Psyllid ID: psy13068

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950
MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKRLGSTTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARRI
cccHHHHHHHHHccccEEEEEEEccccHHHHHccccccEEEEEcccccccccccccccEEEcccccccEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccEEEEEcccccccHHHHHHccccEEEEEEEcccccccccccccccEEcccccccEEccccEEEccccEEEEccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEcccHHHHHHHHHHHHHcccccccccccccccccccccccEEcccEEEEccccEEEEEccccccccccccccccccccccccccccccEEEEccccccEEEEEEEcccccccccccccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccccHHHHcccccccHHHHHHHHHcccccccEEEEEccEEEEEcccccEEEEEccccccccEEEEEEcccEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccHHHHcccccccccccEEEEEEccccccccHHcccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHcccEEEEcccccccccccccccccccEEEEEEcccEEEEEEccccccccc
cccHHHHHHHHHHcccEEEEEEccccccHHHcccEEEEEEEEccccccccccccccccEEEccccccEEEccccEEcccccccEEEEcccEEEcccccccccccccccEEEEEEEccccEEEcccEEEccccccccccccccccccccccccHHHHHHccccccEEEEEcccEEEEcEEEEEEEcccccEcHHHHHHHHHHHHHcccEEEEEEcccccHHHHHccEEEEEEEEccccccccccccccccEEEccccccEEEccccEEccccEEEEcccccccccccccHccccHcccccHHcccccEEEEEEcccccccccccccccEHHHHHHHHccHHHHHHHHcccccccccccccccEEEccccccEEEccccEEcccccEEEccccccccccccccccccHcccccHHcccccEEEEEEEEEEEEEccccHHHHHHHHHHcccccEEcccHHHHHHHcccccHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccEcccccccccHHHHHHHHHHHHHHHccccccccccHHHHccHHHHccccccEcccccccHHHHHHHHHHHccccccEEEEcHHHHEEccccccccEEEEcccccccEEEEEccEEEEEEEcccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccEEEEHHHHHHHccHHHHHHcccccccEEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEEHccccccccHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccEcccccccccHHHHHHHHcHHHHHHcccccHHHHHHHHHHHccccccEEEEcHHHHEEccccccccEEEEcccccccEEEEEccEEEEEEEcccHEEEEcc
MTTYEEFFYqneerdgirctwnvwpsskleasrlvmpvgclyqplkekpdlpplqyepllcmrNQCRAIlnplcqgcvsSTLEALWLKSIFFQaedgirdrsfgfhnssVNIVRSvghgvinhfgfrvgdesktsrsfrdgilhdnniynftplfkeclhppngrvlewngtrvaHSTLTVQLSLETLKISMTTYEEFFYQneerdgirctwnvwpsskleasrlvmpvgclyqplkekpdlpplqyepllcmrnqcrailnplcqvdyksklwvcnfcfqrnafppqyaaiteqhqpaelhpqfttieytipvsqcfpkyplrslpvflPFLIQFVFFLAITHLInqvgspnlpplqyepllcmrnqcrailnplcqvdyksklwvcnfcfqrnafppqyaaiteqhqpaelhpqfttieyTIPLLYSITyitendnvirrneihikpricglqeenieekfddssqeeyfeaedqegqgdsqedEEMEEQriedeedqedgneeIEDERETKMEEECqkfghynkddphsfqlpenfqmypQFMYHLRRSQFLQvfnnspdetsYYRTLLIhlphysrfqflqvfnnspdetsyYRHVLMREDLSQSLIMIQpvlysygfngppvpvlldtssikpdciLLMDTFFQLLIFhgeepirshndihkgnNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKlccnatgkpsHVLIAIefaqpspmlkAQKRlgsttaahgapipqggrgcIQFIthyqapsgekkVRVTTIARNWADattqldhissgfDQEAAAVIMGRMVVnraeqddgpdvmRWADRTLIRLCQkfghynkddphsfqlpenfqmypQFMYHLRRSQFLQvfnnspdetsyYRHVLMREDLSQSLIMIQpvlysygfngppvpvlldtssikpdciLLMDTFFQLLIFHgevsnarri
MTTYEEFFyqneerdgirctWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIkpricglqeeNIEEKFDDSSQEEYFEAedqegqgdsqedEEMEEqriedeedqedgneEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKRLGSTTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNraeqddgpdvMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHgevsnarri
MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFeaedqegqgdsqedeemeeqriedeedqedgneeiedereTKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKRLGSTTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARRI
*****EFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQ******************************************************************************QLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQ*********************IPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGE*******
**TYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGF********************NIYNF************************HST*TVQ*****LKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKRL****************GCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFG*************ENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARRI
MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIE*******************************************************EEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKRLGSTTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARRI
*TTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDE*KTSRSFRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKRLGSTTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARRI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQGCVSSTLEALWLKSIFFQAEDGIRDRSFGFHNSSVNIVRSVGHGVINHFGFRVGDESKTSRSFRDGILHDNNIYNFTPLFKECLHPPNGRVLEWNGTRVAHSTLTVQLSLETLKISMTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITHLINQVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDxxxxxxxxxxxxxxxxxxxxxECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQPSPMLKAQKRLGSTTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARRI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query950 2.2.26 [Sep-21-2011]
Q5R9P3765 Protein transport protein yes N/A 0.176 0.219 0.705 1e-83
Q15436765 Protein transport protein yes N/A 0.176 0.219 0.705 1e-83
Q01405765 Protein transport protein yes N/A 0.176 0.219 0.700 2e-83
Q05AS9765 Protein transport protein yes N/A 0.204 0.253 0.710 2e-83
Q5ZK03767 Protein transport protein no N/A 0.204 0.252 0.715 4e-83
A2VDL8768 Protein transport protein yes N/A 0.176 0.218 0.705 4e-83
Q7SZE5765 Protein transport protein yes N/A 0.212 0.264 0.684 5e-83
Q9D662767 Protein transport protein no N/A 0.176 0.219 0.705 3e-81
Q3SZN2767 Protein transport protein no N/A 0.176 0.219 0.700 4e-81
Q15437767 Protein transport protein no N/A 0.176 0.219 0.700 9e-81
>sp|Q5R9P3|SC23A_PONAB Protein transport protein Sec23A OS=Pongo abelii GN=SEC23A PE=2 SV=1 Back     alignment and function desciption
 Score =  311 bits (798), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 168/197 (85%)

Query: 748 HGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIM 807
           H APIPQGGRG IQF+T YQ  SG++++RVTTIARNWADA TQ+ +I++ FDQEAAA++M
Sbjct: 467 HNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILM 526

Query: 808 GRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRR 867
            R+ + RAE ++GPDV+RW DR LIRLCQKFG Y+KDDP SF+  E F +YPQFM+HLRR
Sbjct: 527 ARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRR 586

Query: 868 SQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDC 927
           S FLQVFNNSPDE+SYYRH  MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SSI  D 
Sbjct: 587 SSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADR 646

Query: 928 ILLMDTFFQLLIFHGEV 944
           ILLMDTFFQ+LI+HGE 
Sbjct: 647 ILLMDTFFQILIYHGET 663
Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Pongo abelii (taxid: 9601)
>sp|Q15436|SC23A_HUMAN Protein transport protein Sec23A OS=Homo sapiens GN=SEC23A PE=1 SV=2 Back     alignment and function description
>sp|Q01405|SC23A_MOUSE Protein transport protein Sec23A OS=Mus musculus GN=Sec23a PE=1 SV=2 Back     alignment and function description
>sp|Q05AS9|SC23A_XENTR Protein transport protein Sec23A OS=Xenopus tropicalis GN=sec23a PE=2 SV=1 Back     alignment and function description
>sp|Q5ZK03|SC23A_CHICK Protein transport protein Sec23A OS=Gallus gallus GN=SEC23A PE=2 SV=1 Back     alignment and function description
>sp|A2VDL8|SC23A_BOVIN Protein transport protein Sec23A OS=Bos taurus GN=SEC23A PE=2 SV=1 Back     alignment and function description
>sp|Q7SZE5|SC23A_DANRE Protein transport protein Sec23A OS=Danio rerio GN=sec23a PE=2 SV=1 Back     alignment and function description
>sp|Q9D662|SC23B_MOUSE Protein transport protein Sec23B OS=Mus musculus GN=Sec23b PE=2 SV=1 Back     alignment and function description
>sp|Q3SZN2|SC23B_BOVIN Protein transport protein Sec23B OS=Bos taurus GN=SEC23B PE=2 SV=1 Back     alignment and function description
>sp|Q15437|SC23B_HUMAN Protein transport protein Sec23B OS=Homo sapiens GN=SEC23B PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query950
195145836756 GL24389 [Drosophila persimilis] gi|19410 0.302 0.379 0.605 1e-111
332375224776 unknown [Dendroctonus ponderosae] 0.303 0.371 0.561 1e-103
91086195765 PREDICTED: similar to protein transport 0.170 0.211 0.802 4e-92
328788157775 PREDICTED: protein transport protein Sec 0.2 0.245 0.796 1e-91
383864350768 PREDICTED: protein transport protein Sec 0.2 0.247 0.796 2e-91
383864348775 PREDICTED: protein transport protein Sec 0.2 0.245 0.796 2e-91
195568513479 GD19806 [Drosophila simulans] gi|1941981 0.176 0.350 0.771 3e-91
350396069775 PREDICTED: protein transport protein Sec 0.2 0.245 0.791 3e-91
289743311788 vesicle coat complex COPII subunit SEC23 0.198 0.239 0.781 4e-91
307197826768 Protein transport protein Sec23A [Harpeg 0.2 0.247 0.786 4e-91
>gi|195145836|ref|XP_002013896.1| GL24389 [Drosophila persimilis] gi|194102839|gb|EDW24882.1| GL24389 [Drosophila persimilis] Back     alignment and taxonomy information
 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/337 (60%), Positives = 244/337 (72%), Gaps = 50/337 (14%)

Query: 656 EEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNA 715
           + PIRSH+DIHK N K+ K A KH++ LALRAA  GH++DIYSCALDQTGLLEMK  CN+
Sbjct: 320 KHPIRSHHDIHKDNVKFMKKAIKHFDALALRAATNGHSVDIYSCALDQTGLLEMKQLCNS 379

Query: 716 TGKPSHVLIAIEFAQP---------------------------SPMLK-AQKRLG----- 742
           TG   H+++   F                              SP +   +  +G     
Sbjct: 380 TG--GHMVMGDSFNSSLFKQTFQRVFARDSRNDLKMAFNATLESPSVSDVEIGMGNTVQW 437

Query: 743 -------STTAA--------HGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADA 787
                  S+T A        H APIPQGGRGCIQFIT YQ PSG++++RVTT+ARNWADA
Sbjct: 438 KLCTLNPSSTVAYFFEVVNQHAAPIPQGGRGCIQFITQYQHPSGQRRIRVTTLARNWADA 497

Query: 788 TTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPH 847
           TT + HIS+GFDQEAAAV+M RMVV RAE D+GPD++RW DR LIRLCQKFG Y KDDP+
Sbjct: 498 TTNVHHISAGFDQEAAAVLMARMVVYRAETDEGPDILRWVDRQLIRLCQKFGEYTKDDPN 557

Query: 848 SFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSY 907
           SF+L +NF ++PQFMYHLRRSQFLQVFNNSPDET++YRH+LMREDL+QSLIMIQP+LYSY
Sbjct: 558 SFRLSQNFSLFPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSY 617

Query: 908 GFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEV 944
            FNGPP PVLLDT+SI+ D ILLMDTFFQ+LI+HGE 
Sbjct: 618 SFNGPPEPVLLDTASIQADRILLMDTFFQILIYHGET 654

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332375224|gb|AEE62753.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|91086195|ref|XP_971475.1| PREDICTED: similar to protein transport protein sec23 [Tribolium castaneum] gi|270009872|gb|EFA06320.1| hypothetical protein TcasGA2_TC009191 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328788157|ref|XP_392515.2| PREDICTED: protein transport protein Sec23A-like isoform 1 [Apis mellifera] gi|380012521|ref|XP_003690328.1| PREDICTED: protein transport protein Sec23A [Apis florea] Back     alignment and taxonomy information
>gi|383864350|ref|XP_003707642.1| PREDICTED: protein transport protein Sec23A isoform 2 [Megachile rotundata] Back     alignment and taxonomy information
>gi|383864348|ref|XP_003707641.1| PREDICTED: protein transport protein Sec23A isoform 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|195568513|ref|XP_002102258.1| GD19806 [Drosophila simulans] gi|194198185|gb|EDX11761.1| GD19806 [Drosophila simulans] Back     alignment and taxonomy information
>gi|350396069|ref|XP_003484429.1| PREDICTED: protein transport protein Sec23A-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|289743311|gb|ADD20403.1| vesicle coat complex COPII subunit SEC23 [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|307197826|gb|EFN78937.1| Protein transport protein Sec23A [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query950
FB|FBgn0262125773 Sec23 "Sec23 ortholog (S. cere 0.206 0.253 0.770 6.6e-167
UNIPROTKB|E1C3Y5765 SEC23A "Protein transport prot 0.206 0.256 0.714 1.4e-150
ZFIN|ZDB-GENE-040426-2823765 sec23a "Sec23 homolog A (S. ce 0.212 0.264 0.684 2.3e-150
UNIPROTKB|Q15436765 SEC23A "Protein transport prot 0.206 0.256 0.709 4.9e-150
MGI|MGI:1349635765 Sec23a "SEC23A (S. cerevisiae) 0.206 0.256 0.704 4.9e-150
RGD|1309103765 Sec23a "Sec23 homolog A (S. ce 0.206 0.256 0.704 4.9e-150
UNIPROTKB|A2VDL8768 SEC23A "Protein transport prot 0.206 0.255 0.709 6.2e-150
UNIPROTKB|F1MVW5767 SEC23A "Protein transport prot 0.206 0.255 0.709 6.2e-150
UNIPROTKB|F6V2R0767 SEC23A "Uncharacterized protei 0.206 0.255 0.709 6.2e-150
UNIPROTKB|J9P1Q5765 SEC23A "Uncharacterized protei 0.206 0.256 0.709 6.2e-150
FB|FBgn0262125 Sec23 "Sec23 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 849 (303.9 bits), Expect = 6.6e-167, Sum P(3) = 6.6e-167
 Identities = 151/196 (77%), Positives = 178/196 (90%)

Query:   748 HGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIM 807
             H APIPQGGRGCIQF T YQ PSG++++RVTT+ARNWADAT+ + HIS+GFDQEAAAV+M
Sbjct:   475 HAAPIPQGGRGCIQFSTQYQHPSGQRRIRVTTLARNWADATSNVHHISAGFDQEAAAVLM 534

Query:   808 GRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRR 867
              RMVV RAE D+GPD++RW DR LIRLCQKFG Y+KDDP+SF+L +NF ++PQFMYHLRR
Sbjct:   535 ARMVVYRAETDEGPDILRWVDRQLIRLCQKFGEYSKDDPNSFRLSQNFSLFPQFMYHLRR 594

Query:   868 SQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDC 927
             SQFLQVFNNSPDET++YRH+LMREDL+QSLIMIQP+LYSY FNGPP PVLLDT+SI+ D 
Sbjct:   595 SQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFNGPPEPVLLDTASIQADR 654

Query:   928 ILLMDTFFQLLIFHGE 943
             ILLMDTFFQ+LI+HGE
Sbjct:   655 ILLMDTFFQILIYHGE 670
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS
GO:0005096 "GTPase activator activity" evidence=ISS
GO:0007030 "Golgi organization" evidence=IGI;IMP
GO:0030134 "ER to Golgi transport vesicle" evidence=TAS
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005795 "Golgi stack" evidence=IDA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0030127 "COPII vesicle coat" evidence=IEA
GO:0035293 "chitin-based larval cuticle pattern formation" evidence=IMP
GO:0008363 "larval chitin-based cuticle development" evidence=IMP
GO:0050774 "negative regulation of dendrite morphogenesis" evidence=IMP
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0035149 "lumen formation, open tracheal system" evidence=IMP
GO:0016203 "muscle attachment" evidence=IMP
GO:0030011 "maintenance of cell polarity" evidence=IMP
GO:0071711 "basement membrane organization" evidence=IMP
GO:0008360 "regulation of cell shape" evidence=IMP
GO:0040003 "chitin-based cuticle development" evidence=IMP
GO:0034394 "protein localization to cell surface" evidence=IMP
GO:0003331 "positive regulation of extracellular matrix constituent secretion" evidence=IMP
GO:0022409 "positive regulation of cell-cell adhesion" evidence=IMP
GO:0048081 "positive regulation of cuticle pigmentation" evidence=IMP
GO:0007029 "endoplasmic reticulum organization" evidence=IMP
UNIPROTKB|E1C3Y5 SEC23A "Protein transport protein Sec23A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2823 sec23a "Sec23 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q15436 SEC23A "Protein transport protein Sec23A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1349635 Sec23a "SEC23A (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309103 Sec23a "Sec23 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A2VDL8 SEC23A "Protein transport protein Sec23A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MVW5 SEC23A "Protein transport protein Sec23A" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F6V2R0 SEC23A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P1Q5 SEC23A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query950
PLN00162761 PLN00162, PLN00162, transport protein sec23; Provi 4e-96
COG5047755 COG5047, SEC23, Vesicle coat complex COPII, subuni 4e-75
PLN00162761 PLN00162, PLN00162, transport protein sec23; Provi 4e-52
PLN00162761 PLN00162, PLN00162, transport protein sec23; Provi 4e-50
COG5047755 COG5047, SEC23, Vesicle coat complex COPII, subuni 8e-40
pfam04815103 pfam04815, Sec23_helical, Sec23/Sec24 helical doma 2e-38
COG5047755 COG5047, SEC23, Vesicle coat complex COPII, subuni 7e-38
PLN00162 761 PLN00162, PLN00162, transport protein sec23; Provi 2e-30
cd11287121 cd11287, Sec23_C, C-terminal Actin depolymerizatio 1e-26
cd11287121 cd11287, Sec23_C, C-terminal Actin depolymerizatio 1e-26
cd01478267 cd01478, Sec23-like, Sec23-like: Protein and membr 4e-24
PLN00162761 PLN00162, PLN00162, transport protein sec23; Provi 4e-21
COG5047755 COG5047, SEC23, Vesicle coat complex COPII, subuni 4e-20
pfam04815103 pfam04815, Sec23_helical, Sec23/Sec24 helical doma 6e-20
COG5047 755 COG5047, SEC23, Vesicle coat complex COPII, subuni 4e-18
PLN00162 761 PLN00162, PLN00162, transport protein sec23; Provi 2e-14
pfam0481039 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger 5e-14
pfam0481039 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger 5e-14
pfam04811241 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain 2e-13
COG5047 755 COG5047, SEC23, Vesicle coat complex COPII, subuni 8e-10
pfam0803386 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich dom 1e-09
cd01468239 cd01468, trunk_domain, trunk domain 2e-09
cd1128088 cd11280, gelsolin_like, Tandemly repeated domains 3e-05
cd1128088 cd11280, gelsolin_like, Tandemly repeated domains 2e-04
TIGR009271096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 3e-04
pfam04147809 pfam04147, Nop14, Nop14-like family 4e-04
pfam07133164 pfam07133, Merozoite_SPAM, Merozoite surface prote 5e-04
pfam03247106 pfam03247, Prothymosin, Prothymosin/parathymosin f 6e-04
pfam07133164 pfam07133, Merozoite_SPAM, Merozoite surface prote 8e-04
COG5028861 COG5028, COG5028, Vesicle coat complex COPII, subu 0.001
pfam04111356 pfam04111, APG6, Autophagy protein Apg6 0.001
pfam03247106 pfam03247, Prothymosin, Prothymosin/parathymosin f 0.002
COG5028861 COG5028, COG5028, Vesicle coat complex COPII, subu 0.002
pfam05285317 pfam05285, SDA1, SDA1 0.002
COG5137279 COG5137, COG5137, Histone chaperone involved in ge 0.003
COG5137279 COG5137, COG5137, Histone chaperone involved in ge 0.003
pfam04006613 pfam04006, Mpp10, Mpp10 protein 0.003
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information 
 Score =  319 bits (820), Expect = 4e-96
 Identities = 107/195 (54%), Positives = 144/195 (73%), Gaps = 1/195 (0%)

Query: 749 GAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMG 808
             P P G +  +QF+T YQ  +G+ ++RVTT+ R W + +   + + +GFDQEAAAV+M 
Sbjct: 469 SNPQPPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVEGS-SSEELVAGFDQEAAAVVMA 527

Query: 809 RMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRS 868
           R+  ++ E ++  D  RW DR LIRLC KFG Y KDDP SF+L  NF +YPQFM++LRRS
Sbjct: 528 RLASHKMETEEEFDATRWLDRALIRLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRS 587

Query: 869 QFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDCI 928
           QF+QVFNNSPDET+Y+R +L RE+++ SL+MIQP L SY FNGPP PVLLD +SI  D I
Sbjct: 588 QFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGPPEPVLLDVASIAADRI 647

Query: 929 LLMDTFFQLLIFHGE 943
           LL+D++F ++IFHG 
Sbjct: 648 LLLDSYFSVVIFHGS 662

Length = 761
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|200443 cd11287, Sec23_C, C-terminal Actin depolymerization factor-homology domain of Sec23 Back     alignment and domain information
>gnl|CDD|200443 cd11287, Sec23_C, C-terminal Actin depolymerization factor-homology domain of Sec23 Back     alignment and domain information
>gnl|CDD|238755 cd01478, Sec23-like, Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|218277 pfam04815, Sec23_helical, Sec23/Sec24 helical domain Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|215083 PLN00162, PLN00162, transport protein sec23; Provisional Back     alignment and domain information
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger Back     alignment and domain information
>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger Back     alignment and domain information
>gnl|CDD|147125 pfam04811, Sec23_trunk, Sec23/Sec24 trunk domain Back     alignment and domain information
>gnl|CDD|227380 COG5047, SEC23, Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|219707 pfam08033, Sec23_BS, Sec23/Sec24 beta-sandwich domain Back     alignment and domain information
>gnl|CDD|238745 cd01468, trunk_domain, trunk domain Back     alignment and domain information
>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in gelsolin, severin, villin, and related proteins Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM) Back     alignment and domain information
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family Back     alignment and domain information
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM) Back     alignment and domain information
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6 Back     alignment and domain information
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family Back     alignment and domain information
>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing [Transcription / Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 950
PLN00162761 transport protein sec23; Provisional 100.0
KOG1986|consensus745 100.0
COG5047755 SEC23 Vesicle coat complex COPII, subunit SEC23 [I 100.0
KOG1984|consensus1007 100.0
KOG1985|consensus887 100.0
COG5028861 Vesicle coat complex COPII, subunit SEC24/subunit 100.0
KOG1986|consensus745 100.0
PTZ003951560 Sec24-related protein; Provisional 100.0
COG5047755 SEC23 Vesicle coat complex COPII, subunit SEC23 [I 100.0
PLN00162761 transport protein sec23; Provisional 100.0
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 100.0
cd01479244 Sec24-like Sec24-like: Protein and membrane traffi 99.96
cd01468239 trunk_domain trunk domain. COPII-coated vesicles c 99.96
PF04811243 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: I 99.95
PF04815103 Sec23_helical: Sec23/Sec24 helical domain; InterPr 99.83
KOG1984|consensus1007 99.37
KOG1985|consensus887 99.3
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 99.28
COG5028861 Vesicle coat complex COPII, subunit SEC24/subunit 99.22
PF0481040 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: 99.08
PF0803396 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterP 98.91
PTZ003951560 Sec24-related protein; Provisional 97.81
PF0062676 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gel 97.08
cd01478267 Sec23-like Sec23-like: Protein and membrane traffi 95.56
smart0026290 GEL Gelsolin homology domain. Gelsolin/severin/vil 94.67
PRK13685326 hypothetical protein; Provisional 91.35
PF04815103 Sec23_helical: Sec23/Sec24 helical domain; InterPr 89.84
KOG0443|consensus 827 87.12
KOG0444|consensus 1255 86.8
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.6e-113  Score=1039.52  Aligned_cols=580  Identities=42%  Similarity=0.725  Sum_probs=506.0

Q ss_pred             HhhccCCCeeeeeccccCCCHHHHhhcccceEEEeccCCCCCCCCCCCCcccccccccccceeeccceEeCCCCeeEecC
Q psy13068        199 FYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNF  278 (950)
Q Consensus       199 ~~~~e~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~~~~~p~~~~~p~rC~~~~C~aylNP~~~~d~~g~~w~C~~  278 (950)
                      +.+.|+.+|||+|||+||+++.+++++++|+||+|+||++.+++|.++++|+||++  |+|||||||++|++|++|+||+
T Consensus         3 ~~~~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~~vp~v~~~pvRC~~--CraylNPf~~~d~~~~~W~C~~   80 (761)
T PLN00162          3 FAELEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLPELPVLPYDPLRCRT--CRAVLNPYCRVDFQAKIWICPF   80 (761)
T ss_pred             hhhhcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCCCCCcCCCCCCccCC--CcCEECCceEEecCCCEEEccC
Confidence            34788999999999999999999999999999999999998889999999999999  9999999999999999999999


Q ss_pred             CCCCCCCchhhhhccccCCCCcccCCCceEEEEcc---CCCCCCCCCCCCcceeecccceEEEEcchhh-----hhh--h
Q psy13068        279 CFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIP---VSQCFPKYPLRSLPVFLPFLIQFVFFLAITH-----LIN--Q  348 (950)
Q Consensus       279 C~~~N~~p~~y~~i~d~~~~~El~~~~~tvEy~~p---~~~~~p~~p~~~~pv~l~~~~~fviD~s~~~-----lk~--~  348 (950)
                      |+.+|.||++|..+++.+.|+||.|+++||||++|   ...+.|       |+|+     ||||+|..+     +|+  +
T Consensus        81 C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~~~~~~~~p-------p~fv-----FvID~s~~~~~l~~lk~sl~  148 (761)
T PLN00162         81 CFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPPGSGGAPSP-------PVFV-----FVVDTCMIEEELGALKSALL  148 (761)
T ss_pred             CCCCCCCchHhcccCccCCChhhcCCceeEEEECCCCCCCCCCC-------cEEE-----EEEecchhHHHHHHHHHHHH
Confidence            99999999999988889999999999999999999   444444       9999     999999944     555  7


Q ss_pred             cCCCCCCCCCeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCCCCcceEEEeeeccc
Q psy13068        349 VGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPLLY  428 (950)
Q Consensus       349 ~~l~~Lp~~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  428 (950)
                      .+|+.||++++|||||||   +.||+|++....|+++                                           
T Consensus       149 ~~L~~LP~~a~VGlITF~---s~V~~~~L~~~~~~~~-------------------------------------------  182 (761)
T PLN00162        149 QAIALLPENALVGLITFG---THVHVHELGFSECSKS-------------------------------------------  182 (761)
T ss_pred             HHHHhCCCCCEEEEEEEC---CEEEEEEcCCCCCcce-------------------------------------------
Confidence            889999999999999999   9999999986555444                                           


Q ss_pred             eeeeecccccceecccccccccccCCcccccccccCCCchHHHHHhhhccCCCCCchhhHHHhhhhcccccccCCchhhh
Q psy13068        429 SITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGNEEIE  508 (950)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~pq~~~~~~~~~~~~~~d~~~~~~~~~  508 (950)
                                                   +||.|.|+++.+|+.++.+   +..+.                 .      
T Consensus       183 -----------------------------~Vf~g~k~~t~~~l~~~l~---l~~~~-----------------~------  207 (761)
T PLN00162        183 -----------------------------YVFRGNKEVSKDQILEQLG---LGGKK-----------------R------  207 (761)
T ss_pred             -----------------------------EEecCCccCCHHHHHHHhc---ccccc-----------------c------
Confidence                                         4455666666666655421   10000                 0      


Q ss_pred             HHHhhhhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhhCCCCCccceeeecc
Q psy13068        509 DERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFN  588 (950)
Q Consensus       509 ~~~~~~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~  588 (950)
                                 +.++.-..+.++.+.+|.             .++||+|++||++.   |+++||+|++ ++|++     
T Consensus       208 -----------~~~~~~~~~~~~~~~~p~-------------~~~fLvpl~e~~~~---i~~lLe~L~~-~~~~~-----  254 (761)
T PLN00162        208 -----------RPAGGGIAGARDGLSSSG-------------VNRFLLPASECEFT---LNSALEELQK-DPWPV-----  254 (761)
T ss_pred             -----------cccccccccccccccCCC-------------ccceeEEHHHHHHH---HHHHHHhhhc-ccccc-----
Confidence                       000000000000011111             26899999999987   9999999999 89998     


Q ss_pred             CCCCCccccccccchHHHHHHHHhhccc----ccc-cccCCCCceEeccccccCCceeecccchhhhhhccCCCcccccc
Q psy13068        589 NSPDETSYYRHVLMREDLSQSLIMIQPV----LYS-YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHN  663 (950)
Q Consensus       589 ~s~~~~~~~r~~G~~~Al~~A~~ll~p~----~~~-~~f~gGp~~v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~  663 (950)
                        ++++++.||+|  +||++|..+|+..    +.+ ++|+|||+       |.|||+|+-++         .++++|+|+
T Consensus       255 --~~~~rp~r~tG--~AL~vA~~lL~~~~~~~gGrI~~F~sgpp-------T~GpG~v~~r~---------~~~~~rsh~  314 (761)
T PLN00162        255 --PPGHRPARCTG--AALSVAAGLLGACVPGTGARIMAFVGGPC-------TEGPGAIVSKD---------LSEPIRSHK  314 (761)
T ss_pred             --CCCCCCCccHH--HHHHHHHHHHhhccCCCceEEEEEeCCCC-------CCCCceeeccc---------ccccccCcc
Confidence              77889999999  9999999999832    223 57788888       99999999554         477899999


Q ss_pred             ccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEEcCCCCC-------------
Q psy13068        664 DIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQ-------------  730 (950)
Q Consensus       664 d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~y~~F~~-------------  730 (950)
                      |++|+++++++++.+||++||++|+++||+||||+++.+|+||+||+.|++.|||  .+++|++|+.             
T Consensus       315 di~k~~~~~~~~a~~fY~~la~~~~~~gisvDlF~~s~dqvglaem~~l~~~TGG--~v~~~~sF~~~~f~~~l~r~~~r  392 (761)
T PLN00162        315 DLDKDAAPYYKKAVKFYEGLAKQLVAQGHVLDVFACSLDQVGVAEMKVAVERTGG--LVVLAESFGHSVFKDSLRRVFER  392 (761)
T ss_pred             ccccchhhhcchHHHHHHHHHHHHHHcCceEEEEEccccccCHHHHhhhHhhcCc--EEEEeCCcChHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999999  9999999976             


Q ss_pred             -----------------CCCCeeEeeecCC--------------------Cc----------------CCCCCCC-----
Q psy13068        731 -----------------PSPMLKAQKRLGS--------------------TT----------------AAHGAPI-----  752 (950)
Q Consensus       731 -----------------~S~GlkV~~~~Gs--------------------Tt----------------~~~de~L-----  752 (950)
                                       ||+||||+++||+                    |+                ++++++.     
T Consensus       393 ~~~~~~~~gf~a~~~VrtS~glkv~g~~G~~~s~~~~~~~vsd~~iG~g~T~~w~l~~l~~~~t~av~f~~~~~~~~~~~  472 (761)
T PLN00162        393 DGEGSLGLSFNGTFEVNCSKDVKVQGAIGPCASLEKKGPSVSDTEIGEGGTTAWKLCGLDKKTSLAVFFEVANSGQSNPQ  472 (761)
T ss_pred             cccccccccceeEEEEEecCCeEEeeeEcCcccccccCCccccccccCCCCceeeecCcCcCCEEEEEEEEccccccCCC
Confidence                             9999999999992                    10                3444333     


Q ss_pred             CCCCceEEEEEEeeecCCCcEEEEEEeeeecccccCCCHHHHHhccCHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q psy13068        753 PQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLI  832 (950)
Q Consensus       753 ~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~l~~~pvts~l~~v~~s~D~eAi~~llaR~av~~~~~~~l~d~r~~L~~~lv  832 (950)
                      .++..+|||||++||+++|+|||||||++++|++ ++++.+++++|||||++++|||+|+.+++++++.|+++||+++|+
T Consensus       473 ~~~~~~~iQ~a~lYt~~~G~rRiRV~T~~~~~~~-~~~~~~v~~~fDqeA~a~llaR~av~k~~~~~~~d~~r~ld~~li  551 (761)
T PLN00162        473 PPGQQFFLQFLTRYQHSNGQTRLRVTTVTRRWVE-GSSSEELVAGFDQEAAAVVMARLASHKMETEEEFDATRWLDRALI  551 (761)
T ss_pred             CCCceEEEEEEEEEEcCCCCEEEEEEccccCccC-CCCHHHHHHhcCHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            4556799999999999999999999999996543 337889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccCCCCCccccCcccccHHHHHHHHHhcccccCCCCChhHHHHHHHHHcCCCHHhHHhccccceEEeccCCC
Q psy13068        833 RLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGP  912 (950)
Q Consensus       833 ~il~~Yr~~~~~~~~qliLPesLklLP~yi~~LlKS~~Lr~~n~spDeR~~~~~~l~s~~v~~~l~~iYP~L~slh~~g~  912 (950)
                      +++++|+.|.++.+++|+||++||+||+|||||+||++|+++|+|||||+|+|++++++++.+++.||||+|++||++++
T Consensus       552 ~~~~~f~~Yrk~~~~s~~Lp~~~~~lP~f~~~LrRS~~l~~~n~spDera~~r~~l~~~~~~~sl~mI~P~L~sy~~~~~  631 (761)
T PLN00162        552 RLCSKFGDYRKDDPSSFRLSPNFSLYPQFMFNLRRSQFVQVFNNSPDETAYFRMMLNRENVTNSLVMIQPTLISYSFNGP  631 (761)
T ss_pred             HHHHHHhhhcccCCccccCCHHHHHHHHHHHHHhhhhhccCCCCCchHHHHHHHHHhcCCHHHHHHhhCCeEEEecCCCC
Confidence            99999999999889999999999999999999999999999999999999999999999999999999999999999889


Q ss_pred             CcccccccccccCCeEEEEECCCEEEEEEcCCCCCCC
Q psy13068        913 PVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARR  949 (950)
Q Consensus       913 P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V~~w~  949 (950)
                      |++++||.++|++|||||||+|++|+||+|++|++||
T Consensus       632 P~pv~Ld~~si~~d~ilLLD~~f~vvi~~G~~ia~w~  668 (761)
T PLN00162        632 PEPVLLDVASIAADRILLLDSYFSVVIFHGSTIAQWR  668 (761)
T ss_pred             CcceecchhhccCCceEEEeCCCEEEEEecCcccchh
Confidence            9999999999999999999999999999999999998

>KOG1986|consensus Back     alignment and domain information
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1984|consensus Back     alignment and domain information
>KOG1985|consensus Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1986|consensus Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion] Back     alignment and domain information
>PLN00162 transport protein sec23; Provisional Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>cd01468 trunk_domain trunk domain Back     alignment and domain information
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>KOG1984|consensus Back     alignment and domain information
>KOG1985|consensus Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion] Back     alignment and domain information
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF08033 Sec23_BS: Sec23/Sec24 beta-sandwich domain; InterPro: IPR012990 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>PTZ00395 Sec24-related protein; Provisional Back     alignment and domain information
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) [] Back     alignment and domain information
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles Back     alignment and domain information
>smart00262 GEL Gelsolin homology domain Back     alignment and domain information
>PRK13685 hypothetical protein; Provisional Back     alignment and domain information
>PF04815 Sec23_helical: Sec23/Sec24 helical domain; InterPro: IPR006900 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex [] Back     alignment and domain information
>KOG0443|consensus Back     alignment and domain information
>KOG0444|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query950
3efo_A765 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-84
3eg9_A764 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-84
2nup_A769 Crystal Structure Of The Human Sec23a24A HETERODIME 1e-84
1m2o_A768 Crystal Structure Of The Sec23-Sar1 Complex Length 7e-66
2qtv_A772 Structure Of Sec23-Sar1 Complexed With The Active F 1e-65
2yrc_A59 Solution Structure Of The Zf-Sec23_sec24 From Human 2e-18
2yrc_A59 Solution Structure Of The Zf-Sec23_sec24 From Human 2e-18
2yrd_A59 Solution Structure Of The Zf-Sec23_sec24 From Human 6e-18
2yrd_A59 Solution Structure Of The Zf-Sec23_sec24 From Human 6e-18
1pcx_A810 Crystal Structure Of The Copii Coat Subunit, Sec24, 3e-06
1m2v_B926 Crystal Structure Of The Yeast Sec2324 HETERODIMER 3e-06
3eh1_A751 Crystal Structure Of The Human Copii-Coat Protein S 1e-04
3eh1_A 751 Crystal Structure Of The Human Copii-Coat Protein S 8e-04
3egd_B748 Crystal Structure Of The Mammalian Copii-Coat Prote 1e-04
2nup_B753 Crystal Structure Of The Human Sec23a24A HETERODIME 1e-04
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 765 Back     alignment and structure 
Iteration: 1

 Score =  311 bits (797), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 168/197 (85%)
Query: 748 HGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEAAAVIM 807
           H APIPQGGRG IQF+T YQ  SG++++RVTTIARNWADA TQ+ +I++ FDQEAAA++M
Sbjct: 467 HNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILM 526
Query: 808 GRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRR 867
            R+ + RAE ++GPDV+RW DR LIRLCQKFG Y+KDDP SF+  E F +YPQFM+HLRR
Sbjct: 527 ARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRR 586
Query: 868 SQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSSIKPDC 927
           S FLQVFNNSPDE+SYYRH  MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SSI  D 
Sbjct: 587 SSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADR 646
Query: 928 ILLMDTFFQLLIFHGEV 944
           ILLMDTFFQ+LI+HGE 
Sbjct: 647 ILLMDTFFQILIYHGET 663
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF MEMBRIN Length = 764 Back     alignment and structure
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 769 Back     alignment and structure
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex Length = 768 Back     alignment and structure
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 772 Back     alignment and structure
>pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Length = 59 Back     alignment and structure
>pdb|2YRC|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Length = 59 Back     alignment and structure
>pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Mutant V69a Length = 59 Back     alignment and structure
>pdb|2YRD|A Chain A, Solution Structure Of The Zf-Sec23_sec24 From Human Sec23a Mutant V69a Length = 59 Back     alignment and structure
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810 Back     alignment and structure
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926 Back     alignment and structure
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 Back     alignment and structure
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751 Back     alignment and structure
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748 Back     alignment and structure
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query950
2nut_A769 Protein transport protein SEC23A; human copii SEC2 2e-56
2nut_A769 Protein transport protein SEC23A; human copii SEC2 1e-42
2nut_A769 Protein transport protein SEC23A; human copii SEC2 3e-26
2nut_A769 Protein transport protein SEC23A; human copii SEC2 2e-24
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 1e-19
2nut_A 769 Protein transport protein SEC23A; human copii SEC2 5e-09
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 3e-52
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 6e-32
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 6e-27
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 1e-17
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 4e-15
1m2o_A 768 SEC23, protein transport protein SEC23, SEC23P; zi 4e-09
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-45
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-23
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-19
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 1e-13
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 8e-10
3efo_B770 SEC24 related gene family, member D; copii, coat p 1e-41
3efo_B770 SEC24 related gene family, member D; copii, coat p 1e-21
3efo_B770 SEC24 related gene family, member D; copii, coat p 1e-17
3efo_B770 SEC24 related gene family, member D; copii, coat p 1e-11
3efo_B770 SEC24 related gene family, member D; copii, coat p 4e-08
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 2e-39
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 1e-20
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 2e-17
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 1e-10
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 9e-08
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 2e-39
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 1e-20
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 1e-15
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 2e-10
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 1e-09
3eh1_A751 Protein transport protein SEC24B; copii coat prote 1e-36
3eh1_A751 Protein transport protein SEC24B; copii coat prote 5e-23
3eh1_A751 Protein transport protein SEC24B; copii coat prote 3e-14
3eh1_A751 Protein transport protein SEC24B; copii coat prote 9e-14
3eh1_A751 Protein transport protein SEC24B; copii coat prote 1e-07
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 2e-26
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 2e-26
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
3cx5_F146 Cytochrome B-C1 complex subunit 6; complex III, el 3e-04
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 4e-04
3nzj_F288 Proteasome component C1; ubiquitin, protein degrad 6e-04
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
 Score =  208 bits (529), Expect = 2e-56
 Identities = 139/201 (69%), Positives = 168/201 (83%)

Query: 743 STTAAHGAPIPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQLDHISSGFDQEA 802
                H APIPQGGRG IQF+T YQ  SG++++RVTTIARNWADA TQ+ +I++ FDQEA
Sbjct: 466 EVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEA 525

Query: 803 AAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFM 862
           AA++M R+ + RAE ++GPDV+RW DR LIRLCQKFG Y+KDDP SF+  E F +YPQFM
Sbjct: 526 AAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFM 585

Query: 863 YHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYSYGFNGPPVPVLLDTSS 922
           +HLRRS FLQVFNNSPDE+SYYRH  MR+DL+QSLIMIQP+LY+Y F+GPP PVLLD+SS
Sbjct: 586 FHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSS 645

Query: 923 IKPDCILLMDTFFQLLIFHGE 943
           I  D ILLMDTFFQ+LI+HGE
Sbjct: 646 ILADRILLMDTFFQILIYHGE 666
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751 Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Length = 59 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F* 1p84_F* 2ibz_H* 1kyo_F* Length = 146 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F* Length = 288 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query950
2nut_A769 Protein transport protein SEC23A; human copii SEC2 100.0
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 100.0
3eh1_A751 Protein transport protein SEC24B; copii coat prote 100.0
3efo_B770 SEC24 related gene family, member D; copii, coat p 100.0
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 100.0
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 100.0
1pcx_A 810 Protein transport protein SEC24; 2.50A {Saccharomy 100.0
2nut_A769 Protein transport protein SEC23A; human copii SEC2 100.0
1m2o_A768 SEC23, protein transport protein SEC23, SEC23P; zi 100.0
3eh1_A751 Protein transport protein SEC24B; copii coat prote 100.0
3efo_B770 SEC24 related gene family, member D; copii, coat p 100.0
3eh2_A766 Protein transport protein SEC24C; copii-coat prote 100.0
1m2v_B926 SEC24, protein transport protein SEC24, SEC24P, SE 100.0
1pcx_A810 Protein transport protein SEC24; 2.50A {Saccharomy 100.0
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 99.48
2yrc_A59 Protein transport protein SEC23A; zinc binding, co 99.34
1kcq_A104 Gelsolin, brevin, ADF, AGEL; alpha-beta structure, 95.57
1svq_A114 Severin; actin-binding; NMR {Dictyostelium discoid 94.96
2fh1_A344 Gelsolin; calcium, contractIle protein; 1.55A {Hom 93.26
3fg7_A398 Villin-1; actin binding protein, gelsolin, actin c 93.07
1j72_A347 Macrophage capping protein; actin, human, CAP G, G 92.88
3fg6_A371 Adseverin, scinderin; C-terminus of adseverin, act 92.32
1d0n_A729 Horse plasma gelsolin; mixed alpha-beta structure, 89.63
1j72_A 347 Macrophage capping protein; actin, human, CAP G, G 83.11
2fh1_A 344 Gelsolin; calcium, contractIle protein; 1.55A {Hom 82.07
3fg6_A 371 Adseverin, scinderin; C-terminus of adseverin, act 81.01
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
Probab=100.00  E-value=1.3e-108  Score=1002.83  Aligned_cols=583  Identities=50%  Similarity=0.839  Sum_probs=502.9

Q ss_pred             chhhHHHHhhccCCCeeeeeccccCCCHHHHhhcccceEEEeccCCCCCCCCCCCCcccccccccccceeeccceEeCCC
Q psy13068        192 MTTYEEFFYQNEERDGIRCTWNVWPSSKLEASRLVMPVGCLYQPLKEKPDLPPLQYEPLLCMRNQCRAILNPLCQVDYKS  271 (950)
Q Consensus       192 ~~~~~~~~~~~e~~~~iR~t~~~~P~t~~~a~k~~~Plg~~~~Pl~~~~~~p~~~~~p~rC~~~~C~aylNP~~~~d~~g  271 (950)
                      |..|....+.+|+++|||+|||.||.++.+++++++|+|++|+||++.+++|+++++|+||++..|+|||||||++|.+|
T Consensus         5 ~~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~~p~v~~~pvRC~~~~CrayiNPf~~~~~~~   84 (769)
T 2nut_A            5 MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRA   84 (769)
T ss_dssp             --CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSCCCCBCSCCCBCSSTTCCCBCCTTSEEETTT
T ss_pred             ccchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCCCCCcCCCCCCcCCCCCCCeEECCceEEeCCC
Confidence            33466666677899999999999999999999999999999999998888999999999998877999999999999999


Q ss_pred             CeeEecCCCCCCCCchhhhhccccCCCCcccCCCceEEEEccCCCCCCCCCCCCcceeecccceEEEEcchhh-----hh
Q psy13068        272 KLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTIPVSQCFPKYPLRSLPVFLPFLIQFVFFLAITH-----LI  346 (950)
Q Consensus       272 ~~w~C~~C~~~N~~p~~y~~i~d~~~~~El~~~~~tvEy~~p~~~~~p~~p~~~~pv~l~~~~~fviD~s~~~-----lk  346 (950)
                      ++|+||||+.+|++|++|+.+.+.+.||||.|+++||||++|+++|.|       |+|+     ||||+|..+     ++
T Consensus        85 ~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~p~p-------p~~v-----FvIDvS~~a~~l~~l~  152 (769)
T 2nut_A           85 KLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGPQMP-------LIFL-----YVVDTCMEDEDLQALK  152 (769)
T ss_dssp             TEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSCCCC-------CEEE-----EEEECCSCHHHHHHHH
T ss_pred             CEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCCCCC-------CEEE-----EEEECCccHHHHHHHH
Confidence            999999999999999999988888899999888999999999988666       9999     999999943     44


Q ss_pred             h--hcCCCCCCCCCeeeeEeeccccceEEeecccccCcccceeeeccccCCCCchhhhhhhhccCCcCCCCCcceEEEee
Q psy13068        347 N--QVGSPNLPPLQYEPLLCMRNQCRAILNPLCQVDYKSKLWVCNFCFQRNAFPPQYAAITEQHQPAELHPQFTTIEYTI  424 (950)
Q Consensus       347 ~--~~~l~~Lp~~~~vglit~~~~~s~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  424 (950)
                      +  +..|+.||++++|||||||   +.||+|++..+.|                                          
T Consensus       153 ~si~~~L~~Lp~~~~VGlITf~---~~v~~y~l~~~~~------------------------------------------  187 (769)
T 2nut_A          153 ESMQMSLSLLPPTALVGLITFG---RMVQVHELGCEGI------------------------------------------  187 (769)
T ss_dssp             HHHHHHHTTSCTTCEEEEEEES---SEEEEEESSCCSS------------------------------------------
T ss_pred             HHHHHHHHhCCCCceEEEEEeC---CEEEEEeCCCCCC------------------------------------------
Confidence            4  6788999999999999999   9999999986443                                          


Q ss_pred             eccceeeeecccccceecccccccccccCCcccccccccCCCchHHHHHhhhccCCCCCchhhHHHhhhhcccccccCCc
Q psy13068        425 PLLYSITYITENDNVIRRNEIHIKPRICGLQEENIEEKFDDSSQEEYFEAEDQEGQGDSQEDEEMEEQRIEDEEDQEDGN  504 (950)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~pq~~~~~~~~~~~~~~d~~~~~  504 (950)
                                                    +++|||.|.|+++.+|+.++..   ++.|.             .|.    
T Consensus       188 ------------------------------~~~~vf~G~k~~~~~q~~~ml~---v~d~~-------------~~~----  217 (769)
T 2nut_A          188 ------------------------------SKSYVFRGTKDLSAKQLQEMLG---LSKVP-------------VTQ----  217 (769)
T ss_dssp             ------------------------------CEEEEEETTSCCCSHHHHHHHC----------------------------
T ss_pred             ------------------------------ccceeecCCccccHHHHHHHhC---CCCcc-------------ccc----
Confidence                                          3456677888887776644311   00000             000    


Q ss_pred             hhhhHHHhhhhHHHHHhhcCCCCCCCCCCCCCccccccccccccccccccccccCCCCcchHHHHHHHhhCCCCCcccee
Q psy13068        505 EEIEDERETKMEEECQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFL  584 (950)
Q Consensus       505 ~~~~~~~~~~~~~~~~~~g~~~~~~p~s~~lp~~~~~~~~~~~~l~rs~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~l  584 (950)
                         .     .        .+  -+|+  |++|.              +.||+|+++|++.   |+++|++|+. |+|++ 
T Consensus       218 ---~-----~--------~~--~~~~--f~~p~--------------~~~lv~~~e~~~~---i~~lLe~L~~-~~~~~-  258 (769)
T 2nut_A          218 ---A-----T--------RG--PQVQ--QPPPS--------------NRFLQPVQKIDMN---LTDLLGELQR-DPWPV-  258 (769)
T ss_dssp             -------------------------------CC--------------CSSSEEHHHHHHH---HHHHHHHCCC-CSSCC-
T ss_pred             ---c-----c--------cc--cccc--CCCcc--------------cceeeeHHHHHHH---HHHHHHhccc-ccccc-
Confidence               0     0        00  0011  11221              6789999999877   9999999999 88988 


Q ss_pred             eeccCCCCCccccccccchHHHHHHHHhhcc----cccc-cccCCCCceEeccccccCCceeecccchhhhhhccCCCcc
Q psy13068        585 QVFNNSPDETSYYRHVLMREDLSQSLIMIQP----VLYS-YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPI  659 (950)
Q Consensus       585 qvf~~s~~~~~~~r~~G~~~Al~~A~~ll~p----~~~~-~~f~gGp~~v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~i  659 (950)
                            ++++++.||+|  +||++|+.+|+.    .+++ ++|+||++       |.|||+|+.+++         ++++
T Consensus       259 ------~~~~~~~~a~G--~Al~~A~~lL~~~~~~~GGrI~~F~sg~p-------t~GpG~l~~r~~---------~~~~  314 (769)
T 2nut_A          259 ------PQGKRPLRSSG--VALSIAVGLLECTFPNTGARIMMFIGGPA-------TQGPGMVVGDEL---------KTPI  314 (769)
T ss_dssp             ------CTTBCCCCCHH--HHHHHHHHHHHHHSCSSCCEEEEEESSCC-------CSSSSCCSCSBT---------TSCC
T ss_pred             ------cCCCCCccchH--HHHHHHHHHHhhcccCCCcEEEEEeCCCC-------CCCCCCCcCccc---------cccc
Confidence                  77889999999  999999999993    2333 46666666       999999996654         6679


Q ss_pred             ccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCchhhhhhhhccCCCcEEEEcCCCCC---------
Q psy13068        660 RSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGLLEMKLCCNATGKPSHVLIAIEFAQ---------  730 (950)
Q Consensus       660 rs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdlatl~~L~~~TGG~~~v~~y~~F~~---------  730 (950)
                      |+|.|++|+++++++++.+||++||++|+++||+||+|+++.+|+|++||+.|++.|||  .+++|++|+.         
T Consensus       315 rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG--~~~~~~~F~~~~~~~~l~~  392 (769)
T 2nut_A          315 RSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGG--YMVMGDSFNTSLFKQTFQR  392 (769)
T ss_dssp             CCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSC--CEEEESCSSSHHHHHHHHH
T ss_pred             ccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCc--eEEEcCCCchhhHHHHHHH
Confidence            99999999889999999999999999999999999999999999999999999999999  9999999976         


Q ss_pred             ---------------------CCCCeeEeeecCC--------------------C------------c----CCCCCC--
Q psy13068        731 ---------------------PSPMLKAQKRLGS--------------------T------------T----AAHGAP--  751 (950)
Q Consensus       731 ---------------------~S~GlkV~~~~Gs--------------------T------------t----~~~de~--  751 (950)
                                           ||+||+|+++||+                    |            +    |+++++  
T Consensus       393 ~~~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~  472 (769)
T 2nut_A          393 VFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHN  472 (769)
T ss_dssp             TTCBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC----
T ss_pred             HHhhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCccc
Confidence                                 9999999999984                    1            0    455554  


Q ss_pred             --CCCCCceEEEEEEeeecCCCcEEEEEEeeeecccccCCCH---HHHHhccCHHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy13068        752 --IPQGGRGCIQFITHYQAPSGEKKVRVTTIARNWADATTQL---DHISSGFDQEAAAVIMGRMVVNRAEQDDGPDVMRW  826 (950)
Q Consensus       752 --L~~~~~~yIQ~AlLYT~~~GeRRIRV~Tl~l~~~pvts~l---~~v~~s~D~eAi~~llaR~av~~~~~~~l~d~r~~  826 (950)
                        ++++..+|||+|++||+++|+|||||||+++   |+++++   +++|+++|+||++++|+|+|+.+++++++.|+|+|
T Consensus       473 ~~l~~~~~~~~Q~a~lYt~~~G~rRiRV~T~~~---~~t~~~~~~~~v~~~~Dqea~~~llar~a~~~~~~~~~~d~~~~  549 (769)
T 2nut_A          473 APIPQGGRGAIQFVTQYQHSSGQRRIRVTTIAR---NWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRW  549 (769)
T ss_dssp             ------CCEEEEEEEEEEETTSCEEEEEEEEEE---CBCCGGGHHHHHHHTBCHHHHHHHHHHHHHHHHTTC---CHHHH
T ss_pred             cccCCCCeEEEEEEEEEECCCCCEEEEEEeecc---cccCCcccHHHHHHhcCHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence              5566889999999999999999999999999   777776   59999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcccCCCCCccccCcccccHHHHHHHHHhcccccCCCCChhHHHHHHHHHcCCCHHhHHhccccceEE
Q psy13068        827 ADRTLIRLCQKFGHYNKDDPHSFQLPENFQMYPQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQPVLYS  906 (950)
Q Consensus       827 L~~~lv~il~~Yr~~~~~~~~qliLPesLklLP~yi~~LlKS~~Lr~~n~spDeR~~~~~~l~s~~v~~~l~~iYP~L~s  906 (950)
                      |++++++++++|+.|.++.+++|+||++||+||+|||+|+||++|++++++||||+|+++.++++++.+++.||||+||+
T Consensus       550 ld~~li~l~~~~~~Yrk~~~~sl~lp~~lkllP~~~~~L~ks~~l~~~~~spDer~~~~~~l~~~~~~~~~~~iyP~L~~  629 (769)
T 2nut_A          550 LDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSSFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYA  629 (769)
T ss_dssp             HHHHHHHHHHHHCBCCTTCGGGCBCCTTTTTHHHHHHHHHHSTTTCCTTSCHHHHHHHHHHHTTCCHHHHHHHHSCEEEE
T ss_pred             HHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHhcccccCCCCCCccHHHHHHHHHHcCCHHHHHHhhcCEEEe
Confidence            99999999999999999889999999999999999999999999999899999999999999999999999999999999


Q ss_pred             eccCCCCcccccccccccCCeEEEEECCCEEEEEEcCCCCCCC
Q psy13068        907 YGFNGPPVPVLLDTSSIKPDCILLMDTFFQLLIFHGEVSNARR  949 (950)
Q Consensus       907 lh~~g~P~~v~LS~esL~~dgIyLLD~g~~I~IwvG~~V~~w~  949 (950)
                      +|.+++|++++||.++|++|||||||+|++|+||+|++|++||
T Consensus       630 ~~~~~~P~~v~ls~~~l~~~gi~LLD~g~~i~i~~G~~v~~w~  672 (769)
T 2nut_A          630 YSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWR  672 (769)
T ss_dssp             ECSSSSCEECCSSGGGCCTTCEEEEECSSEEEEEECHHHHHHH
T ss_pred             ccCCCCCCceeCCHHHccCCCEEEEECCCEEEEEECCcchHHH
Confidence            9987889999999999999999999999999999999999997
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Back     alignment and structure
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Back     alignment and structure
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Back     alignment and structure
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Back     alignment and structure
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Back     alignment and structure
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Back     alignment and structure
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A Back     alignment and structure
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1 Back     alignment and structure
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A Back     alignment and structure
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Back     alignment and structure
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping, actin-binding, calcium, cytoplasm, cytoskeleton, structural protein; 2.00A {Homo sapiens} PDB: 2llf_A Back     alignment and structure
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Back     alignment and structure
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Back     alignment and structure
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding protein, protein D packing, contractIle protein; 2.50A {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A 3ffk_A* 1rgi_G* Back     alignment and structure
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A Back     alignment and structure
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A 2fh4_A 1h1v_G* 1nph_A Back     alignment and structure
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping, actin-binding, cytos phosphoprotein, actin-binding protein; 3.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 950
d2qtva1103 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Sacchar 4e-58
d2qtva1103 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Sacchar 3e-31
d1pd0a1107 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar 3e-29
d1pd0a1107 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Sacchar 3e-14
d2qtva575 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar 5e-28
d2qtva575 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar 3e-27
d2qtva575 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar 4e-07
d2qtva4142 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccha 5e-18
d2qtva4142 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccha 5e-18
d2qtva2176 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S 3e-16
d2qtva2176 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S 3e-16
d2qtva2176 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (S 6e-14
d2qtva3271 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Sacchar 4e-15
d1pd0a585 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha 5e-14
d1pd0a585 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha 2e-13
d1pd0a3252 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Sacchar 2e-09
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 Back     information, alignment and structure

class: All alpha proteins
fold: ERP29 C domain-like
superfamily: Helical domain of Sec23/24
family: Helical domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  192 bits (489), Expect = 4e-58
 Identities = 72/103 (69%), Positives = 86/103 (83%)

Query: 799 DQEAAAVIMGRMVVNRAEQDDGPDVMRWADRTLIRLCQKFGHYNKDDPHSFQLPENFQMY 858
           DQEAAAV+M R+ V++AE DDG DV+RW DRTLI+LCQK+  YNKDDP SF+L  NF +Y
Sbjct: 1   DQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLY 60

Query: 859 PQFMYHLRRSQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQ 901
           PQF Y+LRRSQFL VFNNSPDET++YRH+  RED + SLIMIQ
Sbjct: 61  PQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQ 103
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 103 Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 107 Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75 Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 142 Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 142 Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 176 Back     information, alignment and structure
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 271 Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85 Back     information, alignment and structure
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query950
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 100.0
d1pd0a3252 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.96
d2qtva1103 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.89
d2qtva1103 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.89
d1pd0a1107 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.86
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.79
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.63
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.39
d2qtva575 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.38
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.35
d2qtva2176 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 99.31
d1pd0a585 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 99.07
d2qtva4142 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 98.74
d2qtva4142 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 98.1
d1pd0a4 173 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 97.73
d2fh1a3113 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 96.96
d1svya_102 Severin, domain 2 {Dictyostelium discoideum [TaxId 96.77
d2fh1a296 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 96.23
d1j72a2116 Macrophage capping protein Cap G {Human (Homo sapi 96.03
d1pd0a2177 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 95.61
d1j72a3107 Macrophage capping protein Cap G {Human (Homo sapi 95.54
d1pd0a1107 Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T 95.14
d1kcqa_104 Gelsolin {Human (Homo sapiens) [TaxId: 9606]} 94.95
d1d0na3121 Gelsolin {Horse (Equus caballus) [TaxId: 9796]} 94.77
d2qtva3271 Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T 82.0
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: vWA-like
superfamily: vWA-like
family: Trunk domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-35  Score=318.01  Aligned_cols=148  Identities=26%  Similarity=0.412  Sum_probs=133.2

Q ss_pred             cccccccCCCCcchHHHHHHHhhCCCCCccceeeeccCCCCCccccccccchHHHHHHHHhhcc----cccc-cccCCCC
Q psy13068        552 SQFLQVFNNSPDETSYYRTLLIHLPHYSRFQFLQVFNNSPDETSYYRHVLMREDLSQSLIMIQP----VLYS-YGFNGPP  626 (950)
Q Consensus       552 s~fL~~l~e~~~~~~~i~~lL~~L~~~~~~~~lqvf~~s~~~~~~~r~~G~~~Al~~A~~ll~p----~~~~-~~f~gGp  626 (950)
                      +.|++|+++|++.   |+.+|++|++ ++|++       ++++++.||+|  +||.+|..+|+.    .+++ ++|++||
T Consensus       106 ~~~l~~~~e~~~~---i~~lL~~L~~-~~~~~-------~~~~~~~~~~G--~Al~~A~~ll~~~~~~~gGkI~~F~sg~  172 (271)
T d2qtva3         106 NRFFLPLEQVEFK---LNQLLENLSP-DQWSV-------PAGHRPLRATG--SALNIASLLLQGCYKNIPARIILFASGP  172 (271)
T ss_dssp             GGGSEEHHHHHHH---HHHHHHHCCC-CCCCC-------CTTBCCCCCHH--HHHHHHHHHHHHHCTTSCEEEEEEESSC
T ss_pred             ccccccHHHHHHH---HHHHHHHhcc-CcccC-------CCCCCcccchH--HHHHHHHHHHHhhccCCCcEEEEEeCCC
Confidence            5799999999887   9999999998 78887       78899999999  999999999983    2222 4666666


Q ss_pred             ceEeccccccCCceeecccchhhhhhccCCCccccccccccccchhhhhhHHHHHHHHHHHhhcccEEEEEeccCCCCCc
Q psy13068        627 VPVLLDTSSIKPDCILLMDTFFQLLIFHGEEPIRSHNDIHKGNNKYQKMATKHYEGLALRAAIVGHAIDIYSCALDQTGL  706 (950)
Q Consensus       627 ~~v~l~s~s~GPG~i~~~d~~~~~~~~~~~~~irs~~d~~k~~~~~~~pa~~FYk~LA~~~~~~gIsVDLF~~s~~~vdl  706 (950)
                      +       |.|||+|+.++         .++++|+|+|++|+++++++++++||++||.+|+++||+||+|+++.+|+||
T Consensus       173 p-------t~GpG~l~~r~---------~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~~isvDlF~~s~~~~dl  236 (271)
T d2qtva3         173 G-------TVAPGLIVNSE---------LKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGM  236 (271)
T ss_dssp             C-------CSSSSCSSCSB---------TTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCCSH
T ss_pred             C-------CCCCccccccc---------cccccCCccchhhhhhhhhhhHHHHHHHHHHHHHHCCeEEEEEEecCccCCh
Confidence            6       99999999555         4677999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhccCCCcEEEEcCCCCC
Q psy13068        707 LEMKLCCNATGKPSHVLIAIEFAQ  730 (950)
Q Consensus       707 atl~~L~~~TGG~~~v~~y~~F~~  730 (950)
                      +||++|++.|||  .+|+|++|+.
T Consensus       237 ~~l~~l~~~TGG--~v~~~~~F~~  258 (271)
T d2qtva3         237 SEMKQLTDSTGG--VLLLTDAFST  258 (271)
T ss_dssp             HHHTHHHHTTTC--CEEEESCTTS
T ss_pred             HHHHhHHhhCCc--eEEEeCCcCH
Confidence            999999999999  9999999985
>d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva1 a.71.2.1 (A:524-626) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pd0a4 d.109.2.1 (A:754-926) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1svya_ d.109.1.1 (A:) Severin, domain 2 {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j72a2 d.109.1.1 (A:125-240) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kcqa_ d.109.1.1 (A:) Gelsolin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus) [TaxId: 9796]} Back     information, alignment and structure
>d2qtva3 c.62.1.2 (A:120-390) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure