Psyllid ID: psy13101

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
LSLIDKNWTEGADYERVESPILCHDGESIQGSHVTSRDEHLELEFQLEDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGLLPFLLPFCRRKLSKILSRGLGVGNINLWDIVKFTSGRGRIISIHIA
ccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHccccHHHHHHHcccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHcccHHHHcccccHHHHHHHccccccEEccccccEEEEEcccccHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHccccccccccccEEEEcccccccHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccEEEEEcccccEEEEEEEc
cccEccccEcccccccccccEEEcccccccccccccccccEEHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHccccccccccccccEHHHHHcccccHHccHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHccccccccccccccEEEEEcccccHHHHEEEccHHHHHHHHHHHHHHHHHHccHHHHHcccccccEEEEEEccccccHcccHHHHHHHHHHHHHcccccccHHcEEEEEEcccccHHHHHHccccccHccHcEEEEEcccccccccccEEEccHHHccHHccccEEcccccccccccccccccHHHHHHHHHccccccccccEEEEEEcccccEEEEEEc
lslidknwtegadyervespilchdgesiqgshvtsrdehleLEFQLEDDYIHRClgdltpmqesKLIQFKKQFgylqkgklpsdstLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILqqyeappvvrayftgtwhhcdremrplYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILqqyeappvvrayftgtwhhcdremrplYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTrkysrpittWSLLIDleglnmrhlwRPGVKALLRIIEIVEtnypetlgRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGndyqsagglIDYIEqqyipdflggpcetklpeggllpfllPFCRRKLSKILSrglgvgninLWDIVKftsgrgriisIHIA
lslidknwtegadyERVESPILCHDGESIQGSHVTSRDEHLELEFQLEDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSkdfnlekgreSLSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQilqqyeappVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTeeytrkysrpiTTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVEtnypetlgrvLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGLLPFLLPFCRRKLSKIlsrglgvgninlwdivkftsgrgriisihia
LSLIDKNWTEGADYERVESPILCHDGESIQGSHVTSRDEHLELEFQLEDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKlpeggllpfllpfCRRKLSKILSRGLGVGNINLWDIVKFTSGRGRIISIHIA
*************YERVESPILCHDG************EHLELEFQLEDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDF************LTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGLLPFLLPFCRRKLSKILSRGLGVGNINLWDIVKFTSGRGRIISIH**
LSLIDKN***********************************************CLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGLLPFLLPFCRRKLSK************LWDIVKFTSGRGR***IHIA
LSLIDKNWTEGADYERVESPILCHDGESIQGSHVTSRDEHLELEFQLEDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGLLPFLLPFCRRKLSKILSRGLGVGNINLWDIVKFTSGRGRIISIHIA
LSLIDKNWTEGADYERVESPILCHDGE*IQ*SHVTSRDEHLELEFQLEDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGLLPFLLPFCRRKLSKILSRGLGVGNINLWDIVKFTSGRGRIISIHIA
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LSLIDKNWTEGADYERVESPILCHDGESIQGSHVTSRDEHLELEFQLEDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCETKLPEGGLLPFLLPFCRRKLSKILSRGLGVGNINLWDIVKFTSGRGRIISIHIA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query420 2.2.26 [Sep-21-2011]
Q92503 715 SEC14-like protein 1 OS=H yes N/A 0.480 0.282 0.628 2e-76
Q0V9N0 707 SEC14-like protein 5 OS=X no N/A 0.485 0.288 0.587 3e-74
Q16KN5 646 Protein real-time OS=Aede N/A N/A 0.492 0.320 0.620 2e-72
Q9VMD6 659 Protein real-time OS=Dros yes N/A 0.490 0.312 0.574 1e-71
O43304 696 SEC14-like protein 5 OS=H no N/A 0.490 0.295 0.582 2e-71
Q29JQ0 669 Protein real-time OS=Dros yes N/A 0.490 0.307 0.579 5e-71
Q7PWB1 684 Protein real-time OS=Anop yes N/A 0.471 0.289 0.628 7e-71
Q03606 719 CRAL-TRIO domain-containi yes N/A 0.490 0.286 0.526 1e-64
Q8R0F9403 SEC14-like protein 4 OS=M no N/A 0.485 0.506 0.327 1e-29
Q9UDX3406 SEC14-like protein 4 OS=H no N/A 0.538 0.556 0.312 3e-28
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2 Back     alignment and function desciption
 Score =  286 bits (732), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 163/202 (80%)

Query: 175 SLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGE 234
           SLTWRK+H VD IL+ +  P V++ Y+ G WHH D++ RPLY+ +LG MD KG ++ +GE
Sbjct: 301 SLTWRKQHQVDYILETWTPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGE 360

Query: 235 DGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEI 294
           + LL+  + + EEGL   EE T+ + RPI++W+ L+DLEGLNMRHLWRPGVKALLRIIE+
Sbjct: 361 EALLRYVLSINEEGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEV 420

Query: 295 VETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQ 354
           VE NYPETLGR+LI+RAPRVFP+LWTLVS FID+ TR KFL+YAGNDYQ  GGL+DYI++
Sbjct: 421 VEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDK 480

Query: 355 QYIPDFLGGPCETKLPEGGLLP 376
           + IPDFL G C  ++PEGGL+P
Sbjct: 481 EIIPDFLSGECMCEVPEGGLVP 502

Homo sapiens (taxid: 9606)
>sp|Q0V9N0|S14L5_XENTR SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1 Back     alignment and function description
>sp|Q16KN5|RETM_AEDAE Protein real-time OS=Aedes aegypti GN=retm PE=3 SV=1 Back     alignment and function description
>sp|Q9VMD6|RETM_DROME Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2 Back     alignment and function description
>sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3 Back     alignment and function description
>sp|Q29JQ0|RETM_DROPS Protein real-time OS=Drosophila pseudoobscura pseudoobscura GN=retm PE=3 SV=1 Back     alignment and function description
>sp|Q7PWB1|RETM_ANOGA Protein real-time OS=Anopheles gambiae GN=retm PE=3 SV=4 Back     alignment and function description
>sp|Q03606|YN02_CAEEL CRAL-TRIO domain-containing protein T23G5.2 OS=Caenorhabditis elegans GN=T23G5.2 PE=4 SV=3 Back     alignment and function description
>sp|Q8R0F9|S14L4_MOUSE SEC14-like protein 4 OS=Mus musculus GN=Sec14l4 PE=2 SV=1 Back     alignment and function description
>sp|Q9UDX3|S14L4_HUMAN SEC14-like protein 4 OS=Homo sapiens GN=SEC14L4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
444731805 806 SEC14-like protein 5 [Tupaia chinensis] 0.690 0.359 0.492 2e-86
410902125 695 PREDICTED: SEC14-like protein 1-like [Ta 0.630 0.381 0.477 4e-82
193699929 658 PREDICTED: SEC14-like protein 1 [Acyrtho 0.580 0.370 0.595 6e-82
383857589 662 PREDICTED: protein real-time-like [Megac 0.635 0.403 0.477 1e-81
357627270 733 SEC14-like protein 1 [Danaus plexippus] 0.490 0.281 0.684 4e-81
242003549 584 conserved hypothetical protein [Pediculu 0.585 0.421 0.586 8e-81
307205698 669 Protein real-time [Harpegnathos saltator 0.635 0.399 0.480 9e-81
328779851 665 PREDICTED: protein real-time-like [Apis 0.635 0.401 0.471 9e-80
350412874 665 PREDICTED: protein real-time-like [Bombu 0.635 0.401 0.471 1e-79
380011060 655 PREDICTED: LOW QUALITY PROTEIN: protein 0.635 0.407 0.468 5e-79
>gi|444731805|gb|ELW72150.1| SEC14-like protein 5 [Tupaia chinensis] Back     alignment and taxonomy information
 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 163/331 (49%), Positives = 218/331 (65%), Gaps = 41/331 (12%)

Query: 46  QLEDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRES 105
           +L+ DYI RCLG LTPMQES LIQ +       KGK+P D  +LRFL+++DF+L+K RE 
Sbjct: 252 KLDADYIERCLGHLTPMQESCLIQLRHWLQETHKGKIPKDEHILRFLRARDFHLDKAREM 311

Query: 106 LSQSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKT 165
           L QSL+WRK+H VD +LQ +  P ++  ++ G WH+ D + RPLY+ +LG MD KG +K 
Sbjct: 312 LCQSLSWRKQHQVDLLLQTWRPPALLEEFYAGGWHYQDIDGRPLYILRLGQMDTKGLMKA 371

Query: 166 VGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDV 225
           VGE+ LL+         +V Q L   +                    RPLY+ +LG MD 
Sbjct: 372 VGEEALLQ---------HVSQALLGPDG-------------------RPLYILRLGQMDT 403

Query: 226 KGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGV 285
           KG +K VGE+ LL+  + V EEG               ++W+ L+DLEGLNMRHLWR G 
Sbjct: 404 KGLMKAVGEEALLQHVLSVNEEGQK-------------SSWTCLLDLEGLNMRHLWRAGG 450

Query: 286 KALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSA 345
           +ALLR+I++VE NYPETLGR+LI+RAPRVFP+LWTL+S FI+E TR KFL+Y+G+ YQ  
Sbjct: 451 EALLRMIKVVEDNYPETLGRLLILRAPRVFPVLWTLISPFINENTRRKFLIYSGSHYQGP 510

Query: 346 GGLIDYIEQQYIPDFLGGPCETKLPEGGLLP 376
           GGL+DY+++  IPDFLGG     +PEGGL+P
Sbjct: 511 GGLVDYLDKDVIPDFLGGESVCNVPEGGLVP 541

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|410902125|ref|XP_003964545.1| PREDICTED: SEC14-like protein 1-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|193699929|ref|XP_001951096.1| PREDICTED: SEC14-like protein 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|383857589|ref|XP_003704287.1| PREDICTED: protein real-time-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|357627270|gb|EHJ77007.1| SEC14-like protein 1 [Danaus plexippus] Back     alignment and taxonomy information
>gi|242003549|ref|XP_002422770.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505613|gb|EEB10032.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|307205698|gb|EFN83960.1| Protein real-time [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|328779851|ref|XP_623913.2| PREDICTED: protein real-time-like [Apis mellifera] Back     alignment and taxonomy information
>gi|350412874|ref|XP_003489797.1| PREDICTED: protein real-time-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380011060|ref|XP_003689631.1| PREDICTED: LOW QUALITY PROTEIN: protein real-time-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
UNIPROTKB|E1BWX8 681 SEC14L1 "Uncharacterized prote 0.464 0.286 0.630 4.9e-69
UNIPROTKB|F1RZ70 701 SEC14L1 "Uncharacterized prote 0.454 0.272 0.638 1.3e-68
UNIPROTKB|Q92503 715 SEC14L1 "SEC14-like protein 1" 0.454 0.267 0.633 2.7e-68
UNIPROTKB|A7MBE2 715 SEC14L1 "SEC14L1 protein" [Bos 0.454 0.267 0.633 3.5e-68
UNIPROTKB|F1Q1I6 719 SEC14L1 "Uncharacterized prote 0.454 0.265 0.633 3.5e-68
RGD|1563123 720 Sec14l1 "SEC14-like 1 (S. cere 0.454 0.265 0.633 4.4e-68
UNIPROTKB|Q7PWB1 684 retm "Protein real-time" [Anop 0.569 0.349 0.551 7.2e-68
UNIPROTKB|F1P060 719 SEC14L5 "Uncharacterized prote 0.464 0.271 0.615 5.1e-67
UNIPROTKB|Q16KN5 646 retm "Protein real-time" [Aede 0.469 0.304 0.626 9.4e-66
ZFIN|ZDB-GENE-040426-801 697 sec14l1 "SEC14-like 1 (S. cere 0.45 0.271 0.608 2.5e-65
UNIPROTKB|E1BWX8 SEC14L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
 Identities = 123/195 (63%), Positives = 156/195 (80%)

Query:   171 LLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLK 230
             +L  SLTWRK+H VD IL  +  P V++ Y+ G WHH D++ RPLY+ +LG MD KG ++
Sbjct:   263 ILCQSLTWRKQHQVDYILDTWNPPQVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVR 322

Query:   231 TVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLR 290
              +GE+ LL+  + + EEGL   EE T+ + RPI++W+ L+DLEGLNMRHLWRPGVKALLR
Sbjct:   323 ALGEEALLRYVLSINEEGLRRCEENTKVFGRPISSWTCLVDLEGLNMRHLWRPGVKALLR 382

Query:   291 IIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLID 350
             IIE+VE NYPETLGR+LI+RAPRVFP+LWTLVS FID+ TR KFL+YAGNDYQ  GGL+D
Sbjct:   383 IIEVVEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNTRKKFLIYAGNDYQGPGGLLD 442

Query:   351 YIEQQYIPDFLGGPC 365
             YI+++ IPDFLGG C
Sbjct:   443 YIDKEIIPDFLGGEC 457
GO:0006810 "transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
UNIPROTKB|F1RZ70 SEC14L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q92503 SEC14L1 "SEC14-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBE2 SEC14L1 "SEC14L1 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q1I6 SEC14L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1563123 Sec14l1 "SEC14-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7PWB1 retm "Protein real-time" [Anopheles gambiae (taxid:7165)] Back     alignment and assigned GO terms
UNIPROTKB|F1P060 SEC14L5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q16KN5 retm "Protein real-time" [Aedes aegypti (taxid:7159)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-801 sec14l1 "SEC14-like 1 (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q29JQ0RETM_DROPSNo assigned EC number0.57970.49040.3079yesN/A
Q7PWB1RETM_ANOGANo assigned EC number0.62810.47140.2894yesN/A
Q03606YN02_CAEELNo assigned EC number0.52650.49040.2865yesN/A
Q9VMD6RETM_DROMENo assigned EC number0.57480.49040.3125yesN/A
Q92503S14L1_HUMANNo assigned EC number0.62870.48090.2825yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 6e-36
smart00516158 smart00516, SEC14, Domain in homologues of a S 2e-32
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 7e-28
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 0.003
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 0.004
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information 
 Score =  128 bits (325), Expect = 6e-36
 Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 13/164 (7%)

Query: 200 YFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKY 259
              G  H  D+E RP+   + G  D K        + L++  + V E  L L  E     
Sbjct: 1   GGKGYLHGRDKEGRPVLYLRPGRHDPK----KSSLEELVRFLVLVLERALLLLPE----- 51

Query: 260 SRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILW 319
              I   +++ID++GL++ ++ +  +  L +I++I++ NYPE LG++LI+ AP +F ++W
Sbjct: 52  -GQIEGITVIIDMKGLSLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIW 110

Query: 320 TLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGG 363
            L+  F+D  TR K   +  ++ +    L+ YI  + +P   GG
Sbjct: 111 KLIKPFLDPKTREKIHFHKNSNLEE---LLKYIPPEQLPKEYGG 151

Length = 152
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 420
KOG1471|consensus317 100.0
KOG1470|consensus324 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.95
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.92
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.37
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.82
KOG4406|consensus 467 97.77
>KOG1471|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.7e-40  Score=327.43  Aligned_cols=274  Identities=31%  Similarity=0.541  Sum_probs=225.0

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHhhhhhCCC--CCChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcChhhhhhhcC
Q psy13101         49 DDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGK--LPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYE  126 (420)
Q Consensus        49 ~~~~~~~l~~l~~~~~~~l~~lr~~l~~~~~~~--~~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~~d~i~~~~~  126 (420)
                      .+.+..+++++++.+++.++++| |+...+++.  ..||.+|+||||||+||+++|+++|.+++.||+++.+|+++.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~i~~lr-~~~~~~~l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~   86 (317)
T KOG1471|consen    8 AKVAKEELNEITESEEAVIAQLR-WLLQKPHLPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFE   86 (317)
T ss_pred             ccccccccCCCcHHHHHHHHHHH-HHhhccCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccc
Confidence            34667788999999999999999 777766654  468899999999999999999999999999999999998876532


Q ss_pred             CchhhhhhccCcccccCCCCCcceeeeccccccccccccccchhhhhhhhhhhhccchhhhhhhccCccchhhccccccc
Q psy13101        127 APPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWH  206 (420)
Q Consensus       127 ~~~~~~~~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~r~~~~v~~i~~~~~~~~~~~~~~p~~~~  206 (420)
                      ....                                                                  ...+.|++++
T Consensus        87 ~~~~------------------------------------------------------------------~~~~~~~~~~  100 (317)
T KOG1471|consen   87 EDDE------------------------------------------------------------------LLKYYPQGLH  100 (317)
T ss_pred             cchh------------------------------------------------------------------hhhhcccccc
Confidence            2111                                                                  1124455678


Q ss_pred             ccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHh-hHHHHhhcCCCcccEEEEEECCCCCcCCccchhH
Q psy13101        207 HCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLAL-TEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGV  285 (420)
Q Consensus       207 g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~  285 (420)
                      |.|+.|+|+++.+.|..|.+.++..+...+..++.+..+|..... ++......+.++.|++.|+|++|++++|++++.+
T Consensus       101 ~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~  180 (317)
T KOG1471|consen  101 GVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAP  180 (317)
T ss_pred             ccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHH
Confidence            999999999999999999999999999999999999999988754 3434444457899999999999999999998889


Q ss_pred             HHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCccCCCCC
Q psy13101        286 KALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPC  365 (420)
Q Consensus       286 ~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG~~  365 (420)
                      +.+++++.++|++||++++++||||+|++|+++|+++||||+++|++||+++++++   .++|.++|++++||++|||++
T Consensus       181 ~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~---~~~L~k~i~~~~LP~~yGG~~  257 (317)
T KOG1471|consen  181 TLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKD---KESLLKYIPPEVLPEEYGGTC  257 (317)
T ss_pred             HHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCc---hhhhhhhCCHhhCccccCCCc
Confidence            99999999999999999999999999999999999999999999999999655443   348999999999999999999


Q ss_pred             CcCCC-CC--CcCCCCCccchhhHHHHHhh
Q psy13101        366 ETKLP-EG--GLLPFLLPFCRRKLSKILSR  392 (420)
Q Consensus       366 ~~~~~-~~--~~~p~~~~~~~~~~~~~~~~  392 (420)
                      .+... .+  ..+.......+.........
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (317)
T KOG1471|consen  258 GDLDDPNGGGCDLSDEGPWKEPEIKKGKQE  287 (317)
T ss_pred             cccccccCCcCccccccccccccccccccc
Confidence            98521 12  24444444444444443333

>KOG1470|consensus Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
1olm_E 403 Supernatant Protein Factor In Complex With Rrr-Alph 4e-27
1olm_A 403 Supernatant Protein Factor In Complex With Rrr-Alph 4e-27
1o6u_A 403 The Crystal Structure Of Human Supernatant Protein 2e-25
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 1e-16
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 2e-13
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 3e-13
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure 
Iteration: 1

 Score =  119 bits (298), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 108/195 (55%), Gaps = 4/195 (2%)
Query: 169 DGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGF 228
           + +L+  + +RK+ ++D I+  ++ P V++ Y +G     D +  P++   +G +D KG 
Sbjct: 53  EAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGL 111
Query: 229 LKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKAL 288
           L +  +  LL+  M  CE  L      T K  R + T +++ D EGL ++HLW+P V+A 
Sbjct: 112 LFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAY 171
Query: 289 LRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGL 348
              + + E NYPETL R+ +++AP++FP+ + L+  F+ E TR K +V   N  +    L
Sbjct: 172 GEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEV---L 228
Query: 349 IDYIEQQYIPDFLGG 363
           + +I    +P   GG
Sbjct: 229 LKHISPDQVPVEYGG 243
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 2e-57
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 1e-28
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 8e-56
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 1e-52
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 6e-25
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 1e-38
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 1e-13
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 8e-37
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 4e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
 Score =  189 bits (482), Expect = 2e-57
 Identities = 52/208 (25%), Positives = 94/208 (45%), Gaps = 7/208 (3%)

Query: 171 LLKLSLTWRKRHNVDQILQQYEAPP--VVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGF 228
           + +    WRK +  D ILQ +      ++  ++   +H  D++ RP+Y  +LG +++   
Sbjct: 72  MFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEM 131

Query: 229 LKTVGEDGLLKLAMHVCEEGLALT-EEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKA 287
            K   E+ +LK  +   E  +       +R     + T   ++DL+G+++   +   +  
Sbjct: 132 NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV-MSY 190

Query: 288 LLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGG 347
           +     I +  YPE +G+  II AP  F   + L   F+D  T SK  +  G+ YQ    
Sbjct: 191 VREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFIL-GSSYQKE-- 247

Query: 348 LIDYIEQQYIPDFLGGPCETKLPEGGLL 375
           L+  I  + +P   GG  E    +GGL 
Sbjct: 248 LLKQIPAENLPVKFGGKSEVDESKGGLY 275
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 98.94
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 98.66
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 82.25
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 80.79
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
Probab=100.00  E-value=7.6e-51  Score=399.52  Aligned_cols=266  Identities=25%  Similarity=0.446  Sum_probs=226.7

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHhhhhhCCCCCChHHHHHHHhhCCCCHHHHHHHHHHHHHHHHhcChhhhhhhcCC
Q psy13101         48 EDDYIHRCLGDLTPMQESKLIQFKKQFGYLQKGKLPSDSTLLRFLKSKDFNLEKGRESLSQSLTWRKRHNVDQILQQYEA  127 (420)
Q Consensus        48 ~~~~~~~~l~~l~~~~~~~l~~lr~~l~~~~~~~~~dd~~LlRFLra~k~dve~A~~~l~~~~~wR~~~~~d~i~~~~~~  127 (420)
                      +++...+++++++++|+++|++||+|+++.+.....||.+|+||||||+||+++|.++|+++++||+++++|+++.++.+
T Consensus        24 ~~~~~~g~~~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~  103 (320)
T 3q8g_A           24 SPNALPGTPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYEN  103 (320)
T ss_dssp             CTTSCTTSTTCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence            34467889999999999999999999999876667899999999999999999999999999999999999998866432


Q ss_pred             chhhhhhccCcccccCCCCCcceeeeccccccccccccccchhhhhhhhhhhhccchhhhhhhccCccchhhcccccccc
Q psy13101        128 PPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLSLTWRKRHNVDQILQQYEAPPVVRAYFTGTWHH  207 (420)
Q Consensus       128 ~~~~~~~~~~g~~~~d~~~~P~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~r~~~~v~~i~~~~~~~~~~~~~~p~~~~g  207 (420)
                      +.....                                   .+             .          +.+..++|++++|
T Consensus       104 ~~~~~~-----------------------------------~e-------------~----------~~~~~~~~~~~~g  125 (320)
T 3q8g_A          104 NKEAED-----------------------------------KE-------------R----------IKLAKMYPQYYHH  125 (320)
T ss_dssp             THHHHH-----------------------------------HH-------------H----------HHHHTTSCEEEEE
T ss_pred             ccccch-----------------------------------hH-------------H----------HHHHHhCCceecC
Confidence            210000                                   00             0          0123345667789


Q ss_pred             cCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHh-hHHHHhhcCCCcccEEEEEECCCCCcCCccchhHH
Q psy13101        208 CDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLAL-TEEYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVK  286 (420)
Q Consensus       208 ~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~-~~~~~~~~g~~v~~~v~IiDl~g~sl~~~~~~~~~  286 (420)
                      +|++||||+|+++|++|++++.+..+.+++++++++.+|.+++. ++.+++..|.+++++++|+|++|+|++++++. ++
T Consensus       126 ~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~-~~  204 (320)
T 3q8g_A          126 VDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHV-LS  204 (320)
T ss_dssp             ECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHT-HH
T ss_pred             CCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHH-HH
Confidence            99999999999999999998887789999999999999998753 45567778888999999999999999998653 67


Q ss_pred             HHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccccCCCCccCCCCCC
Q psy13101        287 ALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGGPCE  366 (420)
Q Consensus       287 ~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~~~~LP~~yGG~~~  366 (420)
                      .++.++.++|++||+|++++||||+|++|+++|+++||||+++|++||+|+ ++++.  ++|.++||+++||++|||+++
T Consensus       205 ~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~-~~~~~--~~L~~~i~~~~LP~~yGG~~~  281 (320)
T 3q8g_A          205 YIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFIL-GSSYK--KELLKQIPIENLPVKYGGTSV  281 (320)
T ss_dssp             HHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEEC-CTTHH--HHHHHHSCGGGSBGGGTSCBC
T ss_pred             HHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEe-CCCcH--HHHHhhCChhhCChhhCCCCC
Confidence            889999999999999999999999999999999999999999999999997 45543  489999999999999999999


Q ss_pred             cCCCCCCcC
Q psy13101        367 TKLPEGGLL  375 (420)
Q Consensus       367 ~~~~~~~~~  375 (420)
                      +....+||.
T Consensus       282 ~~~~~ggc~  290 (320)
T 3q8g_A          282 LHNPNDKFY  290 (320)
T ss_dssp             CSSTTSCGG
T ss_pred             CCCCCCCee
Confidence            865556665
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 420
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 1e-41
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 3e-08
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 2e-38
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 2e-23
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 5e-16
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 4e-15
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 2e-08
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 1e-41
 Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 12/192 (6%)

Query: 194 PPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTE 253
           P V++ Y +G     D +  P++   +G +D KG L +  +  LL+  M  CE  L    
Sbjct: 2   PEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECA 61

Query: 254 EYTRKYSRPITTWSLLIDLEGLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPR 313
             T K  R + T +++ D EGL ++HLW+P V+A    + + E NYPETL R+ +++AP+
Sbjct: 62  HQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPK 121

Query: 314 VFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIEQQYIPDFLGG---------P 364
           +FP+ + L+  F+ E TR K +V   N  +    L+ +I    +P   GG          
Sbjct: 122 LFPVAYNLIKPFLSEDTRKKIMVLGANWKEV---LLKHISPDQVPVEYGGTMTDPDGNPK 178

Query: 365 CETKLPEGGLLP 376
           C++K+  GG +P
Sbjct: 179 CKSKINYGGDIP 190
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.98
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.67
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.67
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.41
d1olma3199 Supernatant protein factor (SPF), middle domain {H 96.21
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 95.32
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 83.25
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-39  Score=293.50  Aligned_cols=185  Identities=31%  Similarity=0.598  Sum_probs=168.6

Q ss_pred             ccchhhcccccccccCCCCCcEEEEecCCCChhhhhhcCCHHHHHHHHHHHHHHHHHhhHHHHhhcCCCcccEEEEEECC
Q psy13101        194 PPVVRAYFTGTWHHCDREMRPLYLFKLGVMDVKGFLKTVGEDGLLKLAMHVCEEGLALTEEYTRKYSRPITTWSLLIDLE  273 (420)
Q Consensus       194 ~~~~~~~~p~~~~g~D~~GrpV~i~r~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~g~~v~~~v~IiDl~  273 (420)
                      |+.+..|+|++++|+|++||||+++|+|++|++++.+..+.++++++.++.+|.+++.+..++...+.+++++++|+|++
T Consensus         2 p~~i~~~~p~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~   81 (199)
T d1olma3           2 PEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCE   81 (199)
T ss_dssp             CHHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECT
T ss_pred             cHHHHHHCCCccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECC
Confidence            45678899999999999999999999999999999888999999999999999999888888788888999999999999


Q ss_pred             CCCcCCccchhHHHHHHHHHHHHhhcccccceEEEEcCCCcHHHHHHHhhhccChhccceEEEecCCCcCchhHHHhccc
Q psy13101        274 GLNMRHLWRPGVKALLRIIEIVETNYPETLGRVLIIRAPRVFPILWTLVSTFIDETTRSKFLVYAGNDYQSAGGLIDYIE  353 (420)
Q Consensus       274 g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~IvN~P~~f~~~~~lvkpfL~~~t~~KI~~~~~~~~~~~~~L~~~I~  353 (420)
                      |+|+++++++.++.++++++++|++||||++++||||+|++|+++|+++||||+++|++||+|++ ++..  +.|.++|+
T Consensus        82 g~s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~-~~~~--~~L~~~i~  158 (199)
T d1olma3          82 GLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLG-ANWK--EVLLKHIS  158 (199)
T ss_dssp             TCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECC-TTHH--HHHTTTSC
T ss_pred             CCchhhhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeC-CCCH--HHHHHhCC
Confidence            99999999888899999999999999999999999999999999999999999999999999974 4443  48999999


Q ss_pred             cCCCCccCCCCCCcC---------CCCCCcCCCCCcc
Q psy13101        354 QQYIPDFLGGPCETK---------LPEGGLLPFLLPF  381 (420)
Q Consensus       354 ~~~LP~~yGG~~~~~---------~~~~~~~p~~~~~  381 (420)
                      +++||++|||+++++         +..+|.+|+.+|.
T Consensus       159 ~~~lP~~yGGt~~~~~~~~~~~~~~~~~~~~p~~~~~  195 (199)
T d1olma3         159 PDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYV  195 (199)
T ss_dssp             GGGSBGGGTSSBCCTTCCTTCTTTCBCCCCCCGGGCS
T ss_pred             HhhCCHHhCCCCCCCCCChhhhccCCCCCcCCHHHhh
Confidence            999999999998653         3457778877754
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure