Psyllid ID: psy130

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSLG
ccEEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccEEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
ccEEEEEEEEcccccccEEEccHHcHHHccHEEccHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEEEEcccEEEEEEEccccccHHHHHHHHHHHHHHHHHccHHHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEc
MVKLFALNIlykaptsavmlkssydlqsfsffqrgsvQEFMTFVSKTMVERSQTAsrqsikegeYMCHVFVRGdnlagilvsdqeyphrVAHTLITNVLNefskavppsswptgteasisfpqlpqylaryqnpreaDAMTKIQEELDETKIILHNTIEAVLQRGEKLDDlvskseglsmQSKAFYKTArktnsccslg
MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTasrqsikegEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKseglsmqskafyktarktnsccslg
MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSLG
**KLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTM************KEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAV************ISFPQLPQYLARY***************LDETKIILHNTIEAVLQR***********************************
MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVE*SQ*ASRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDL*****************ARKTNSCCSL*
MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKT***********SIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSK**********TEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYK************
MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSLG
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query199 2.2.26 [Sep-21-2011]
O15498198 Synaptobrevin homolog YKT yes N/A 0.989 0.994 0.634 3e-68
Q3T000198 Synaptobrevin homolog YKT yes N/A 0.989 0.994 0.639 6e-68
Q7ZUN8198 Synaptobrevin homolog YKT yes N/A 0.989 0.994 0.639 8e-68
Q9CQW1198 Synaptobrevin homolog YKT yes N/A 0.989 0.994 0.634 2e-67
Q5EGY4198 Synaptobrevin homolog YKT yes N/A 0.989 0.994 0.634 4e-67
Q32N70198 Synaptobrevin homolog YKT N/A N/A 0.989 0.994 0.619 2e-65
Q6P816198 Synaptobrevin homolog YKT yes N/A 0.989 0.994 0.614 4e-65
Q6DDU7198 Synaptobrevin homolog YKT N/A N/A 0.989 0.994 0.614 7e-65
Q6C537200 Synaptobrevin homolog YKT yes N/A 0.989 0.985 0.482 5e-54
Q757A4200 Synaptobrevin homolog YKT yes N/A 0.979 0.975 0.492 1e-53
>sp|O15498|YKT6_HUMAN Synaptobrevin homolog YKT6 OS=Homo sapiens GN=YKT6 PE=1 SV=1 Back     alignment and function desciption
 Score =  257 bits (657), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 125/197 (63%), Positives = 160/197 (81%)

Query: 2   VKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIK 61
           +KL++L++LYK     V+LK++YD+ SFSFFQR SVQEFMTF S+ +VERS   +R S+K
Sbjct: 1   MKLYSLSVLYKGEAKVVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSSKGTRASVK 60

Query: 62  EGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISF 121
           E +Y+CHV+VR D+LAG++++D EYP RVA TL+  VL+EFSK V    WP G+ A+I +
Sbjct: 61  EQDYLCHVYVRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHY 120

Query: 122 PQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQ 181
           P L  +L+RYQNPREAD MTK+Q ELDETKIILHNT+E++L+RGEKLDDLVSKSE L  Q
Sbjct: 121 PALDGHLSRYQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQ 180

Query: 182 SKAFYKTARKTNSCCSL 198
           SKAFYKTARK NSCC++
Sbjct: 181 SKAFYKTARKQNSCCAI 197
Vesicular soluble NSF attachment protein receptor (v-SNARE) mediating vesicle docking and fusion to a specific acceptor cellular compartment. Functions in endoplasmic reticulum to Golgi transport; as part of a SNARE complex composed of GOSR1, GOSR2 and STX5. Functions in early/recycling endosome to TGN transport; as part of a SNARE complex composed of BET1L, GOSR1 and STX5. Has a S-palmitoyl transferase activity.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -
>sp|Q3T000|YKT6_BOVIN Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZUN8|YKT6_DANRE Synaptobrevin homolog YKT6 OS=Danio rerio GN=ykt6 PE=2 SV=1 Back     alignment and function description
>sp|Q9CQW1|YKT6_MOUSE Synaptobrevin homolog YKT6 OS=Mus musculus GN=Ykt6 PE=2 SV=1 Back     alignment and function description
>sp|Q5EGY4|YKT6_RAT Synaptobrevin homolog YKT6 OS=Rattus norvegicus GN=Ykt6 PE=1 SV=1 Back     alignment and function description
>sp|Q32N70|YKT6B_XENLA Synaptobrevin homolog YKT6-B OS=Xenopus laevis GN=ykt6-b PE=2 SV=1 Back     alignment and function description
>sp|Q6P816|YKT6_XENTR Synaptobrevin homolog YKT6 OS=Xenopus tropicalis GN=ykt6 PE=2 SV=1 Back     alignment and function description
>sp|Q6DDU7|YKT6A_XENLA Synaptobrevin homolog YKT6-A OS=Xenopus laevis GN=ykt6-a PE=2 SV=1 Back     alignment and function description
>sp|Q6C537|YKT6_YARLI Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YKT6 PE=3 SV=1 Back     alignment and function description
>sp|Q757A4|YKT6_ASHGO Synaptobrevin homolog YKT6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=YKT6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
91083639199 PREDICTED: similar to lethal (1) G0155 C 1.0 1.0 0.743 1e-87
156541401200 PREDICTED: synaptobrevin homolog YKT6-li 0.994 0.99 0.747 2e-87
383851205200 PREDICTED: synaptobrevin homolog YKT6-li 1.0 0.995 0.753 4e-87
307171078200 Synaptobrevin-like protein YKT6 [Campono 1.0 0.995 0.723 2e-85
357624161198 hypothetical protein KGM_19167 [Danaus p 0.994 1.0 0.732 1e-84
350411367200 PREDICTED: synaptobrevin homolog YKT6-li 1.0 0.995 0.718 2e-84
66558726200 PREDICTED: synaptobrevin homolog YKT6 is 1.0 0.995 0.718 5e-84
380017372200 PREDICTED: synaptobrevin homolog YKT6-li 1.0 0.995 0.713 7e-84
340729691200 PREDICTED: synaptobrevin homolog YKT6-li 0.994 0.99 0.717 8e-84
170053129199 conserved hypothetical protein [Culex qu 1.0 1.0 0.683 7e-83
>gi|91083639|ref|XP_970664.1| PREDICTED: similar to lethal (1) G0155 CG1515-PA [Tribolium castaneum] gi|270006829|gb|EFA03277.1| hypothetical protein TcasGA2_TC013212 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 148/199 (74%), Positives = 176/199 (88%)

Query: 1   MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSI 60
           MVKL+ +++LYK PTSA  LKS++DLQSFSFFQRGSV+EFMTF  KT+VER+  ASRQS+
Sbjct: 1   MVKLYCISVLYKGPTSATWLKSAFDLQSFSFFQRGSVEEFMTFFCKTIVERTIPASRQSV 60

Query: 61  KEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASIS 120
           KEGEYMCHV+VR DNLAG+++SD EYP RV+HTLIT +L+EFS+ +P SSWP  TE  ++
Sbjct: 61  KEGEYMCHVYVRSDNLAGVVISDHEYPTRVSHTLITKILDEFSQKIPASSWPNLTEREVA 120

Query: 121 FPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSM 180
           FPQL  YL++YQNPREADAMTKIQE+LDETKIILH+ IE+VLQRGEKLDDLVSKSEGLS+
Sbjct: 121 FPQLNTYLSKYQNPREADAMTKIQEDLDETKIILHHAIESVLQRGEKLDDLVSKSEGLSI 180

Query: 181 QSKAFYKTARKTNSCCSLG 199
           QSKAFYKTARKTNSCC+  
Sbjct: 181 QSKAFYKTARKTNSCCTFS 199

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156541401|ref|XP_001600708.1| PREDICTED: synaptobrevin homolog YKT6-like isoform 1 [Nasonia vitripennis] gi|345485320|ref|XP_003425242.1| PREDICTED: synaptobrevin homolog YKT6-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383851205|ref|XP_003701129.1| PREDICTED: synaptobrevin homolog YKT6-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307171078|gb|EFN63121.1| Synaptobrevin-like protein YKT6 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|357624161|gb|EHJ75040.1| hypothetical protein KGM_19167 [Danaus plexippus] Back     alignment and taxonomy information
>gi|350411367|ref|XP_003489323.1| PREDICTED: synaptobrevin homolog YKT6-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|66558726|ref|XP_624934.1| PREDICTED: synaptobrevin homolog YKT6 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|380017372|ref|XP_003692631.1| PREDICTED: synaptobrevin homolog YKT6-like [Apis florea] Back     alignment and taxonomy information
>gi|340729691|ref|XP_003403130.1| PREDICTED: synaptobrevin homolog YKT6-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|170053129|ref|XP_001862533.1| conserved hypothetical protein [Culex quinquefasciatus] gi|170056559|ref|XP_001864084.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873788|gb|EDS37171.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876181|gb|EDS39564.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
FB|FBgn0260858199 Ykt6 [Drosophila melanogaster 0.989 0.989 0.705 1.2e-72
UNIPROTKB|O15498198 YKT6 "Synaptobrevin homolog YK 0.989 0.994 0.634 2.2e-66
UNIPROTKB|Q3T000198 YKT6 "Synaptobrevin homolog YK 0.989 0.994 0.639 4.5e-66
MGI|MGI:1927550198 Ykt6 "YKT6 homolog (S. Cerevis 0.989 0.994 0.634 9.4e-66
UNIPROTKB|F1SSG1198 YKT6 "Uncharacterized protein" 0.989 0.994 0.634 1.5e-65
RGD|70897198 Ykt6 "YKT6 v-SNARE homolog (S. 0.989 0.994 0.634 1.5e-65
ZFIN|ZDB-GENE-040426-733199 ykt6 "YKT6 v-SNARE homolog (S. 0.989 0.989 0.636 5.2e-65
UNIPROTKB|Q32N70198 ykt6-b "Synaptobrevin homolog 0.989 0.994 0.619 1.8e-64
UNIPROTKB|E1BSV7198 YKT6 "Uncharacterized protein" 0.989 0.994 0.598 1.2e-63
UNIPROTKB|H9GW57198 YKT6 "Uncharacterized protein" 0.989 0.994 0.604 8.1e-60
FB|FBgn0260858 Ykt6 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 139/197 (70%), Positives = 167/197 (84%)

Query:     1 MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSI 60
             MVKLFAL+I +K  + A +LK++ DLQSFSFFQRG+V EFMTF SKT+VER+Q A RQS+
Sbjct:     1 MVKLFALSIFHKGASEARLLKTASDLQSFSFFQRGTVNEFMTFASKTIVERTQPALRQSV 60

Query:    61 KEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASIS 120
             K+  YMCHV+VR DNLAG+L++D EYPHRVAHTLIT +L++F+  V    WP GTEA+IS
Sbjct:    61 KQDAYMCHVYVRADNLAGVLIADHEYPHRVAHTLITKILDDFTAKVSADQWPNGTEATIS 120

Query:   121 FPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSM 180
             F  LP +LARYQNP EAD +TK+Q +LDETKIIL NTIEAVL+RGEKLDD+VSKSE LS+
Sbjct:   121 FDLLPAFLARYQNPVEADPLTKMQNDLDETKIILKNTIEAVLERGEKLDDMVSKSEKLSL 180

Query:   181 QSKAFYKTARKTNSCCS 197
             QSKAFYKTA+KTNSCCS
Sbjct:   181 QSKAFYKTAKKTNSCCS 197
GO:0005484 "SNAP receptor activity" evidence=ISS
GO:0030133 "transport vesicle" evidence=ISS
GO:0016192 "vesicle-mediated transport" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
UNIPROTKB|O15498 YKT6 "Synaptobrevin homolog YKT6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T000 YKT6 "Synaptobrevin homolog YKT6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1927550 Ykt6 "YKT6 homolog (S. Cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SSG1 YKT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|70897 Ykt6 "YKT6 v-SNARE homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-733 ykt6 "YKT6 v-SNARE homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q32N70 ykt6-b "Synaptobrevin homolog YKT6-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E1BSV7 YKT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H9GW57 YKT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q757A4YKT6_ASHGO2, ., 3, ., 1, ., -0.49230.97980.975yesN/A
Q6CSA2YKT6_KLULA2, ., 3, ., 1, ., -0.48730.97980.975yesN/A
Q54ES8YKT6_DICDI2, ., 3, ., 1, ., -0.43280.97980.9653yesN/A
Q6C537YKT6_YARLI2, ., 3, ., 1, ., -0.48240.98990.985yesN/A
Q9CQW1YKT6_MOUSE2, ., 3, ., 1, ., -0.63450.98990.9949yesN/A
Q6DDU7YKT6A_XENLA2, ., 3, ., 1, ., -0.61420.98990.9949N/AN/A
Q3T000YKT6_BOVIN2, ., 3, ., 1, ., -0.63950.98990.9949yesN/A
Q6BSL0YKT6_DEBHA2, ., 3, ., 1, ., -0.49230.97980.975yesN/A
O15498YKT6_HUMAN2, ., 3, ., 1, ., -0.63450.98990.9949yesN/A
Q32N70YKT6B_XENLA2, ., 3, ., 1, ., -0.61920.98990.9949N/AN/A
Q7ZUN8YKT6_DANRE2, ., 3, ., 1, ., -0.63950.98990.9949yesN/A
O60073YKT6_SCHPO2, ., 3, ., 1, ., -0.48480.98991.0yesN/A
Q9ZRD6YKT61_ARATHNo assigned EC number0.460.97980.9798yesN/A
Q5EGY4YKT6_RAT2, ., 3, ., 1, ., -0.63450.98990.9949yesN/A
P36015YKT6_YEAST2, ., 3, ., 1, ., -0.46700.97980.975yesN/A
Q6FW27YKT6_CANGA2, ., 3, ., 1, ., -0.50540.90450.8780yesN/A
Q6P816YKT6_XENTR2, ., 3, ., 1, ., -0.61420.98990.9949yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
COG5143190 COG5143, SNC1, Synaptobrevin/VAMP-like protein [In 4e-39
pfam0095789 pfam00957, Synaptobrevin, Synaptobrevin 2e-17
pfam1377482 pfam13774, Longin, Regulated-SNARE-like domain 6e-16
>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score =  132 bits (333), Expect = 4e-39
 Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 8/178 (4%)

Query: 20  LKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGI 79
           L  +  L SFSFF R  V+E + F+SKT       ASR SI+ G+Y  H       +  +
Sbjct: 17  LSDAESLSSFSFFHRSKVKEVLRFLSKTS------ASRASIESGDYFFHYLKMSSGIVYV 70

Query: 80  LVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLAR-YQNPREAD 138
            +SD+EYP+++A+  + ++  EF K+         T   I    + + + + Y++P   D
Sbjct: 71  PISDKEYPNKLAYGYLNSIATEFLKSSALEQLIDDTV-GIMRVNIDKVIEKGYRDPSIQD 129

Query: 139 AMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCC 196
            + ++Q+EL+ETK +L+  IE VL R EKLD LV  S  L + SK F K+A+K+N CC
Sbjct: 130 KLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCC 187

Length = 190
>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin Back     alignment and domain information
>gnl|CDD|222370 pfam13774, Longin, Regulated-SNARE-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 199
KOG0861|consensus198 100.0
KOG0859|consensus217 100.0
COG5143190 SNC1 Synaptobrevin/VAMP-like protein [Intracellula 100.0
KOG0862|consensus216 99.97
KOG0860|consensus116 99.74
PF1377483 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3 99.73
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 99.71
PF04099142 Sybindin: Sybindin-like family ; InterPro: IPR0072 95.57
COG5143190 SNC1 Synaptobrevin/VAMP-like protein [Intracellula 94.45
PF09426141 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro 93.3
PF04086 279 SRP-alpha_N: Signal recognition particle, alpha su 80.97
KOG3369|consensus199 80.76
KOG1983|consensus993 80.26
PF04799171 Fzo_mitofusin: fzo-like conserved region; InterPro 80.22
>KOG0861|consensus Back     alignment and domain information 
Probab=100.00  E-value=8.7e-60  Score=361.64  Aligned_cols=197  Identities=59%  Similarity=0.984  Sum_probs=190.7

Q ss_pred             ceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCCCCceeEeeCceEEEEEEeCCCEEEEEE
Q psy130            2 VKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGILV   81 (199)
Q Consensus         2 ~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~~~k~s~~~~~~~~h~~~~~~~i~~~~i   81 (199)
                      ||||+|.|++++..+|.+|+.++|||+||||+|++++||+.|+++++++|.+|++|++++++.|.+|+|++.||++++++
T Consensus         1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~g~rqsvk~~~Y~~h~yvrndgL~~V~~   80 (198)
T KOG0861|consen    1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGPGQRQSVKHEEYLVHVYVRNDGLCGVLI   80 (198)
T ss_pred             CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCcccccccccceeEEEEEEecCCeeEEEE
Confidence            89999999999877899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHHH
Q psy130           82 SDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAV  161 (199)
Q Consensus        82 td~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdki  161 (199)
                      +|.+||.|+||.+|+++.++|....+..+|+......++||.|+.++.+|+||.++|+|.++|++|||+|.||+++|+.+
T Consensus        81 ~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~~~~~~L~~~l~kyqdP~ead~l~kvQ~EldETKiiLhkTiesV  160 (198)
T KOG0861|consen   81 ADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETADLSYPYLDTLLSKYQDPAEADPLLKVQNELDETKIILHKTIESV  160 (198)
T ss_pred             ecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcCCCchhHHHHHHHhcChhhhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888888986556667899999999999999999999999999999999999999999


Q ss_pred             HHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhccccC
Q psy130          162 LQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSL  198 (199)
Q Consensus       162 L~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~cc~~  198 (199)
                      |+||||||+||+||++|+.+|+.|+++|||.|+||.|
T Consensus       161 L~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~NsCC~i  197 (198)
T KOG0861|consen  161 LERGEKLDDLVSKSENLSLQSKMFYKSAKKTNSCCII  197 (198)
T ss_pred             HHccchHHHHHHHHHhhhHHHHHHHHHHhhcCCceec
Confidence            9999999999999999999999999999999999987

>KOG0859|consensus Back     alignment and domain information
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0862|consensus Back     alignment and domain information
>KOG0860|consensus Back     alignment and domain information
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses Back     alignment and domain information
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] Back     alignment and domain information
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold [] Back     alignment and domain information
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] Back     alignment and domain information
>KOG3369|consensus Back     alignment and domain information
>KOG1983|consensus Back     alignment and domain information
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
3kyq_A199 Lipid-Induced Conformational Switch Controls Fusion 2e-68
3bw6_A144 Crystal Structure Of The Longin Domain Of Yeast Ykt 3e-27
1iou_A140 Solution Structure Of Ykt6p (1-140) Length = 140 8e-27
2nup_C196 Crystal Structure Of The Human Sec23a24A HETERODIME 2e-06
4b93_A189 Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri 2e-06
2nps_A74 Crystal Structure Of The Early Endosomal Snare Comp 2e-04
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion Activity Of Longin Domain Snare Ykt6 Length = 199 Back     alignment and structure 
Iteration: 1

 Score =  254 bits (650), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/198 (63%), Positives = 160/198 (80%)
Query: 1   MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSI 60
           ++KL++L++ YK    AV+LK++YD+ SFSFFQR SVQEFMTF S+ +VERS   SR S+
Sbjct: 1   LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASV 60
Query: 61  KEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASIS 120
           KE EY+CHV+VR D+LAG++++D EYP RVA TL+  VL+EFSK V    WP G+ A+I 
Sbjct: 61  KEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH 120
Query: 121 FPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSM 180
           +  L  +L+RYQNPREAD M+K+Q ELDETKIILHNT+E++L+RGEKLDDLVSKSE L  
Sbjct: 121 YTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGT 180
Query: 181 QSKAFYKTARKTNSCCSL 198
           QSKAFYKTARK NSCC++
Sbjct: 181 QSKAFYKTARKQNSCCAI 198
>pdb|3BW6|A Chain A, Crystal Structure Of The Longin Domain Of Yeast Ykt6 Length = 144 Back     alignment and structure
>pdb|1IOU|A Chain A, Solution Structure Of Ykt6p (1-140) Length = 140 Back     alignment and structure
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 196 Back     alignment and structure
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 189 Back     alignment and structure
>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex Length = 74 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
3kyq_A199 YKT6, synaptobrevin homolog YKT6; V-snare homolog, 2e-67
3bw6_A144 Synaptobrevin homolog YKT6; YKT6P, farnesylation, 4e-61
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 2e-36
3b5n_A61 Synaptobrevin homolog 1; snare complex, syntaxin, 3e-20
1gl2_A65 Endobrevin; membrane protein, membrane fusion prot 5e-20
1n7s_A63 Vesicle-associated membrane protein 2; neuronal sn 2e-19
2nps_A74 VAMP-4, vesicle-associated membrane protein 4; ves 8e-19
1l4a_A80 Synaptobrevin; snare, snare complex, membrane fusi 2e-18
1sfc_A96 VAMP 2, protein (synaptobrevin 2); membrane fusion 2e-16
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 1e-15
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 1e-15
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199 Back     alignment and structure
 Score =  204 bits (520), Expect = 2e-67
 Identities = 125/198 (63%), Positives = 160/198 (80%)

Query: 1   MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSI 60
           ++KL++L++ YK    AV+LK++YD+ SFSFFQR SVQEFMTF S+ +VERS   SR S+
Sbjct: 1   LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASV 60

Query: 61  KEGEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASIS 120
           KE EY+CHV+VR D+LAG++++D EYP RVA TL+  VL+EFSK V    WP G+ A+I 
Sbjct: 61  KEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIH 120

Query: 121 FPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEAVLQRGEKLDDLVSKSEGLSM 180
           +  L  +L+RYQNPREAD M+K+Q ELDETKIILHNT+E++L+RGEKLDDLVSKSE L  
Sbjct: 121 YTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGT 180

Query: 181 QSKAFYKTARKTNSCCSL 198
           QSKAFYKTARK NSCC++
Sbjct: 181 QSKAFYKTARKQNSCCAI 198
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Length = 144 Back     alignment and structure
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196 Back     alignment and structure
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 61 Back     alignment and structure
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B Length = 63 Back     alignment and structure
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus} Length = 74 Back     alignment and structure
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Length = 80 Back     alignment and structure
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 96 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Length = 119 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
3kyq_A199 YKT6, synaptobrevin homolog YKT6; V-snare homolog, 100.0
2nut_C196 Vesicle-trafficking protein SEC22B; human copii SE 100.0
4b93_A189 Vesicle-associated membrane protein 7; endocytosis 100.0
3bw6_A144 Synaptobrevin homolog YKT6; YKT6P, farnesylation, 100.0
1gl2_A65 Endobrevin; membrane protein, membrane fusion prot 99.85
2nps_A74 VAMP-4, vesicle-associated membrane protein 4; ves 99.84
1n7s_A63 Vesicle-associated membrane protein 2; neuronal sn 99.83
3b5n_A61 Synaptobrevin homolog 1; snare complex, syntaxin, 99.83
4afi_A173 AP-3 complex subunit delta-1, vesicle-associated p 99.82
1l4a_A80 Synaptobrevin; snare, snare complex, membrane fusi 99.8
1sfc_A96 VAMP 2, protein (synaptobrevin 2); membrane fusion 99.8
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 99.8
2vx8_A169 Nucleoporin-like protein RIP, vesicle-associated m 99.75
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 99.71
1urq_A63 M-tomosyn isoform; transport protein, tomosyn-snar 99.7
3fie_C38 Fragment of vesicle-associated membrane protein 2; 98.53
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 98.27
2j3t_C145 Trafficking protein particle complex subunit 1, tr 96.52
2j3w_A142 Sedlin, trafficking protein particle complex prote 95.85
3cue_A219 Transport protein particle 23 kDa subunit; membran 95.21
2fz0_A149 R-snare NYV1P, V-snare component of the vacuolar s 94.42
3cue_C159 Transport protein particle 18 kDa subunit; membran 93.27
2j3t_D219 Trafficking protein particle complex subunit 4; tr 90.86
3tjz_C153 Coatomer subunit zeta-1; protein trafficking, golg 89.44
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 84.76
1w63_M 423 Adaptor-related protein complex 1, MU 1 subunit; e 82.89
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.9e-64  Score=405.80  Aligned_cols=198  Identities=63%  Similarity=1.027  Sum_probs=186.4

Q ss_pred             CceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCCCCceeEeeCceEEEEEEeCCCEEEEE
Q psy130            1 MVKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGIL   80 (199)
Q Consensus         1 ~~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~~~k~s~~~~~~~~h~~~~~~~i~~~~   80 (199)
                      |||||+|+|+++++++|++|++++|||+||||+|++++||+.|++|+|++++++++|+++++|+|.||+|+.++|++|+|
T Consensus         1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~   80 (199)
T 3kyq_A            1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVV   80 (199)
T ss_dssp             CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEE
T ss_pred             CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEE
Confidence            99999999999998899999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             EecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCCCCccHHHHHHhcCCchhhhHHHHHHHhHHHHHHHHHhhHHH
Q psy130           81 VSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEASISFPQLPQYLARYQNPREADAMTKIQEELDETKIILHNTIEA  160 (199)
Q Consensus        81 itd~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~f~~l~~l~~~y~~~~~~dkl~~i~~~v~evk~iM~~NIdk  160 (199)
                      |||++||+|+||.||++|.++|...|+...|......+++|+.|+++|++|+||++.|++.+++.+|+||++||++||++
T Consensus        81 itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~f~~l~~~m~~Y~dp~~~d~l~~~q~el~evk~iM~~NI~~  160 (199)
T 3kyq_A           81 IADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGHLSRYQNPREADPMSKVQAELDETKIILHNTMES  160 (199)
T ss_dssp             EEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCCCCTHHHHHHHTTSGGGCCCCHHHHHHHHTCCCEEESSGGG
T ss_pred             EECCCCCHHHHHHHHHHHHHHHHHhccchhhhcccccccccHHHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999866676555677889999999999999999999999999999999999999999


Q ss_pred             HHHhhhhHHHHHHhHHHHHHHHHHHHHHhhhhhccccC
Q psy130          161 VLQRGEKLDDLVSKSEGLSMQSKAFYKTARKTNSCCSL  198 (199)
Q Consensus       161 iL~Rge~Le~L~~kS~~L~~~s~~F~k~akkl~~cc~~  198 (199)
                      +|+|||+||+|++||++|+.+|+.|+++|+++|+||.|
T Consensus       161 vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lnsCc~~  198 (199)
T 3kyq_A          161 LLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNSCCAI  198 (199)
T ss_dssp             TSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-----
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999999999999999999987
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Back     alignment and structure
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A Back     alignment and structure
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A Back     alignment and structure
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus} Back     alignment and structure
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B Back     alignment and structure
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Back     alignment and structure
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum} Back     alignment and structure
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus} Back     alignment and structure
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Back     alignment and structure
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Back     alignment and structure
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 199
d1ioua_140 d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker 2e-57
d1ifqa_127 d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId 4e-10
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  175 bits (445), Expect = 2e-57
 Identities = 51/139 (36%), Positives = 85/139 (61%), Gaps = 2/139 (1%)

Query: 3   KLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKE 62
           +++ + +       A+ L    DL  F FF+R SV +FMTF ++T+  R+    RQSI+E
Sbjct: 2   RIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEE 61

Query: 63  GEYMCHVFVRGDNLAGILVSDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTGTEA--SIS 120
           G Y+ HV+ R + + G+L++D++YP R A+TL+  +L+E+  A P   W   TE   ++ 
Sbjct: 62  GNYIGHVYARSEGICGVLITDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALK 121

Query: 121 FPQLPQYLARYQNPREADA 139
             QL  Y+++YQ+P +ADA
Sbjct: 122 MKQLDTYISKYQDPSQADA 140
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
d1ioua_140 Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch 100.0
d1ifqa_127 Sec22b {Mouse (Mus musculus) [TaxId: 10090]} 99.8
d2vgls_142 Sigma2 adaptin (clathrin coat assembly protein AP1 93.89
d2vglm2141 Mu2 adaptin (clathrin coat assembly protein AP50) 92.89
d2j3wa1140 Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090] 92.31
d2fh5a1129 Signal recognition particle receptor alpha subunit 84.39
>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-39  Score=246.01  Aligned_cols=137  Identities=36%  Similarity=0.732  Sum_probs=128.2

Q ss_pred             ceeEEEEEEEeCCCcceeeeeccCCCCcceeeechHHHHHHHHHHHHHhhcCCCCceeEeeCceEEEEEEeCCCEEEEEE
Q psy130            2 VKLFALNILYKAPTSAVMLKSSYDLQSFSFFQRGSVQEFMTFVSKTMVERSQTASRQSIKEGEYMCHVFVRGDNLAGILV   81 (199)
Q Consensus         2 ~kl~~~~v~~~~~~~~~~l~~~~d~~~~~~f~r~~~~e~~~~~s~~i~~~~~~~~k~s~~~~~~~~h~~~~~~~i~~~~i   81 (199)
                      ||||+|+|+++++++|++|++++|+|+||||+|++++|++.|+||++++|+++++|+++++++|.||+|+..+|++|+||
T Consensus         1 Mkl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~g~r~sv~~~~y~~h~yv~~~gl~~l~i   80 (140)
T d1ioua_           1 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEEGNYIGHVYARSEGICGVLI   80 (140)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCSSSEEEEEETTEEEEEECCSSSCEEEEE
T ss_pred             CeEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCCCceEEEEcCCeEEEEEEeeCCEEEEEE
Confidence            99999999999888999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             ecCCCChHHHHHHHHHHHHHHhhcCCCCCCCCC--CcCCCCCccHHHHHHhcCCchhhh
Q psy130           82 SDQEYPHRVAHTLITNVLNEFSKAVPPSSWPTG--TEASISFPQLPQYLARYQNPREAD  138 (199)
Q Consensus        82 td~~~p~~~af~fL~~i~~~f~~~~~~~~~~~~--~~~~~~f~~l~~l~~~y~~~~~~d  138 (199)
                      ||.+||+|+||.||+++.++|...|+...|...  ..+++.|+.|+++|++|+||+++|
T Consensus        81 ~d~~Yp~r~AF~~L~~i~~eF~~~~~~~~~~~i~~~~~~~~~~~l~~~l~kYQdP~~aD  139 (140)
T d1ioua_          81 TDKQYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQAD  139 (140)
T ss_dssp             BCTTSCHHHHHHHHHHHHHHHHHSSCHHHHTTCSCCCTTTSCHHHHHHHHHTTSSCGGG
T ss_pred             ECCCcchHHHHHHHHHHHHHHHHHcChHhhhhhhccccccchHHHHHHHHHhCchhhcc
Confidence            999999999999999999999999986656532  345667899999999999999877
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure