Psyllid ID: psy13078

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-----
MKNLNLSAVFSFNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKGRVNH
cccccccccccHHHHccccEEEEcccccccHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccEEcccccccEEEcccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHccccccccEEEEEEccccccccccccccEEccccHHHHHHHHHHHHccHHHHHHcccccccEEccccccccccccccccccccccccEEEEEcccccEEEEEcccccccccccccccHHHHHHHHHHHccHHHHHHHHHEEEcccccEEEEEEEcccccccHHHHcccccccccEEEEEcccccccccc
ccccccHHHHHHHHEccccEEEEcccccccHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHcccEEEcccccccEEEEccHHHEEEEcccEEEEcccHccccccccccccccccccccHHHHHHHHHHHccccccccEEEEEEccccccccccHHcEEEEccccEEEEEEHHHHcccHHHHHHHccccccEEEEEcccccccccccccccccccccEEEEEcccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccEEEEEEEcccccccccHHEEcccccccEEEEEEccccccccc
MKNLNLSAVFSFNQEIRKFSLKhgyvsaispkLKSFIDNCvelcqpsdvhicdgsEREYKELIDLMVkdktlrpvpkyencwlartnpadvarvesktfictqekaetvpdtkpgvkgtlgnwispqdYEEAIMQRfpgcmkgrtmyvipfsmgpvgsplskigveitdspyvvgsmrimtrigtpvlnlldadqpFVKALhsvgtpvsgkhefpewpcdpertiilhkpaaneivsygsgyggnsllgkKCFALRIGSTIAKREGWLAEHMLILGitnpegqkKYIAAafpsacgktnlamlnptlpgykvecvgvpykgrvnh
MKNLNLSAVFSFNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMvkdktlrpvpkyencwlartnpadvarVESKTfictqekaetvpdtkpgvkgTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKGRVNH
MKNLNLSAVFSFNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVsygsgyggnsllgKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKGRVNH
*****LSAVFSFNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETV****PGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYK*****
***************************AISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKA*********VKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG****
MKNLNLSAVFSFNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKGRVNH
**NLNLSAVFSFNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKGR***
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MKNLNLSAVFSFNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKGRVNH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query325 2.2.26 [Sep-21-2011]
P20007 647 Phosphoenolpyruvate carbo no N/A 0.926 0.465 0.710 1e-128
P05153 622 Phosphoenolpyruvate carbo yes N/A 0.898 0.469 0.637 1e-110
P35558 622 Phosphoenolpyruvate carbo yes N/A 0.898 0.469 0.650 1e-110
Q5R5J1 622 Phosphoenolpyruvate carbo yes N/A 0.898 0.469 0.650 1e-109
Q8BH04 640 Phosphoenolpyruvate carbo yes N/A 0.929 0.471 0.605 1e-109
Q16822 640 Phosphoenolpyruvate carbo no N/A 0.929 0.471 0.605 1e-109
P07379 622 Phosphoenolpyruvate carbo no N/A 0.910 0.475 0.637 1e-108
Q9Z2V4 622 Phosphoenolpyruvate carbo no N/A 0.910 0.475 0.631 1e-107
Q8HYZ4 622 Phosphoenolpyruvate carbo no N/A 0.898 0.469 0.637 1e-107
P21642 641 Phosphoenolpyruvate carbo no N/A 0.889 0.450 0.583 3e-97
>sp|P20007|PCKG_DROME Phosphoenolpyruvate carboxykinase [GTP] OS=Drosophila melanogaster GN=Pepck PE=2 SV=2 Back     alignment and function desciption
 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 214/301 (71%), Positives = 250/301 (83%)

Query: 16  IRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV 75
           IR   + +G V  ++  +++F++  + LCQP  VHICDGSE+E K LI  +++  T+ P+
Sbjct: 35  IRGIPISYGNVDLLTTGVRAFVEEGIALCQPDQVHICDGSEQENKVLIKSLLEAGTIVPL 94

Query: 76  PKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQ 135
           PKY+NCWLARTNPADVARVES+TFICT+ + ET+P    GVKGTLGNWISP D + A+ Q
Sbjct: 95  PKYDNCWLARTNPADVARVESRTFICTERREETIPTPVEGVKGTLGNWISPSDMDAAVQQ 154

Query: 136 RFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQ 195
           RFPGCMKGRTMYV+PFSMGPVGSPLSKIG+E+TDS YVV SMRIMTR+G  VL  L   +
Sbjct: 155 RFPGCMKGRTMYVVPFSMGPVGSPLSKIGIELTDSAYVVASMRIMTRMGAAVLRQLAKKE 214

Query: 196 PFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFAL 255
            FV+ALHSVG P +G+ E P WPCDPERTIILHKPA N IVSYGSGYGGNSLLGKKCFAL
Sbjct: 215 EFVRALHSVGAPANGQVEQPSWPCDPERTIILHKPAENLIVSYGSGYGGNSLLGKKCFAL 274

Query: 256 RIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECV 315
           RIGSTIAK+EGWLAEHMLILGIT+P+G+KKYI AAFPSACGKTNLAMLNP+L  YKVECV
Sbjct: 275 RIGSTIAKQEGWLAEHMLILGITDPKGEKKYITAAFPSACGKTNLAMLNPSLANYKVECV 334

Query: 316 G 316
           G
Sbjct: 335 G 335
Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle.
Drosophila melanogaster (taxid: 7227)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 2
>sp|P05153|PCKGC_CHICK Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Gallus gallus GN=PCK1 PE=2 SV=1 Back     alignment and function description
>sp|P35558|PCKGC_HUMAN Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Homo sapiens GN=PCK1 PE=1 SV=3 Back     alignment and function description
>sp|Q5R5J1|PCKGC_PONAB Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Pongo abelii GN=PPCK1 PE=2 SV=1 Back     alignment and function description
>sp|Q8BH04|PCKGM_MOUSE Phosphoenolpyruvate carboxykinase [GTP], mitochondrial OS=Mus musculus GN=Pck2 PE=2 SV=1 Back     alignment and function description
>sp|Q16822|PCKGM_HUMAN Phosphoenolpyruvate carboxykinase [GTP], mitochondrial OS=Homo sapiens GN=PCK2 PE=1 SV=3 Back     alignment and function description
>sp|P07379|PCKGC_RAT Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Rattus norvegicus GN=Pck1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2V4|PCKGC_MOUSE Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Mus musculus GN=Pck1 PE=2 SV=1 Back     alignment and function description
>sp|Q8HYZ4|PCKGC_BOVIN Phosphoenolpyruvate carboxykinase, cytosolic [GTP] OS=Bos taurus GN=PPCK1 PE=2 SV=1 Back     alignment and function description
>sp|P21642|PCKGM_CHICK Phosphoenolpyruvate carboxykinase [GTP], mitochondrial OS=Gallus gallus GN=PCK2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
195056400 639 GH22961 [Drosophila grimshawi] gi|193899 0.944 0.480 0.730 1e-131
289742649 645 phosphoenolpyruvate carboxykinase [Gloss 0.926 0.466 0.747 1e-131
198458179 647 GA14628 [Drosophila pseudoobscura pseudo 0.926 0.465 0.727 1e-129
332375602 644 unknown [Dendroctonus ponderosae] 0.932 0.470 0.709 1e-129
195124411 647 GI18450 [Drosophila mojavensis] gi|19391 0.926 0.465 0.737 1e-129
195056404 647 GH22963 [Drosophila grimshawi] gi|193899 0.926 0.465 0.734 1e-129
195442053 647 GK17957 [Drosophila willistoni] gi|19416 0.926 0.465 0.730 1e-128
170050102 648 phosphoenolpyruvate carboxykinase [Culex 0.926 0.464 0.707 1e-128
195381207 647 GJ21535 [Drosophila virilis] gi|19414414 0.926 0.465 0.737 1e-128
198458181 639 GA10647 [Drosophila pseudoobscura pseudo 0.944 0.480 0.724 1e-128
>gi|195056400|ref|XP_001995093.1| GH22961 [Drosophila grimshawi] gi|193899299|gb|EDV98165.1| GH22961 [Drosophila grimshawi] Back     alignment and taxonomy information
 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 225/308 (73%), Positives = 257/308 (83%), Gaps = 1/308 (0%)

Query: 10  FSFNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKD 69
           ++F    R  S+++G   A++P ++ ++D CV LCQP  VHICDG++ E K L  LM+K 
Sbjct: 20  YNFRLVCRALSVQYGDGKALTPAVRDYVDKCVNLCQPERVHICDGTQAESKLLQSLMLKQ 79

Query: 70  KTLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDY 129
            T++P+PKY+NCWLARTNPADVARVESKTFICT+ K +TVP T  G  GTLGNWIS +D 
Sbjct: 80  GTIQPLPKYDNCWLARTNPADVARVESKTFICTERKEQTVPVTAKGTPGTLGNWISEKDL 139

Query: 130 EEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLN 189
           + AI +RFPGCMKGRTMYVIPFSMGPVGSPLSKIG+EITDSPYVV SM+IMTR GTPVL 
Sbjct: 140 QAAIGERFPGCMKGRTMYVIPFSMGPVGSPLSKIGIEITDSPYVVESMKIMTRAGTPVLQ 199

Query: 190 LLD-ADQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLL 248
           +L+  D  FVK LHSVG P +G H    WPCDPERTIILHKPA NEIVSYGSGYGGNSLL
Sbjct: 200 VLEKGDGQFVKCLHSVGNPANGVHAHKSWPCDPERTIILHKPAENEIVSYGSGYGGNSLL 259

Query: 249 GKKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLP 308
           GKKCFALRIGSTIAKREGWLAEHMLILGITNP+G+K Y+AAAFPSACGKTNLAM+ PTLP
Sbjct: 260 GKKCFALRIGSTIAKREGWLAEHMLILGITNPQGKKIYVAAAFPSACGKTNLAMMTPTLP 319

Query: 309 GYKVECVG 316
           GYKVECVG
Sbjct: 320 GYKVECVG 327

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|289742649|gb|ADD20072.1| phosphoenolpyruvate carboxykinase [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|198458179|ref|XP_001360944.2| GA14628 [Drosophila pseudoobscura pseudoobscura] gi|198136249|gb|EAL25519.2| GA14628 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|332375602|gb|AEE62942.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|195124411|ref|XP_002006686.1| GI18450 [Drosophila mojavensis] gi|193911754|gb|EDW10621.1| GI18450 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|195056404|ref|XP_001995094.1| GH22963 [Drosophila grimshawi] gi|193899300|gb|EDV98166.1| GH22963 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|195442053|ref|XP_002068775.1| GK17957 [Drosophila willistoni] gi|194164860|gb|EDW79761.1| GK17957 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|170050102|ref|XP_001859363.1| phosphoenolpyruvate carboxykinase [Culex quinquefasciatus] gi|167871673|gb|EDS35056.1| phosphoenolpyruvate carboxykinase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|195381207|ref|XP_002049346.1| GJ21535 [Drosophila virilis] gi|194144143|gb|EDW60539.1| GJ21535 [Drosophila virilis] Back     alignment and taxonomy information
>gi|198458181|ref|XP_001360943.2| GA10647 [Drosophila pseudoobscura pseudoobscura] gi|198136250|gb|EAL25518.2| GA10647 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query325
FB|FBgn0034356 638 CG10924 [Drosophila melanogast 0.941 0.479 0.680 2.9e-112
FB|FBgn0003067 647 Pepck "Phosphoenolpyruvate car 0.926 0.465 0.667 2.9e-110
UNIPROTKB|F1NKP4 622 PCK1 "Phosphoenolpyruvate carb 0.895 0.467 0.605 8.4e-97
UNIPROTKB|P05153 622 PCK1 "Phosphoenolpyruvate carb 0.895 0.467 0.598 7.6e-96
UNIPROTKB|P35558 622 PCK1 "Phosphoenolpyruvate carb 0.895 0.467 0.612 1.6e-95
UNIPROTKB|Q5R5J1 622 PPCK1 "Phosphoenolpyruvate car 0.895 0.467 0.612 2.6e-95
UNIPROTKB|F1MDS3 640 PCK2 "Uncharacterized protein" 0.923 0.468 0.579 5.3e-95
RGD|3267 622 Pck1 "phosphoenolpyruvate carb 0.910 0.475 0.598 8.7e-95
RGD|1311112 666 Pck2 "phosphoenolpyruvate carb 0.926 0.451 0.577 1.1e-94
UNIPROTKB|E2QSP6 640 PCK2 "Uncharacterized protein" 0.929 0.471 0.575 1.4e-94
FB|FBgn0034356 CG10924 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 209/307 (68%), Positives = 237/307 (77%)

Query:    11 SFNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDK 70
             +F    R  S+++G    ++P +K +++ CVELCQP  VHICDG+E E K L  +M+K  
Sbjct:    21 NFRLTCRFLSIQYGDAKILTPAVKQYVEKCVELCQPERVHICDGTEVESKLLQGIMLKKG 80

Query:    71 TLRPVPKYENCWLARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYE 130
             T+ P+PKYENCWLARTNPADVARVE KTFI T  K +TVP T+    G LGNWI+ +D +
Sbjct:    81 TIIPLPKYENCWLARTNPADVARVEGKTFISTDSKEQTVPVTEKATPGMLGNWIAEKDMQ 140

Query:   131 EAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNL 190
              AI +RFPGCMKGRTMYVIPFSMGPVGSPLSKIG+EITDSPYVV SM+IMTR G PVLN 
Sbjct:   141 AAIKERFPGCMKGRTMYVIPFSMGPVGSPLSKIGIEITDSPYVVESMKIMTRAGNPVLNY 200

Query:   191 LDA-DQPFVKALHSVGTPVSGKHEFPEWPCDPERTIILHKPAANEIVXXXXXXXXXXXXX 249
             L + D  FVK LHSVGTP SG    P WPCDPERTI+LHKPA NEIV             
Sbjct:   201 LQSGDGQFVKCLHSVGTPKSGVQAMPSWPCDPERTIVLHKPAENEIVSYGSGYGGNSLLG 260

Query:   250 KKCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPG 309
             KKC ALRIGSTIAKREGWLAEHMLILGITNP+G+K YIAAAFPSACGKTNLAM+ PTLPG
Sbjct:   261 KKCLALRIGSTIAKREGWLAEHMLILGITNPQGKKIYIAAAFPSACGKTNLAMMTPTLPG 320

Query:   310 YKVECVG 316
             YKVECVG
Sbjct:   321 YKVECVG 327
GO:0004613 "phosphoenolpyruvate carboxykinase (GTP) activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISS
GO:0006094 "gluconeogenesis" evidence=ISS
GO:0005525 "GTP binding" evidence=IEA
FB|FBgn0003067 Pepck "Phosphoenolpyruvate carboxykinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKP4 PCK1 "Phosphoenolpyruvate carboxykinase, cytosolic [GTP]" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P05153 PCK1 "Phosphoenolpyruvate carboxykinase, cytosolic [GTP]" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P35558 PCK1 "Phosphoenolpyruvate carboxykinase, cytosolic [GTP]" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5R5J1 PPCK1 "Phosphoenolpyruvate carboxykinase, cytosolic [GTP]" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1MDS3 PCK2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|3267 Pck1 "phosphoenolpyruvate carboxykinase 1 (soluble)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1311112 Pck2 "phosphoenolpyruvate carboxykinase 2 (mitochondrial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QSP6 PCK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q256B8PCKG_CHLFF4, ., 1, ., 1, ., 3, 20.53490.84610.4583yesN/A
Q0RCJ7PCKG_FRAAA4, ., 1, ., 1, ., 3, 20.54160.84300.4514yesN/A
Q5R5J1PCKGC_PONAB4, ., 1, ., 1, ., 3, 20.65080.89840.4694yesN/A
Q9PLL6PCKG_CHLMU4, ., 1, ., 1, ., 3, 20.53140.84610.4590yesN/A
Q8BH04PCKGM_MOUSE4, ., 1, ., 1, ., 3, 20.60520.92920.4718yesN/A
B8ZTI5PCKG_MYCLB4, ., 1, ., 1, ., 3, 20.50340.84300.4499yesN/A
Q821M4PCKG_CHLCV4, ., 1, ., 1, ., 3, 20.53490.84610.4583yesN/A
Q7WAK8PCKG_BORPA4, ., 1, ., 1, ., 3, 20.51040.84300.4433yesN/A
Q5P2P8PCKG_AROAE4, ., 1, ., 1, ., 3, 20.51730.84610.4478yesN/A
Q5YNB0PCKG_NOCFA4, ., 1, ., 1, ., 3, 20.51380.84300.4491yesN/A
Q4JY04PCKG_CORJK4, ., 1, ., 1, ., 3, 20.50520.84610.4537yesN/A
O06084PCKG_MYCLE4, ., 1, ., 1, ., 3, 20.50340.84300.4499yesN/A
O84716PCKG_CHLTR4, ., 1, ., 1, ., 3, 20.52880.87070.4724yesN/A
B2S270PCKG_TREPS4, ., 1, ., 1, ., 3, 20.55050.84920.4466yesN/A
Q869Z4PCKGM_DICDI4, ., 1, ., 1, ., 3, 20.52490.89230.4441yesN/A
B0VDR1PCKG_ACIBY4, ., 1, ., 1, ., 3, 20.51030.84920.4524yesN/A
B2HXC1PCKG_ACIBC4, ., 1, ., 1, ., 3, 20.51030.84920.4524yesN/A
Q2L1L0PCKG_BORA14, ., 1, ., 1, ., 3, 20.50170.84610.4428yesN/A
Q9Z755PCKG_CHLPN4, ., 1, ., 1, ., 3, 20.54540.84610.4583yesN/A
A3DJE3PCKG_CLOTH4, ., 1, ., 1, ., 3, 20.56250.84920.4561yesN/A
Q5L4X1PCKG_CHLAB4, ., 1, ., 1, ., 3, 20.53220.87070.4693yesN/A
O83159PCKG_TREPA4, ., 1, ., 1, ., 3, 20.55050.84920.4466yesN/A
P05153PCKGC_CHICK4, ., 1, ., 1, ., 3, 20.63720.89840.4694yesN/A
A4X388PCKG_SALTO4, ., 1, ., 1, ., 3, 20.53470.84920.4509yesN/A
B7GY31PCKG_ACIB34, ., 1, ., 1, ., 3, 20.51030.84920.4524yesN/A
B0VSN6PCKG_ACIBS4, ., 1, ., 1, ., 3, 20.51030.84920.4524yesN/A
B2JJT8PCKG_BURP84, ., 1, ., 1, ., 3, 20.50860.84610.4449yesN/A
A8L175PCKG_FRASN4, ., 1, ., 1, ., 3, 20.53470.84300.4514yesN/A
P35558PCKGC_HUMAN4, ., 1, ., 1, ., 3, 20.65080.89840.4694yesN/A
A3M840PCKG_ACIBT4, ., 1, ., 1, ., 3, 20.51370.84920.4517yesN/A
B7I624PCKG_ACIB54, ., 1, ., 1, ., 3, 20.51030.84920.4524yesN/A
Q8KAD1PCKG_CHLTE4, ., 1, ., 1, ., 3, 20.53440.84300.4412yesN/A
A8M2V8PCKG_SALAI4, ., 1, ., 1, ., 3, 20.52770.84920.4509yesN/A
Q8FM16PCKG_COREF4, ., 1, ., 1, ., 3, 20.51210.84610.4493yesN/A
Q746Y3PCKG_GEOSL4, ., 1, ., 1, ., 3, 20.53260.84610.4449yesN/A
Q2J645PCKG_FRASC4, ., 1, ., 1, ., 3, 20.52770.84300.4499yesN/A
Q7WJQ9PCKG_BORBR4, ., 1, ., 1, ., 3, 20.51040.84300.4433yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.320.824
3rd Layer4.1.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
pfam00821 586 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinas 1e-179
cd00819 579 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykin 1e-168
PRK04210 601 PRK04210, PRK04210, phosphoenolpyruvate carboxykin 1e-157
COG1274 608 COG1274, PckA, Phosphoenolpyruvate carboxykinase ( 1e-131
cd01919 515 cd01919, PEPCK, Phosphoenolpyruvate carboxykinase 8e-70
cd00820107 cd00820, PEPCK_HprK, Phosphoenolpyruvate carboxyki 3e-11
>gnl|CDD|216136 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase Back     alignment and domain information 
 Score =  507 bits (1308), Expect = e-179
 Identities = 174/284 (61%), Positives = 210/284 (73%), Gaps = 11/284 (3%)

Query: 35  SFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPV--PKYENCWLARTNPADVA 92
            ++    ELCQP  V+ICDGSE EY  L    V+   L P+   K+ NC+LAR++P+DVA
Sbjct: 1   EWVAEVAELCQPDRVYICDGSEEEYDRLRKKAVEAGELIPLNEEKHPNCYLARSDPSDVA 60

Query: 93  RVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFS 152
           RVES+TFICT +K +  P           NW+ P++ +  + + F GCMKGRTMYVIPFS
Sbjct: 61  RVESRTFICTPDKEDAGPTN---------NWMDPEEMKAELRELFKGCMKGRTMYVIPFS 111

Query: 153 MGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKH 212
           MGPVGSP SKIGV++TDSPYVV SMRIMTR+G  VL+ L  D  FV+ LHSVG P+    
Sbjct: 112 MGPVGSPFSKIGVQLTDSPYVVHSMRIMTRMGFEVLDALGEDGEFVRCLHSVGAPLEPGQ 171

Query: 213 EFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTIAKREGWLAEHM 272
           +   WPC+P++  I+H P    I S+GSGYGGN+LLGKKCFALRI S +A+ EGWLAEHM
Sbjct: 172 KDVNWPCNPDKRYIVHFPEERTIWSFGSGYGGNALLGKKCFALRIASYMARDEGWLAEHM 231

Query: 273 LILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
           LILGITNPEG+KKYIAAAFPSACGKTNLAML PTLPG+KVECVG
Sbjct: 232 LILGITNPEGRKKYIAAAFPSACGKTNLAMLTPTLPGWKVECVG 275

catalyzes the formation of phosphoenolpyruvate by decarboxylation of oxaloacetate. Length = 586
>gnl|CDD|238417 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>gnl|CDD|235256 PRK04210, PRK04210, phosphoenolpyruvate carboxykinase; Provisional Back     alignment and domain information
>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|238900 cd01919, PEPCK, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>gnl|CDD|238418 cd00820, PEPCK_HprK, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 325
KOG3749|consensus 640 100.0
cd00819 579 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK 100.0
PF00821 586 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro 100.0
PRK04210 601 phosphoenolpyruvate carboxykinase; Provisional 100.0
COG1274 608 PckA Phosphoenolpyruvate carboxykinase (GTP) [Ener 100.0
cd01919 515 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a 100.0
PRK09344 526 phosphoenolpyruvate carboxykinase; Provisional 98.02
PF01293 466 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The P 98.01
PTZ00311 561 phosphoenolpyruvate carboxykinase; Provisional 97.97
PLN02597 555 phosphoenolpyruvate carboxykinase [ATP] 97.72
cd00820107 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC 97.68
cd00484 508 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK 97.45
TIGR00224 532 pckA phosphoenolpyruvate carboxykinase (ATP). Invo 96.48
COG3842 352 PotA ABC-type spermidine/putrescine transport syst 89.27
COG1167459 ARO8 Transcriptional regulators containing a DNA-b 83.63
cd01394 218 radB RadB. The archaeal protein radB shares simila 83.51
PRK06696 223 uridine kinase; Validated 83.5
PRK09270 229 nucleoside triphosphate hydrolase domain-containin 83.17
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 83.02
COG1117 253 PstB ABC-type phosphate transport system, ATPase c 82.39
cd01393 226 recA_like RecA is a bacterial enzyme which has rol 81.5
TIGR00554 290 panK_bact pantothenate kinase, bacterial type. Sho 81.4
COG4525 259 TauB ABC-type taurine transport system, ATPase com 80.1
>KOG3749|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.3e-144  Score=1067.19  Aligned_cols=309  Identities=65%  Similarity=1.162  Sum_probs=305.1

Q ss_pred             hhhccccceeeeccccccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcc
Q psy13078         12 FNQEIRKFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADV   91 (325)
Q Consensus        12 ~~~~~~~~~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~Dv   91 (325)
                      ++++++++||++|||.+|+++|++||+|+|+||||+.|||||||++|++.|++.|+++|.+.+|.+|+||||+|+||+||
T Consensus        23 ~~~~~~~vpv~kGd~~~L~~~V~~Fv~~~~eL~qP~~i~ICdGSe~E~~~l~~~l~e~g~~~~l~~ydn~~L~rtdp~DV  102 (640)
T KOG3749|consen   23 IVPNIGQVPVLKGDLDSLPPAVRTFVEECAELCQPDGIHICDGSEFENQELLDALEEEGGLRPLPKYDNCWLARTDPRDV  102 (640)
T ss_pred             eecccCcceeeecccccCCHHHHHHHHHHHHhcCcceeEecCCcHHHHHHHHHHHHHhcCcccchhhhcceeecCChhhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccceEEEcCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCch
Q psy13078         92 ARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSP  171 (325)
Q Consensus        92 ARve~rTfI~t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~  171 (325)
                      ||||++|||+|++++|+.|++.+|++++|+|||++++|..++++||||||+|||||||||||||+|||+||+||||||||
T Consensus       103 arVeskT~i~t~~~~dtv~~~~eGv~~~lg~wms~~df~~~~~~rFpgcM~GRtMYVvPFSMGpvGsplskiGiqlTDsp  182 (640)
T KOG3749|consen  103 ARVESKTVIVTSSKRDTVPGPPEGVEGQLGHWMSEEDFDFAVDERFPGCMKGRTMYVVPFSMGPVGSPLSKIGIQLTDSP  182 (640)
T ss_pred             heeccceEEeccccccccCCCcccccccccccCCHHHHHHHHhhcCCccccCceEEEEeeccCCCCCcchhceeEecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhccccCHHHHHhcCCCCCceeeeeccCCCCCCCCC-CCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhh
Q psy13078        172 YVVGSMRIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHE-FPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGK  250 (325)
Q Consensus       172 YVv~sm~imtR~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~-~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgK  250 (325)
                      |||+|||||||||.+|||+|+++ +|||||||||.|++..++ +++|||||++++|+|.|++|||||||||||||+||||
T Consensus       183 yvV~smRimtR~g~~Vl~~l~~~-dFvrClHSVG~Prp~~~~~v~~wpcnPe~t~i~hkp~e~EI~s~GsgyGgnsllGk  261 (640)
T KOG3749|consen  183 YVVLSMRIMTRMGTPVLDALGDG-DFVRCLHSVGMPRPGQQKIVNPWPCNPERTLIAHKPDEREIWSFGSGYGGNSLLGK  261 (640)
T ss_pred             eeeeehhHHHHhccHHHHHhccc-chhhhhhhcCCCCCcccCCCCCCCCCcceeEEeecCccceeeeeccCCCCCccccc
Confidence            99999999999999999999998 699999999999999998 6779999999999999999999999999999999999


Q ss_pred             hhhHHHHHhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078        251 KCFALRIGSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG  321 (325)
Q Consensus       251 KcfALRiaS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~  321 (325)
                      |||||||||++|++||||||||||||||||+|+|+||+|||||||||||||||.|++|||||||||||||=
T Consensus       262 KcFalriaS~iak~eGWLAEhmlIlgITnP~g~k~~iaaafpSacgktnLam~~p~lPGwKV~cVgddiaW  332 (640)
T KOG3749|consen  262 KCFALRIASRLAKDEGWLAEHMLILGITNPKGEKKYIAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAW  332 (640)
T ss_pred             hhhhhhhhhhhhhhhhhHHHhHHHhcccCCCCCceEEEEecccccccchHhhcCCCCCCceEEEeccceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999983

>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>PF00821 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro: IPR008209 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate Back     alignment and domain information
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional Back     alignment and domain information
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion] Back     alignment and domain information
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional Back     alignment and domain information
>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate Back     alignment and domain information
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional Back     alignment and domain information
>PLN02597 phosphoenolpyruvate carboxykinase [ATP] Back     alignment and domain information
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis Back     alignment and domain information
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP) Back     alignment and domain information
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] Back     alignment and domain information
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] Back     alignment and domain information
>cd01394 radB RadB Back     alignment and domain information
>PRK06696 uridine kinase; Validated Back     alignment and domain information
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response Back     alignment and domain information
>TIGR00554 panK_bact pantothenate kinase, bacterial type Back     alignment and domain information
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
1khb_A 625 Pepck Complex With Nonhydrolyzable Gtp Analog, Nati 1e-102
2qf2_A 624 Rat Cytosolic Pepck In Complex With Oxaloacetic Aci 1e-100
3moe_A 624 The Structure Of Rat Cytosolic Pepck Mutant A467g I 1e-100
1khe_A 625 Pepck Complex With Nonhydrolyzable Gtp Analog, Mad 1e-94
2faf_A 608 The Structure Of Chicken Mitochondrial Pepck. Lengt 4e-91
2zci_A 610 Structure Of A Gtp-Dependent Bacterial Pep-Carboxyk 9e-70
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data Length = 625 Back     alignment and structure 
Iteration: 1

 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/295 (61%), Positives = 218/295 (73%), Gaps = 3/295 (1%)
Query: 23  HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
            G + ++   ++ F++N  ELCQP  +HICDGSE E   L+  M ++  LR + KY+NCW
Sbjct: 20  QGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCW 79
Query: 83  LARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMK 142
           LA T+P DVAR+ESKT I TQE+ +TVP  K G+   LG W+S +D+E+A   RFPGCMK
Sbjct: 80  LALTDPRDVARIESKTVIVTQEQRDTVPIPKTGLS-QLGRWMSEEDFEKAFNARFPGCMK 138
Query: 143 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALH 202
           GRTMYVIPFSMGP+GSPLSKIG+E+TDSPYVV SMRIMTR+GTPVL  L  D  FVK LH
Sbjct: 139 GRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEAL-GDGEFVKCLH 197
Query: 203 SVGTPVS-GKHEFPEWPCDPERTIILHKPAANEIVXXXXXXXXXXXXXKKCFALRIGSTI 261
           SVG P+   K     WPC+PE T+I H P   EI+             KKCFALR+ S +
Sbjct: 198 SVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRL 257
Query: 262 AKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
           AK EGWLAEHML+LGITNPEG+KKY+AAAFPSACGKTNLAM+NP+LPG+KVECVG
Sbjct: 258 AKEEGWLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVG 312
>pdb|2QF2|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And Gdp. Length = 624 Back     alignment and structure
>pdb|3MOE|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In Complex With Beta-Sulfopyruvate And Gtp Length = 624 Back     alignment and structure
>pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Mad Data Length = 625 Back     alignment and structure
>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck. Length = 608 Back     alignment and structure
>pdb|2ZCI|A Chain A, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase From Corynebacterium Glutamicum Length = 610 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query325
2faf_A 608 Phosphoenolpyruvate carboxykinase; pepck, phosphor 1e-129
2zci_A 610 Phosphoenolpyruvate carboxykinase [GTP], phosphoen 1e-126
3moe_A 624 Phosphoenolpyruvate carboxykinase, cytosolic [GTP; 1e-125
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A* Length = 608 Back     alignment and structure
 Score =  379 bits (974), Expect = e-129
 Identities = 174/296 (58%), Positives = 223/296 (75%), Gaps = 4/296 (1%)

Query: 23  HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
              +SA+    + F++  V LC+P +V +CDGSE E KEL+  +  D  L P+PKY+NCW
Sbjct: 2   STSLSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCW 61

Query: 83  LARTNPADVARVESKTFICTQEKAETVPDTKP-GVKGTLGNWISPQDYEEAIMQRFPGCM 141
           LART+P DVARVESKT + T E+++ VP   P G    LGNW+SP  ++ A+ +RFPGCM
Sbjct: 62  LARTDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGCM 121

Query: 142 KGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKAL 201
            GR +YVIPFSMGP  SPL+K+GV++TDSPYVV SMRIMTR+G  VL  LD D  FV+ L
Sbjct: 122 AGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMTRVGPAVLQRLDDD--FVRCL 179

Query: 202 HSVGTPVS-GKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGST 260
           HSVG P+   +     WPCDP R ++ H P+   IVS+GSGYGGNSLLGKKCFALRI S 
Sbjct: 180 HSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASR 239

Query: 261 IAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVG 316
           +A+++GWLAEHMLILG+T+P G+K+Y+AAAFPSACGKTNLAM+ P+LPG+++ CVG
Sbjct: 240 MAQQQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVG 295
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum} Length = 610 Back     alignment and structure
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ... Length = 624 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
3moe_A 624 Phosphoenolpyruvate carboxykinase, cytosolic [GTP; 100.0
2faf_A 608 Phosphoenolpyruvate carboxykinase; pepck, phosphor 100.0
2zci_A 610 Phosphoenolpyruvate carboxykinase [GTP], phosphoen 100.0
1j3b_A 529 ATP-dependent phosphoenolpyruvate carboxykinase; a 100.0
2olr_A 540 Phosphoenolpyruvate carboxykinase; carbon dioxide, 99.95
1ytm_A 532 Phosphoenolpyruvate carboxykinase [ATP], phosphoen 99.95
1ii2_A 524 Phosphoenolpyruvate carboxykinase; phosphate bindi 99.94
3uie_A 200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 89.15
1in4_A 334 RUVB, holliday junction DNA helicase RUVB; AAA+-cl 88.23
4eun_A 200 Thermoresistant glucokinase; putative sugar kinase 87.42
1rz3_A 201 Hypothetical protein rbstp0775; MCSG, structural g 86.52
3vaa_A 199 Shikimate kinase, SK; structural genomics, center 84.18
3c8u_A 208 Fructokinase; YP_612366.1, putative fructose trans 84.06
1znw_A 207 Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans 83.35
3ec2_A 180 DNA replication protein DNAC; helicase loader, rep 83.33
1z6g_A 218 Guanylate kinase; structural genomics, SGC, struct 82.72
3tqc_A 321 Pantothenate kinase; biosynthesis of cofactors, pr 82.44
3lnc_A 231 Guanylate kinase, GMP kinase; ALS collaborative cr 81.79
4a74_A 231 DNA repair and recombination protein RADA; hydrola 80.95
1odf_A 290 YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser 80.67
2cvh_A 220 DNA repair and recombination protein RADB; filamen 80.4
2ehv_A 251 Hypothetical protein PH0186; KAIC, RECA ATPase, un 80.15
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ... Back     alignment and structure
Probab=100.00  E-value=3e-149  Score=1128.52  Aligned_cols=301  Identities=62%  Similarity=1.109  Sum_probs=296.9

Q ss_pred             ceeeeccccccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccce
Q psy13078         19 FSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESKT   98 (325)
Q Consensus        19 ~~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~rT   98 (325)
                      +||++|||++||++|++||+|+|+|||||+|||||||+||+++|+++|+++|+++||+||||||||||||+||||||+||
T Consensus        15 ~~v~~g~~~~l~~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~ve~G~~~~L~k~pn~~l~~sdP~DvARve~rT   94 (624)
T 3moe_A           15 AKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKT   94 (624)
T ss_dssp             GGEEESCTTTSCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEEECCCTTCCSCCGGGE
T ss_pred             ceeecCChHhcCHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCcccccCCCCCEEEeCChhhccccccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhhh
Q psy13078         99 FICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMR  178 (325)
Q Consensus        99 fI~t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm~  178 (325)
                      ||||++++||+|++++| +++++|||+|+||+++|+++|+|||+|||||||||||||+|||+|++|||||||+|||+|||
T Consensus        95 fI~t~~~~da~p~~~~g-~~~~nnwm~p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~GSp~s~~GVeiTDS~YVv~smr  173 (624)
T 3moe_A           95 VIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMR  173 (624)
T ss_dssp             EEECSSHHHHSCCCSSS-CCSSCCEECHHHHHHHHHTTSTTTTTTSEEEEEEEEESCSSCTTCEEEEEEESCHHHHHHHH
T ss_pred             EEecCchhhcCCcccCC-cCcccccCCHHHHHHHHHhhCcccccCCeEEEEeeecCCCCCCccceeEEccCcHHHHHhHH
Confidence            99999999999999999 99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccCHHHHHhcCCCCCceeeeeccCCCCCCCCCC-CCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHHH
Q psy13078        179 IMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHEF-PEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRI  257 (325)
Q Consensus       179 imtR~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~~-~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALRi  257 (325)
                      ||||||++|||.|+++ +|||||||||+||++++++ ++|||||+++||+|||++|+|||||||||||||||||||||||
T Consensus       174 IMtR~g~~vld~lg~~-~Fv~clHSvG~pl~~~~~~v~~Wpcnp~k~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRi  252 (624)
T 3moe_A          174 IMTRMGTSVLEALGDG-EFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRI  252 (624)
T ss_dssp             HHSEESHHHHHHHTTC-CCEEEEEECSCCSSCSSCCBTTBCCCGGGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHH
T ss_pred             HHhhCCHHHHHhhcCC-CeeeeecccCCCCCCCCccCCCCCCCCCceEEEEecccCeEEEecCCcCcchhhhHHHHHHHH
Confidence            9999999999999974 9999999999999999985 5899999999999999999999999999999999999999999


Q ss_pred             HhhhhhhcchhHHhhhhhceeCCCCceEEEEeecCCccChhhhcccCCCCCCceEEEecccccc
Q psy13078        258 GSTIAKREGWLAEHMLILGITNPEGQKKYIAAAFPSACGKTNLAMLNPTLPGYKVECVGVPYKG  321 (325)
Q Consensus       258 aS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkv~~VGDDIA~  321 (325)
                      ||+|||+||||||||||||||||+||++||||||||||||||||||.||+|||||+|||||||-
T Consensus       253 AS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~~Gwkve~vGDDIAw  316 (624)
T 3moe_A          253 ASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAW  316 (624)
T ss_dssp             HHHHHHHHTCEEESCEEEEEECTTSCEEEEEEECCTTSSHHHHHTCCCSSTTCEEEEEESSCEE
T ss_pred             HHHHhhhcccHHHhHHHheecCCCCcEEEEEEEcccccccccHhhcCCCCCCceeEEecccEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999983
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A* Back     alignment and structure
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A* Back     alignment and structure
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A* Back     alignment and structure
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A Back     alignment and structure
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1 Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Back     alignment and structure
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Back     alignment and structure
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Back     alignment and structure
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Back     alignment and structure
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* Back     alignment and structure
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Back     alignment and structure
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 325
d1khba2250 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate 1e-126
d1khba1 363 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate 5e-30
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]} Length = 250 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase N-terminal domain
superfamily: PEP carboxykinase N-terminal domain
family: PEP carboxykinase N-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  360 bits (925), Expect = e-126
 Identities = 147/245 (60%), Positives = 181/245 (73%), Gaps = 3/245 (1%)

Query: 23  HGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCW 82
            G + ++   ++ F++N  ELCQP  +HICDGSE E   L+  M ++  LR + KY+NCW
Sbjct: 8   QGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCW 67

Query: 83  LARTNPADVARVESKTFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMK 142
           LA T+P DVAR+ESKT I TQE+ +TVP  K G+   LG W+S +D+E+A   RFPGCMK
Sbjct: 68  LALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMK 126

Query: 143 GRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSMRIMTRIGTPVLNLLDADQPFVKALH 202
           GRTMYVIPFSMGP+GSPLSKIG+E+TDSPYVV SMRIMTR+GTPVL  L   + FVK LH
Sbjct: 127 GRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEALGDGE-FVKCLH 185

Query: 203 SVGTPVS-GKHEFPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALRIGSTI 261
           SVG P+   K     WPC+PE T+I H P   EI+S+GSGYGGNSLLGKKCFALR+ S +
Sbjct: 186 SVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRMASRL 245

Query: 262 AKREG 266
           AK EG
Sbjct: 246 AKEEG 250
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]} Length = 363 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query325
d1khba2250 Cytosolic phosphoenolpyruvate carboxykinase (GTP-h 100.0
d1ii2a2199 Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo 93.97
d1j3ba2210 Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo 93.86
d2olra2222 Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo 91.46
d1rz3a_ 198 Hypothetical protein rbstp0775 {Bacillus stearothe 90.18
d1x6va3 195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 88.37
d1gvnb_ 273 Plasmid maintenance system epsilon/zeta, toxin zet 86.76
d1n0wa_ 242 DNA repair protein Rad51, catalytic domain {Human 84.35
d1v5wa_ 258 Meiotic recombination protein DMC1/LIM15 homolog { 83.21
d1l2ta_ 230 MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 82.67
d1in4a2 238 Holliday junction helicase RuvB {Thermotoga mariti 82.6
d1szpa2 251 DNA repair protein Rad51, catalytic domain {Baker' 81.8
d1pzna2 254 DNA repair protein Rad51, catalytic domain {Archae 80.75
d1sxja2 253 Replication factor C1 {Baker's yeast (Saccharomyce 80.34
d3b60a1 253 Multidrug resistance ABC transporter MsbA, C-termi 80.25
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase N-terminal domain
superfamily: PEP carboxykinase N-terminal domain
family: PEP carboxykinase N-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-120  Score=839.69  Aligned_cols=247  Identities=59%  Similarity=1.061  Sum_probs=241.9

Q ss_pred             cceeeeccccccCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccCCCCCcEEeccCCCcccccccc
Q psy13078         18 KFSLKHGYVSAISPKLKSFIDNCVELCQPSDVHICDGSEREYKELIDLMVKDKTLRPVPKYENCWLARTNPADVARVESK   97 (325)
Q Consensus        18 ~~~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~l~~~G~~~~L~~~~n~~l~rsdp~DvARve~r   97 (325)
                      +++|++|+|++||++|++||+|+|+||+||+|||||||+||+++|+++|+++|++++|++|||||||||||.||||||+|
T Consensus         3 ~~~~~~g~~~~l~~~v~~~v~e~~~L~~Pd~V~~cdGS~eE~~~l~~~~v~~G~~~~L~k~pn~~l~rsdP~DvARve~r   82 (250)
T d1khba2           3 SAKVVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNCWLALTDPRDVARIESK   82 (250)
T ss_dssp             GGGEEESCGGGSCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHHTSCEECTTSBSCEEECCCTTSSSCCGGG
T ss_pred             cceeecCChhhcCHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCcccccCCCCcEEEecCcccceeeccc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEcCCCCCcCCCCCCCccCCCccccCHHHHHHHHHhcCccccCCCeEEEEecccCCCCCCCCcceeeccCchhHHhhh
Q psy13078         98 TFICTQEKAETVPDTKPGVKGTLGNWISPQDYEEAIMQRFPGCMKGRTMYVIPFSMGPVGSPLSKIGVEITDSPYVVGSM  177 (325)
Q Consensus        98 TfI~t~~~~da~p~~~~Gv~~~l~nwm~~~~~~~~l~~~f~G~M~GRtMyViPfsmGPigsp~s~~GVqlTDS~YVv~sm  177 (325)
                      |||||++++||||+.++|+ ++|||||+|++|+++++++|+|||+|||||||||||||+|||+|++||||||||||||||
T Consensus        83 TfI~t~~~~dagP~~~~g~-~~lnnw~~p~e~~~~l~~lf~G~M~GRtMYVipfsMGP~gSp~s~~GVqiTDS~YVv~sm  161 (250)
T d1khba2          83 TVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASM  161 (250)
T ss_dssp             EEEECSSHHHHSCCCSSSC-CSSCCEECHHHHHHHHHHHSTTTTTTSEEEEEEEEESSSSCTTCEEEEEEESCHHHHHHH
T ss_pred             ceeecCchhccCCccccCc-ccccccCCHHHHHHHHHHHhhhhhcCCEEEEEeeeecCCCCCCCcceEEeeCCHHHHHhH
Confidence            9999999999999999999 689999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCHHHHHhcCCCCCceeeeeccCCCCCCCCC-CCCCCCCCCceEEEEcCCCCeEEEeCCCcchhhhhhhhhhHHH
Q psy13078        178 RIMTRIGTPVLNLLDADQPFVKALHSVGTPVSGKHE-FPEWPCDPERTIILHKPAANEIVSYGSGYGGNSLLGKKCFALR  256 (325)
Q Consensus       178 ~imtR~g~~v~d~l~~~~~Fvr~vHSvG~pl~~~~~-~~~Wpcn~~~~~I~h~p~~r~I~S~gSgYGGNaLLgKKcfALR  256 (325)
                      +||||||++||+.|+++ +|||||||+|+||+.+++ +++|||||+++||+|||++|+||||||||||||||||||||||
T Consensus       162 ~imtR~g~~vl~~lg~~-~Fv~~vHSvG~pl~~~~~~~~~wpcnp~~~~I~h~p~~~~I~S~gSgYGGNaLlGKKc~ALR  240 (250)
T d1khba2         162 RIMTRMGTPVLEALGDG-EFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALR  240 (250)
T ss_dssp             HHHSEESHHHHHHHTTC-CCEEEEEECSCCSSCSSCCSTTCCCCGGGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCCCH
T ss_pred             HHHHhccHHHHHhcCCC-CeeeeeeccCCCCccCCCcCCCCCCCCCceEEEEcCCcceEEEECCCccchHHHHHHHHHHH
Confidence            99999999999999865 999999999999999988 4689999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhcc
Q psy13078        257 IGSTIAKREG  266 (325)
Q Consensus       257 iaS~~Ar~EG  266 (325)
                      |||++||+||
T Consensus       241 ias~~a~~EG  250 (250)
T d1khba2         241 MASRLAKEEG  250 (250)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhcc
Confidence            9999999998
>d1ii2a2 c.109.1.1 (A:2-200) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1j3ba2 c.109.1.1 (A:2-211) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure