTEYRWCSFAEAL  112 (131)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEecCCC-c--cccCchhcccEecCHHHHH
Confidence            47889999999999999999998754211  1111121122  22334554432221 1  1234699999999999998


Q ss_pred             CCchh
Q psy13065         78 SSRKE   82 (114)
Q Consensus        78 ~~~~~   82 (114)
                      .+...
T Consensus       113 ~~~~~  117 (131)
T cd04695         113 ELAPF  117 (131)
T ss_pred             HhcCC
Confidence            76653

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.00  E-value=2.3e-10  Score=76.81  Aligned_cols=80  Identities=20%  Similarity=0.263  Sum_probs=49.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCC--eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYND--QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~--~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      .++.||+.+||+||++||||+++..  +.....+.......  ..+.+|++..........+ ..+|+.++.|++++++.
T Consensus        39 i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~  117 (134)
T PF00293_consen   39 IEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEGEIVIFFIAELPSEQSEIQP-QDEEISEVKWVPPDELL  117 (134)
T ss_dssp             ECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSEEEEEEEEEEEEEEESECHT-TTTTEEEEEEEEHHHHH
T ss_pred             EEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCcccEEEEEEEEEEeCCccccCC-CCccEEEEEEEEHHHhh
Confidence            4678999999999999999999964  22222232222222  3444444432222212222 23499999999999988


Q ss_pred             CCchh
Q psy13065         78 SSRKE   82 (114)
Q Consensus        78 ~~~~~   82 (114)
                      .+...
T Consensus       118 ~~~~~  122 (134)
T PF00293_consen  118 ELLLN  122 (134)
T ss_dssp             HHHHT
T ss_pred             hchhC
Confidence            76553

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.00  E-value=3.6e-10  Score=76.83  Aligned_cols=76  Identities=22%  Similarity=0.292  Sum_probs=47.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeec-ce--eee-eccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE-DS--YLE-TTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~-~~--y~~-~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      ++..||+.+||+||++||||+++..  ++.. ..  +.. ...+.+ ...+|++.. ....  .....+|+.+++|++++
T Consensus        37 ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~--~~~~~~E~~~~~W~~~~  113 (129)
T cd04664          37 IEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGRVWTEHPFAFHL-PSDA--VVTLDWEHDAFEWVPPE  113 (129)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCceEEEEeEEEEEc-CCCC--cccCCccccccEecCHH
Confidence            4678999999999999999999853  3322 11  111 111122 234444443 2221  12345789999999999


Q ss_pred             CCCCCc
Q psy13065         75 DLPSSR   80 (114)
Q Consensus        75 ~lp~~~   80 (114)
                      +++...
T Consensus       114 e~~~~~  119 (129)
T cd04664         114 EAAALL  119 (129)
T ss_pred             HHHHHH
Confidence            987543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.00  E-value=4e-10  Score=76.33  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=49.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeec----ceeeeec-cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAE----DSYLETT-YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~----~~y~~~~-~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      ++..||+.+||+||++||||+++..+...    ..+.... .....+.+|++...+. ...  ...+|+.++.|++++++
T Consensus        36 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~-~~~--~~~~E~~~~~W~~~~e~  112 (130)
T cd03428          36 VEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKLKTVTYFLAELRPD-VEV--KLSEEHQDYRWLPYEEA  112 (130)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccCcceEEEEEEEEeCCC-Ccc--ccccceeeEEeecHHHH
Confidence            46789999999999999999999853211    1111111 1234455566553322 122  22379999999999998


Q ss_pred             CCCch
Q psy13065         77 PSSRK   81 (114)
Q Consensus        77 p~~~~   81 (114)
                      +.+..
T Consensus       113 ~~~~~  117 (130)
T cd03428         113 LKLLT  117 (130)
T ss_pred             HHHcC
Confidence            87654

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=98.99  E-value=5.2e-10  Score=79.54  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=50.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeec--ceeeeec-----------cCCeEEEEEEEeccCCCCccC--cCCcCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE--DSYLETT-----------YNDQLTRLYLIPGVPIDFKFA--PQTRGE   64 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~--~~y~~~~-----------~~~~~~~lfv~~~~~~~~~~~--p~~~~E   64 (114)
                      .+..||+.+||.||++||||+++..  +++.  ..+.+..           ..++..++|++..........  +.+.+|
T Consensus        41 ~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E  120 (156)
T PRK00714         41 IDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPE  120 (156)
T ss_pred             CCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccccCCCCCCCC
Confidence            4678999999999999999999863  3332  1111110           112344566665433222222  223469


Q ss_pred             ccceEEEeCCCCCCCch
Q psy13065         65 IKACQWFPIGDLPSSRK   81 (114)
Q Consensus        65 I~~i~Wf~id~lp~~~~   81 (114)
                      +.+++||++++++....
T Consensus       121 ~~~~~W~~~del~~~~~  137 (156)
T PRK00714        121 FDAWRWVSYWYPLDQVV  137 (156)
T ss_pred             eeeeEeCCHHHHHHhch
Confidence            99999999999987643

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=98.99  E-value=7.4e-10  Score=76.28  Aligned_cols=74  Identities=14%  Similarity=0.107  Sum_probs=46.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++..+.....+.... ......+|++.....  ... ...+|+.+++|++++++...
T Consensus        34 ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~~~-~~~~~~~f~~~~~~~--~~~-~~~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          34 VEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPWPF-PSSLMLGFTAEADSG--EIV-VDDDELEDARWFSRDEVRAA  107 (131)
T ss_pred             ccCCCCHHHHHhhhhhhccCceeeeeEEEeecCCCC-CceEEEEEEEEEcCC--ccc-CCchhhhccEeecHHHHhhc
Confidence            567899999999999999999997532111111111 123344455543321  121 23469999999999885543

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=98.96  E-value=6.4e-10  Score=79.39  Aligned_cols=76  Identities=13%  Similarity=0.227  Sum_probs=48.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--ee-ecceeeeeccCC---e-EEEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LI-AEDSYLETTYND---Q-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li-~~~~y~~~~~~~---~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      ++..||+.+||+||++||||+.+..  ++ ....|.......   + ...+|.+.. ...  ..+ ..+|+.+++|++++
T Consensus        68 ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~-~~~--~~~-~~~Ev~~~~w~~~~  143 (165)
T cd02885          68 PLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDGGLVEHEIDHVFFARA-DVT--LIP-NPDEVSEYRWVSLE  143 (165)
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCCCceeeEEEEEEEEEe-CCC--CCC-CccceeEEEEECHH
Confidence            4678999999999999999999875  32 222222222111   2 233444442 222  223 45799999999999


Q ss_pred             CCCCCch
Q psy13065         75 DLPSSRK   81 (114)
Q Consensus        75 ~lp~~~~   81 (114)
                      +++.+..
T Consensus       144 el~~~~~  150 (165)
T cd02885         144 DLKELVA  150 (165)
T ss_pred             HHHHHHH
Confidence            9987664

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.95  E-value=2.1e-09  Score=72.19  Aligned_cols=76  Identities=14%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeee-cceeeeeccC-CeEE-EEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIA-EDSYLETTYN-DQLT-RLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~-~~~y~~~~~~-~~~~-~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      .+..||+.+||+||++||||+++..... ...+.+.... .+.. .+|.+.....    .....+|+.++.|++++++..
T Consensus        38 ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~~  113 (129)
T cd04699          38 VEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVIYLVFVCEALSG----AVKLSDEHEEYAWVTLEELAI  113 (129)
T ss_pred             ccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEEEEEEEEeeecCC----cccCChhheEEEEecHHHhhh
Confidence            4678999999999999999999875221 1111111111 1222 2233322211    122346889999999999854


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       114 ~~~  116 (129)
T cd04699         114 LKA  116 (129)
T ss_pred             hhc
Confidence            443

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=98.94  E-value=5.5e-10  Score=77.88  Aligned_cols=76  Identities=22%  Similarity=0.233  Sum_probs=47.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCcee--eee--eec---cee------eeeccC---CeEEEEEEEeccCCCCccCcCCcCcc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDS--SHL--IAE---DSY------LETTYN---DQLTRLYLIPGVPIDFKFAPQTRGEI   65 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v--~~l--i~~---~~y------~~~~~~---~~~~~lfv~~~~~~~~~~~p~~~~EI   65 (114)
                      .+..||+.+||+||++||||+++  ..+  ++.   ..|      ...+..   ....++|.+.. ..+.  .+ ..+|+
T Consensus        40 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~--~~-~~~E~  115 (148)
T PRK09438         40 LEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHWRHRYAPGVTRNTEHWFCLAL-PHER--PV-VLTEH  115 (148)
T ss_pred             CCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchhhhhccccccCCceeEEEEEec-CCCC--cc-ccCcc
Confidence            47789999999999999999998  332  210   111      111111   23345565543 2221  22 23599


Q ss_pred             cceEEEeCCCCCCCch
Q psy13065         66 KACQWFPIGDLPSSRK   81 (114)
Q Consensus        66 ~~i~Wf~id~lp~~~~   81 (114)
                      .+++|+++++++.+..
T Consensus       116 ~~~~W~~~~e~~~~~~  131 (148)
T PRK09438        116 LAYQWLDAREAAALTK  131 (148)
T ss_pred             cceeeCCHHHHHHHhc
Confidence            9999999999988653

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.93  E-value=3.4e-09  Score=72.51  Aligned_cols=70  Identities=17%  Similarity=0.085  Sum_probs=45.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      ++..|++.+||+||++||||+++....-...|.  .... ....+|.+....+.    .....|..+++|+++++||
T Consensus        47 ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~----~~~~~e~~~~~~~~~~~l~  117 (130)
T cd04511          47 MENGETTEQGALRETWEEAGARVEIDGLYAVYS--VPHISQVYMFYRARLLDLD----FAPGPESLEVRLFTEEEIP  117 (130)
T ss_pred             ccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEe--cCCceEEEEEEEEEEcCCc----ccCCcchhceEEECHHHCC
Confidence            578899999999999999999986421111111  1222 33444555443221    2234688999999999998

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.92  E-value=3.7e-09  Score=70.61  Aligned_cols=78  Identities=22%  Similarity=0.147  Sum_probs=47.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeec---ceeeeeccCC---eEEEEEEEeccCCCCccCcCCcCcccceEEEeC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE---DSYLETTYND---QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI   73 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~---~~y~~~~~~~---~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~i   73 (114)
                      ++..|++.+||+||++||||+++..  +++.   ..+...+..+   +...+++.+...... .. ...+|..+++|+++
T Consensus        34 v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~e~~~~~w~~~  111 (129)
T cd04676          34 VEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGE-LR-VGDDESLDVAWFDP  111 (129)
T ss_pred             cCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCcEEEEEEEEEEEeeCCe-ec-CCCCceeEEEEECh
Confidence            4678999999999999999998864  2211   1111122222   233333333332221 11 24568899999999


Q ss_pred             CCCCCCch
Q psy13065         74 GDLPSSRK   81 (114)
Q Consensus        74 d~lp~~~~   81 (114)
                      ++++.+.-
T Consensus       112 ~el~~~~~  119 (129)
T cd04676         112 DGLPPLLM  119 (129)
T ss_pred             hhCccccC
Confidence            99998643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=98.87  E-value=2e-09  Score=78.32  Aligned_cols=78  Identities=14%  Similarity=0.145  Sum_probs=51.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      +|..||+.+||+||++||||+++..+.....+.. .......+++|++..+....  ......|..++.|+++++++.+.
T Consensus        83 ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~~f~a~~~~~~~--~~~~e~E~i~~~~~~~~e~~~~~  160 (185)
T PRK11762         83 IDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMNIVLAEDLYPER--LEGDEPEPLEVVRWPLADLDELL  160 (185)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEEEEEEEcccccc--CCCCCCceeEEEEEcHHHHHHHH
Confidence            4678999999999999999999986432222221 12234567778877654321  11234566788999999887665


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       161 ~  161 (185)
T PRK11762        161 A  161 (185)
T ss_pred             H
Confidence            4

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=98.83  E-value=4.6e-09  Score=76.39  Aligned_cols=76  Identities=17%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeee---ecceeeeeccCC----eEEEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLI---AEDSYLETTYND----QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li---~~~~y~~~~~~~----~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      ++..||+.+||+||++||||+++..+.   ....|......+    ....+|++... +  ...+ ..+|+.+++|++++
T Consensus        72 ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~-~--~~~~-~~~Ev~~~~W~~~~  147 (184)
T PRK03759         72 PQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGIVENEVCPVFAARVT-S--ALQP-NPDEVMDYQWVDPA  147 (184)
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCceeeEEEEEEEEEEC-C--CCCC-ChhHeeeEEEECHH
Confidence            467899999999999999999997432   111222211122    22345555432 2  1222 34799999999999


Q ss_pred             CCCCCch
Q psy13065         75 DLPSSRK   81 (114)
Q Consensus        75 ~lp~~~~   81 (114)
                      ++.....
T Consensus       148 el~~~i~  154 (184)
T PRK03759        148 DLLRAVD  154 (184)
T ss_pred             HHHHHHH
Confidence            9987665

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.81  E-value=6.3e-09  Score=71.53  Aligned_cols=78  Identities=17%  Similarity=0.118  Sum_probs=43.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee---eeec-ceee-eeccCC---eEEEEEEEeccCCCCccCcCC-cCcc---cceE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH---LIAE-DSYL-ETTYND---QLTRLYLIPGVPIDFKFAPQT-RGEI---KACQ   69 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~---li~~-~~y~-~~~~~~---~~~~lfv~~~~~~~~~~~p~~-~~EI---~~i~   69 (114)
                      ++..||+.+||+||++||||+.+..   .+.. ..|. ..+.++   +.+.+|+.+.+.... ..+.. ..|+   .++.
T Consensus        31 ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~~~~~~~  109 (131)
T cd04686          31 VEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHMISYYYLCEVDAEL-GAQQLEDYEAELGMKPI  109 (131)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEEEEEEEEEEEcCCc-CCcccchhhHhcCCCcE
Confidence            4678999999999999999998742   2221 1111 111222   233334444433221 11222 2233   3589


Q ss_pred             EEeCCCCCCCc
Q psy13065         70 WFPIGDLPSSR   80 (114)
Q Consensus        70 Wf~id~lp~~~   80 (114)
                      |++++++....
T Consensus       110 W~~~~ea~~~~  120 (131)
T cd04686         110 WINIHEAIEHN  120 (131)
T ss_pred             EecHHHHHHhh
Confidence            99999887544

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.80  E-value=2.2e-08  Score=65.36  Aligned_cols=77  Identities=19%  Similarity=0.204  Sum_probs=47.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeec-cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETT-YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~-~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+.+...  .....+.... .......+|.+.......  .....+|+.+..|+++++++.
T Consensus        34 ~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~w~~~~~l~~  111 (123)
T cd02883          34 VEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFVFLARLVGGEP--TLLPPDEISEVRWVTLDELPA  111 (123)
T ss_pred             ccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEEEEEEeCCCCc--CCCCCCccceEEEEcHHHCcc
Confidence            57889999999999999999988632  1111121111 122334445443222211  112346889999999999987


Q ss_pred             Cc
Q psy13065         79 SR   80 (114)
Q Consensus        79 ~~   80 (114)
                      ..
T Consensus       112 ~~  113 (123)
T cd02883         112 LA  113 (123)
T ss_pred             cc
Confidence            33

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=98.80  E-value=1.2e-08  Score=69.65  Aligned_cols=73  Identities=14%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  ++....+  ...... .+++|.+....+    .+. ..|..+++|+++++++.
T Consensus        39 ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~-~~e~~~~~W~~~~el~~  111 (135)
T PRK10546         39 VEPGESQPQALIRELREELGIEATVGEYVASHQR--EVSGRRIHLHAWHVPDFHG----ELQ-AHEHQALVWCTPEEALR  111 (135)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCccccceeEEEEEE--ecCCcEEEEEEEEEEEecC----ccc-ccccceeEEcCHHHccc
Confidence            4678999999999999999999874  2321111  111222 234444432211    222 34678999999999987


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       112 ~~~  114 (135)
T PRK10546        112 YPL  114 (135)
T ss_pred             CCC
Confidence            643

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=98.80  E-value=2.9e-09  Score=82.66  Aligned_cols=74  Identities=20%  Similarity=0.402  Sum_probs=52.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeec---cCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCC-CC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETT---YNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD-LP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~---~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~-lp   77 (114)
                      +|--||+++|++|||+||+|++|+.+    +|+..+   .....+.-|...+.+++  ..+. ..|+.+++||+.++ ||
T Consensus       177 VE~GETlE~AV~REv~EE~Gi~V~~v----rY~~SQPWPfP~SLMigf~aey~sge--I~~d-~~Eleda~WFs~~evl~  249 (279)
T COG2816         177 VEPGETLEQAVAREVFEEVGIKVKNV----RYVGSQPWPFPHSLMLGFMAEYDSGE--ITPD-EGELEDARWFSRDEVLP  249 (279)
T ss_pred             ccCCccHHHHHHHHHHHhhCeEEeee----eEEeccCCCCchhhhhhheeeecccc--ccCC-cchhhhccccCHhHHhh
Confidence            35679999999999999999999975    344322   12233444566665554  3343 37999999999999 88


Q ss_pred             CCchh
Q psy13065         78 SSRKE   82 (114)
Q Consensus        78 ~~~~~   82 (114)
                      .+..+
T Consensus       250 ~L~~~  254 (279)
T COG2816         250 ALPPD  254 (279)
T ss_pred             hcCCC
Confidence            88764

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=98.79  E-value=2.4e-08  Score=65.99  Aligned_cols=75  Identities=13%  Similarity=0.091  Sum_probs=46.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      +++.|++.+||.||++||||+++...-....+.+...... .+.+|.+......    . ...|..++.|+++++++...
T Consensus        37 ~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~~  111 (124)
T cd03425          37 VEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTLHVFLVELWSGE----P-QLLEHQELRWVPPEELDDLD  111 (124)
T ss_pred             cCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEEEEEEEeeeCCC----c-ccccCceEEEeeHHHcccCC
Confidence            4678999999999999999999874211112222222222 3444444422111    1 13578899999999998754


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       112 ~  112 (124)
T cd03425         112 F  112 (124)
T ss_pred             C
Confidence            3

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=98.79  E-value=1.2e-08  Score=75.73  Aligned_cols=80  Identities=11%  Similarity=-0.054  Sum_probs=52.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEec-cCC-CCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPG-VPI-DFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~-~~~-~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||+.|||||.+..+.....|.. .....+..++|++.. ... .......+.+|..++.|++++++..
T Consensus        91 vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~  170 (202)
T PRK10729         91 IEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ  170 (202)
T ss_pred             cCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCcCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHH
Confidence            5778999999999999999999986433223332 223446678887763 211 1111122345667799999998876


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       171 ~~~  173 (202)
T PRK10729        171 WVE  173 (202)
T ss_pred             HHH
Confidence            654

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.78  E-value=2e-08  Score=69.98  Aligned_cols=25  Identities=24%  Similarity=0.266  Sum_probs=22.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH   26 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~   26 (114)
                      .+..|++.+||+||++||||+++..
T Consensus        42 ie~~E~~~~aA~REl~EEtGl~~~~   66 (126)
T cd04662          42 YTEGEDPLLAAKREFSEETGFCVDG   66 (126)
T ss_pred             CCCCcCHHHHHHHHHHHHhCCccee
Confidence            4678999999999999999999864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=98.77  E-value=1.4e-08  Score=80.55  Aligned_cols=77  Identities=17%  Similarity=0.244  Sum_probs=47.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eee--cceeeeecc----CCeE-EEEEEEeccCCCCccCcCCcCcccceEEEe
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIA--EDSYLETTY----NDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFP   72 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~--~~~y~~~~~----~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~   72 (114)
                      ++..||+.+||+||++|||||++..  +..  ...+...+.    .++. .++|++. ++.+........+|..+++|++
T Consensus       237 ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~~~~~i~~~f~~~-~~~~~~~~~~~~de~~~~~W~~  315 (340)
T PRK05379        237 LEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSLRGRTITHAFLFE-FPAGELPRVKGGDDADKARWVP  315 (340)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCCCCcEEEEEEEEE-ecCCccCccCCCCceeeEEEEE
Confidence            4678999999999999999999863  211  111221111    2233 3444443 3322112223457899999999


Q ss_pred             CCCCCCC
Q psy13065         73 IGDLPSS   79 (114)
Q Consensus        73 id~lp~~   79 (114)
                      +++++.+
T Consensus       316 ~~el~~~  322 (340)
T PRK05379        316 LAELLAM  322 (340)
T ss_pred             HHHhhhh
Confidence            9999864

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.75  E-value=1e-08  Score=71.21  Aligned_cols=82  Identities=12%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee---eeecce--eeeeccCCeEEEEEEEeccCC-CCcc---CcCCcCcccceEEEe
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH---LIAEDS--YLETTYNDQLTRLYLIPGVPI-DFKF---APQTRGEIKACQWFP   72 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~---li~~~~--y~~~~~~~~~~~lfv~~~~~~-~~~~---~p~~~~EI~~i~Wf~   72 (114)
                      .+..||+.+||.||++||||+++..   ++....  |.......+...+|+.+..+. ....   .....+++.+++|++
T Consensus        37 ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~  116 (133)
T cd04685          37 VEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWT  116 (133)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCC
Confidence            3678999999999999999999843   222222  222222222233333333332 1111   111224577899999


Q ss_pred             CCCCCCCchhh
Q psy13065         73 IGDLPSSRKEI   83 (114)
Q Consensus        73 id~lp~~~~~~   83 (114)
                      +++|.....+.
T Consensus       117 ~~el~~~~~~~  127 (133)
T cd04685         117 RAELAATPETV  127 (133)
T ss_pred             HHHHhhCCCcc
Confidence            99998764433

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=98.73  E-value=4.7e-08  Score=65.44  Aligned_cols=73  Identities=15%  Similarity=0.152  Sum_probs=45.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||.||++||||+++..  .++.  +.+...+... +.+|.+....+    .+ ...|..+++|+++++++.
T Consensus        40 ~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~-~~~e~~~~~W~~~~~l~~  112 (129)
T PRK10776         40 IEAGETPEQALIRELQEEVGITVQHATLFEK--LEYEFPDRHITLWFWLVESWEG----EP-WGKEGQPGRWVSQVALNA  112 (129)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCceecceEEEE--EEeeCCCcEEEEEEEEEEEECC----cc-CCccCCccEEecHHHCcc
Confidence            4678999999999999999998764  2221  1122222332 34444432211    12 134778899999999997


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      ...
T Consensus       113 ~~~  115 (129)
T PRK10776        113 DEF  115 (129)
T ss_pred             CCC
Confidence            643

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=98.73  E-value=1.2e-08  Score=75.28  Aligned_cols=77  Identities=12%  Similarity=0.046  Sum_probs=50.7

Q ss_pred             CCCHHHHHHHHhhhhhCceeeeeeeccee-eeeccCCeEEEEEEEeccCCC-CccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          5 IMMNIISEAKQVLEETGFDSSHLIAEDSY-LETTYNDQLTRLYLIPGVPID-FKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         5 ~es~~eaAvREv~EETGl~v~~li~~~~y-~~~~~~~~~~~lfv~~~~~~~-~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      .++|.+||+||++||||+.+..+.....+ .......+..++|++...... ....+.+.+|..++.|++++++..+..
T Consensus        90 ~~~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~  168 (191)
T PRK15009         90 NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIK  168 (191)
T ss_pred             CCCHHHHHHHHHHHhhCCccceEEEeeEEEcCCcccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHH
Confidence            45899999999999999999865432232 222334566788888653211 111122346778899999999876653

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.71  E-value=5.4e-08  Score=66.65  Aligned_cols=73  Identities=16%  Similarity=0.079  Sum_probs=46.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeecc-CCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTY-NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~-~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      .+..|++.+||.||++||||+++..+.....|..... ......+|++......   ......|+..+.||+.+...
T Consensus        30 ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y~a~~~~~~---~~~~~~E~~~~~~~~~~~~~  103 (118)
T cd04665          30 VEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVYPAVSAQLE---EKASYLETDGPVLFKNEPEE  103 (118)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEEEEEEEecc---cccccccccCcEEeccCCcc
Confidence            4678999999999999999999975322223332211 2334455555433221   11245799999999976654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=98.69  E-value=2.3e-08  Score=73.32  Aligned_cols=80  Identities=13%  Similarity=0.035  Sum_probs=50.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCC-ccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDF-KFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~-~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      .+..|++++||+||++||||+++..+.....+.. ........++|++....... ...+...+|-.++.|++++++..+
T Consensus        86 ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~  165 (185)
T TIGR00052        86 VEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQW  165 (185)
T ss_pred             cCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCCCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHH
Confidence            5778999999999999999999986432222222 22234556777765322111 111223345567889999887765


Q ss_pred             ch
Q psy13065         80 RK   81 (114)
Q Consensus        80 ~~   81 (114)
                      ..
T Consensus       166 ~~  167 (185)
T TIGR00052       166 IK  167 (185)
T ss_pred             HH
Confidence            43

>TIGR00586 mutt mutator mutT protein

Probab=98.68  E-value=9.1e-08  Score=64.31  Aligned_cols=73  Identities=14%  Similarity=-0.021  Sum_probs=44.7

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++.||+.+||+||++||||+++..  .+..  +.+.....+. +.+|.+. ..++   .+. ..+..++.|+++++++.+
T Consensus        41 e~ge~~~~~~~RE~~EE~g~~~~~~~~~~~--~~h~~~~~~~~~~~~~~~-~~~~---~~~-~~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        41 EGGETPEQAVVRELEEEIGIPQHFSEFEKL--EYEFYPRHITLWFWLLER-WEGG---PPG-KEGQPEEWWVLVGLLADD  113 (128)
T ss_pred             CCCCCHHHHHHHHHHHHHCCcceeeeEEEE--EEEECCCcEEEEEEEEEE-EcCC---CcC-cccccccEEeCHHHCCcc
Confidence            578999999999999999999764  2221  1111222222 2333333 2221   111 345678899999999987


Q ss_pred             chh
Q psy13065         80 RKE   82 (114)
Q Consensus        80 ~~~   82 (114)
                      ...
T Consensus       114 ~~p  116 (128)
T TIGR00586       114 FFP  116 (128)
T ss_pred             CCC
Confidence            654

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.67  E-value=3.5e-08  Score=71.26  Aligned_cols=78  Identities=22%  Similarity=0.304  Sum_probs=47.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--e---ecceeeee-ccCC---eEEEEEEEeccCCCCccCcCCcCcccceEEEe
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--I---AEDSYLET-TYND---QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP   72 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i---~~~~y~~~-~~~~---~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~   72 (114)
                      .+..||+.+||+||++|||||++..+  +   +.-.|... ...+   +..++|.+. ++.+....+ ..+|+.++.|++
T Consensus        74 v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~~e~~~~f~~~-~~~~~~~~~-~~~Ev~~~~~~~  151 (180)
T cd03676          74 LGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYDLE-LPPDFIPAP-QDGEVESFRLLT  151 (180)
T ss_pred             CCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEeeeEEEEEEEE-cCCCCeeCC-CCCcEeEEEEEC
Confidence            35689999999999999999998742  1   11123322 1111   233444332 332222223 347999999999


Q ss_pred             CCCCCCCch
Q psy13065         73 IGDLPSSRK   81 (114)
Q Consensus        73 id~lp~~~~   81 (114)
                      ++++..+..
T Consensus       152 ~~el~~~l~  160 (180)
T cd03676         152 IDEVLRALK  160 (180)
T ss_pred             HHHHHHHHH
Confidence            998876553

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=98.67  E-value=1.3e-08  Score=72.45  Aligned_cols=72  Identities=17%  Similarity=0.344  Sum_probs=44.7

Q ss_pred             cCCCHHHHHHHHhhhhhCceeeee----eecceeeeeccCC-e-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          4 EIMMNIISEAKQVLEETGFDSSHL----IAEDSYLETTYND-Q-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         4 ~~es~~eaAvREv~EETGl~v~~l----i~~~~y~~~~~~~-~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      ..|  .+||+||++||||+++...    +..-.|...+.++ + ...+|.+.. ..  ...+ ..+|+.+++|+++++++
T Consensus        67 ~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g~~~~~~~f~~~~-~~--~~~~-~~~Ev~~~~W~~~~el~  140 (158)
T TIGR02150        67 PGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWGEHELCPVFFARA-PV--PLNP-NPEEVAEYRWVSLEELK  140 (158)
T ss_pred             ccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCCcEEEEEEEEEec-CC--cccC-ChhHeeeEEEeCHHHHH
Confidence            345  4999999999999998752    2212233222222 2 234444442 22  2333 24699999999999998


Q ss_pred             CCch
Q psy13065         78 SSRK   81 (114)
Q Consensus        78 ~~~~   81 (114)
                      .+..
T Consensus       141 ~~~~  144 (158)
T TIGR02150       141 EILK  144 (158)
T ss_pred             HHHh
Confidence            7665

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK08999 hypothetical protein; Provisional

Probab=98.63  E-value=1.2e-07  Score=73.58  Aligned_cols=96  Identities=13%  Similarity=0.063  Sum_probs=58.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      +++.||+.+||+||++||||+++........+.+...+.. .+.+|.+....+    .++ ..|..+++|+++++++.+.
T Consensus        41 ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i~~y~~~~~~~----~~~-~~e~~~~~Wv~~~el~~~~  115 (312)
T PRK08999         41 VEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRLDVRRVTAWQG----EPH-GREGQPLAWVAPDELAVYP  115 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEEEEEEEEEecC----ccc-CccCCccEEecHHHcccCC
Confidence            4678999999999999999999874211111111112222 344554443221    122 3577889999999999865


Q ss_pred             hhhhhhhccCCCCCCCceEEEcc
Q psy13065         81 KEIKTVLINGTPVGTNAFFMIMP  103 (114)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~  103 (114)
                      .......+-. .......|+|+|
T Consensus       116 ~~~~~~~i~~-~l~lp~ly~it~  137 (312)
T PRK08999        116 FPPANQPIVR-ALRLPDTYLITP  137 (312)
T ss_pred             CCcchHHHHH-HhcCCCEEEEEC
Confidence            5444444332 133457899885

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=98.63  E-value=5.9e-08  Score=71.48  Aligned_cols=74  Identities=12%  Similarity=0.051  Sum_probs=44.6

Q ss_pred             CCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          5 IMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         5 ~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      .+++.+||+||++||||++++.+.....+.. ....+..+..|++.. .......+ +.+|+.++.|++++++....
T Consensus        73 de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~~~~~v~~~-~~~~~~~~-d~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707         73 DASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGYQVTPVVGII-PPDLPYRA-NEDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             cccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCcEEEEEEEEE-CCCCCCCC-ChhhhheEEEEeHHHHhCcc
Confidence            5789999999999999999875321111111 111233333333321 11112222 45799999999999988765

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=98.60  E-value=1.7e-07  Score=69.14  Aligned_cols=84  Identities=7%  Similarity=-0.015  Sum_probs=48.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee-------------e---ecceeee--eccCC------eEEEEEEEeccCCC-Cc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL-------------I---AEDSYLE--TTYND------QLTRLYLIPGVPID-FK   56 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l-------------i---~~~~y~~--~~~~~------~~~~lfv~~~~~~~-~~   56 (114)
                      ++..||+.+||+||++||||+++...             +   ....|..  ..+..      ..+.+++....... ..
T Consensus        69 v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~  148 (186)
T cd03670          69 VDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVEN  148 (186)
T ss_pred             ccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccccEEEeccccCCCCCCcceEEEEEEEEEecCcccccc
Confidence            57899999999999999998764321             0   0111211  11111      23333332211000 01


Q ss_pred             cCcCCcCcccceEEEeCCCCCCCchhhhh
Q psy13065         57 FAPQTRGEIKACQWFPIGDLPSSRKEIKT   85 (114)
Q Consensus        57 ~~p~~~~EI~~i~Wf~id~lp~~~~~~~~   85 (114)
                      ..++..++..+++||+++++|.+..+-..
T Consensus       149 ~~~~a~dda~~a~W~~v~~l~~L~~dH~~  177 (186)
T cd03670         149 LPLEAGDDAGSVRWQDIDSKLPLYANHSQ  177 (186)
T ss_pred             cccCCCCchheeEEEEcccccccccCHHH
Confidence            22334568999999999999977665443

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.57  E-value=4.3e-07  Score=63.16  Aligned_cols=74  Identities=14%  Similarity=0.111  Sum_probs=41.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee---ee-cceeeeeccCCeEEEEEEEec---cCCCCccCcCCcCcccceE--EEe
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL---IA-EDSYLETTYNDQLTRLYLIPG---VPIDFKFAPQTRGEIKACQ--WFP   72 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l---i~-~~~y~~~~~~~~~~~lfv~~~---~~~~~~~~p~~~~EI~~i~--Wf~   72 (114)
                      .+..||+.+||+||++||||+++...   .. ...+..  ...+.++++++..   .+......++ .+|...+.  |++
T Consensus        33 ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~-~~E~~~i~~~Wv~  109 (126)
T cd04663          33 VEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFY--QKRHFWHLTLCEVDQDLPDSWVHFVQ-DDGGHEFRFFWVD  109 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEe--eccEEEEEEEEEecCCCcccccCccc-CCCCceEEEEEEc
Confidence            46789999999999999999997321   11 111111  1233344444322   1223323333 23445555  999


Q ss_pred             CCCCCC
Q psy13065         73 IGDLPS   78 (114)
Q Consensus        73 id~lp~   78 (114)
                      +++++.
T Consensus       110 l~~~~~  115 (126)
T cd04663         110 LASCLD  115 (126)
T ss_pred             cccccc
Confidence            999854

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.54  E-value=9.1e-08  Score=67.39  Aligned_cols=78  Identities=14%  Similarity=0.182  Sum_probs=45.4

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeeee------eecc--eeeeec----cCCeEEEEEEEe-ccCCC--C--ccCcCCcCcc
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSHL------IAED--SYLETT----YNDQLTRLYLIP-GVPID--F--KFAPQTRGEI   65 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~l------i~~~--~y~~~~----~~~~~~~lfv~~-~~~~~--~--~~~p~~~~EI   65 (114)
                      +..|++.+||+||++||||+++...      +...  .|-...    ...++..+|++. .....  .  ...+ ..+|+
T Consensus        39 ~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~-~~~Ev  117 (143)
T cd04694          39 ELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQARLQP-DPNEV  117 (143)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCcccceeEEEEEEEEeccccccccccccC-Chhhc
Confidence            4578999999999999999998642      2111  111110    112334444432 22111  1  1112 24799


Q ss_pred             cceEEEeCCCCCCCch
Q psy13065         66 KACQWFPIGDLPSSRK   81 (114)
Q Consensus        66 ~~i~Wf~id~lp~~~~   81 (114)
                      .+++|++++++.....
T Consensus       118 ~~~~Wv~~~~a~~~~~  133 (143)
T cd04694         118 SAAAWLDKSLAKAVVS  133 (143)
T ss_pred             cceEeeCHHHHHHHHH
Confidence            9999999998765543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=98.51  E-value=8.2e-08  Score=73.57  Aligned_cols=73  Identities=16%  Similarity=0.213  Sum_probs=42.3

Q ss_pred             CHHHHHHHHhhhhhCceeee-----eeecce--eeee-----ccCC----eEE-EEEEEeccCCCCccCcCCcCcccceE
Q psy13065          7 MNIISEAKQVLEETGFDSSH-----LIAEDS--YLET-----TYND----QLT-RLYLIPGVPIDFKFAPQTRGEIKACQ   69 (114)
Q Consensus         7 s~~eaAvREv~EETGl~v~~-----li~~~~--y~~~-----~~~~----~~~-~lfv~~~~~~~~~~~p~~~~EI~~i~   69 (114)
                      +..+||+||++|||||++..     +.....  |...     ++++    +.+ .+|+..... +....++ .+|+.+++
T Consensus       116 ~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~-~~~l~lq-~eEV~~~~  193 (247)
T PLN02552        116 GVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVR-DVKVNPN-PDEVADVK  193 (247)
T ss_pred             hHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecC-CCcccCC-HHHhheEE
Confidence            37899999999999999653     111111  1111     1112    222 223332222 2233333 47999999


Q ss_pred             EEeCCCCCCCch
Q psy13065         70 WFPIGDLPSSRK   81 (114)
Q Consensus        70 Wf~id~lp~~~~   81 (114)
                      |+++++++.+..
T Consensus       194 wvs~~el~~~~~  205 (247)
T PLN02552        194 YVNREELKEMMR  205 (247)
T ss_pred             EEeHHHHHHHHh
Confidence            999999997643

>PLN03143 nudix hydrolase; Provisional

Probab=98.51  E-value=1.4e-07  Score=73.92  Aligned_cols=86  Identities=19%  Similarity=0.204  Sum_probs=53.2

Q ss_pred             Cccc-CCCHHHHHHHHhhhhhCceee--eeeec----------ceeeeeccCCeEEEEEEEeccCCCC-------c-cCc
Q psy13065          1 MMEE-IMMNIISEAKQVLEETGFDSS--HLIAE----------DSYLETTYNDQLTRLYLIPGVPIDF-------K-FAP   59 (114)
Q Consensus         1 ~~~~-~es~~eaAvREv~EETGl~v~--~li~~----------~~y~~~~~~~~~~~lfv~~~~~~~~-------~-~~p   59 (114)
                      |+|. .+++.+||+||++|||||.+.  .++..          ..|.......+.+++|++.+.-...       . ...
T Consensus       166 ~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l  245 (291)
T PLN03143        166 MLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGL  245 (291)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCccCCeEEEEEEccccchhhhcccccccCCC
Confidence            4565 489999999999999999864  23322          1222222234567778766542110       0 011


Q ss_pred             CCcCcccceEEEeCCCCCCCchhhhhh
Q psy13065         60 QTRGEIKACQWFPIGDLPSSRKEIKTV   86 (114)
Q Consensus        60 ~~~~EI~~i~Wf~id~lp~~~~~~~~~   86 (114)
                      .+.+|..++.|++++++..+..++++.
T Consensus       246 ~degE~Iev~~vpl~eiw~~~aD~ktl  272 (291)
T PLN03143        246 RDHGELIKVHVVPYRELWRMTADAKVL  272 (291)
T ss_pred             CCCCcEEEEEEEEHHHHHHHHHhHHHH
Confidence            234577789999999987776555543

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=98.50  E-value=1e-06  Score=60.48  Aligned_cols=77  Identities=16%  Similarity=0.002  Sum_probs=42.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee-eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH-LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~-li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||.||++||||+++.. .+..- ........+...+++......  ...+....+..+..|+.++.+|.+.
T Consensus        38 ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~E~~~~~~~~~~~~~~  114 (118)
T cd04674          38 IELGETWQDAVARELLEETGVAVDPADIRLF-DVRSAPDGTLLVFGLLPERRA--ADLPPFEPTDETTERAVVTAPSELA  114 (118)
T ss_pred             cCCCCCHHHHHHHHHHHHHCCcccccEEEEE-EEEecCCCeEEEEEEEecccc--ccCCCCCCCcceeeEEEccCCcccc
Confidence            5788999999999999999999873 22111 111222333333323322211  1122233344555677777777655


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       115 ~  115 (118)
T cd04674         115 F  115 (118)
T ss_pred             c
Confidence            3

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=98.47  E-value=4.3e-07  Score=60.02  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=42.5

Q ss_pred             ccCCCHHH-HHHHHhhhhhCceeee--eeecceeeeecc-C----CeEEEEEEEeccCCCCccCcCC----cCcccceEE
Q psy13065          3 EEIMMNII-SEAKQVLEETGFDSSH--LIAEDSYLETTY-N----DQLTRLYLIPGVPIDFKFAPQT----RGEIKACQW   70 (114)
Q Consensus         3 ~~~es~~e-aAvREv~EETGl~v~~--li~~~~y~~~~~-~----~~~~~lfv~~~~~~~~~~~p~~----~~EI~~i~W   70 (114)
                      +..|++.+ ||+||++||||+++..  +.....+..... .    ......++..............    ..|+..+.|
T Consensus        46 e~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~  125 (161)
T COG0494          46 EPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEW  125 (161)
T ss_pred             CCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEEEEEEeeeccccccccccccCCCcchhhceee
Confidence            44556677 9999999999999983  222222211110 0    1111111222111111111111    258999999


Q ss_pred             EeCCCCCCCchh
Q psy13065         71 FPIGDLPSSRKE   82 (114)
Q Consensus        71 f~id~lp~~~~~   82 (114)
                      ++++++......
T Consensus       126 ~~~~~~~~~~~~  137 (161)
T COG0494         126 VPLDELAALVLA  137 (161)
T ss_pred             eeHHHccccccc
Confidence            999988877653

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=98.41  E-value=6.7e-07  Score=64.29  Aligned_cols=74  Identities=16%  Similarity=0.156  Sum_probs=47.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeecc-CCeEEEEEEEeccCCCCccCcCCcCcccceE-EEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTY-NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQ-WFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~-~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~-Wf~id~lp~~   79 (114)
                      .+..||+.+||+||++||||+.+..+.....|..... ......+|++.....    ++.  +|..++. ++++++++..
T Consensus        54 vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~~~~~----~~~--~e~~E~~~~~~~~~~~~~  127 (156)
T TIGR02705        54 VEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAEVSAL----ESK--DDYLETKGPVLLQEIPDI  127 (156)
T ss_pred             cCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEEEecc----ccC--CCceeeEeEEEHHHHHHH
Confidence            3678999999999999999999986433233433221 223456666654422    222  4544555 7999888765


Q ss_pred             ch
Q psy13065         80 RK   81 (114)
Q Consensus        80 ~~   81 (114)
                      ..
T Consensus       128 ~~  129 (156)
T TIGR02705       128 IK  129 (156)
T ss_pred             Hh
Confidence            54

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PLN02709 nudix hydrolase

Probab=98.28  E-value=1.2e-06  Score=66.24  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=45.5

Q ss_pred             CCCHHHHHHHHhhhhhCceeee--eeec-ceeeeeccCCeEEEEEEEec-cCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          5 IMMNIISEAKQVLEETGFDSSH--LIAE-DSYLETTYNDQLTRLYLIPG-VPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         5 ~es~~eaAvREv~EETGl~v~~--li~~-~~y~~~~~~~~~~~lfv~~~-~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      .+|+.+||+||+.||+||+...  +++. ..+. . ..+..+.=|++.- -+......+ +.+|+.++-|++++.+....
T Consensus        80 D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~-t-~sg~~V~P~V~~~~~~~~~~~~~-np~EV~~vf~vPL~~ll~~~  156 (222)
T PLN02709         80 DKDDIATALREAREEIGLDPSLVTIISVLEPFV-N-KKGMSVAPVIGFLHDKKAFKPLP-NPAEVEEIFDVPLEMFLKDK  156 (222)
T ss_pred             CCCHHHHHHHHHHHHHCCCchheEEeeecCCeE-C-CCCCEEEEEEEEecCCCCccccC-ChhhhheeEEecHHHHhCCc
Confidence            3688999999999999998863  4442 2222 2 2233344344311 111222222 45799999999999887654


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       157 ~  157 (222)
T PLN02709        157 N  157 (222)
T ss_pred             c
Confidence            3

>KOG3041|consensus

Probab=97.96  E-value=1.4e-05  Score=59.67  Aligned_cols=82  Identities=17%  Similarity=0.259  Sum_probs=48.3

Q ss_pred             CcccCCCHHHHHHHHhhhhhCceeee-eeecceeeeeccCC--eEEEEEEEec-cCCCCccCcC-CcCcccceEEEeCCC
Q psy13065          1 MMEEIMMNIISEAKQVLEETGFDSSH-LIAEDSYLETTYND--QLTRLYLIPG-VPIDFKFAPQ-TRGEIKACQWFPIGD   75 (114)
Q Consensus         1 ~~~~~es~~eaAvREv~EETGl~v~~-li~~~~y~~~~~~~--~~~~lfv~~~-~~~~~~~~p~-~~~EI~~i~Wf~id~   75 (114)
                      |.+.-|++.+||+||++|||||.-+. ..++.-|......+  ..+.++-+.+ .+++....++ .+.|--++.=++..+
T Consensus       111 LiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~  190 (225)
T KOG3041|consen  111 LIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSE  190 (225)
T ss_pred             cccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHH
Confidence            46778999999999999999998443 22344455443222  2233333332 4444333322 235777777777777


Q ss_pred             CCCCchh
Q psy13065         76 LPSSRKE   82 (114)
Q Consensus        76 lp~~~~~   82 (114)
                      |+.-..+
T Consensus       191 L~~~~~~  197 (225)
T KOG3041|consen  191 LWRELAD  197 (225)
T ss_pred             HHHHHHh
Confidence            6654443

>KOG2839|consensus

Probab=97.87  E-value=1e-05  Score=57.43  Aligned_cols=77  Identities=14%  Similarity=0.204  Sum_probs=45.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee---eecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL---IAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l---i~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      +|-.||+.+||+||+.||.|+.-...   .+..++..+..... ....|+. .+......-|....|-...+|+.++|.-
T Consensus        45 wE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~~~~k~~~~~l-~v~e~le~wp~~~~~~r~r~W~~ledA~  123 (145)
T KOG2839|consen   45 WEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHRTKPKGVMYVL-AVTEELEDWPESEHEFREREWLKLEDAI  123 (145)
T ss_pred             CCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhcccccceeehh-hhhhhcccChhhhcccceeEEeeHHHHH
Confidence            46789999999999999999987742   22223332211111 1122333 2222333335455678999999997764


Q ss_pred             CC
Q psy13065         78 SS   79 (114)
Q Consensus        78 ~~   79 (114)
                      +.
T Consensus       124 ~~  125 (145)
T KOG2839|consen  124 EL  125 (145)
T ss_pred             HH
Confidence            43

>PLN02791 Nudix hydrolase homolog

Probab=97.79  E-value=3.5e-05  Score=67.20  Aligned_cols=77  Identities=18%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeee--eeecceeeee---c----cCCeEEEEEEEeccCCC--CccCcCCcCcccceEEE
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET---T----YNDQLTRLYLIPGVPID--FKFAPQTRGEIKACQWF   71 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~---~----~~~~~~~lfv~~~~~~~--~~~~p~~~~EI~~i~Wf   71 (114)
                      .-.||+.+||+||++||+||++..  +.....+...   .    ......++|++..+...  ..+.++ .+|+.++.|+
T Consensus        72 ~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq-~eEV~~v~wv  150 (770)
T PLN02791         72 SAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQ-ESEVSAVKYM  150 (770)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCC-hhhhheeEEE
Confidence            456899999999999999998742  2111111111   1    11234556665422211  123343 4799999999


Q ss_pred             eCCCCCCCc
Q psy13065         72 PIGDLPSSR   80 (114)
Q Consensus        72 ~id~lp~~~   80 (114)
                      +++++..+.
T Consensus       151 sl~El~~~l  159 (770)
T PLN02791        151 SIEEYKSAL  159 (770)
T ss_pred             cHHHHHHHH
Confidence            999886544

>KOG3084|consensus

Probab=97.53  E-value=6.1e-05  Score=59.67  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=23.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL   27 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l   27 (114)
                      +|--||.+|||+||++||||++|+.+
T Consensus       222 lEpGES~eeav~REtwEEtGi~V~~I  247 (345)
T KOG3084|consen  222 LEPGESIEEAVRRETWEETGIEVEVI  247 (345)
T ss_pred             CCccccHHHHHHHHHHHHhCceeeeE
Confidence            56679999999999999999999964

>KOG0648|consensus

Probab=97.29  E-value=3e-05  Score=60.81  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=43.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccC-CCCccCcCCcCcccceEEEeCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVP-IDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~-~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      .++-|++.++|+|||+||||++-.-  .+...+-+.........+.|+.|.+- .+..... ...||..++|+++.+.-
T Consensus       152 v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~-~~~ei~~~~Wmp~~e~v  229 (295)
T KOG0648|consen  152 VEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGLIKSDMFFTCELRPRSLDITK-CKREIEAAAWMPIEEYV  229 (295)
T ss_pred             ecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcchhhcccccceeEEEeeccccccch-hHHHHHHHhcccHHHhh
Confidence            3678999999999999999996652  22111111110111134456655543 2222222 24599999999998543

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=96.91  E-value=0.0012  Score=46.54  Aligned_cols=74  Identities=14%  Similarity=0.165  Sum_probs=46.1

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeee-eeecceeeeeccCCeEEEEEEEec---------------cCCCCccCcCCcCccc
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSH-LIAEDSYLETTYNDQLTRLYLIPG---------------VPIDFKFAPQTRGEIK   66 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~-li~~~~y~~~~~~~~~~~lfv~~~---------------~~~~~~~~p~~~~EI~   66 (114)
                      .+-|++.-||.||.-||+|+.|+. +++...+.  +..++.+..|-+..               .|.. .+.-+.=.|+.
T Consensus        46 ~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~k--Q~GGKvVta~~veae~Dva~~rSntFe~eWPpr-SG~M~~FPEVD  122 (161)
T COG4119          46 TGGEDPWLAARREFSEEIGICVDGPRIDLGSLK--QSGGKVVTAFGVEAELDVADARSNTFELEWPPR-SGKMRKFPEVD  122 (161)
T ss_pred             CCCcCHHHHHHHHhhhhhceeecCchhhhhhhc--cCCCcEEEEEeeeeeeehhhhhcceeeeecCCC-CCccccCcccc
Confidence            467899999999999999999985 44333332  23455565554432               1100 01111124899


Q ss_pred             ceEEEeCCCCCCC
Q psy13065         67 ACQWFPIGDLPSS   79 (114)
Q Consensus        67 ~i~Wf~id~lp~~   79 (114)
                      ...||++.+....
T Consensus       123 RagWF~l~eAr~K  135 (161)
T COG4119         123 RAGWFPLAEARTK  135 (161)
T ss_pred             cccceecHHHHhH
Confidence            9999998765543

>KOG3069|consensus

Probab=96.91  E-value=0.00085  Score=51.28  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=45.1

Q ss_pred             cCCCHHHHHHHHhhhhhCceeee--eee-cceeeeeccCCe--EEEEEEEec-cCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          4 EIMMNIISEAKQVLEETGFDSSH--LIA-EDSYLETTYNDQ--LTRLYLIPG-VPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         4 ~~es~~eaAvREv~EETGl~v~~--li~-~~~y~~~~~~~~--~~~lfv~~~-~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      +..|.++||.||.+||.|++.+.  +++ ...+..+ .+..  -+..|+... +-  .... ....|+.++-|+|++++-
T Consensus        86 ~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r-~~~~v~p~v~~l~~~~~l--~~~~-ln~gEv~~~F~VPL~~ll  161 (246)
T KOG3069|consen   86 HDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLR-SGWSVFPVVGFLSDKKIL--PSLR-LNSGEVESAFWVPLTDLL  161 (246)
T ss_pred             cccchHHHHHHHHHHHhCCCHHHhhhhhhccceeec-cCcccceeEEEEeccccc--cccc-CCchheeeeeeeeHHHHh
Confidence            45688899999999999999864  222 1122222 1222  122233221 10  1111 234799999999999988


Q ss_pred             CCchhh
Q psy13065         78 SSRKEI   83 (114)
Q Consensus        78 ~~~~~~   83 (114)
                      ......
T Consensus       162 ~~~~~~  167 (246)
T KOG3069|consen  162 LPKHQT  167 (246)
T ss_pred             hhhcch
Confidence            776644

>PLN02839 nudix hydrolase

Probab=96.83  E-value=0.0015  Score=52.81  Aligned_cols=74  Identities=22%  Similarity=0.284  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHhhhhhCceee---eeeec--ceeeeeccCC-eEEEEEEEe-ccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          5 IMMNIISEAKQVLEETGFDSS---HLIAE--DSYLETTYND-QLTRLYLIP-GVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         5 ~es~~eaAvREv~EETGl~v~---~li~~--~~y~~~~~~~-~~~~lfv~~-~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      -|++.+|++||+.||.||...   .+...  -.|......+ +.-.+|+.. .+|.+....++ +.|+.+..+++++++-
T Consensus       247 Gesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YDLeLP~df~P~~q-DGEVe~F~Lm~v~EV~  325 (372)
T PLN02839        247 GISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQ-DGEVESFKLIPVAQVA  325 (372)
T ss_pred             CCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEeeeecCCccccCCC-ccceeEEEEecHHHHH
Confidence            589999999999999999755   22221  2233222111 222334322 35555544444 4699999999998875


Q ss_pred             CC
Q psy13065         78 SS   79 (114)
Q Consensus        78 ~~   79 (114)
                      ..
T Consensus       326 ~~  327 (372)
T PLN02839        326 NV  327 (372)
T ss_pred             HH
Confidence            33

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=96.11  E-value=0.0049  Score=45.35  Aligned_cols=76  Identities=12%  Similarity=0.129  Sum_probs=46.9

Q ss_pred             cCCCHHHHHHHHhhhhhCceeee--e---eecceeeeeccCC--eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          4 EIMMNIISEAKQVLEETGFDSSH--L---IAEDSYLETTYND--QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         4 ~~es~~eaAvREv~EETGl~v~~--l---i~~~~y~~~~~~~--~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      ..||..+||+|-+.+|.|+.+..  .   +..-+|.....++  ++-..|++.+...+ .+.+ ..+|+.+.+|++++++
T Consensus        73 ~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~~~E~Eic~V~~~~~~~-~~~~-npdEV~~~~wv~~e~l  150 (185)
T COG1443          73 PGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDGIVENEICPVLAARLDS-ALDP-NPDEVMDYRWVSPEDL  150 (185)
T ss_pred             CCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCCCCcceeeeeeEEEEeecC-CCCC-ChHHhhheeccCHHHH
Confidence            35899999999999999999984  1   1122333332222  22222333222221 3444 3589999999999887


Q ss_pred             CCCch
Q psy13065         77 PSSRK   81 (114)
Q Consensus        77 p~~~~   81 (114)
                      -....
T Consensus       151 ~~~~~  155 (185)
T COG1443         151 KEMVD  155 (185)
T ss_pred             HHhhc
Confidence            65553

>KOG4432|consensus

Probab=89.22  E-value=1  Score=36.07  Aligned_cols=100  Identities=13%  Similarity=0.195  Sum_probs=57.0

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeee--eeecceeeeec-cCCeEEEEEEEe--ccCC-CCccCcCCcCcccceEEEeCCCC
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETT-YNDQLTRLYLIP--GVPI-DFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~-~~~~~~~lfv~~--~~~~-~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      +.+-|..+-|.||+.||.||++-.  +--...|+... ..+.....|.+.  .... +.-+-....+|+.++-=++++++
T Consensus       294 d~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a  373 (405)
T KOG4432|consen  294 DDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDA  373 (405)
T ss_pred             CCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhh
Confidence            455688899999999999999963  22223344321 123333333331  1110 01111123457788888899998


Q ss_pred             CCCchhhhhhhccCCCCCCCceEEEccchHhH
Q psy13065         77 PSSRKEIKTVLINGTPVGTNAFFMIMPFINSI  108 (114)
Q Consensus        77 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
                      |.+-.   +++|+   ...+-+|-+.=|+.++
T Consensus       374 ~~~~~---q~~I~---~~lt~~~gi~wfl~q~  399 (405)
T KOG4432|consen  374 PSLYR---QHNIG---PPLTTYYGIGWFLDQL  399 (405)
T ss_pred             hHHHh---ccCCC---CCcceeeeHHHHHhhh
Confidence            87654   44455   3346677776666554

>KOG4432|consensus

Probab=86.17  E-value=0.96  Score=36.27  Aligned_cols=46  Identities=17%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeee--eeecceeeee-ccCCeEEEEEEE
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET-TYNDQLTRLYLI   48 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~-~~~~~~~~lfv~   48 (114)
                      ++.-|+.+-|..||.||.|++|..  ++....|... +..+.-.++|.+
T Consensus        89 dke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~  137 (405)
T KOG4432|consen   89 DKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYA  137 (405)
T ss_pred             ccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCccchheeee
Confidence            456899999999999999999984  5544444322 112333455554

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=83.55  E-value=3.9  Score=26.12  Aligned_cols=66  Identities=11%  Similarity=-0.019  Sum_probs=35.9

Q ss_pred             CCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          5 IMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         5 ~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      .++..++..|+..+|.++ ....++  .+.+...+.. .+.+|.+....+.        .+..++.|+++++++....
T Consensus        41 ~~~~~~~~~~~~~~~~~~-~~~~~~--~~~H~fth~~~~~~~~~~~~~~~~--------~~~~~~~W~~~eel~~~~~  107 (118)
T cd03431          41 EADGEEALLSALKKALRL-SLEPLG--TVKHTFTHFRLTLHVYLARLEGDL--------LAPDEGRWVPLEELDEYAL  107 (118)
T ss_pred             CcCHHHHHHHHHHHHhCc-ccccce--eEEEecCCeEEEEEEEEEEEeCCC--------cCccccEEccHHHHhhCCC
Confidence            356788889999888765 111111  1222222222 2344444322110        2456789999999987653

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0142|consensus

Probab=83.37  E-value=0.7  Score=34.91  Aligned_cols=70  Identities=13%  Similarity=0.200  Sum_probs=44.1

Q ss_pred             CHHHHHHHHhhhhhCceeeee-------eecceeeeeccC--C-eE--EEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          7 MNIISEAKQVLEETGFDSSHL-------IAEDSYLETTYN--D-QL--TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         7 s~~eaAvREv~EETGl~v~~l-------i~~~~y~~~~~~--~-~~--~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      -...||+|-++=|.|+..+.+       +...+|.....+  | +.  +.+|+...++    ..| ..+|+++++|++.+
T Consensus       104 GVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiDYiL~~~~~~~----~nP-npnEv~e~ryvs~e  178 (225)
T KOG0142|consen  104 GVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEIDYILFLVKDVT----LNP-NPNEVSEIRYVSRE  178 (225)
T ss_pred             HHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCCCCcccceeeEEEEEeccCC----CCC-ChhhhhHhheecHH
Confidence            457899999999999988742       222233322111  2 22  3334444332    233 34899999999999


Q ss_pred             CCCCCch
Q psy13065         75 DLPSSRK   81 (114)
Q Consensus        75 ~lp~~~~   81 (114)
                      +|-.+..
T Consensus       179 elkel~~  185 (225)
T KOG0142|consen  179 ELKELVA  185 (225)
T ss_pred             HHHHHHh
Confidence            9887766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
2qkm_B	266	The Crystal Structure Of Fission Yeast Mrna Decappi		1e-13
2a6t_A	271	Crystal Structure Of S.Pombe Mrna Decapping Enzyme		1e-13
2jvb_A	146	Solution Structure Of Catalytic Domain Of Ydcp2 Len		2e-07

>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping Enzyme Dcp1-Dcp2 Complex Length = 266

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++V EETGFD S  I  + +++ T   Q  RLY+IPG+ +D +F  +TR EI   +W  +
Sbjct: 142 REVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNL 201
Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFI 105
            DLP+ +K       N      N F+M++PF+
Sbjct: 202 MDLPTFKK-------NKPQTMKNKFYMVIPFL 226

>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p Length = 271

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 7/92 (7%)
Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++V EETGFD S  I  + +++ T   Q  RLY+IPG+ +D +F  +TR EI   +W  +
Sbjct: 147 REVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNL 206
Query: 74  GDLPSSRKEIKTVLINGTPVGTNAFFMIMPFI 105
            DLP+ +K       N      N F+M++PF+
Sbjct: 207 MDLPTFKK-------NKPQTMKNKFYMVIPFL 231

>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2 Length = 146

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 14  KQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPI 73
           ++V EE GFD +  I ++ ++E     +  +++LI GV   F F PQ R EI   +WF  
Sbjct: 49  REVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDF 108
Query: 74  GDLPSS--RKEIKTVLING 90
             +  +  +  IK  LIN 
Sbjct: 109 KKISKTMYKSNIKYYLINS 127

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	1e-20
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	6e-20
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	7e-05
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	7e-04

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 79.5 bits (196), Expect = 1e-20
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 11/95 (11%)

Query: 16  VLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD 75
           V EE GFD +  I ++ ++E     +  +++LI GV   F F PQ R EI   +WF    
Sbjct: 51  VKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKK 110

Query: 76  LPSSRKEIKTVLINGTPVGTNAFFMIMPFINSINI 110
           +  +  +               +++I   +  +++
Sbjct: 111 ISKTMYK-----------SNIKYYLINSMMRPLSM 134

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 80.8 bits (199), Expect = 6e-20
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 16  VLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD 75
           V EETGFD S  I  + +++ T   Q  RLY+IPG+ +D +F  +TR EI   +W  + D
Sbjct: 149 VYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMD 208

Query: 76  LPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
           LP+ +K     +        N F+M++PF+  +
Sbjct: 209 LPTFKKNKPQTMK-------NKFYMVIPFLAPL 234

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 39.1 bits (91), Expect = 7e-05
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 16  VLEETGFDS--SHLIAEDSYLETTYNDQLTRLYLIPGV-PIDFKFAPQTRGEIKACQWFP 72
           V EETG  S    +++             + +Y+I  + P  F        E   C+W  
Sbjct: 75  VFEETGIKSEFRSVLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQE-ECLRCEWMD 133

Query: 73  IGDLPS 78
           + DL  
Sbjct: 134 LNDLAK 139

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 36.0 bits (83), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 15  QVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLI-PGVPIDFKFAPQTRGEIKACQWFPI 73
           +VLEETG      +    Y  T  ++  T L     G  + F    +    I    WF I
Sbjct: 55  EVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSI 114

Query: 74  GDLPSSRKEIKTVLI 88
            ++ + +   +T L+
Sbjct: 115 DEIRAKQAMHRTPLV 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.64
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.61
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.38
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.31
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.28
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.25
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.22
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.21
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.2
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.19
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.17
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.17
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.15
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.14
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.14
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.14
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.13
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.13
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.12
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.12
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.11
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.11
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.1
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.1
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.09
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.09
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.09
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.09
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.09
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.09
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.08
3f13_A	163	Putative nudix hydrolase family member; structural	99.08
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.08
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.07
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.07
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.07
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.07
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.07
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.04
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.04
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.03
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.01
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.0
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.0
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	98.99
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	98.98
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	98.98
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	98.98
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	98.97
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	98.96
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	98.96
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	98.96
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	98.93
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	98.93
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	98.92
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	98.91
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	98.9
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	98.9
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	98.88
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	98.85
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	98.82
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	98.82
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	98.8
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	98.78
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	98.72
3e57_A	211	Uncharacterized protein TM1382; structural genomic	98.71
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	98.7
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	98.65
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	98.48
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	98.35
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	98.34
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	98.33
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	98.32
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	98.13
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	97.51
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	95.87
3bho_A	208	Cleavage and polyadenylation specificity factor su	90.49

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.9e-16  Score=107.75  Aligned_cols=99  Identities=23%  Similarity=0.488  Sum_probs=74.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      ++..||+.+||+||++||||+++..+.....|......+...++|++..+.......+...+|+.++.|+++++++.+..
T Consensus        37 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  116 (146)
T 2jvb_A           37 ISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMY  116 (146)
T ss_dssp             CCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEEEETTEEEEEEEECCCCSSSCCCCCCSSSCCCEEEEEHHHHHTGGG
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCchHhcccccccccccCCceEEEEEEEeccccccCCcCCcchhheeEEeEHHHHHhhhc
Confidence            56789999999999999999999865544455443344555666666554433334455568999999999999998664


Q ss_pred             hhhhhhccCCCCCCCceEEEccchHhHHhh
Q psy13065         82 EIKTVLINGTPVGTNAFFMIMPFINSINIA  111 (114)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (114)
                                 ....+++|+.||+..|+=|
T Consensus       117 -----------~~~~~~~l~~~~~~~l~~~  135 (146)
T 2jvb_A          117 -----------KSNIKYYLINSMMRPLSMW  135 (146)
T ss_dssp             -----------CSSCCCHHHHHHHHHHHHH
T ss_pred             -----------ccchhhhhHHHHHHHHHHH
Confidence                       4567899999999998765

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.61  E-value=7.7e-16  Score=117.09  Aligned_cols=103  Identities=32%  Similarity=0.629  Sum_probs=71.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      .+..||+.+||+||++||||+++..+.....|......++.+++|++...+.+..+.+...+|+.+++|+++++++.+..
T Consensus       135 ve~gEs~~eAA~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  214 (271)
T 2a6t_A          135 IDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKK  214 (271)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC-
T ss_pred             CCCCcCHHHHHHHHHHHHhCCCceeeeeeeeeccCCcCCceEEEEEEEEecCcccCCCCCccceeEEEEEEHHHHHHHHh
Confidence            57889999999999999999999876554455543334566777887765543333444568999999999999998765


Q ss_pred             hhhhhhccCCCCCCCceEEEccchHhHHhh
Q psy13065         82 EIKTVLINGTPVGTNAFFMIMPFINSINIA  111 (114)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (114)
                      ..+.       ...++||++.|++.+|.-|
T Consensus       215 ~~~~-------~~~~~~~~~~p~~~~L~~w  237 (271)
T 2a6t_A          215 NKPQ-------TMKNKFYMVIPFLAPLKKW  237 (271)
T ss_dssp             ------------CCGGGTTTGGGHHHHHHH
T ss_pred             cCcc-------ccccchhhhhHHHHHHHHH
Confidence            3221       2478899999999999865

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.38  E-value=3.2e-13  Score=92.00  Aligned_cols=75  Identities=24%  Similarity=0.294  Sum_probs=50.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe---EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ---LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~---~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      ++..||+.+||+||++||||+++..  +++...|.....+..   .+.+|.+....    ..+...+|+.+++||+++++
T Consensus        34 ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~----~~~~~~~E~~~~~W~~~~e~  109 (134)
T 3i7u_A           34 IEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTLKGERIFKTVKYYLMKYKE----GEPRPSWEVKDAKFFPIKEA  109 (134)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----ECCCCCTTSSEEEEEEHHHH
T ss_pred             ecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecCCCceEEEEEEEEEEEEcC----CcCcCChhheEEEEEEHHHH
Confidence            5788999999999999999999985  444333333322221   23445444322    23445679999999999998


Q ss_pred             CCCc
Q psy13065         77 PSSR   80 (114)
Q Consensus        77 p~~~   80 (114)
                      +.+.
T Consensus       110 ~~~l  113 (134)
T 3i7u_A          110 KKLL  113 (134)
T ss_dssp             HHHB
T ss_pred             hhhc
Confidence            7653

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.31  E-value=1.1e-11  Score=84.84  Aligned_cols=79  Identities=16%  Similarity=0.169  Sum_probs=51.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      .+..||+.+||+||++||||+++...-....+  .........+|++....+.........+|+.+++|+++++++....
T Consensus        55 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~  132 (156)
T 3gg6_A           55 MEPGETIVEALQREVKEEAGLHCEPETLLSVE--ERGPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTPLR  132 (156)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE--ESSTTEEEEEEEEEEEEECCCCGGGCSSSCSEEEEEETTSCCSSBS
T ss_pred             ccCCCCHHHHHHHHHHHhhCceeEeeeEEEEE--cCCCCEEEEEEEEEeeCCeeccCCCCCcceeeeEEEcHHHCccccc
Confidence            46789999999999999999999852111111  1223344455555433222221122347999999999999997665


Q ss_pred             h
Q psy13065         82 E   82 (114)
Q Consensus        82 ~   82 (114)
                      .
T Consensus       133 ~  133 (156)
T 3gg6_A          133 A  133 (156)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.28  E-value=1.6e-11  Score=84.85  Aligned_cols=83  Identities=14%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  ++....+.......+. ..+|++....+.  ......+|+.+++|+++++++.
T Consensus        63 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~  140 (157)
T 4dyw_A           63 VDWLEPVERAVCREIEEELGIALERATLLCVVDHIDAANGEHWVAPVYLAHAFSGE--PRVVEPDRHEALGWFALDDLPQ  140 (157)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSCEEESCEEEEEEEEEETTTTEEEEEEEEEESEEESC--CCCSCTTTEEEEEEEETTSCCS
T ss_pred             CCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEeeccCCCcEEEEEEEEEEEcCCC--cccCCCCcEeEEEEECHHHccc
Confidence            4678999999999999999999975  3332222211112222 334444322222  2223457899999999999998


Q ss_pred             Cchhhhhh
Q psy13065         79 SRKEIKTV   86 (114)
Q Consensus        79 ~~~~~~~~   86 (114)
                      ...+..+.
T Consensus       141 ~l~~~~~~  148 (157)
T 4dyw_A          141 PLTHATRI  148 (157)
T ss_dssp             SBCHHHHH
T ss_pred             ccCHHHHH
Confidence            66554443

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.25  E-value=1.2e-11  Score=83.18  Aligned_cols=76  Identities=13%  Similarity=0.174  Sum_probs=49.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeee--ccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC-
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLET--TYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP-   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~--~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp-   77 (114)
                      ++..||+.+||+||++||||+++...-....+...  ....+ ...+|.+.. .+    .+...+|+.+++|+++++++ 
T Consensus        46 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~----~~~~~~e~~~~~W~~~~el~~  120 (139)
T 2yyh_A           46 VEVGERVEEAAAREMREETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDA-QG----EPKAGSDAKKVKVYRLEEIPL  120 (139)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEECCTTSCTTSCEEEEEEEEEE-ES----CCCCCTTEEEEEEECTTSCCG
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCcccceEEEEECCCCcCCCceEEEEEEEEec-CC----ccCCCCCcceEEEEEHHHCCH
Confidence            46789999999999999999998752111111111  11123 344555543 22    23346799999999999999 


Q ss_pred             -CCchh
Q psy13065         78 -SSRKE   82 (114)
Q Consensus        78 -~~~~~   82 (114)
                       .+..+
T Consensus       121 ~~l~~~  126 (139)
T 2yyh_A          121 DKLVFD  126 (139)
T ss_dssp             GGBCTT
T ss_pred             hhcCCC
Confidence             66554

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.22  E-value=1.7e-11  Score=83.54  Aligned_cols=73  Identities=18%  Similarity=0.309  Sum_probs=47.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      ++..||+.+||+||++||||+++..  +++...+...........+|.+.... ..... ...+|+.+++|++++++
T Consensus        38 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~~-~~~~E~~~~~W~~~~el  112 (153)
T 3shd_A           38 LEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQ-ICPTQ-PHDSDIDCCRWVSAEEI  112 (153)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEEECCTTSCCEEEEEEEEECSS-CCCCC-CCSTTCCEEEEECHHHH
T ss_pred             eCCCCCHHHHHHHHHHHHHCcccccCcEEEEEEEecCCCceEEEEEEEEEccc-cCcCC-CCcccceeeEEecHHHh
Confidence            4678999999999999999999985  33322222221122333445554332 22122 23579999999999999

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.21  E-value=1.5e-11  Score=84.71  Aligned_cols=77  Identities=14%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeeccee--eeeccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSY--LETTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y--~~~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      ++..||+.+||+||++||||+++..  ++....+  ....... ....+|++...+..  ..+...+|+.+++||+++++
T Consensus        45 ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~W~~~~ea  122 (155)
T 3u53_A           45 VEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYD--VEIRLSHEHQAYRWLGLEEA  122 (155)
T ss_dssp             CCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEESCTT--CCCCCCTTEEEEEEECHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeeecCCCcceeEEEEEEEEEeccC--CccCCCcceeEEEEeEHHHH
Confidence            5789999999999999999999875  2221111  1111122 23344444433322  23445679999999999987


Q ss_pred             CCCc
Q psy13065         77 PSSR   80 (114)
Q Consensus        77 p~~~   80 (114)
                      +.+.
T Consensus       123 ~~~~  126 (155)
T 3u53_A          123 CQLA  126 (155)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            6543

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.20  E-value=2.6e-11  Score=87.82  Aligned_cols=78  Identities=19%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceee-e--eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYL-E--TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~-~--~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      .+..||+.+||+||++||||+++..  ++....+. .  .....+.+.+|+.+....   ..+...+|+.+++||++++|
T Consensus        99 ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~E~~~~~w~~~~el  175 (205)
T 3q1p_A           99 ADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDKEKHQPSPSATHVYKIFIGCEIIG---GEKKTSIETEEVEFFGENEL  175 (205)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEHHHHSCCCCSSCEEEEEEEEEEEE---ECCCCCTTSCCEEEECTTSC
T ss_pred             cCCCCCHHHHHHHHHHHHHCCccccceEEEEEeccccCCCCCCceEEEEEEEEEecC---CccCCCCcceEEEEEeHHHh
Confidence            4678999999999999999999985  33211110 0  111234444444444322   12334579999999999999


Q ss_pred             CCCchh
Q psy13065         77 PSSRKE   82 (114)
Q Consensus        77 p~~~~~   82 (114)
                      |.+...
T Consensus       176 ~~l~~~  181 (205)
T 3q1p_A          176 PNLSIA  181 (205)
T ss_dssp             CCBCTT
T ss_pred             hhcCCC
Confidence            987643

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.17  E-value=1.1e-10  Score=80.41  Aligned_cols=76  Identities=18%  Similarity=0.300  Sum_probs=48.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeec-----------cee------e-eec-cCC-eEEEEEEEeccCCCCccCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE-----------DSY------L-ETT-YND-QLTRLYLIPGVPIDFKFAP   59 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~-----------~~y------~-~~~-~~~-~~~~lfv~~~~~~~~~~~p   59 (114)
                      ++..||+.+||+||++||||+++..  ++..           ..+      . ..+ ... ....+|.+....+.  ..+
T Consensus        37 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~  114 (159)
T 3f6a_A           37 IEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFE--TSP  114 (159)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCSC--CCC
T ss_pred             ccCCCCHHHHHHHHHHHHhCCCceecccccccccccccccccccccCccccccccCCCCceEEEEEEEEEeCCCC--cCC
Confidence            4678999999999999999999985  2210           010      0 011 111 22344555543322  222


Q ss_pred             CCcCcccceEEEeCCCCCCCc
Q psy13065         60 QTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus        60 ~~~~EI~~i~Wf~id~lp~~~   80 (114)
                       ..+|+.+++|+++++++.+.
T Consensus       115 -~~~E~~~~~W~~~~el~~~~  134 (159)
T 3f6a_A          115 -EIGESKILKWYSKEDLKNAH  134 (159)
T ss_dssp             -CTTSCCCEEEECSSSSTTCS
T ss_pred             -CCCcccceEEeeHHHHhhCc
Confidence             35799999999999999876

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.17  E-value=4.1e-11  Score=81.85  Aligned_cols=78  Identities=15%  Similarity=0.170  Sum_probs=48.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCC--e-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYND--Q-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~--~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      ++..||+.+||+||++||||+++..  ++....+.....+.  + ...+|.+... ..........+|+.+++|++++++
T Consensus        48 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~e~~~~~W~~~~el  126 (154)
T 2pqv_A           48 IQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLL-EDAPLTMQEDEKRQPCEWIDLDKL  126 (154)
T ss_dssp             CBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEES-SCCCSEEEETTEEEEEEEEEGGGG
T ss_pred             cCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecCCCCcceEEEEEEEEEec-CCCCcccCCCCceeeEEEeEHHHH
Confidence            4678999999999999999999984  33222222221121  2 2234444332 221111123568999999999999


Q ss_pred             CCCc
Q psy13065         77 PSSR   80 (114)
Q Consensus        77 p~~~   80 (114)
                      +.+.
T Consensus       127 ~~~~  130 (154)
T 2pqv_A          127 QNIQ  130 (154)
T ss_dssp             GGSC
T ss_pred             hhcC
Confidence            9754

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.15  E-value=7.5e-11  Score=85.39  Aligned_cols=78  Identities=19%  Similarity=0.195  Sum_probs=49.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceee-eecc--CCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYL-ETTY--NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~-~~~~--~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      .+..||+.+||+||++||||+++..  ++....+. ....  ..+.+.+|+.+.+..+   .+...+|+.++.|+++++|
T Consensus       100 ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~E~~~~~w~~~~el  176 (206)
T 3o8s_A          100 CDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGG---EFQPNSETVASGFFSLDDL  176 (206)
T ss_dssp             CCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC-----CEEEEEEEEEEEEE---CCCCCSSCSEEEEECTTSC
T ss_pred             cCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccCCCCCCceEEEEEEEEEecCC---eecCCCCceEEEEEeHHHh
Confidence            4678999999999999999999975  33221110 0111  1233334444433221   2334479999999999999


Q ss_pred             CCCchh
Q psy13065         77 PSSRKE   82 (114)
Q Consensus        77 p~~~~~   82 (114)
                      +.+...
T Consensus       177 ~~l~~~  182 (206)
T 3o8s_A          177 PPLYLG  182 (206)
T ss_dssp             CCBCTT
T ss_pred             hhccCC
Confidence            988753

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.14  E-value=7.1e-11  Score=82.07  Aligned_cols=77  Identities=17%  Similarity=0.182  Sum_probs=45.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccC--cCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFA--PQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~--p~~~~EI~~i~Wf~id~l   76 (114)
                      ++..||+.+||+||++||||+++..  ++.  .+.......+ ...+|.+....+.....  ..+.+|+.++.|++++++
T Consensus        55 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el  132 (171)
T 3id9_A           55 VENGETLEEAMIREMREETGLEVKIKKLLY--VCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINEL  132 (171)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCEEEEEEEE--EEEETTSSSCEEEEEEEEEEC-------------CCCCCEEEEETGGG
T ss_pred             CCCCCCHHHHHHHHHHHHHCCccccceEEE--EEcccCCCCcEEEEEEEEEEcCCcccCCccCCCcCeeeeEEEEeHHHH
Confidence            4678999999999999999999974  222  1111111222 33334443332221110  113478999999999999


Q ss_pred             CCCc
Q psy13065         77 PSSR   80 (114)
Q Consensus        77 p~~~   80 (114)
                      +.+.
T Consensus       133 ~~~~  136 (171)
T 3id9_A          133 SYYG  136 (171)
T ss_dssp             GGGT
T ss_pred             hhCC
Confidence            8753

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.14  E-value=3.7e-11  Score=82.01  Aligned_cols=79  Identities=19%  Similarity=0.182  Sum_probs=49.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccC-Ce-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYN-DQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~-~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++........+.....+ .+ ...+|.+....+ ....+...+|+.++.|+++++++.+
T Consensus        52 ve~gE~~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~~  130 (159)
T 1sjy_A           52 VEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPG-QTLAPAFTDEIAEASFVSREDFAQL  130 (159)
T ss_dssp             CCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTSCEEEEEEEEEEECSS-CCCCCCCCSSEEEEEEECHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHCccceeeEEEEEEecccCCCceEEEEEEEEEccCC-CccccCCCCceeEEEEecHHHHHHh
Confidence            46789999999999999999999852111112111223 22 344455443222 1122224579999999999998866


Q ss_pred             ch
Q psy13065         80 RK   81 (114)
Q Consensus        80 ~~   81 (114)
                      ..
T Consensus       131 ~~  132 (159)
T 1sjy_A          131 YA  132 (159)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.14  E-value=6.3e-11  Score=80.98  Aligned_cols=73  Identities=12%  Similarity=0.040  Sum_probs=49.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  +++.  +......... ..+|.+....+    .+...+|+.+++|+++++++.
T Consensus        45 ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~~  118 (153)
T 3grn_A           45 VNPDESLKEGVAREVWEETGITMVPGDIAGQ--VNFELTEKKVIAIVFDGGYVVA----DVKLSYEHIEYSWVSLEKILG  118 (153)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCCCCCSEEEE--EEEECSSCEEEEEEEEEEECCC----CCCCCTTEEEEEEECHHHHTT
T ss_pred             cCCCCCHHHHHHhhhhhhhCcEeecceEEEE--EEEecCCceEEEEEEEEEecCC----cEecCCCcceEEEEEHHHhhh
Confidence            4678999999999999999999985  3322  2122223333 44455443332    233357999999999999887


Q ss_pred             Cc
Q psy13065         79 SR   80 (114)
Q Consensus        79 ~~   80 (114)
                      +.
T Consensus       119 ~~  120 (153)
T 3grn_A          119 ME  120 (153)
T ss_dssp             CS
T ss_pred             cc
Confidence            65

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.13  E-value=5.4e-11  Score=78.32  Aligned_cols=74  Identities=14%  Similarity=0.132  Sum_probs=48.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++..  +++...|... .....+.+|.+....+.    +...+|+.+++|+++++++..
T Consensus        33 ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~e~~~~~w~~~~el~~~  107 (126)
T 1vcd_A           33 PEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNP-KGVEREVHWFLMRGEGA----PRLEEGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECT-TSCEEEEEEEEEEEESC----CCCCTTCCEEEEECHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEEEecC-CceEEEEEEEEEEcCCC----CCCCcceeeeEEcCHHHHHHh
Confidence            4678999999999999999999985  3332222221 11233455555433221    334578999999999998764


Q ss_pred             c
Q psy13065         80 R   80 (114)
Q Consensus        80 ~   80 (114)
                      .
T Consensus       108 ~  108 (126)
T 1vcd_A          108 L  108 (126)
T ss_dssp             B
T ss_pred             h
Confidence            3

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.13  E-value=9.7e-11  Score=78.93  Aligned_cols=74  Identities=15%  Similarity=0.034  Sum_probs=49.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeeccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++...  ++.  +....... ..+.+|.+....+    .+. .+|+.+++|+++++++.
T Consensus        43 ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~--~~~~~~~~~~~~~~f~~~~~~~----~~~-~~E~~~~~W~~~~el~~  115 (140)
T 3gwy_A           43 VEEGESLQEALQREIMEEMDYVIEVGEKLLT--VHHTYPDFEITMHAFLCHPVGQ----RYV-LKEHIAAQWLSTREMAI  115 (140)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE--EECCCSSCCEEEEEEEEEECCS----CCC-CCSSCEEEEECHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHhhCcEEEeceEEEE--EEEEeCCceEEEEEEEEEecCC----ccc-ccccceeEeccHHHHhh
Confidence            46789999999999999999999852  322  11112222 3345555543322    222 36899999999999887


Q ss_pred             Cchh
Q psy13065         79 SRKE   82 (114)
Q Consensus        79 ~~~~   82 (114)
                      +...
T Consensus       116 ~~~~  119 (140)
T 3gwy_A          116 LDWA  119 (140)
T ss_dssp             SCBC
T ss_pred             CCCC
Confidence            6543

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.12  E-value=1.4e-11  Score=84.15  Aligned_cols=78  Identities=15%  Similarity=0.124  Sum_probs=47.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeee-ccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLET-TYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~-~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++||||+++..+.....+... ......+++|++.....+ .. ....+|+.++.|+++++++.+.
T Consensus        41 ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~-~~-~~~~~E~~~~~w~~~~el~~~~  118 (145)
T 2w4e_A           41 VEKGEDLGAAAARELLEEVGGAASEWVPLPGFYPQPSISGVVFYPLLALGVTLG-AA-QLEDTETIERVVLPLAEVYRML  118 (145)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCEECSEEEECCCBBSCTTTCCCEEEEEEEEEEEEC----------CEEEEEEEHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhhCCccCeEEEEecCcCCCCccCceEEEEEEEecccC-CC-CCCCCCeEEEEEEeHHHHHHHH
Confidence            47789999999999999999998753221122111 112344566666533311 11 1235789999999999998765


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       119 ~  119 (145)
T 2w4e_A          119 E  119 (145)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.12  E-value=1.6e-11  Score=88.16  Aligned_cols=77  Identities=19%  Similarity=0.295  Sum_probs=45.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecce-eeeeccCCeEEEEEEEeccC-CCCccCcCCcCcccceEEEeCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDS-YLETTYNDQLTRLYLIPGVP-IDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~-y~~~~~~~~~~~lfv~~~~~-~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      ++..||+.+||+||++||||+++..  ++.... +.... ......+|+++.+. ......+ ..+|+.++.|+++++++
T Consensus        61 ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~W~~~~el~  138 (199)
T 3h95_A           61 SEPEEDIGDTAVREVFEETGIKSEFRSVLSIRQQHTNPG-AFGKSDMYIICRLKPYSFTINF-CQEECLRCEWMDLNDLA  138 (199)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEECC----------CEEEEEEEEESCCCCCC-CTTTEEEEEEEEHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHhCCccccceEEEEEeeecCCC-CceeEEEEEEEEEcCCCcccCC-CccceeeeEEEeHHHHh
Confidence            4678999999999999999999884  332111 11111 11222233333322 2222222 35799999999999998


Q ss_pred             CCc
Q psy13065         78 SSR   80 (114)
Q Consensus        78 ~~~   80 (114)
                      .+.
T Consensus       139 ~~~  141 (199)
T 3h95_A          139 KTE  141 (199)
T ss_dssp             HCS
T ss_pred             hhh
Confidence            643

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.11  E-value=9.1e-11  Score=81.07  Aligned_cols=76  Identities=12%  Similarity=0.037  Sum_probs=46.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeec---ce-eeeeccCCe----EE--EEEEEeccCCCCccCcCCcCcccceE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE---DS-YLETTYNDQ----LT--RLYLIPGVPIDFKFAPQTRGEIKACQ   69 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~---~~-y~~~~~~~~----~~--~lfv~~~~~~~~~~~p~~~~EI~~i~   69 (114)
                      ++..||+.+||+||++||||+++..  ++..   .. +...+..+.    ..  .+|.+....    ..+...+|+.+++
T Consensus        64 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~E~~~~~  139 (165)
T 3oga_A           64 VEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSAN----RDICINDEFQDYA  139 (165)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEEEEEEESC----CCCCCCTTEEEEE
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCCCCceeEEEEEEEEEeeccC----CCccCCchheeeE
Confidence            4678999999999999999999874  2211   11 111222221    11  222232221    1223347999999


Q ss_pred             EEeCCCCCCCch
Q psy13065         70 WFPIGDLPSSRK   81 (114)
Q Consensus        70 Wf~id~lp~~~~   81 (114)
                      |+++++++.+..
T Consensus       140 W~~~~el~~~~~  151 (165)
T 3oga_A          140 WVKPEELALYDL  151 (165)
T ss_dssp             EECGGGGGGSCB
T ss_pred             EccHHHHhhCCC
Confidence            999999998643

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.11  E-value=2e-10  Score=79.61  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=48.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  ++....+......... ..+|.+....+    .+. .+|..+++|+++++++.
T Consensus        46 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~e~~~~~W~~~~el~~  120 (161)
T 3exq_A           46 VEVGEPCATAAIREVFEETGLRLSGVTFCGTCEWFDDDRQHRKLGLLYRASNFTG----TLK-ASAEGQLSWLPITALTR  120 (161)
T ss_dssp             CCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEEECSSCSSEEEEEEEEECCEES----CCC-GGGTTTEEEECGGGCCT
T ss_pred             cCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEecccCCCCeEEEEEEEEEeccCC----ccC-CCccceEEEeeHHHhhh
Confidence            4678999999999999999999985  3332222221122232 33344432222    232 45788999999999998


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       121 ~~~  123 (161)
T 3exq_A          121 ENS  123 (161)
T ss_dssp             TTB
T ss_pred             Ccc
Confidence            643

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.10  E-value=5.6e-11  Score=80.64  Aligned_cols=76  Identities=20%  Similarity=0.211  Sum_probs=47.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  +++...|......... ..+|.+...... . .....+|+.+++|+++++++.
T Consensus        42 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~-~~~~~~e~~~~~W~~~~el~~  119 (153)
T 2b0v_A           42 LEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFD-P-DRKLDTGIVRAAWFSIDEIRA  119 (153)
T ss_dssp             CCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEC-T-TSCCCTTEEEEEEEEHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHhhCcEeccceEEEEEEEeCCCCCcEEEEEEEEEEeCCCC-C-CCCCCCCeeeEEEecHHHHhh
Confidence            4678999999999999999999985  3332222222111122 233444322211 1 112357899999999999987


Q ss_pred             C
Q psy13065         79 S   79 (114)
Q Consensus        79 ~   79 (114)
                      +
T Consensus       120 ~  120 (153)
T 2b0v_A          120 K  120 (153)
T ss_dssp             T
T ss_pred             h
Confidence            5

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.10  E-value=8.6e-12  Score=88.58  Aligned_cols=77  Identities=12%  Similarity=0.050  Sum_probs=46.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..+  ++...+......+. ...+|++..... ....+...+|+.+++|+++++++.
T Consensus        76 ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~W~~~~el~~  154 (187)
T 3i9x_A           76 VDENESAEQAAERELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPE-ALEKRAAGDDAAEIGLFPMTEALE  154 (187)
T ss_dssp             CCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEECCTTSSTTSSEEEEEEEEECCHH-HHHHHHHSTTTTTEEEEEHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEcCCccCCCCCEEEEEEEEEEcCc-ccCCcCCCCceeEEEEEeHHHccc
Confidence            46789999999999999999998752  32111111111222 233344322111 111122357999999999999986


Q ss_pred             C
Q psy13065         79 S   79 (114)
Q Consensus        79 ~   79 (114)
                      +
T Consensus       155 ~  155 (187)
T 3i9x_A          155 L  155 (187)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.09  E-value=7.4e-11  Score=87.00  Aligned_cols=79  Identities=11%  Similarity=0.132  Sum_probs=50.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeee--eccCCeEEE-EEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE--TTYNDQLTR-LYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~--~~~~~~~~~-lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..+-....|..  ...+++.+. .|++. +..+.  .+...+|+.+++|+++++++.
T Consensus        51 ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~~~~~r~~~~~~v~~~y~a~-~~~~~--~~~~~~e~~~~~W~~~~el~~  127 (226)
T 2fb1_A           51 VQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYAL-ININE--YDRELVQKHNAYWVNINELPA  127 (226)
T ss_dssp             CCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSSSSCEEEEEEEEE-CCTTS--SCHHHHHHTTEEEEETTSCCC
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCCCceEEEEEeCCCCcCCCceEEEEEEEEE-ecCcc--cccCCccccceEEEEHHHhhh
Confidence            4778999999999999999999874211111111  122334333 44443 32221  112346899999999999998


Q ss_pred             Cchhh
Q psy13065         79 SRKEI   83 (114)
Q Consensus        79 ~~~~~   83 (114)
                      +..+.
T Consensus       128 l~~dh  132 (226)
T 2fb1_A          128 LIFDH  132 (226)
T ss_dssp             BSTTH
T ss_pred             ccCCH
Confidence            87653

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.09  E-value=1.1e-10  Score=77.95  Aligned_cols=76  Identities=9%  Similarity=0.069  Sum_probs=47.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--ee-e-cceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LI-A-EDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li-~-~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      .+..||+.+||+||++||||+++..  ++ . ...+.+.....+ .+.+|.+... ...  .....+|+.+++|++++++
T Consensus        39 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~--~~~~~~e~~~~~W~~~~el  115 (138)
T 1ktg_A           39 VDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLN-NPD--DVQLSHEHQNWKWCELEDA  115 (138)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEEC-SCC--CCCCCTTEEEEEEECHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCccceEEeccccceEEEEeCCCceEEEEEEEEec-CCc--ccCCCchhcEeEeccHHHH
Confidence            4678999999999999999996543  22 1 111111122222 3444555432 211  2234579999999999999


Q ss_pred             CCCc
Q psy13065         77 PSSR   80 (114)
Q Consensus        77 p~~~   80 (114)
                      +.+.
T Consensus       116 ~~~~  119 (138)
T 1ktg_A          116 IKIA  119 (138)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8754

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.09  E-value=1.5e-10  Score=82.67  Aligned_cols=75  Identities=12%  Similarity=0.011  Sum_probs=47.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCC--e--EEEEEEEeccCCCCccCcCCcCcccceEEEeCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYND--Q--LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGD   75 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~--~--~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~   75 (114)
                      ++..||+.+||+||++||||+++..  +++...+.......  .  .+.+|.+....+    .+....|..+++|+++++
T Consensus        35 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~~~~~----~~~~~~e~~~~~W~~~~e  110 (188)
T 3fk9_A           35 MEAGESILETVKREYWEETGITVKNPELKGIFSMVIFDEGKIVSEWMLFTFKATEHEG----EMLKQSPEGKLEWKKKDE  110 (188)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEEEETTEEEEEEEEEEEEESCEES----CCCSEETTEEEEEEEGGG
T ss_pred             ccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEecCCCcceEEEEEEEEEEECCCC----CCcCCCCCEeEEEEEHHH
Confidence            4678999999999999999999985  33322232222221  1  234444443222    223334557999999999


Q ss_pred             CCCCc
Q psy13065         76 LPSSR   80 (114)
Q Consensus        76 lp~~~   80 (114)
                      ++.+.
T Consensus       111 l~~~~  115 (188)
T 3fk9_A          111 VLELP  115 (188)
T ss_dssp             GGGSC
T ss_pred             hhhCC
Confidence            98643

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.09  E-value=4.7e-11  Score=81.69  Aligned_cols=81  Identities=21%  Similarity=0.229  Sum_probs=49.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeec----ceeeee-------------ccCCeEEEEEEEeccCCCCccCc----C
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAE----DSYLET-------------TYNDQLTRLYLIPGVPIDFKFAP----Q   60 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~----~~y~~~-------------~~~~~~~~lfv~~~~~~~~~~~p----~   60 (114)
                      ++..||+.+||+||++||||+++..+...    ..|...             ...++...+|++...........    .
T Consensus        47 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  126 (165)
T 1f3y_A           47 IDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGS  126 (165)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSCCBCCCCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCCCCCSS
T ss_pred             cCCCCCHHHHHHHHHHHhhCCChhhhhcccccceeeecCccccccccccccccccCceEEEEEEEecCCcccccccCCCC
Confidence            46789999999999999999998654321    111110             00122445566543222111111    1


Q ss_pred             CcCcccceEEEeCCCCCCCchh
Q psy13065         61 TRGEIKACQWFPIGDLPSSRKE   82 (114)
Q Consensus        61 ~~~EI~~i~Wf~id~lp~~~~~   82 (114)
                      ..+|+.+++|+++++++.+..+
T Consensus       127 ~~~E~~~~~W~~~~el~~~~~~  148 (165)
T 1f3y_A          127 EKPEFGEWSWVTPEQLIDLTVE  148 (165)
T ss_dssp             SCCSEEEEEEECHHHHHHHBCG
T ss_pred             CCChhheeEEecHHHHHHHhhh
Confidence            3569999999999999876543

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.09  E-value=5e-10  Score=79.70  Aligned_cols=74  Identities=19%  Similarity=0.101  Sum_probs=49.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC--
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP--   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp--   77 (114)
                      ++..||+.+||+||++||||+++..  ++..  +... .......+|.+....+    .+...+|+.+++|+++++++  
T Consensus        74 ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~--~~~~-~~~~~~~~f~~~~~~~----~~~~~~E~~~~~W~~~~el~~~  146 (189)
T 3cng_A           74 MENNETLVQGAARETLEEANARVEIRELYAV--YSLP-HISQVYMLFRAKLLDL----DFFPGIESLEVRLFGEQEIPWN  146 (189)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE--EEEG-GGTEEEEEEEEEECCS----CCCCCTTEEEEEEECTTTCCGG
T ss_pred             ccCCCCHHHHHHHHHHHHHCCccccceeEEE--EecC-CCcEEEEEEEEEeCCC----ccCCCccceeEEEECHHHcCcc
Confidence            4678999999999999999999874  2221  1111 1234455566554322    22335799999999999999  


Q ss_pred             CCchh
Q psy13065         78 SSRKE   82 (114)
Q Consensus        78 ~~~~~   82 (114)
                      .+..+
T Consensus       147 ~l~~~  151 (189)
T 3cng_A          147 DIAFR  151 (189)
T ss_dssp             GBSCH
T ss_pred             cccCh
Confidence            55443

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.09  E-value=1.2e-10  Score=79.39  Aligned_cols=74  Identities=16%  Similarity=0.200  Sum_probs=47.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  ++....+.. ..+.+ ...+|.+....+    .+. ..|+.+++|+++++++.
T Consensus        45 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~-~~e~~~~~W~~~~el~~  118 (155)
T 2b06_A           45 VENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPL-DTGGRYIVICYKATEFSG----TLQ-SSEEGEVSWVQKDQIPN  118 (155)
T ss_dssp             CCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEEC-TTSCEEEEEEEEECEEEE----CCC-CBTTBEEEEEEGGGGGG
T ss_pred             cCCCCCHHHHHHHHHHHHhCccccCCcEEEEEeecc-CCCceEEEEEEEEEecCC----CCC-CCcceeeEEeeHHHhhh
Confidence            4678999999999999999999985  332222221 11222 234444432211    222 25789999999999997


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       119 ~~~  121 (155)
T 2b06_A          119 LNL  121 (155)
T ss_dssp             SCB
T ss_pred             CCC
Confidence            654

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.08  E-value=4.1e-10  Score=85.56  Aligned_cols=76  Identities=20%  Similarity=0.178  Sum_probs=50.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      +|..||+++||+||++||||+++..+-....+.... ....+..|++....+.  ..+ ..+|+.+++||++++++.+..
T Consensus       173 vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~~~~-~~~~~~~f~a~~~~~~--~~~-~~~E~~~~~W~~~~el~~l~~  248 (269)
T 1vk6_A          173 VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPF-PQSLMTAFMAEYDSGD--IVI-DPKELLEANWYRYDDLPLLPP  248 (269)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEEEEEEECC--CCC-CTTTEEEEEEEETTSCCSCCC
T ss_pred             CCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEecCC-CCEEEEEEEEEECCCC--cCC-CCcceEEEEEEEHHHhhhccc
Confidence            577899999999999999999998632111111111 2234555655433222  222 357999999999999997654

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.08  E-value=4.7e-10  Score=78.76  Aligned_cols=73  Identities=15%  Similarity=0.093  Sum_probs=47.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      ++..||+.+||+||++||||+++...-....|  .+ ......+|++. +++    .+...+|+.+++||+.+.++....
T Consensus        46 ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~--~~-~~~~~~~f~~~-~~~----~~~~~~E~~~~~W~~~~~~~~~l~  117 (163)
T 3f13_A           46 ANRGELRSQALIREIREETGLRINSMLYLFDH--IT-PFNAHKVYLCI-AQG----QPKPQNEIERIALVSSPDTDMDLF  117 (163)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCCCEEEEEEEE--EC-SSEEEEEEEEE-C-C----CCCCCTTCCEEEEESSTTCSSCBC
T ss_pred             CCCCCCHHHHHHHHHHHHHCcccceeEEEEEE--ec-CCeEEEEEEEE-ECC----cCccCCCceEEEEECcccccCCCC
Confidence            46789999999999999999999753211112  11 22444555553 332    344456999999999766664443


Q ss_pred             h
Q psy13065         82 E   82 (114)
Q Consensus        82 ~   82 (114)
                      +
T Consensus       118 ~  118 (163)
T 3f13_A          118 V  118 (163)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.08  E-value=1.1e-10  Score=81.67  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++||||+++..+.....+.......+ ...+|++. ..+.  ..+ ..+|+.++.|+++++++.+.
T Consensus        75 ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~-~~~~--~~~-~~~E~~~~~W~~~~el~~~~  150 (180)
T 2fkb_A           75 VQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCV-SHGP--FAL-QEDEVSEVCWLTPEEITARC  150 (180)
T ss_dssp             CBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEEEEEEEE-CCCC--CCC-CTTTEEEEEEECHHHHHTTG
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCccceEEEEEEEecCCCceEEEEEEEEe-cCCC--cCC-ChhHhheEEEecHHHHHHHH
Confidence            4678999999999999999998875321122322222222 34455554 3222  122 35799999999999999874

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.07  E-value=4.4e-10  Score=77.11  Aligned_cols=75  Identities=19%  Similarity=0.102  Sum_probs=48.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  +.....+.......+. +.+|.+....+    .+ ..+|+.++.|+++++++.
T Consensus        65 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~e~~~~~W~~~~el~~  139 (158)
T 3hhj_A           65 VEQGETPEASLIRELEEELGVHVQADNLFPLTFASHGYETFHLLMPLYFCSHYKG----VA-QGREGQNLKWIFINDLDK  139 (158)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSCEEEEEEEEESCCBS----CC-CCTTSCEEEEEEGGGGGG
T ss_pred             ecCCCCHHHHHHHHHHHHhCcEeecceEEEEEEEeeccCCcEEEEEEEEEEECCC----cc-CCccccceEEEcHHHHhh
Confidence            4678999999999999999999985  2222222223333333 33444433222    22 246889999999999987


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       140 ~~~  142 (158)
T 3hhj_A          140 YPM  142 (158)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            543

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.07  E-value=2.3e-10  Score=82.59  Aligned_cols=78  Identities=10%  Similarity=0.115  Sum_probs=51.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeee-ccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLET-TYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~-~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++||||+++..+.....+... ......+.+|++...... .. ....+|..++.|+++++++.+.
T Consensus        84 ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~a~~~~~~-~~-~~~~~E~~~~~w~~~~el~~~~  161 (198)
T 1vhz_A           84 IDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPE-SL-EGDEPEPLPQVRWPLAHMMDLL  161 (198)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEEEEEEEEEC-CC-CCCCSSCCCEEEEEGGGGGGGG
T ss_pred             CCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCCccCcEEEEEEEEeCCcc-cC-CCCCCceEEEEEEEHHHHHHHH
Confidence            46789999999999999999999853211122111 112345666766543321 11 2235688999999999999876


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       162 ~  162 (198)
T 1vhz_A          162 E  162 (198)
T ss_dssp             G
T ss_pred             H
Confidence            5

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.07  E-value=3.4e-11  Score=81.85  Aligned_cols=77  Identities=10%  Similarity=0.011  Sum_probs=47.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee---ee-ccee---eeeccCC-e-EEEEEEEeccCCCCccCcCCcCcccceEEEe
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL---IA-EDSY---LETTYND-Q-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFP   72 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l---i~-~~~y---~~~~~~~-~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~   72 (114)
                      ++..||+.+||+||++||||+++...   +. ...+   ...+.+. . ..++|.+......  ..+...+|+.+++|++
T Consensus        40 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~W~~  117 (149)
T 3son_A           40 GEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCS--YQVTLSLEHSELRWVS  117 (149)
T ss_dssp             CCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEEGGGTCSSSCSEEEEEEEEEECTTTG--GGCCCCTTEEEEEEEC
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeecccceeeccCCceEeEEEEEEEEcCCCC--CcccCCCceeeEEEeC
Confidence            46789999999999999999998752   11 0000   1111222 2 2344555433111  2233357999999999


Q ss_pred             CCCCCCCc
Q psy13065         73 IGDLPSSR   80 (114)
Q Consensus        73 id~lp~~~   80 (114)
                      +++++.+.
T Consensus       118 ~~el~~~~  125 (149)
T 3son_A          118 YESAIQLL  125 (149)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99988653

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.07  E-value=4.5e-10  Score=75.43  Aligned_cols=75  Identities=15%  Similarity=0.042  Sum_probs=48.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++...  .....+.......+. +.+|.+....+    .+. .+|+.+++|+++++++.
T Consensus        44 ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~e~~~~~W~~~~el~~  118 (144)
T 3r03_A           44 LEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSYDTFHLLMPLYACRSWRG----RAT-AREGQTLAWVRAERLRE  118 (144)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEEEEEEECSSSEEEEEEEEECCCBS----CCC-CCSSCEEEEECGGGGGG
T ss_pred             ecCCCCHHHHHHHHHHHHhCceeeccceEEEEeeeccCCCeEEEEEEEEEEecCC----ccC-CCCcceEEEEeHHHhcc
Confidence            46789999999999999999999852  322222222223333 34444443222    222 46889999999999887


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       119 ~~~  121 (144)
T 3r03_A          119 YPM  121 (144)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            554

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.04  E-value=7.7e-10  Score=78.05  Aligned_cols=74  Identities=11%  Similarity=0.163  Sum_probs=47.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  +++...+........ ...+|.+....+    .+. ..|..+++|+++++++.
T Consensus        59 ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~-~~e~~~~~W~~~~el~~  133 (176)
T 3q93_A           59 VQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVGEPELMDVHVFCTDSIQG----TPV-ESDEMRPCWFQLDQIPF  133 (176)
T ss_dssp             CCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEEEETTCSCEEEEEEEEESCEES----CCC-CCSSEEEEEEETTCCCG
T ss_pred             CCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEEEcCCCCcEEEEEEEEEECCCC----CcC-CCcceeeEEeeHHHccc
Confidence            4678999999999999999999975  333222222221223 234455543322    232 34667889999999996


Q ss_pred             Cc
Q psy13065         79 SR   80 (114)
Q Consensus        79 ~~   80 (114)
                      +.
T Consensus       134 ~~  135 (176)
T 3q93_A          134 KD  135 (176)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.04  E-value=4.4e-10  Score=75.91  Aligned_cols=73  Identities=16%  Similarity=0.098  Sum_probs=47.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  +++.  +.+...+.. .+.+|.+....+    .+ ..+|+.++.|+++++++.
T Consensus        57 ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~-~~~e~~~~~W~~~~el~~  129 (153)
T 3ees_A           57 IENGETPEEALARELNEELGIEAEVGELKLA--CTHSYGDVGILILFYEILYWKG----EP-RAKHHMMLEWIHPEELKH  129 (153)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSCEEECCCEEEE--EEEEETTEEEEEEEEEECEEES----CC-CCSSSSEEEEECGGGGGG
T ss_pred             eCCCCCHHHHHHHHHHHHHCCccccCceEEE--EEEecCCCeEEEEEEEEEECCC----Cc-CCCccceEEEecHHHhhh
Confidence            4678999999999999999999985  3332  222222222 233444432222    12 246889999999999987


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       130 ~~~  132 (153)
T 3ees_A          130 RNI  132 (153)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            654

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.03  E-value=7.7e-11  Score=82.91  Aligned_cols=79  Identities=14%  Similarity=0.169  Sum_probs=51.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeee-ccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLET-TYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~-~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++||||+++..+.....+... ......+.+|++......... ....+|+.++.|+++++++.+.
T Consensus        77 ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~E~~~~~W~~~~el~~~~  155 (182)
T 2yvp_A           77 VDEGETPEAAARRELREEVGAEAETLIPLPSFHPQPSFTAVVFHPFLALKARVVTPP-TLEEGELLESLELPLTEVYALL  155 (182)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSCTTTBCCEEEEEEECSCEECSCC-CCCTTCCEEEEEEEHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCCCCccccEEEEEEEeccccCCCC-CCCCCceEEEEEEEHHHHHHHH
Confidence            46789999999999999999998753211122111 112234566666544311111 1245799999999999998765


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       156 ~  156 (182)
T 2yvp_A          156 A  156 (182)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.01  E-value=4.2e-10  Score=73.98  Aligned_cols=73  Identities=15%  Similarity=0.213  Sum_probs=47.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      .+..||+.+||+||++||||+++...  +....+  ...+... ..+|.+....+    .+ ..+|+.++.|+++++++.
T Consensus        40 ~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~-~~~e~~~~~W~~~~el~~  112 (129)
T 1mut_A           40 IEMGETPEQAVVRELQEEVGITPQHFSLFEKLEY--EFPDRHITLWFWLVERWEG----EP-WGKEGQPGEWMSLVGLNA  112 (129)
T ss_dssp             SSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCBC--CCSSCEEECCCEEEEECSS----CC-CCCSSCCCEEEESSSCCT
T ss_pred             cCCCCCHHHHHHHHHHHHhCCccccceEEEEEEE--ecCCceEEEEEEEEEccCC----cc-CCcccceeEEeCHHHccc
Confidence            46789999999999999999998752  222111  1122222 33444443221    22 246889999999999987


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       113 ~~~  115 (129)
T 1mut_A          113 DDF  115 (129)
T ss_dssp             TTS
T ss_pred             ccC
Confidence            643

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.00  E-value=9.4e-11  Score=83.34  Aligned_cols=78  Identities=12%  Similarity=-0.040  Sum_probs=50.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC-CC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL-PS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l-p~   78 (114)
                      .+..||+.+||+||++||||+++..  +++...+... ..+..+.+|++.. ..+........+|+.++.|++++++ +.
T Consensus        73 ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~-~~~~~~~~f~~~~-~~~~~~~~~~~~E~~~~~W~~~~el~~~  150 (194)
T 1nqz_A           73 LDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFT-PVGFHVTPVLGRI-APEALDTLRVTPEVAQIITPTLAELRAV  150 (194)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEE-TTTEEEEEEEEEE-CGGGGGGCCCCTTEEEEECCBHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCccceEEEEEccCccC-CCCeEEEEEEEEe-cCCccccCCCccceeEEEEEEHHHhccC
Confidence            4678999999999999999999975  3332222222 2345556666543 2221101234579999999999999 76


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      ...
T Consensus       151 ~~~  153 (194)
T 1nqz_A          151 PLV  153 (194)
T ss_dssp             CCE
T ss_pred             CCc
Confidence            554

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.00  E-value=1.8e-10  Score=79.97  Aligned_cols=75  Identities=11%  Similarity=0.038  Sum_probs=49.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceee-eeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYL-ETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~-~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      .+..||+.+||+||++||||+++..  +.....+. ..........+|.+.. .+.  ..+ ..+|+.+++|+++++++.
T Consensus        72 ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~-~~~--~~~-~~~E~~~~~W~~~~el~~  147 (171)
T 1q27_A           72 VQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRS-DAT--PIF-NPNDISGGEWLTPEHLLA  147 (171)
T ss_dssp             CSSSSCHHHHHHHHHHHHHSCTTSSSCEEEEEEECSSSSCCSSEEEEEEEEC-CCC--CCS-CTTTCSCCEEECHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeccCCCCccEEEEEEEEE-CCc--ccc-CchhhheEEEecHHHHHH
Confidence            4678999999999999999999875  22222222 2222223555565543 222  222 347899999999999985


Q ss_pred             Cc
Q psy13065         79 SR   80 (114)
Q Consensus        79 ~~   80 (114)
                      +.
T Consensus       148 ~~  149 (171)
T 1q27_A          148 RI  149 (171)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=98.99  E-value=9.5e-10  Score=76.75  Aligned_cols=78  Identities=13%  Similarity=0.136  Sum_probs=48.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeec-ce-eeeecc------------CCeEEEEEEEeccCCCCccC--cCCcC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE-DS-YLETTY------------NDQLTRLYLIPGVPIDFKFA--PQTRG   63 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~-~~-y~~~~~------------~~~~~~lfv~~~~~~~~~~~--p~~~~   63 (114)
                      ++..||+.+||+||++||||+++..  +++. .. +.+...            .++...+|++..........  +...+
T Consensus        40 ~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~  119 (164)
T 2kdv_A           40 INPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTP  119 (164)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSC
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCccceEEEEEecceeEEecCcceeeeccCcccccceeEEEEEEecCCccccccCCCCCc
Confidence            4678999999999999999999874  3332 11 111111            11245556654333222222  22346


Q ss_pred             cccceEEEeCCCCCCC
Q psy13065         64 EIKACQWFPIGDLPSS   79 (114)
Q Consensus        64 EI~~i~Wf~id~lp~~   79 (114)
                      |+.+++|+++++++..
T Consensus       120 E~~~~~W~~~~e~~~~  135 (164)
T 2kdv_A          120 EFDGWRWVSYWYPVRQ  135 (164)
T ss_dssp             SEEEEEEEETTTGGGG
T ss_pred             hhceEEEecHHHhhhh
Confidence            9999999999998654

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=98.98  E-value=5.1e-10  Score=74.68  Aligned_cols=73  Identities=12%  Similarity=0.088  Sum_probs=46.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  +++.  +.+.....+ .+.+|.+....+    .+ ..+|+.++.|+++++++.
T Consensus        44 ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~-~~~e~~~~~W~~~~el~~  116 (140)
T 2rrk_A           44 VEPDESQRQALVRELREELGIEATVGEYVAS--HQREVSGRIIHLHAWHVPDFHG----TL-QAHEHQALVWCSPEEALQ  116 (140)
T ss_dssp             CCTTSCHHHHHHHHHHHHSCEEEECCEEEEE--EEEEETTEEEEEEEEEESEEEE----CC-CCSSCSCEEEECHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHCCeeecccEEEE--EEEecCCcEEEEEEEEEEeeCC----Cc-CCCccceeEEeCHHHHhh
Confidence            4678999999999999999999975  2322  111122222 234444432211    12 246889999999999887


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       117 ~~~  119 (140)
T 2rrk_A          117 YPL  119 (140)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            643

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=98.98  E-value=3.7e-10  Score=80.86  Aligned_cols=79  Identities=11%  Similarity=0.043  Sum_probs=48.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCCcc-CcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKF-APQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~-~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      .+ .||+.+||+||++||||+++..+.....+.. .......+++|++......... .....+|+.++.|+++++++.+
T Consensus        88 ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~  166 (191)
T 3o6z_A           88 LD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEAIEVLELPFSQALEM  166 (191)
T ss_dssp             CC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTTTBCCEEEEEEEECCTTCC--------CCSSEEEEEEHHHHHHH
T ss_pred             eC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCCccCcEEEEEEEEEcccccccCCCCCCCcEEEEEEEEHHHHHHH
Confidence            46 8999999999999999999975322122221 1122345677777654321110 0112579999999999998876


Q ss_pred             ch
Q psy13065         80 RK   81 (114)
Q Consensus        80 ~~   81 (114)
                      ..
T Consensus       167 ~~  168 (191)
T 3o6z_A          167 IK  168 (191)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=98.98  E-value=6.1e-10  Score=80.76  Aligned_cols=80  Identities=13%  Similarity=0.115  Sum_probs=50.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecce-eeeeccCCeEEEEEEEe-ccCCCC----ccCcCCcCcccceEEEeCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDS-YLETTYNDQLTRLYLIP-GVPIDF----KFAPQTRGEIKACQWFPIGD   75 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~-y~~~~~~~~~~~lfv~~-~~~~~~----~~~p~~~~EI~~i~Wf~id~   75 (114)
                      ++..||+.+||+||++|||||++........ +..........++|++. ......    .. ....+|+.++.|+++++
T Consensus       101 ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~e  179 (212)
T 2dsc_A          101 IDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGLSNCTIHIVTVTINGDDAENARPKP-KPGDGEFVEVISLPKND  179 (212)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTTBCCEEEEEEEEEETTSGGGSSCCC-CCCTTCCCEEEEEEGGG
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCccCceEEEEEEEEeCccccccCCCC-CCCCCceEEEEEEEHHH
Confidence            5778999999999999999999875321111 21111123445566553 221110    11 12357999999999999


Q ss_pred             CCCCchh
Q psy13065         76 LPSSRKE   82 (114)
Q Consensus        76 lp~~~~~   82 (114)
                      ++.+..+
T Consensus       180 l~~~~~~  186 (212)
T 2dsc_A          180 LLQRLDA  186 (212)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9877653

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=98.97  E-value=6.6e-10  Score=82.00  Aligned_cols=80  Identities=13%  Similarity=0.125  Sum_probs=48.4

Q ss_pred             ccc-CCCHHHHHHHHhhhhhCcee--eeeeecceeee-eccCCeEEEEEEEeccCCC---CccCcCCcCcccceEEEeCC
Q psy13065          2 MEE-IMMNIISEAKQVLEETGFDS--SHLIAEDSYLE-TTYNDQLTRLYLIPGVPID---FKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~-~es~~eaAvREv~EETGl~v--~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~---~~~~p~~~~EI~~i~Wf~id   74 (114)
                      ++. .||+.+||+||++||||+++  ..+.....+.. .......+++|++......   ........+|+.++.|++++
T Consensus       104 ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~d~~E~~ev~wv~l~  183 (218)
T 3q91_A          104 VDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGLTGSRQTMFYTEVTDAQRSGPGGGLVEEGELIEVVHLPLE  183 (218)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC---CCEEEEEEEEEECGGGBCC---------CCEEEEEEEGG
T ss_pred             eCCCCCCHHHHHHHHHHHHhCCccccCceEEEEEEecCCCccceEEEEEEEEECCcccccCCCCCCCCCcEEEEEEEEHH
Confidence            456 89999999999999999999  44332222322 2223455677776532111   00112235699999999999


Q ss_pred             CCCCCch
Q psy13065         75 DLPSSRK   81 (114)
Q Consensus        75 ~lp~~~~   81 (114)
                      ++..+..
T Consensus       184 el~~~i~  190 (218)
T 3q91_A          184 GAQAFAD  190 (218)
T ss_dssp             GHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=98.96  E-value=1.3e-10  Score=84.05  Aligned_cols=80  Identities=16%  Similarity=0.253  Sum_probs=45.3

Q ss_pred             cc-cCCCHHHHHHHHhhhhhCceeeeeeeccee-eeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 ME-EIMMNIISEAKQVLEETGFDSSHLIAEDSY-LETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~-~~es~~eaAvREv~EETGl~v~~li~~~~y-~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++ ..||+.+||+||++||||+++..+.....+ .......+.+.+|++..............+|+.++.|+++++++.+
T Consensus        79 ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~  158 (207)
T 1mk1_A           79 LDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARR  158 (207)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCCccccEEEEEEEEccccCCCCCCCCCCceEEEEEEEHHHHHHH
Confidence            45 789999999999999999999863211122 1111112345666665433221111123578999999999998876


Q ss_pred             ch
Q psy13065         80 RK   81 (114)
Q Consensus        80 ~~   81 (114)
                      ..
T Consensus       159 ~~  160 (207)
T 1mk1_A          159 VL  160 (207)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=98.96  E-value=1.9e-10  Score=83.57  Aligned_cols=80  Identities=10%  Similarity=-0.080  Sum_probs=49.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCCcc--CcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKF--APQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~--~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++|||||++..+.....+.. .......+++|++.........  ...+.+|+.++.|+++++++.
T Consensus        99 ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g~~~~~~~~f~a~~~~~~~~~~~~~~~e~E~~~~~w~~~~el~~  178 (209)
T 1g0s_A           99 IEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQ  178 (209)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCCccCcEEEEEEEEEccccccCCCCCCCCCcEEEEEEEEHHHHHH
Confidence            5778999999999999999999975322112211 1112345677776532111111  122456888999999999887


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       179 ~i~  181 (209)
T 1g0s_A          179 WVE  181 (209)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=98.96  E-value=4.9e-10  Score=75.42  Aligned_cols=75  Identities=15%  Similarity=0.185  Sum_probs=46.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeec-ceeeeeccCCe----EEEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAE-DSYLETTYNDQ----LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~-~~y~~~~~~~~----~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      ++..||+.+||+||++||||+++..  ++.. ..+........    ...+|.+.....    .+...+|+.++.|++++
T Consensus        50 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~  125 (148)
T 2azw_A           50 IEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTWRQ----LSEPLERTNTLHWVAPE  125 (148)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEE----CSSCC-CCSEEEEECHH
T ss_pred             cCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEcCCCCCcceEEEEEEEEEEcCcC----CcCCCCceeeEEEeeHH
Confidence            4678999999999999999999985  3332 12222211221    234444432221    12234688999999999


Q ss_pred             CCCCCc
Q psy13065         75 DLPSSR   80 (114)
Q Consensus        75 ~lp~~~   80 (114)
                      +++.+.
T Consensus       126 el~~~~  131 (148)
T 2azw_A          126 EAVRLL  131 (148)
T ss_dssp             HHHHHB
T ss_pred             HHHhhh
Confidence            998654

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=98.93  E-value=1e-09  Score=78.43  Aligned_cols=78  Identities=19%  Similarity=0.233  Sum_probs=42.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCce-eeee---eecceeeee---ccCCe-------EEEEEEEeccCCCCccCcCCcCcccc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFD-SSHL---IAEDSYLET---TYNDQ-------LTRLYLIPGVPIDFKFAPQTRGEIKA   67 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~-v~~l---i~~~~y~~~---~~~~~-------~~~lfv~~~~~~~~~~~p~~~~EI~~   67 (114)
                      ++..||+.+||+||++||||++ +...   .....+...   ...+.       ....|++... .+....+ ..+|+.+
T Consensus        78 ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~E~~~  155 (197)
T 3fcm_A           78 SDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECS-EDETLML-KEDENSG  155 (197)
T ss_dssp             CTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEEEEEECCEEETTEEECCEEEEEEEEEEECC-TTSCCCC-CC----C
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEEEeeecCccccCcccCCceeEEEEEEEEeC-CCcccCC-Ccccccc
Confidence            4678999999999999999998 5421   100111111   01111       1133444432 2222222 3479999


Q ss_pred             eEEEeCCCCCCCch
Q psy13065         68 CQWFPIGDLPSSRK   81 (114)
Q Consensus        68 i~Wf~id~lp~~~~   81 (114)
                      ++|+++++++.+..
T Consensus       156 ~~W~~~~el~~~~~  169 (197)
T 3fcm_A          156 VMWIPFNEISKYCS  169 (197)
T ss_dssp             EEEEEGGGHHHHCC
T ss_pred             eEEccHHHHHhhcC
Confidence            99999999986543

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=98.93  E-value=1.7e-10  Score=80.38  Aligned_cols=77  Identities=17%  Similarity=0.233  Sum_probs=44.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeee-ccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLET-TYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~-~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++||||+ +..+.....+... ........+|++...... .. ....+|+.++.|+++++++.+.
T Consensus        69 ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~~~~~~~~~~~f~~~~~~~~-~~-~~~~~E~~~~~W~~~~el~~~~  145 (170)
T 1v8y_A           69 IEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVSPGFTDEKTHVFLAENLKEV-EA-HPDEDEAIEVVWMRPEEALERH  145 (170)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESCTTTBCCEEEEEEEEEEEEC-C---------CEEEEECHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecCCCccccEEEEEEEEecccc-CC-CCCCCceEEEEEEEHHHHHHHH
Confidence            467899999999999999999 7653211122111 111234556666543211 11 1235789999999999988765


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       146 ~  146 (170)
T 1v8y_A          146 Q  146 (170)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=98.92  E-value=8.3e-10  Score=78.28  Aligned_cols=75  Identities=12%  Similarity=0.095  Sum_probs=49.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee-ee--cceeeeeccCC---e-EEEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL-IA--EDSYLETTYND---Q-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l-i~--~~~y~~~~~~~---~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      ++..||+.+||+||++||||+++..+ ..  .-.|.....++   + ...+|++. +.+.  ..+ ..+|+.+++|++++
T Consensus        70 ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~~--~~~-~~~E~~~~~W~~~~  145 (190)
T 1hzt_A           70 PQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAAR-TTSA--LQI-NDDEVMDYQWCDLA  145 (190)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCEEEEECCEEEEE-BCSC--CCC-CTTTEEEEEEECHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCchhhheeeeeEEEEeeCCCCCcceEEEEEEEEe-cCCC--CcC-CccceeeEEEecHH
Confidence            46789999999999999999999864 22  22232222222   2 23445444 3332  222 35799999999999


Q ss_pred             CCCCCc
Q psy13065         75 DLPSSR   80 (114)
Q Consensus        75 ~lp~~~   80 (114)
                      +++.+.
T Consensus       146 el~~~~  151 (190)
T 1hzt_A          146 DVLHGI  151 (190)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=98.91  E-value=2.5e-10  Score=82.33  Aligned_cols=77  Identities=17%  Similarity=0.148  Sum_probs=45.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++||||+++........+. .........+|++. +.......+...++..+++||++++++.+.
T Consensus        75 ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~~-~~~~~~~~~~f~~~-~~~~~~~~~~~~e~~~~~~W~~~~el~~~l  151 (194)
T 2fvv_A           75 MEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFE-NQERKHRTYVYVLI-VTEVLEDWEDSVNIGRKREWFKIEDAIKVL  151 (194)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEE-ETTTTEEEEEEEEE-EEEECSSCHHHHHHCCCEEEEEHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHhCCccccceEEEEEE-cCCCceEEEEEEEE-EccccCCCCCcccccceEEEEEHHHHHHHH
Confidence            477899999999999999999988521111121 12233445555543 221110000011234789999999988654

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=98.90  E-value=3.9e-10  Score=75.76  Aligned_cols=75  Identities=16%  Similarity=0.131  Sum_probs=46.7

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee----eeec---cee--e----eeccCC---eEEEEEEEeccCCCCccCcCCcCcc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH----LIAE---DSY--L----ETTYND---QLTRLYLIPGVPIDFKFAPQTRGEI   65 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~----li~~---~~y--~----~~~~~~---~~~~lfv~~~~~~~~~~~p~~~~EI   65 (114)
                      ++..||+.+||+||++||||+++..    +++.   ..|  .    ..+.++   ....+|.+.. ..+.   +...+|+
T Consensus        43 ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~---~~~~~E~  118 (150)
T 2o1c_A           43 VEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLAL-PHER---QIVFTEH  118 (150)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEEEEEECCGGGGGGBCTTCCEEEEEEEEEEE-SSCC---CCCCSSS
T ss_pred             cCCCCCHHHHHHHHHHHHhCCCccccceeEEeeeceeeeeeecccccccCCCCcceEEEEEEEEc-CCCC---CcChhHh
Confidence            4678999999999999999999874    2221   111  0    011211   2344454443 2221   1123789


Q ss_pred             cceEEEeCCCCCCCc
Q psy13065         66 KACQWFPIGDLPSSR   80 (114)
Q Consensus        66 ~~i~Wf~id~lp~~~   80 (114)
                      .+++|+++++++.+.
T Consensus       119 ~~~~W~~~~el~~~~  133 (150)
T 2o1c_A          119 LAYKWLDAPAAAALT  133 (150)
T ss_dssp             SCEEEEEHHHHHHHC
T ss_pred             hccEeecHHHHHhhh
Confidence            999999999988654

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=98.90  E-value=7.1e-10  Score=86.39  Aligned_cols=80  Identities=18%  Similarity=0.244  Sum_probs=48.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeecc------------CCeEEEEEEEeccCCCC------ccC---
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTY------------NDQLTRLYLIPGVPIDF------KFA---   58 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~------------~~~~~~lfv~~~~~~~~------~~~---   58 (114)
                      ++..||+.+||+||++||||+++..  ++....|.....            ....+.+|++....+..      .+.   
T Consensus        58 ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~l~~~~~~~~  137 (364)
T 3fjy_A           58 LEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVH  137 (364)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------CEEEEEEEECCHHHHHTTHHHHCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceEEEEEEEEecCCccccccccccCccc
Confidence            4678999999999999999999875  333222222110            12335555554332210      011   


Q ss_pred             cCCcCcccceEEEeCCCCCCCch
Q psy13065         59 PQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus        59 p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      ....+|+.+++|+++++++.+..
T Consensus       138 ~~~~~E~~~~~W~~~~e~~~~~~  160 (364)
T 3fjy_A          138 RADVGEINDIVWVSVREARKILS  160 (364)
T ss_dssp             CCCTTTCCEEEEEEHHHHHHHCS
T ss_pred             cCCccceeeeecCcHHHHHHHhc
Confidence            12347999999999998876543

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=98.88  E-value=1.1e-09  Score=74.78  Aligned_cols=75  Identities=7%  Similarity=0.029  Sum_probs=46.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceee--e--eeecceeeeecc------CCeE-EEEEEEeccCCCCccCcCCcCcccceEE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSS--H--LIAEDSYLETTY------NDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQW   70 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~--~--li~~~~y~~~~~------~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~W   70 (114)
                      ++..||+.+||+||++||||+++.  .  +++...+.....      ..+. ..+|.+.. ..+ ... ...+|+.+++|
T Consensus        53 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~-~~~-~~~~e~~~~~W  129 (160)
T 1rya_A           53 VQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRV-SEE-ELL-LPDEQHDDYRW  129 (160)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSCEEEEEEEEEEEC-CGG-GCC-CCSSSEEEEEE
T ss_pred             cCCCCCHHHHHHHHHHHHHCCCCCcccceEEEEEeEEEcccccCCCcCcEEEEEEEEEEc-Ccc-ccc-cCCCccceEEE
Confidence            467899999999999999999964  2  333222222111      1132 34444432 221 111 23468999999


Q ss_pred             EeCCCCCCC
Q psy13065         71 FPIGDLPSS   79 (114)
Q Consensus        71 f~id~lp~~   79 (114)
                      +++++++.+
T Consensus       130 ~~~~el~~~  138 (160)
T 1rya_A          130 LTSDALLAS  138 (160)
T ss_dssp             ECHHHHHHC
T ss_pred             ecHHHHhhc
Confidence            999998864

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=98.85  E-value=1.6e-09  Score=83.16  Aligned_cols=78  Identities=13%  Similarity=0.150  Sum_probs=48.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--ee----ecceeeeecc--CCe-EEEEEEEeccCCCCccCcCCcCcccceEEEe
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LI----AEDSYLETTY--NDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFP   72 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li----~~~~y~~~~~--~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~   72 (114)
                      ++..||+.+||+||++||||+++..  ++    ....|.....  .++ ...+|++....+.........+|+.+++|++
T Consensus       242 ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~W~~  321 (352)
T 2qjt_B          242 LECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWIS  321 (352)
T ss_dssp             CCTTSCHHHHHHHHHHHHHCCSCCHHHHHHHEEEEEEECCTTSCTTSEEEEEEEEEEECSCSSCCCCCCCTTEEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHhhCCCcccchhcceeeeeEEecCCCCCCCccEEEEEEEEEEeCCCCCCccCCCccceEEEEec
Confidence            4778999999999999999999874  21    1111211111  122 3445555432222112223467999999999


Q ss_pred             C-CCCCCC
Q psy13065         73 I-GDLPSS   79 (114)
Q Consensus        73 i-d~lp~~   79 (114)
                      + ++++.+
T Consensus       322 ~~~el~~~  329 (352)
T 2qjt_B          322 LGSNIKNI  329 (352)
T ss_dssp             SSHHHHHT
T ss_pred             HHHHHHhh
Confidence            9 988864

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=98.82  E-value=3e-09  Score=73.09  Aligned_cols=25  Identities=24%  Similarity=0.183  Sum_probs=23.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH   26 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~   26 (114)
                      ++..||+.+||+||++||||+++..
T Consensus        32 ve~gEs~~~aa~REl~EEtGl~~~~   56 (156)
T 1k2e_A           32 VEHNETPIEAVKREFEEETGIVVEP   56 (156)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSEEEEE
T ss_pred             cCCCCCHHHHHHHHHHHHHCCccee
Confidence            4678999999999999999999985

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=98.82  E-value=1.6e-09  Score=82.64  Aligned_cols=77  Identities=14%  Similarity=0.180  Sum_probs=44.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eee----cceeeeec--cCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEe
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIA----EDSYLETT--YNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFP   72 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~----~~~y~~~~--~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~   72 (114)
                      .|..||+.+||+||++||||+++..  +++    ...|....  ..++ ...+|++....+. .......+|+.+++|++
T Consensus       237 ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~e~~~~~W~~  315 (341)
T 2qjo_A          237 IKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGE-LPAVKGGDDAQKAWWMS  315 (341)
T ss_dssp             CCTTSCHHHHHHHHHHHHHCCSSCHHHHHHTEEEEEEECCTTSCTTSCEEEEEEEEECCSSS-CCCCC------CEEEEE
T ss_pred             CCCCCCHHHHHHHHHhhhhCCccccccccccccceEEEeCCCCCCCCcEEEEEEEEEecCCC-cCccCCCCceeeEEEee
Confidence            4678999999999999999999884  221    11121111  1122 3455665432222 11223457999999999


Q ss_pred             CCCCCCC
Q psy13065         73 IGDLPSS   79 (114)
Q Consensus        73 id~lp~~   79 (114)
                      +++++.+
T Consensus       316 ~~el~~~  322 (341)
T 2qjo_A          316 LADLYAQ  322 (341)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhhh
Confidence            9999875

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=98.80  E-value=9.9e-10  Score=81.68  Aligned_cols=71  Identities=8%  Similarity=0.040  Sum_probs=44.0

Q ss_pred             CCCHHHHHHHHhhhhhCceeeeeeecceeee--eccCCeEE-EEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          5 IMMNIISEAKQVLEETGFDSSHLIAEDSYLE--TTYNDQLT-RLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         5 ~es~~eaAvREv~EETGl~v~~li~~~~y~~--~~~~~~~~-~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      .||+.+||+||++||||+++..+-....|..  ...++..+ ..|++. ++... ..+ ..+|+.+++|+++++++.
T Consensus        65 gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~r~~~~~~~~~~y~a~-~~~~~-~~~-~~~e~~~~~W~~~~el~~  138 (240)
T 3gz5_A           65 DESLEQTVLRKLAEKTAVVPPYIEQLCTVGNNSRDARGWSVTVCYTAL-MSYQA-CQI-QIASVSDVKWWPLADVLQ  138 (240)
T ss_dssp             CSBHHHHHHHHHHHHHSSCCSEEEEEEEEEESSSSTTSCEEEEEEEEE-CCHHH-HHH-HHTTCTTEEEEEHHHHTT
T ss_pred             CcCHHHHHHHHHHHHHCCCCCceeeEEEeCCCccCCCceEEEEEEEEE-ecccc-cCC-CCCcccceEEecHHHccc
Confidence            8999999999999999999874211112222  12233333 334433 22211 111 246899999999999973

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=98.78  E-value=5.1e-09  Score=79.12  Aligned_cols=72  Identities=18%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeee--ccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLET--TYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~--~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      ++..||+.+||+||++||||+++..  +.....|...  ...+. ...+|++. ++...   ....+|+.+++|++++++
T Consensus        79 ve~gEs~~~AA~REl~EEtGl~v~~~~l~~l~~~~~~~r~~~~~~~~~~y~a~-~~~~~---~~~~~E~~~~~W~~~~e~  154 (273)
T 2fml_A           79 VNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAF-IGEEP---LIAGDDAKEVHWFNLERH  154 (273)
T ss_dssp             CCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEE-CCCCC---CCCCTTEEEEEEEEEEEE
T ss_pred             CCCCcCHHHHHHHHHHHHHCCCCCcCcEEEEEEEcCCCCCCCceEEEEEEEEE-eCCCC---CCCCcceeeEEEEEhhHh
Confidence            4678999999999999999988763  2211222211  11223 33445443 33222   334579999999999964


Q ss_pred             C
Q psy13065         77 P   77 (114)
Q Consensus        77 p   77 (114)
                      .
T Consensus       155 ~  155 (273)
T 2fml_A          155 G  155 (273)
T ss_dssp             T
T ss_pred             h
Confidence            3

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=98.72  E-value=3.1e-08  Score=75.74  Aligned_cols=82  Identities=10%  Similarity=0.002  Sum_probs=48.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceee--------------eeeec-ce--eeee--ccCC----e-EEEEEEEeccCCCC--
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSS--------------HLIAE-DS--YLET--TYND----Q-LTRLYLIPGVPIDF--   55 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~--------------~li~~-~~--y~~~--~~~~----~-~~~lfv~~~~~~~~--   55 (114)
                      ++..||+.+||+||++||||+++.              .+... ..  |...  ....    . ...+|.+....+..  
T Consensus       159 Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~~~~  238 (292)
T 1q33_A          159 VDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMD  238 (292)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCCcccEEEEEEEEEEeCCCcccc
Confidence            578899999999999999999831              12211 11  2211  1111    1 23334433211110  


Q ss_pred             ccCcCCcCcccceEEEeCCCCCCCchhh
Q psy13065         56 KFAPQTRGEIKACQWFPIGDLPSSRKEI   83 (114)
Q Consensus        56 ~~~p~~~~EI~~i~Wf~id~lp~~~~~~   83 (114)
                      ...++..+|+.+++||++++++.+..+.
T Consensus       239 ~~~~~~~~E~~~~~W~~~del~~L~~~h  266 (292)
T 1q33_A          239 NLMLEAGDDAGKVKWVDINDKLKLYASH  266 (292)
T ss_dssp             TCCCCCCTTCSEEEEEECCTTCCCSTTH
T ss_pred             ccccCCCCccceEEEEEcccCcccCHhH
Confidence            1123446799999999999999875443

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=98.71  E-value=1.1e-09  Score=80.97  Aligned_cols=74  Identities=14%  Similarity=0.089  Sum_probs=45.9

Q ss_pred             cccCCC------HHHHHHHHhhhhhCceeee--eeecceeee-eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEe
Q psy13065          2 MEEIMM------NIISEAKQVLEETGFDSSH--LIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP   72 (114)
Q Consensus         2 ~~~~es------~~eaAvREv~EETGl~v~~--li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~   72 (114)
                      +|..||      +.+||+||++||||+++..  +++...+.. .....+...+|.+...    .+.++ ..|+.+++|++
T Consensus       107 VE~GEs~~p~EtleeAa~REl~EEtGl~v~~~~~ig~~~~~~~~~~~~~l~~~f~~~~~----~g~~~-~~E~~~~~W~~  181 (211)
T 3e57_A          107 VREGDGATPREAFLKGLEREVNEEVDVSLRELEFLGLINSSTTEVSRVHLGALFLGRGK----FFSVK-EKDLFEWELIK  181 (211)
T ss_dssp             CBGGGCSSHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCSSHHHHTEEEEEEEEEEE----EEEES-CTTTCEEEEEE
T ss_pred             EeCCCCCCchhhHHHHHHHHHHHHhCCeeeccEEEEEEeccCCCCCeEEEEEEEEEEeC----CceeC-CCCeEEEEEEE
Confidence            455666      4999999999999999885  333211111 0011122334655532    23343 35778999999


Q ss_pred             CCCCCCCc
Q psy13065         73 IGDLPSSR   80 (114)
Q Consensus        73 id~lp~~~   80 (114)
                      +++|+.+.
T Consensus       182 ~~eL~~~~  189 (211)
T 3e57_A          182 LEELEKFS  189 (211)
T ss_dssp             HHHHHHHG
T ss_pred             HHHHHHhH
Confidence            99998763

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=98.70  E-value=1.5e-08  Score=73.75  Aligned_cols=78  Identities=12%  Similarity=0.038  Sum_probs=47.3

Q ss_pred             cccCC-CHHHHHHHHhhhhhCceeeee--e---ecceeeeeccCCeEEEEEEEeccCCCCc------cC-cCCcCcccce
Q psy13065          2 MEEIM-MNIISEAKQVLEETGFDSSHL--I---AEDSYLETTYNDQLTRLYLIPGVPIDFK------FA-PQTRGEIKAC   68 (114)
Q Consensus         2 ~~~~e-s~~eaAvREv~EETGl~v~~l--i---~~~~y~~~~~~~~~~~lfv~~~~~~~~~------~~-p~~~~EI~~i   68 (114)
                      ++..| |+.+||+||++||||+++...  .   ....+...+.....+++|++....+...      .. ....+|+.++
T Consensus        75 ve~gE~t~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~  154 (212)
T 1u20_A           75 VDTRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGL  154 (212)
T ss_dssp             ECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEE
T ss_pred             cCCCCCCHHHHHHHHHHHHHCCCccccceeeeeEEEeccccCCCcEEEEEEEEEecCCCcccccccccccccCCcceEEE
Confidence            46778 999999999999999998742  0   0111111122234455565543221110      00 0124688999


Q ss_pred             EEEeCCCCCCC
Q psy13065         69 QWFPIGDLPSS   79 (114)
Q Consensus        69 ~Wf~id~lp~~   79 (114)
                      .|+++++++..
T Consensus       155 ~wvpl~el~~~  165 (212)
T 1u20_A          155 IRVPLYTLRDR  165 (212)
T ss_dssp             EECCCSBCTTS
T ss_pred             EEEEHHHhhhh
Confidence            99999999865

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=98.65  E-value=3e-08  Score=72.92  Aligned_cols=77  Identities=10%  Similarity=0.069  Sum_probs=46.5

Q ss_pred             cccCC-CHHHHHHHHhhhhhCceeee-eeecceeeee--ccCCeEEEEEEEeccCCCCc-------c-CcCCcCcccceE
Q psy13065          2 MEEIM-MNIISEAKQVLEETGFDSSH-LIAEDSYLET--TYNDQLTRLYLIPGVPIDFK-------F-APQTRGEIKACQ   69 (114)
Q Consensus         2 ~~~~e-s~~eaAvREv~EETGl~v~~-li~~~~y~~~--~~~~~~~~lfv~~~~~~~~~-------~-~p~~~~EI~~i~   69 (114)
                      ++..| |+.+||+||++||||+++.. .+..-.+...  ....+.+.+|+.+.+..+..       . .....+|..++.
T Consensus        84 ve~gE~t~~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~  163 (217)
T 2xsq_A           84 VDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLV  163 (217)
T ss_dssp             CCTTCSSHHHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEE
T ss_pred             cCCCCCCHHHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEeccccceecccccccccccCCceeeEE
Confidence            46789 99999999999999999984 1211122221  11223444444444432111       0 111246889999


Q ss_pred             EEeCCCCCC
Q psy13065         70 WFPIGDLPS   78 (114)
Q Consensus        70 Wf~id~lp~   78 (114)
                      |++++++..
T Consensus       164 ~vPl~~l~d  172 (217)
T 2xsq_A          164 RVPLYTLRD  172 (217)
T ss_dssp             ECCCSBCTT
T ss_pred             EEEHHHhhh
Confidence            999999863

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=98.48  E-value=5.5e-08  Score=66.40  Aligned_cols=71  Identities=11%  Similarity=0.108  Sum_probs=43.4

Q ss_pred             ccCCCHH-HHHHHHhhhhhC-ceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          3 EEIMMNI-ISEAKQVLEETG-FDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         3 ~~~es~~-eaAvREv~EETG-l~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      +..|++. +||+||++|||| +++..  .+....  +...... .+.+|.+....+    .+. ..|..++.|+++++++
T Consensus        59 e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~----~~~-~~e~~~~~W~~~~el~  131 (155)
T 1x51_A           59 EPSEQLQRKALLQELQRWAGPLPATHLRHLGEVV--HTFSHIKLTYQVYGLALEGQ----TPV-TTVPPGARWLTQEEFH  131 (155)
T ss_dssp             CSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBC--CBCSSCEEEEEEEEEECSSC----CCC-CCCCTTEEEEEHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcceeeeeecceEE--EecCCccEEEEEEEEEEcCC----CCC-CCCCCccEEccHHHhh
Confidence            5678886 999999999999 87754  222111  1112222 344555543211    122 3567899999999887


Q ss_pred             CCc
Q psy13065         78 SSR   80 (114)
Q Consensus        78 ~~~   80 (114)
                      .+.
T Consensus       132 ~~~  134 (155)
T 1x51_A          132 TAA  134 (155)
T ss_dssp             HSC
T ss_pred             hcC
Confidence            544

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=98.35  E-value=3.5e-07  Score=68.44  Aligned_cols=72  Identities=11%  Similarity=0.130  Sum_probs=43.9

Q ss_pred             CCH---HHHHHHHhhhhhCceeee-----e--eecceeeeeccCC----eEEEEEEEeccCCCCccCcCCcCcccceEEE
Q psy13065          6 MMN---IISEAKQVLEETGFDSSH-----L--IAEDSYLETTYND----QLTRLYLIPGVPIDFKFAPQTRGEIKACQWF   71 (114)
Q Consensus         6 es~---~eaAvREv~EETGl~v~~-----l--i~~~~y~~~~~~~----~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf   71 (114)
                      |++   .+||+||++||||+++..     +  +..-.|......+    ....+|++.. ..  ...+ ..+|+.+++|+
T Consensus       118 Et~~~~~eAA~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~--~~~~-~~~Ev~~~~wv  193 (246)
T 2pny_A          118 KDAIGVRRAAQRRLQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRK-NV--TLNP-DPSETKSILYL  193 (246)
T ss_dssp             GGGHHHHHHHHHHHHHHHCCCTTTCCGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEEC-CC--CCCC-CTTTEEEEEEE
T ss_pred             ccchhHHHHHHHHHHHHHCCCccccCccccEEEEEEEEEecCCCceeeeEEEEEEEEEE-CC--CCCC-ChHHeeEEEEE
Confidence            776   999999999999998652     1  2211222221111    1234455542 22  2233 25799999999


Q ss_pred             eCCCCCCCch
Q psy13065         72 PIGDLPSSRK   81 (114)
Q Consensus        72 ~id~lp~~~~   81 (114)
                      +++++.....
T Consensus       194 ~~eel~~~l~  203 (246)
T 2pny_A          194 SQEELWELLE  203 (246)
T ss_dssp             CHHHHHHHHH
T ss_pred             eHHHHHHHHH
Confidence            9999876543

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=98.34  E-value=4.1e-07  Score=67.49  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             CC---HHHHHHHHhhhhhCceeee-----e--eecceeeeeccCC----eEEEEEEEeccCCCCccCcCCcCcccceEEE
Q psy13065          6 MM---NIISEAKQVLEETGFDSSH-----L--IAEDSYLETTYND----QLTRLYLIPGVPIDFKFAPQTRGEIKACQWF   71 (114)
Q Consensus         6 es---~~eaAvREv~EETGl~v~~-----l--i~~~~y~~~~~~~----~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf   71 (114)
                      ||   +.+||+||++||||+++..     +  +..-.|......+    ....+|++.. ..  ...+ ..+|+.+++|+
T Consensus       107 E~~~~~~~Aa~REl~EElGi~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~-~~--~~~~-~~~Ev~~~~wv  182 (235)
T 2dho_A          107 SDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRM-NV--TLNP-DPNEIKSYCYV  182 (235)
T ss_dssp             GGGHHHHHHHHHHHHHHHCCCGGGSCGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEEC-CC--CCCC-CTTTEEEEEEE
T ss_pred             ccchhHHHHHHHHHHHHHCCCccccChhhcEEEEEEEEeccCCCccceeEEEEEEEEEE-CC--CCcC-ChHHEEEEEEE
Confidence            67   4999999999999998752     1  2211222221111    1234455542 22  2233 35799999999


Q ss_pred             eCCCCCCCch
Q psy13065         72 PIGDLPSSRK   81 (114)
Q Consensus        72 ~id~lp~~~~   81 (114)
                      +++++..+..
T Consensus       183 ~~~el~~~l~  192 (235)
T 2dho_A          183 SKEELKELLK  192 (235)
T ss_dssp             CHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            9999876543

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=98.33  E-value=4.8e-07  Score=69.88  Aligned_cols=77  Identities=17%  Similarity=0.209  Sum_probs=47.9

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeee---ee--ecceeeeeccCC-e--EEEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSH---LI--AEDSYLETTYND-Q--LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~---li--~~~~y~~~~~~~-~--~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      +..||+.+||+||++||+|+.+..   +.  +.-.|......+ +  ...+|.+ .++.+....++ ++|+.+++|++++
T Consensus       160 ~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~G~~~E~~~vy~~-~l~~~~~p~~~-~~EV~~~~~v~~~  237 (300)
T 3dup_A          160 PADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDL-ALPEDFRPHNT-DGEMADFMLWPAA  237 (300)
T ss_dssp             CTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEE-ECCTTCCCCCT-TSSEEEEEEEEHH
T ss_pred             CCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCCCeEEEEEEEEEE-EecCCCcCCCC-chHhheEEEECHH
Confidence            457999999999999999998753   11  112333332222 2  2233333 23433333343 5799999999999


Q ss_pred             CCCCCch
Q psy13065         75 DLPSSRK   81 (114)
Q Consensus        75 ~lp~~~~   81 (114)
                      ++.....
T Consensus       238 El~~~l~  244 (300)
T 3dup_A          238 KVVEAVR  244 (300)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8876544

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=98.32  E-value=7.7e-07  Score=69.79  Aligned_cols=70  Identities=9%  Similarity=-0.082  Sum_probs=43.8

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      +.. |+.+|++||++||||+++...-....+.+.+.+.+. +.+|.+. +.++       ..|..++.|+++++++.+..
T Consensus       277 e~g-t~~~al~REl~EE~Gl~v~~~~~l~~~~h~~~h~~~~~~~~~~~-~~~~-------~~e~~~~~Wv~~~el~~~~l  347 (369)
T 3fsp_A          277 DGA-DGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGR-LVHG-------GPVEEPYRLAPEDELKAYAF  347 (369)
T ss_dssp             SSS-CTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEE-ECCS-------SCCCTTEEEEEGGGGGGSCC
T ss_pred             CCC-CcHHHHHHHHHHHhCCceeeecccccEEEEcceEEEEEEEEEEE-EcCC-------CCCccccEEeeHHHhhhCCC
Confidence            345 899999999999999999852111122222222332 3334443 2221       35789999999999987543

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=98.13  E-value=1.6e-06  Score=67.29  Aligned_cols=64  Identities=11%  Similarity=0.142  Sum_probs=40.8

Q ss_pred             cCCCHHHHHHHHhhhhh-Cceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          4 EIMMNIISEAKQVLEET-GFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         4 ~~es~~eaAvREv~EET-Gl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ..++..++|+||++||| |++|+.  +++  .|-... ..+...+|.+....+          +..+++||++++||.+.
T Consensus       211 ~~~~~~~~a~RE~~EEttGl~v~~~~L~~--v~~~~~-~~~~~i~f~~~~~~g----------~~~e~~~f~~~elp~~~  277 (321)
T 3rh7_A          211 VEGGDPARTLAAYLEQLTGLNVTIGFLYS--VYEDKS-DGRQNIVYHALASDG----------APRQGRFLRPAELAAAK  277 (321)
T ss_dssp             ESSSCHHHHHHHHHHHHHSSCEEEEEEEE--EEECTT-TCCEEEEEEEEECSS----------CCSSSEEECHHHHTTCE
T ss_pred             CCCChhHHHHHHHHHHhcCCEEeeceEEE--EEEcCC-CceEEEEEEEEeCCC----------CeeeeEEECHHHCCCcc
Confidence            35666679999999997 999995  332  122111 223233444443221          13889999999999884

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=97.51  E-value=0.00011  Score=54.49  Aligned_cols=18  Identities=17%  Similarity=0.272  Sum_probs=16.4

Q ss_pred             HHHHHHHHhhhhhCceee
Q psy13065          8 NIISEAKQVLEETGFDSS   25 (114)
Q Consensus         8 ~~eaAvREv~EETGl~v~   25 (114)
                      ..+||+||++||||+.+.
T Consensus        75 ~~~aAiRE~~EE~Gl~l~   92 (232)
T 3qsj_A           75 LAVTALRETAEEIGWLLA   92 (232)
T ss_dssp             HHHHHHHHHHHHHSCCCS
T ss_pred             HHHHHHHHHHHHhCceec
Confidence            689999999999999875

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=95.87  E-value=0.0052  Score=45.21  Aligned_cols=24  Identities=4%  Similarity=-0.151  Sum_probs=18.6

Q ss_pred             cccCC-CHHHHHHHHhhhhhCc-eee
Q psy13065          2 MEEIM-MNIISEAKQVLEETGF-DSS   25 (114)
Q Consensus         2 ~~~~e-s~~eaAvREv~EETGl-~v~   25 (114)
                      .|..| |+++|++||+.||+|+ .|.
T Consensus        63 Ve~gE~t~e~aL~REl~EElg~~~V~   88 (214)
T 3kvh_A           63 VDRRFWSLEDGLNRVLGLGLGCLRLT   88 (214)
T ss_dssp             ECTTTCCHHHHHHHSCCSCC---CCC
T ss_pred             CCCCCCCHHHHHHHHHHHhhCCeeee
Confidence            35678 9999999999999997 455

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=90.49  E-value=0.15  Score=37.36  Aligned_cols=21  Identities=10%  Similarity=-0.051  Sum_probs=18.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGF   22 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl   22 (114)
                      +|..|++++|++||+.||.|.
T Consensus        92 le~gE~~~eaL~REL~EELg~  112 (208)
T 3bho_A           92 LNPGEDEVEGLKRLMTEILGR  112 (208)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCC
T ss_pred             cCCCCCHHHHHHHHHHHHhCC
Confidence            467899999999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	1e-15

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 66.3 bits (161), Expect = 1e-15
 Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 7/96 (7%)

Query: 13  AKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFP 72
            ++V EETGFD S  I  + +++ T   Q  RLY+IPG+ +D +F  +TR EI   +W  
Sbjct: 47  IREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHN 106

Query: 73  IGDLPSSRKEIKTVLINGTPVGTNAFFMIMPFINSI 108
           + DLP+ +K     +        N F+M++PF+  +
Sbjct: 107 LMDLPTFKKNKPQTMK-------NKFYMVIPFLAPL 135

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.84
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.42
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.39
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.34
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.33
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.31
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.3
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.26
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.23
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.22
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.21
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.2
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.16
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.16
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.15
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.13
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.13
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.11
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.11
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.11
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.05
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.03
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.02
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	98.96
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	98.89
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	98.83
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	98.67
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	98.33
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	98.01
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	93.81

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.84  E-value=2.1e-21  Score=133.57  Aligned_cols=103  Identities=32%  Similarity=0.628  Sum_probs=73.4

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCch
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRK   81 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~   81 (114)
                      ++..||+.+||+||++||||+++..+.....+......++.+++|++..+..+..+.+...+|+++++||++++||.+..
T Consensus        36 ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ei~~~~W~~~~el~~~~~  115 (151)
T d2a6ta2          36 IDKDESDVDCAIREVYEETGFDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTFKK  115 (151)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCEEEEEETTEEEEEEEECCCCTTCCCC------EEEEEEEEGGGSTTCC-
T ss_pred             ccCCCCHHHHHHHHHHHHhCCCceeeeecceEEeecccCceEEEEEEEEeccCCcccccCCCccceEEEEEHHHhhhhhh
Confidence            57899999999999999999999864444445554456666777777776665556666678999999999999998765


Q ss_pred             hhhhhhccCCCCCCCceEEEccchHhHHhh
Q psy13065         82 EIKTVLINGTPVGTNAFFMIMPFINSINIA  111 (114)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (114)
                      +..       ....++|||+.|||++|+-|
T Consensus       116 ~~~-------~~~~~~~~~v~~fi~~L~~w  138 (151)
T d2a6ta2         116 NKP-------QTMKNKFYMVIPFLAPLKKW  138 (151)
T ss_dssp             ------------CCGGGTTTGGGHHHHHHH
T ss_pred             ccc-------ccccchhhhHHHHHHHHHHH
Confidence            321       13467899999999999876

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.8e-13  Score=89.99  Aligned_cols=76  Identities=20%  Similarity=0.153  Sum_probs=49.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      +|..||+.+||+||++||||+++........+  .+...+. ..+|++....+.  ..+ +.+|+.+++||++++||.+.
T Consensus        36 ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~--~~~-~~~E~~~~~W~~~~el~~l~  110 (131)
T d1vk6a2          36 VEVGETLEQAVAREVMEESGIKVKNLRYVTSQ--PWPFPQSLMTAFMAEYDSGD--IVI-DPKELLEANWYRYDDLPLLP  110 (131)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEE--EEETTEEEEEEEEEEEEECC--CCC-CTTTEEEEEEEETTSCCSCC
T ss_pred             CcCCCcHHHHHHHHHHHHhCCcccceeEEEEe--ccCcCceEEEEEEEEEcCCc--ccC-CCccEEEEEEEcHHHHhhCC
Confidence            57899999999999999999999863111111  1122333 333444333222  222 34799999999999999876


Q ss_pred             hh
Q psy13065         81 KE   82 (114)
Q Consensus        81 ~~   82 (114)
                      ..
T Consensus       111 ~~  112 (131)
T d1vk6a2         111 PP  112 (131)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=1.1e-13  Score=91.88  Aligned_cols=73  Identities=19%  Similarity=0.270  Sum_probs=48.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++...  +....|.........+++|++.. .    ..+...+|+.+++|+++++++.+
T Consensus        33 ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~e~~~~~W~~~~e~~~~  107 (126)
T d1vcda1          33 PEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWFLMRG-E----GAPRLEEGMTGAGWFSPEEARAL  107 (126)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEE-E----SCCCCCTTCCEEEEECHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeeeccCCCeEEEEEEEEEEE-c----CCCCCCccceEEEEEEHHHHhhc
Confidence            57889999999999999999999853  33223322211112344444432 2    23445679999999999998764

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=4.3e-13  Score=91.60  Aligned_cols=74  Identities=16%  Similarity=0.188  Sum_probs=48.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  +++...+... ...+. +.+|.+....+    .+. ..|..+++||++++|+.
T Consensus        45 ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~-~~e~~~~~W~~~~el~~  118 (155)
T d2b06a1          45 VENDEAFAESVIREIYEETGLTIQNPQLVGIKNWPLD-TGGRYIVICYKATEFSG----TLQ-SSEEGEVSWVQKDQIPN  118 (155)
T ss_dssp             CCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEEECT-TSCEEEEEEEEECEEEE----CCC-CBTTBEEEEEEGGGGGG
T ss_pred             EcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEEeecC-CCCeEEEEEEEEEecCC----ccC-CCchheEEEEEHHHhcc
Confidence            5789999999999999999999985  3433233222 22333 33444432221    222 35789999999999987


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       119 l~~  121 (155)
T d2b06a1         119 LNL  121 (155)
T ss_dssp             SCB
T ss_pred             CCC
Confidence            643

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.33  E-value=4.1e-13  Score=91.82  Aligned_cols=79  Identities=10%  Similarity=0.109  Sum_probs=50.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeee--eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE--TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~--~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++..+.....|..  +..+++.+.+++.+.++.+.  .+...+|+.+++||+++++|.+
T Consensus        48 ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~~lp~l  125 (147)
T d2fb1a2          48 VQKDESVDDAAKRVLAELTGLENVYMEQVGAFGAIDRDPGERVVSIAYYALININE--YDRELVQKHNAYWVNINELPAL  125 (147)
T ss_dssp             CCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEECCTTSSSSSCEEEEEEEEECCTTS--SCHHHHHHTTEEEEETTSCCCB
T ss_pred             ecCCCCHHHHHHHHHHHHhCCcccceeeeeEecCCcccCCCceEEEEEEEEecCCc--ccCCCcchhheEEecHHhchhc
Confidence            5789999999999999999999875311111211  12234444333333333221  1223468899999999999988


Q ss_pred             chh
Q psy13065         80 RKE   82 (114)
Q Consensus        80 ~~~   82 (114)
                      ..+
T Consensus       126 afD  128 (147)
T d2fb1a2         126 IFD  128 (147)
T ss_dssp             STT
T ss_pred             ccC
Confidence            754

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.31  E-value=1.6e-12  Score=88.20  Aligned_cols=78  Identities=19%  Similarity=0.198  Sum_probs=51.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCC--eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYND--QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~--~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++..+-....+......+  ...++|++....+ ....+...+|+.+++|+++++++.+
T Consensus        51 ve~gE~~~~aa~RE~~EEtGl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~E~~~~~w~~~~el~~l  129 (158)
T d1sjya_          51 VEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPG-QTLAPAFTDEIAEASFVSREDFAQL  129 (158)
T ss_dssp             CCTTSCHHHHHHHHHHHHHSCCEEEEEEEEEEEEECTTSCEEEEEEEEEEECSS-CCCCCCCCSSEEEEEEECHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHhCccceeeEEEEEEEEECCCCCEEEEEEEEEEEcCC-cccCCCCCcceEEEEEEEHHHHhhh
Confidence            578999999999999999999998632111222222232  2344555544433 2334555679999999999988754


Q ss_pred             c
Q psy13065         80 R   80 (114)
Q Consensus        80 ~   80 (114)
                      .
T Consensus       130 ~  130 (158)
T d1sjya_         130 Y  130 (158)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.8e-12  Score=86.56  Aligned_cols=75  Identities=13%  Similarity=0.178  Sum_probs=47.2

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++..||+.+||+||++||||+++..  +++...+.... ......++++...  ...+++...+| .+.+||++++||.+
T Consensus        39 ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~ee-~~~~W~~~~~l~~~  114 (156)
T d1irya_          39 VQEGETIEDGARRELQEESGLTVDALHKVGQIVFEFVG-EPELMDVHVFCTD--SIQGTPVESDE-MRPCWFQLDQIPFK  114 (156)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEEEEEETT-CSCEEEEEEECCC--CBCSCCCCCSS-EEEEEEETTCCCST
T ss_pred             ecCCCCHHHHHHHHHHHHHCCcccceEEEEEEEEEcCC-CCEEEEEEEEEEE--eecCcccCCch-hheEEeEHHHCCcC
Confidence            5789999999999999999999875  33322222221 2233333333221  22234444444 67899999999976


Q ss_pred             c
Q psy13065         80 R   80 (114)
Q Consensus        80 ~   80 (114)
                      .
T Consensus       115 ~  115 (156)
T d1irya_         115 D  115 (156)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.26  E-value=1.4e-12  Score=87.37  Aligned_cols=78  Identities=19%  Similarity=0.196  Sum_probs=48.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++||||+++..  ++....+.....+... ..+|++......  ......+|+.+++|+++++++.
T Consensus        37 ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~W~~~~el~~  114 (146)
T d2b0va1          37 LEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASNGTTYLRFTFSGQVVSFD--PDRKLDTGIVRAAWFSIDEIRA  114 (146)
T ss_dssp             CCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEC--TTSCCCTTEEEEEEEEHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHHhheeecccceEEEEEEEecCCCCeEEEEEEEEEEeecCC--CCCCCCcceeEEEEeeHHHHhh
Confidence            5789999999999999999999985  2322222222212222 233333322221  1223457999999999999876


Q ss_pred             Cch
Q psy13065         79 SRK   81 (114)
Q Consensus        79 ~~~   81 (114)
                      +..
T Consensus       115 ~~~  117 (146)
T d2b0va1         115 KQA  117 (146)
T ss_dssp             TGG
T ss_pred             Ccc
Confidence            544

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=1.2e-11  Score=81.63  Aligned_cols=75  Identities=13%  Similarity=0.138  Sum_probs=48.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++||||+++...-....+.+.+...+. ..+|.+....    +.+. ..|..+++|+++++++.+.
T Consensus        40 ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~E~~~~~W~~~~el~~~~  114 (129)
T d1puna_          40 IEMGETPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVERWE----GEPW-GKEGQPGEWMSLVGLNADD  114 (129)
T ss_dssp             CTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEEEEECSSEEEEEEEEECCCCS----SCCC-TTSSSCCEEECGGGCCTTT
T ss_pred             ecCCCchhHHHHHHHHHHhCCccccceeeeEEeecccccceeEEEEEEeecc----CcCC-CCccceEEEEEHHHcccCC
Confidence            57889999999999999999999852111111122223333 3344443332    2333 3688999999999998764


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       115 ~  115 (129)
T d1puna_         115 F  115 (129)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.22  E-value=4.2e-12  Score=83.81  Aligned_cols=76  Identities=11%  Similarity=0.072  Sum_probs=47.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecc--eeeeeccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAED--SYLETTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~--~y~~~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      .+..||+.+||+||++||||+++...  +...  .+....... ..+.+|+... ....  .....+|+.+++||+++++
T Consensus        38 ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~E~~~~~W~~~~e~  114 (137)
T d1ktga_          38 VDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKL-NNPD--DVQLSHEHQNWKWCELEDA  114 (137)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEEEEETTEEEEEEEEEEEE-CSCC--CCCCCTTEEEEEEECHHHH
T ss_pred             cccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeeecCCCcceEEEEEEEEEe-cCCC--CcCCCcceEEEEEEEHHHH
Confidence            57899999999999999999998752  2111  111111122 2333344332 2222  2334579999999999998


Q ss_pred             CCCc
Q psy13065         77 PSSR   80 (114)
Q Consensus        77 p~~~   80 (114)
                      +...
T Consensus       115 ~~~~  118 (137)
T d1ktga_         115 IKIA  118 (137)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8553

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=6.1e-12  Score=86.52  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=48.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++|||||++..+.....+........ ...+|.+.. .+  ...++ .+|+.+++|++++++....
T Consensus        68 ie~gEs~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~-~~Ev~~~~w~~~~el~~~~  143 (161)
T d2fkba1          68 VQADEQLLESARREAEEELGIAGVPFAEHGQFYFEDKNCRVWGALFSCVS-HG--PFALQ-EDEVSEVCWLTPEEITARC  143 (161)
T ss_dssp             CBTTCCHHHHHHHHHHHHHCCBSCCCEEEEEEEEEETTEEEEEEEEEEEC-CC--CCCCC-TTTEEEEEEECHHHHHTTG
T ss_pred             ccccCcHHHHHHHHHHHHhCCccceeEEEEEEEeecCCcEEEEEEEEEEE-CC--CCcCC-hhHeeEEEEEeHHHHhhhh
Confidence            5788999999999999999998875432223322222222 233444332 22  23333 4799999999999887655


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       144 ~  144 (161)
T d2fkba1         144 D  144 (161)
T ss_dssp             G
T ss_pred             h
Confidence            4

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.2e-12  Score=87.06  Aligned_cols=77  Identities=16%  Similarity=0.163  Sum_probs=47.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeeeeccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLETTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ++..||+.+||+||++|||||+++..--...+....... ..+.+|.+......   .+...+|+.+++||++++++.+.
T Consensus        46 ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~W~~~~e~~~~l  122 (135)
T d2fvva1          46 MEPEEEPSVAAVREVCEEAGVKGTLGRLVGIFENQERKHRTYVYVLIVTEVLED---WEDSVNIGRKREWFKIEDAIKVL  122 (135)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSS---CHHHHHHCCCEEEEEHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHhCCcceeeEEEEEEeeccCCccEEEEEEEEEeecCC---CCCCCCceeEEEEEEHHHHHHHH
Confidence            577899999999999999999998521111121111111 22222333322221   22335689999999999987654


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       123 ~  123 (135)
T d2fvva1         123 Q  123 (135)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.16  E-value=3.1e-12  Score=88.55  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=46.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      +|.+||+.+||+||++||||+.++. .....+.. .....+.+++|++..+... .. ..+.+|..++.|+++++++.+.
T Consensus        59 ve~gE~~~~aA~REl~EEtG~~~~~-~~l~~~~~~~g~~~~~~~~f~a~~~~~~-~~-~~d~~E~~ev~w~~~~e~~~~i  135 (158)
T d1v8ya_          59 IEPGEDPLEAARRELAEQTGLSGDL-TYLFSYFVSPGFTDEKTHVFLAENLKEV-EA-HPDEDEAIEVVWMRPEEALERH  135 (158)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSEEEEE-EEEEEEESCTTTBCCEEEEEEEEEEEEC-C---------CEEEEECHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHhhcCCccee-eeecceecCCCcceEEEEEEEEcccccc-cc-CCCCCeeEEEEEEEHHHHHHHH
Confidence            5789999999999999999998752 11112221 1122455677776554322 11 2234688899999999987654


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       136 ~  136 (158)
T d1v8ya_         136 Q  136 (158)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=2.1e-11  Score=86.28  Aligned_cols=78  Identities=10%  Similarity=0.096  Sum_probs=53.1

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeeeecceee-eeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCc
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLIAEDSYL-ETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li~~~~y~-~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      +|..||+.+||+||++|||||.+..+.....+. ......+.+++|++..+..+.  ...+.+|..++.|+++++++.+.
T Consensus        83 ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~~~~~~~~~~a~~~~~~~--~~~de~E~~~~~~~~~~e~~~~i  160 (186)
T d1vhza_          83 IDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPES--LEGDEPEPLPQVRWPLAHMMDLL  160 (186)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTTCCCEEEEEEEEEEEECC--CCCCCSSCCCEEEEEGGGGGGGG
T ss_pred             CCCCcCHHHHHHHHHHHHhccccccceecceeeccccccceEEEEEEEEeccccc--CCCCCCcEEEEEEEeHHHHHHHH
Confidence            578999999999999999999998643222222 122234556667766543221  12345688999999999998766


Q ss_pred             h
Q psy13065         81 K   81 (114)
Q Consensus        81 ~   81 (114)
                      .
T Consensus       161 ~  161 (186)
T d1vhza_         161 E  161 (186)
T ss_dssp             G
T ss_pred             H
Confidence            5

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.15  E-value=1.4e-11  Score=88.26  Aligned_cols=77  Identities=13%  Similarity=0.088  Sum_probs=51.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeee--eccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLE--TTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~--~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp   77 (114)
                      ++..||+.+||+||++||||+++..  +.....|..  +...+..+.+++.+.+++..   +...+|+.+++||+++++|
T Consensus        77 ve~gEs~~eaa~REl~EEtGl~~~~~~l~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~---~~~~~e~~~~~Wf~ld~l~  153 (202)
T d2fmla2          77 VNRNESTEDSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEP---LIAGDDAKEVHWFNLERHG  153 (202)
T ss_dssp             CCTTSCHHHHHHHHHHHHHCCCCCGGGEEEEEEECCTTSSTTSSEEEEEEEEECCCCC---CCCCTTEEEEEEEEEEEET
T ss_pred             ecCCCCHHHHhhhhhHhhcCeeeecceeeeeeecccCCccccceEEEEEEEEEeCCCC---cCCCcceeeEEEEeHHHCc
Confidence            5788999999999999999999864  222222221  12334455555544444332   3346799999999999999


Q ss_pred             CCch
Q psy13065         78 SSRK   81 (114)
Q Consensus        78 ~~~~   81 (114)
                      ....
T Consensus       154 ~~~~  157 (202)
T d2fmla2         154 QHIT  157 (202)
T ss_dssp             TEEE
T ss_pred             chhc
Confidence            7544

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.5e-11  Score=83.18  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=48.9

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--eecceeee--eccCC-eEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IAEDSYLE--TTYND-QLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDL   76 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~~~~y~~--~~~~~-~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~l   76 (114)
                      ++..||+.+||+||++||||+++...  +....+..  ..... ....+|++.....+.  .+...+|+.+++||+++++
T Consensus        50 ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~e~  127 (153)
T d1xsba_          50 VEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVKDYDV--EIRLSHEHQAYRWLGLEEA  127 (153)
T ss_dssp             CCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEEEESSSCEEEEEEEEEEESCTTC--CCCCCTTEEEEEEECHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeecccccCceeEEEEEEEEEeeccc--ccCCCcceeEEEEEEHHHH
Confidence            57899999999999999999998752  22211111  11122 233444443332222  3334579999999999987


Q ss_pred             CCCc
Q psy13065         77 PSSR   80 (114)
Q Consensus        77 p~~~   80 (114)
                      +...
T Consensus       128 ~~~~  131 (153)
T d1xsba_         128 CQLA  131 (153)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            7654

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.13  E-value=2.3e-11  Score=81.44  Aligned_cols=74  Identities=12%  Similarity=0.145  Sum_probs=45.8

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeeccee-eeeccCCe---EE-EEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSY-LETTYNDQ---LT-RLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y-~~~~~~~~---~~-~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      ++..||+.+||+||++||||+++..  +++...+ ........   .+ .+|.+...    ...+...+|+.+++|++++
T Consensus        49 ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~e~~~~~W~~~~  124 (147)
T d2azwa1          49 IEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQTAYYNPGYFYVANTW----RQLSEPLERTNTLHWVAPE  124 (147)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEE----EECSSCC-CCSEEEEECHH
T ss_pred             eCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeeeccCCceEEEEEEEEEEEec----cccCCCCccceEEEEEEHH
Confidence            5789999999999999999999875  3332222 11111221   12 22333222    1224445789999999999


Q ss_pred             CCCCC
Q psy13065         75 DLPSS   79 (114)
Q Consensus        75 ~lp~~   79 (114)
                      +++.+
T Consensus       125 e~~~~  129 (147)
T d2azwa1         125 EAVRL  129 (147)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.9e-11  Score=82.90  Aligned_cols=75  Identities=13%  Similarity=0.099  Sum_probs=48.3

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eee-cceeeeeccCC--eE--EEEEEEeccCCCCccCcCCcCcccceEEEeCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIA-EDSYLETTYND--QL--TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIG   74 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~-~~~y~~~~~~~--~~--~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id   74 (114)
                      ++..||+.+||+||++||||+++..  .+. ...|.....++  ..  ..+|... ...  ...+. .+|+++++|++++
T Consensus        40 ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~Ev~~~~W~~~~  115 (153)
T d1hzta_          40 PQLGESNEDAVIRRCRYELGVEITPPESIYPDFRYRATDPSGIVENEVCPVFAAR-TTS--ALQIN-DDEVMDYQWCDLA  115 (153)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCBSCCEEEETTCEEEEECTTSCEEEEECCEEEEE-BCS--CCCCC-TTTEEEEEEECHH
T ss_pred             eecCCcHHHHHHHHHHHHcCceeecccceeccccccccccccccceeEEEEEEEe-eCC--CccCC-hhheeEEEEeeHH
Confidence            5789999999999999999999874  222 23343333222  11  1223332 222  23443 4799999999999


Q ss_pred             CCCCCc
Q psy13065         75 DLPSSR   80 (114)
Q Consensus        75 ~lp~~~   80 (114)
                      +|+...
T Consensus       116 el~~~i  121 (153)
T d1hzta_         116 DVLHGI  121 (153)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987654

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.11  E-value=3.4e-11  Score=82.91  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=46.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeeee--ecce--eee-------------eccCCeEEEEEEEeccCCCCccC----cC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHLI--AEDS--YLE-------------TTYNDQLTRLYLIPGVPIDFKFA----PQ   60 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~li--~~~~--y~~-------------~~~~~~~~~lfv~~~~~~~~~~~----p~   60 (114)
                      +|..||+.+||+||++||||+++....  ....  +..             .....+..+.|++.-...+....    ..
T Consensus        47 ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  126 (165)
T d1jkna_          47 IDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGS  126 (165)
T ss_dssp             CCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCEEEECCHHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCSSCSSS
T ss_pred             EcCCCChhHHHHHHHHHhhccccccccccccccccccccceeeceeeeeecCCccceeeEEEEEEEeCCCceeecCCCCC
Confidence            688999999999999999999987521  1111  100             00111233334433222221111    11


Q ss_pred             CcCcccceEEEeCCCCCCCc
Q psy13065         61 TRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus        61 ~~~EI~~i~Wf~id~lp~~~   80 (114)
                      ...|+++++||++++++...
T Consensus       127 ~~~E~~~~~W~~~~el~~~i  146 (165)
T d1jkna_         127 EKPEFGEWSWVTPEQLIDLT  146 (165)
T ss_dssp             SCCCEEEEEEECTTHHHHHS
T ss_pred             CCCeeEEeEECCHHHHHHhc
Confidence            23499999999999998654

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.11  E-value=2.4e-11  Score=81.08  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=44.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeeee--ee--cceeeeeccCCeEEEEEEEeccCCCCc-------cCcCCcCcccceEE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSHL--IA--EDSYLETTYNDQLTRLYLIPGVPIDFK-------FAPQTRGEIKACQW   70 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~l--i~--~~~y~~~~~~~~~~~lfv~~~~~~~~~-------~~p~~~~EI~~i~W   70 (114)
                      .+..||+.+||+||++||||+++...  +.  ...+............+.... .....       ......+|+.+++|
T Consensus        32 ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~E~~~~~W  110 (152)
T d1k2ea_          32 VEHNETPIEAVKREFEEETGIVVEPIGFTYGIIDENAVERPMPLVILEEVVKY-PEETHIHFDLIYLVKRVGGDLKNGEW  110 (152)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSEEEEECCCCCCCBSSSEEECCCCSEEEEEEEEC-SSCEEEEEEEEEEEEEEEECCCSCEE
T ss_pred             EeCCccHHHHHHHHHHHHHCCceeeeEEEEEEeccccccCcceEEEEEEEEec-CCCceEEEEEeEeeecCCCCcceEEE
Confidence            57899999999999999999999752  11  111111111111111111111 10000       00113468999999


Q ss_pred             EeCCCCCCCc
Q psy13065         71 FPIGDLPSSR   80 (114)
Q Consensus        71 f~id~lp~~~   80 (114)
                      +++++++.+.
T Consensus       111 ~~~~el~~~~  120 (152)
T d1k2ea_         111 IDVREIDRIE  120 (152)
T ss_dssp             EEGGGGGGSC
T ss_pred             eEHHHHhhCC
Confidence            9999998654

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=3.1e-11  Score=86.61  Aligned_cols=79  Identities=16%  Similarity=0.256  Sum_probs=46.2

Q ss_pred             cc-cCCCHHHHHHHHhhhhhCceeeeeeecceeeee-ccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 ME-EIMMNIISEAKQVLEETGFDSSHLIAEDSYLET-TYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~-~~es~~eaAvREv~EETGl~v~~li~~~~y~~~-~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      +| ..||+++||+||++|||||.+..+.....+... ....+..++|++..............+|..++.|++++++..+
T Consensus        74 ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~~~~~~~fla~~~~~~~~~~~~~eee~i~v~w~~~~e~~~~  153 (202)
T d1mqea_          74 LDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEADMTMGWYPIAEAARR  153 (202)
T ss_dssp             CCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTBCCCEEEEEEEEEEECCC----------CEEEEEHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHhhccccccccceEeeeeeccCccCCcEEEEEEEEeccccCCCCCCCccceEEEEEEEHHHHHHH
Confidence            45 589999999999999999999864322222211 1223456667766543222222223345668999999998665


Q ss_pred             c
Q psy13065         80 R   80 (114)
Q Consensus        80 ~   80 (114)
                      .
T Consensus       154 i  154 (202)
T d1mqea_         154 V  154 (202)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=7e-11  Score=80.24  Aligned_cols=76  Identities=9%  Similarity=-0.035  Sum_probs=45.6

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--e--eecceeeeec--c----CCeEEEEEEEeccCCCCccCcCCcCcccceEEE
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--L--IAEDSYLETT--Y----NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWF   71 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--l--i~~~~y~~~~--~----~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf   71 (114)
                      ++..||+.+||+||++||||+++..  +  +....+....  .    ..+.+.+++........  .....+|+.+++|+
T Consensus        53 ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~E~~e~~W~  130 (160)
T d1ryaa_          53 VQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEE--LLLPDEQHDDYRWL  130 (160)
T ss_dssp             CCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEEEESSBTTBSSSCEEEEEEEEEEECCGGG--CCCCSSSEEEEEEE
T ss_pred             ccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEEeccccccCCCcceEEEEEEEEEEecCCC--ccCCCcceEEEEEE
Confidence            4678999999999999999999873  1  2222222111  0    11222222222222221  22345799999999


Q ss_pred             eCCCCCCC
Q psy13065         72 PIGDLPSS   79 (114)
Q Consensus        72 ~id~lp~~   79 (114)
                      ++++|+.+
T Consensus       131 ~~~el~~~  138 (160)
T d1ryaa_         131 TSDALLAS  138 (160)
T ss_dssp             CHHHHHHC
T ss_pred             EHHHhhcC
Confidence            99988644

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.02  E-value=4.8e-11  Score=81.90  Aligned_cols=75  Identities=9%  Similarity=0.033  Sum_probs=46.5

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeecc-CCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTY-NDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPS   78 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~-~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~   78 (114)
                      ++..||+.+||+||++|||||++..  ++....+..... ......+|.+.. .+  ...+ ..+|+.+++|++++++..
T Consensus        66 ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~-~~~Ev~~~~W~~~eel~~  141 (162)
T d2o5fa1          66 VQSGETYEEAFRREAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRS-DA--TPIF-NPNDISGGEWLTPEHLLA  141 (162)
T ss_dssp             CBTTCCHHHHHHHHHHHHHCCCGGGSEEEEEEEECTTTSSCSSEEEEEEEEC-SS--CCCC-CTTTCSEEEEECHHHHHH
T ss_pred             ccCCCChhhhhhhhhhheeCcceeeEEEEEEEEeccccccceEEEEEEEEec-CC--CccC-ChhHeeEEEEeeHHHHHH
Confidence            5678999999999999999999874  221111111111 123344454442 22  2223 247999999999988765


Q ss_pred             Cc
Q psy13065         79 SR   80 (114)
Q Consensus        79 ~~   80 (114)
                      ..
T Consensus       142 ~~  143 (162)
T d2o5fa1         142 RI  143 (162)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.96  E-value=3.6e-11  Score=85.17  Aligned_cols=77  Identities=13%  Similarity=0.039  Sum_probs=48.0

Q ss_pred             cccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeEEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          2 MEEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQLTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         2 ~~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      +|..||+.+||+||++|||||+.+.  +++.-...... .+..++-|++.-....... ....+|+.++.|+++++|...
T Consensus        70 ~e~~E~~~~aAlRE~~EE~Gl~~~~~~~lg~l~~~~~~-~~~~V~p~v~~l~~~~~~~-~~~~~EV~~v~~vpl~~L~~~  147 (187)
T d1nqza_          70 LDAGETPTQAALREAQEEVALDPAAVTLLGELDDVFTP-VGFHVTPVLGRIAPEALDT-LRVTPEVAQIITPTLAELRAV  147 (187)
T ss_dssp             CCTTCCHHHHHHHHHHHHHCCCGGGCEEEEECCCEEET-TTEEEEEEEEEECGGGGGG-CCCCTTEEEEECCBHHHHHHS
T ss_pred             cccCCchhHHHHHHHHHhhccccceeEEeecccceeec-cccEEEEEEEEECCccccc-cccCCcceEEEeccHHHHhcC
Confidence            5788999999999999999999875  34322222222 2344444443211111111 223579999999999888654


Q ss_pred             c
Q psy13065         80 R   80 (114)
Q Consensus        80 ~   80 (114)
                      .
T Consensus       148 ~  148 (187)
T d1nqza_         148 P  148 (187)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=4.4e-10  Score=80.93  Aligned_cols=81  Identities=11%  Similarity=-0.041  Sum_probs=50.3

Q ss_pred             CcccCCCHHHHHHHHhhhhhCceeeeeeecceeee-eccCCeEEEEEEEeccCCCC-cc-CcCCcCcccceEEEeCCCCC
Q psy13065          1 MMEEIMMNIISEAKQVLEETGFDSSHLIAEDSYLE-TTYNDQLTRLYLIPGVPIDF-KF-APQTRGEIKACQWFPIGDLP   77 (114)
Q Consensus         1 ~~~~~es~~eaAvREv~EETGl~v~~li~~~~y~~-~~~~~~~~~lfv~~~~~~~~-~~-~p~~~~EI~~i~Wf~id~lp   77 (114)
                      ++|..|||++||+||++|||||.+..+.....+.. .....+.+++|++....... .. ...+.+|..++.|++++++.
T Consensus        98 ~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~spg~~~e~~~~f~a~~~~~~~~~~~~~~de~E~iev~~v~~~e~~  177 (209)
T d1g0sa_          98 MIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAY  177 (209)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTTBCCEEEEEEEECCGGGCC--------CCSCEEEEEEHHHHH
T ss_pred             ecCCCcCHHHHHHHHHHhhhcccccceeeccccccCCcccCCceEEEEEEEecccccCCCCCCCCCceeEEEEEeHHHHH
Confidence            36789999999999999999999886533223322 22234567777764221111 11 11233566689999999887


Q ss_pred             CCch
Q psy13065         78 SSRK   81 (114)
Q Consensus        78 ~~~~   81 (114)
                      .+..
T Consensus       178 ~~i~  181 (209)
T d1g0sa_         178 QWVE  181 (209)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=1.1e-09  Score=77.55  Aligned_cols=78  Identities=10%  Similarity=0.006  Sum_probs=48.1

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeeeeeecceee-eeccCCeEEEEEEEeccCCCCc-cCcCCcCcccceEEEeCCCCCCCc
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSHLIAEDSYL-ETTYNDQLTRLYLIPGVPIDFK-FAPQTRGEIKACQWFPIGDLPSSR   80 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~li~~~~y~-~~~~~~~~~~lfv~~~~~~~~~-~~p~~~~EI~~i~Wf~id~lp~~~   80 (114)
                      .+.|++++||+||++||||+.+..+.....+. ......+.+++|++........ ......+|..++.|++++++..+.
T Consensus        86 ~d~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~spG~~~e~~~~f~a~~~~~~~~~~~~~~e~E~i~v~~~~~~e~~~~i  165 (189)
T d1viua_          86 LDNDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQALEMI  165 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTBCCEEEEEEEECCTTCC---------CCEEEEEEEHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHhhCCcceEEEEcceeecCccccCceEEEEEEEECCcccccCCCCCCCccEEEEEEEHHHHHHHH
Confidence            45788999999999999999988643322332 1222346677787754332211 112234577799999999877654

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=3.5e-08  Score=74.02  Aligned_cols=82  Identities=12%  Similarity=-0.015  Sum_probs=49.3

Q ss_pred             CcccCCCHHHHHHHHhhhhhCceeeee--e------------ecc---eeeee---ccC--C-e-EEEEEEEeccCC--C
Q psy13065          1 MMEEIMMNIISEAKQVLEETGFDSSHL--I------------AED---SYLET---TYN--D-Q-LTRLYLIPGVPI--D   54 (114)
Q Consensus         1 ~~~~~es~~eaAvREv~EETGl~v~~l--i------------~~~---~y~~~---~~~--~-~-~~~lfv~~~~~~--~   54 (114)
                      |++..||+.+||+||+.||||+.+...  +            ...   .|...   ..+  . . ....|.+.....  .
T Consensus       158 ~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprntd~aw~etva~~~h~~~~~~~  237 (292)
T d1q33a_         158 MVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIM  237 (292)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTT
T ss_pred             cCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCCCCCCEEEEEEEEEEEcccccc
Confidence            468899999999999999999987631  0            011   11111   011  1 1 122233322111  1


Q ss_pred             CccCcCCcCcccceEEEeCCCCCCCchh
Q psy13065         55 FKFAPQTRGEIKACQWFPIGDLPSSRKE   82 (114)
Q Consensus        55 ~~~~p~~~~EI~~i~Wf~id~lp~~~~~   82 (114)
                      ....++..+|+.+++|+++++++.+..+
T Consensus       238 ~~~~l~~~dEa~~v~W~~vde~~~L~~~  265 (292)
T d1q33a_         238 DNLMLEAGDDAGKVKWVDINDKLKLYAS  265 (292)
T ss_dssp             TTCCCCCCTTCSEEEEEECCTTCCCSTT
T ss_pred             cccccCCCCchheEEEEEhhccccchhh
Confidence            2233455689999999999999987544

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.33  E-value=2.2e-07  Score=66.09  Aligned_cols=78  Identities=10%  Similarity=0.096  Sum_probs=45.2

Q ss_pred             cccCCC-HHHHHHHHhhhhhCceeee--eeecceeeee---ccCCeEEEEEEEeccCCCC-------ccCc-CCcCcccc
Q psy13065          2 MEEIMM-NIISEAKQVLEETGFDSSH--LIAEDSYLET---TYNDQLTRLYLIPGVPIDF-------KFAP-QTRGEIKA   67 (114)
Q Consensus         2 ~~~~es-~~eaAvREv~EETGl~v~~--li~~~~y~~~---~~~~~~~~lfv~~~~~~~~-------~~~p-~~~~EI~~   67 (114)
                      ++..|+ .++||.||++||||+++..  ++.. .|...   ......+..|+++.++...       .... ....|+.+
T Consensus        62 ~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~~-~~~~~~~~~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~  140 (196)
T d1u20a1          62 VDTRDISLEEGLKRELEEELGPALATVEVTED-DYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMG  140 (196)
T ss_dssp             ECTTTSCHHHHHHHHHHHHHCGGGGGCCCCGG-GEEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEE
T ss_pred             cCCCCCcHHHHHHHHHHHHhCccceeEEEEee-EEEEeccCCCCCEEEEEEEEEEcchHHhhhhhhcccccCcCCccccc
Confidence            466785 5789999999999999885  3222 22221   1222333333333332110       0111 11258999


Q ss_pred             eEEEeCCCCCCCc
Q psy13065         68 CQWFPIGDLPSSR   80 (114)
Q Consensus        68 i~Wf~id~lp~~~   80 (114)
                      +.|+++.+|+...
T Consensus       141 ~~wVPl~~L~d~~  153 (196)
T d1u20a1         141 LIRVPLYTLRDRV  153 (196)
T ss_dssp             EEECCCSBCTTSS
T ss_pred             eeEEeHHHhcccc
Confidence            9999999987644

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.01  E-value=3.5e-06  Score=54.84  Aligned_cols=67  Identities=10%  Similarity=-0.079  Sum_probs=36.7

Q ss_pred             CCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCe-EEEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCCchh
Q psy13065          6 MMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQ-LTRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSSRKE   82 (114)
Q Consensus         6 es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~-~~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~~~~   82 (114)
                      +...++++||++||+|+++..  .++.  +.+.+.... .+.+|.+....+        ..+..+++|+++++|..+..+
T Consensus        43 ~~~~e~l~rel~ee~gi~v~~~~~l~~--~~H~fsh~~~~~~~~~~~~~~~--------~~~~~~~~Wv~~~el~~~~~p  112 (127)
T d1rrqa2          43 ADGKEKLEQMVGEQYGLQVELTEPIVS--FEHAFSHLVWQLTVFPGRLVHG--------GPVEEPYRLAPEDELKAYAFP  112 (127)
T ss_dssp             TCCHHHHHHTTC----CEEEECSCCEE--EEEECSSEEEEEEEEEEEEECC--------SCCCTTEEEEEGGGGGGSCCC
T ss_pred             CCCHHHHHHHhhhhcceEEEecccccc--ceEecCCeEEEEEEEEEEECCC--------CccccceEEeeHHHHhHCCCC
Confidence            344899999999999999985  2221  112222222 244455543321        124467899999999877653

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.031  Score=35.48  Aligned_cols=73  Identities=12%  Similarity=0.028  Sum_probs=40.7

Q ss_pred             ccCCCHHHHHHHHhhhhhCceeee--eeecceeeeeccCCeE-EEEEEEeccCCCCccCcCCcCcccceEEEeCCCCCCC
Q psy13065          3 EEIMMNIISEAKQVLEETGFDSSH--LIAEDSYLETTYNDQL-TRLYLIPGVPIDFKFAPQTRGEIKACQWFPIGDLPSS   79 (114)
Q Consensus         3 ~~~es~~eaAvREv~EETGl~v~~--li~~~~y~~~~~~~~~-~~lfv~~~~~~~~~~~p~~~~EI~~i~Wf~id~lp~~   79 (114)
                      ++.|+..++|.||..+|.++.+..  ......+.+...+.+. +++|.+....+    .+ ...+..+.+|++++++..+
T Consensus        52 ~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fsH~~~~~~v~~~~~~~~----~~-~~~~~~~~~W~~~~el~~~  126 (142)
T d1x51a1          52 EPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQ----TP-VTTVPPGARWLTQEEFHTA  126 (142)
T ss_dssp             CSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCSSCEEEEEEEEEECSSC----CC-CCCCCTTEEEEEHHHHHHS
T ss_pred             cCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccCCcceEEEEEEEEEeCC----Cc-ccccCccCEEeeHHHcccc
Confidence            456778888888877777766553  2111222222223332 44455543221    12 1357788999999877654


Q ss_pred             c
Q psy13065         80 R   80 (114)
Q Consensus        80 ~   80 (114)
                      .
T Consensus       127 ~  127 (142)
T d1x51a1         127 A  127 (142)
T ss_dssp             C
T ss_pred             C
Confidence            3