Psyllid ID: psy13110

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180---
Protein Sequence
MSVDISALYHQRALWCGGTTKAIMSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEHHHHccHEEEcccccHHcccccccccccccEccccccccccccccccccccccccccccccccccccccccEEEEEEEccHcHHcHHHHHHHcccccccccccccccEEEEEEcEEEccccEEEcccHHHHHHHHHccccHHHHHHcHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MSVDISALYHQRAlwcggttkaimsdeedkppappvrltsnnsfrgvrgdpppphhhyapspvdlkplpkepepeertgkkhsksakhsgapkgsrstrrpeaekpvisnptnfehtvhvgfdahtgeftgmPEAWARLLMSSNIskleqkknpqAVLDVLNWfdnstkeakgskymtttrmm
Flexible Loop (DISEMBL)
MSVDISALYHQRALWCGGTTKAIMSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEertgkkhsksakhsgapkgsrstrrpeaekpvisnptnfehTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDvlnwfdnstkeakgskymtttrmm
Low Complexity Region (SEG)
MSVDISALYHQRALWCGGTTKAIMSDEEDKPPAPPVRLTSNNSFRGVRGDpppphhhyapspVDlkplpkepepeeRTgkkhsksakhsgapkgsRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM
Disordered region (IsUnstruct)
*****************************************************************************************************************FEHTVHVGFDAHTGEFTGMPEAWARLLMSSN**********QAVLDVLNWFD******************
Disordered Region (DISOPRED)
*SVDISALYHQRALWCGGT*********************************************************************************************NFEHTVHVGFDAHTGEFTGMPEAWARLLM**************AVLDVLNWF************MTTTRMM
Disordered Region (DISEMBL)
MSVDISALYHQRALWCGGTTKAIMSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLP************************************PVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM
Disordered Region (DISPRO)
*SVDISALYHQRALWCGGTTKAIMSDEEDKPPAPPV******************************PLPKE**PEERTGKKHSKSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNST***************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVDISALYHQRALWCGGTTKAIMSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	183	2.2.26 [Sep-21-2011]
Q62829	544	Serine/threonine-protein	yes	N/A	0.743	0.25	0.490	2e-32
P35465	544	Serine/threonine-protein	no	N/A	0.765	0.257	0.516	1e-31
Q08E52	544	Serine/threonine-protein	yes	N/A	0.765	0.257	0.503	1e-30
Q13153	545	Serine/threonine-protein	no	N/A	0.765	0.256	0.503	1e-30
O88643	545	Serine/threonine-protein	no	N/A	0.765	0.256	0.503	2e-30
Q64303	524	Serine/threonine-protein	no	N/A	0.765	0.267	0.5	8e-30
Q13177	524	Serine/threonine-protein	no	N/A	0.765	0.267	0.506	9e-30
Q29502	524	Serine/threonine-protein	no	N/A	0.765	0.267	0.5	1e-29
Q8CIN4	524	Serine/threonine-protein	no	N/A	0.765	0.267	0.5	1e-29
Q61036	559	Serine/threonine-protein	yes	N/A	0.743	0.243	0.447	2e-29

>sp|Q62829|PAK3_RAT Serine/threonine-protein kinase PAK 3 OS=Rattus norvegicus GN=Pak3 PE=1 SV=1

 Score =  138 bits (348), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/155 (49%), Positives = 98/155 (63%), Gaps = 19/155 (12%)

Query: 26  DEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKS 85
           D E+KPPAPP+R+ SNN       D    +H   P P+          PEE+  K   +S
Sbjct: 6   DNEEKPPAPPLRMNSNNR------DSSALNHSSKPLPM---------APEEKNKKARLRS 50

Query: 86  AKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNI 145
               G   G ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTG+PE WARLL +SNI
Sbjct: 51  IFPGG---GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNI 107

Query: 146 SKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
           +KLEQKKNPQAVLDVL ++D S +     KYM+ T
Sbjct: 108 TKLEQKKNPQAVLDVLKFYD-SKETVNNQKYMSFT 141

Serine/threonine protein kinase that plays a role in a variety of different signaling pathways including cytoskeleton regulation, cell migration, or cell cycle regulation. Plays a role in dendrite spine morphogenesis as well as synapse formation and plasticity. Acts as downstream effector of the small GTPases CDC42 and RAC1. Activation by the binding of active CDC42 and RAC1 results in a conformational change and a subsequent autophosphorylation on several serine and/or threonine residues. Phosphorylates MAPK4 and MAPK6 and activates the downstream target MAPKAPK5, a regulator of F-actin polymerization and cell migration. Additionally, phosphorylates TNNI3/troponin I to modulate calcium sensitivity and relaxation kinetics of thin myofilaments.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|P35465|PAK1_RAT Serine/threonine-protein kinase PAK 1 OS=Rattus norvegicus GN=Pak1 PE=1 SV=3

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/155 (51%), Positives = 99/155 (63%), Gaps = 15/155 (9%)

Query: 26  DEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKS 85
           D +DKPPAPP+R TS     G + DP   +H         KPLP  P PEE    K  K 
Sbjct: 7   DVQDKPPAPPMRNTSTMIGAGSK-DPGTLNHGS-------KPLP--PNPEE----KKKKD 52

Query: 86  AKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNI 145
             +     G ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI
Sbjct: 53  RFYRSILAGDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNI 112

Query: 146 SKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
           +K EQKKNPQAVLDVL ++ NS K +   KYM+ T
Sbjct: 113 TKSEQKKNPQAVLDVLEFY-NSKKTSNSQKYMSFT 146

The activated kinase acts on a variety of targets. Likely to be the GTPase effector that links the Rho-related GTPases to the JNK MAP kinase pathway. Activated by CDC42 and RAC1. Involved in dissolution of stress fibers and reorganization of focal complexes. Involved in regulation of microtubule biogenesis through phosphorylation of TBCB. DVL1 and PAK1 form a ternary complex with MUSK which is important for MUSK-dependent regulation of AChR clustering during the formation of the neuromuscular junction (NMJ). Activity is inhibited in cells undergoing apoptosis, potentially due to binding of CDC2L1 and CDC2L2. Phosphorylates MYL9/MLC2 (By similarity). Phosphorylates RAF1 at 'Ser-338' and 'Ser-339' resulting in: activation of RAF1, stimulation of RAF1 translocation to mitochondria, phosphorylation of BAD by RAF1, and RAF1 binding to BCL2.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q08E52|PAK1_BOVIN Serine/threonine-protein kinase PAK 1 OS=Bos taurus GN=PAK1 PE=1 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 96/155 (61%), Gaps = 15/155 (9%)

Query: 26  DEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKS 85
           D +DKPPAPP+R TS     G +      H          KPLP  P PEE    K  K 
Sbjct: 7   DIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGS--------KPLP--PNPEE----KKKKD 52

Query: 86  AKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNI 145
             +     G ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI
Sbjct: 53  RFYRAILPGDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNI 112

Query: 146 SKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
           +K EQKKNPQAVLDVL ++ NS K +   KYM+ T
Sbjct: 113 TKSEQKKNPQAVLDVLEFY-NSKKTSNSQKYMSFT 146

The activated kinase acts on a variety of targets. Likely to be the GTPase effector that links the Rho-related GTPases to the JNK MAP kinase pathway. Activated by CDC42 and RAC1. Involved in dissolution of stress fibers and reorganization of focal complexes. Involved in regulation of microtubule biogenesis through phosphorylation of TBCB. DVL1 and PAK1 form a ternary complex with MUSK which is important for MUSK-dependent regulation of AChR clustering during the formation of the neuromuscular junction (NMJ). Activity is inhibited in cells undergoing apoptosis, potentially due to binding of CDC2L1 and CDC2L2 (By similarity). Phosphorylates MYL9/MLC2. Phosphorylates RAF1 at 'Ser-338' and 'Ser-339' resulting in: activation of RAF1, stimulation of RAF1 translocation to mitochondria, phosphorylation of BAD by RAF1, and RAF1 binding to BCL2.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q13153|PAK1_HUMAN Serine/threonine-protein kinase PAK 1 OS=Homo sapiens GN=PAK1 PE=1 SV=2

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 96/155 (61%), Gaps = 15/155 (9%)

Query: 26  DEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKS 85
           D +DKPPAPP+R TS     G +      H          KPLP  P PEE    K  K 
Sbjct: 7   DIQDKPPAPPMRNTSTMIGAGSKDAGTLNHGS--------KPLP--PNPEE----KKKKD 52

Query: 86  AKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNI 145
             +     G ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI
Sbjct: 53  RFYRSILPGDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNI 112

Query: 146 SKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
           +K EQKKNPQAVLDVL ++ NS K +   KYM+ T
Sbjct: 113 TKSEQKKNPQAVLDVLEFY-NSKKTSNSQKYMSFT 146

The activated kinase acts on a variety of targets. Likely to be the GTPase effector that links the Rho-related GTPases to the JNK MAP kinase pathway. Activated by CDC42 and RAC1. Involved in dissolution of stress fibers and reorganization of focal complexes. Involved in regulation of microtubule biogenesis through phosphorylation of TBCB. DVL1 and PAK1 form a ternary complex with MUSK which is important for MUSK-dependent regulation of AChR clustering during the formation of the neuromuscular junction (NMJ). Activity is inhibited in cells undergoing apoptosis, potentially due to binding of CDC2L1 and CDC2L2. Phosphorylates MYL9/MLC2. Phosphorylates RAF1 at 'Ser-338' and 'Ser-339' resulting in: activation of RAF1, stimulation of RAF1 translocation to mitochondria, phosphorylation of BAD by RAF1, and RAF1 binding to BCL2.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O88643|PAK1_MOUSE Serine/threonine-protein kinase PAK 1 OS=Mus musculus GN=Pak1 PE=1 SV=1

 Score =  131 bits (330), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/155 (50%), Positives = 96/155 (61%), Gaps = 15/155 (9%)

Query: 26  DEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKS 85
           D +DKPPAPP+R TS     G +      H          KPLP  P PEE    K  K 
Sbjct: 7   DIQDKPPAPPMRNTSTMIGAGSKDTGTLNHGS--------KPLP--PNPEE----KKKKD 52

Query: 86  AKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNI 145
             +     G ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI
Sbjct: 53  RFYRSILPGDKTNKKREKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNI 112

Query: 146 SKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
           +K EQKKNPQAVLDVL ++ NS K +   KYM+ T
Sbjct: 113 TKSEQKKNPQAVLDVLEFY-NSKKTSNSKKYMSFT 146

The activated kinase acts on a variety of targets. Likely to be the GTPase effector that links the Rho-related GTPases to the JNK MAP kinase pathway. Activated by CDC42 and RAC1. Involved in dissolution of stress fibers and reorganization of focal complexes. Involved in regulation of microtubule biogenesis through phosphorylation of TBCB. DVL1 and PAK1 form a ternary complex with MUSK which is important for MUSK-dependent regulation of AChR clustering during the formation of the neuromuscular junction (NMJ). Activity is inhibited in cells undergoing apoptosis, potentially due to binding of CDC2L1 and CDC2L1 and CDC2L2. Phosphorylates MYL9/MLC2. Phosphorylates RAF1 at 'Ser-338' and 'Ser-339' resulting in: activation of RAF1, stimulation of RAF1 translocation to mitochondria, phosphorylation of BAD by RAF1, and RAF1 binding to BCL2.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q64303|PAK2_RAT Serine/threonine-protein kinase PAK 2 OS=Rattus norvegicus GN=Pak2 PE=1 SV=1

 Score =  129 bits (325), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 100/160 (62%), Gaps = 20/160 (12%)

Query: 24  MSDE---EDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGK 80
           MSD    EDKPPAPPVR++S     G + DP   +H        LKPLP  PE E++   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGK-DPLSANHS-------LKPLPSVPE-EKKPRN 51

Query: 81  KHSKSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
           K       +      +   RPE     IS P++FEHT+HVGFDA TGEFTGMPE WARLL
Sbjct: 52  KIISIFSSTEKGSKKKEKERPE-----ISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLL 106

Query: 141 MSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
            +SNI+KLEQKKNPQAVLDVL ++D++T +    KY++ T
Sbjct: 107 QTSNITKLEQKKNPQAVLDVLKFYDSNTVK---QKYLSFT 143

Serine/threonine protein kinase that plays a role in a variety of different signaling pathways including cytoskeleton regulation, cell motility, cell cycle progression, apoptosis or proliferation. Acts as downstream effector of the small GTPases CDC42 and RAC1. Activation by the binding of active CDC42 and RAC1 results in a conformational change and a subsequent autophosphorylation on several serine and/or threonine residues. Full-length PAK2 stimulates cell survival and cell growth. Phosphorylates MAPK4 and MAPK6 and activates the downstream target MAPKAPK5, a regulator of F-actin polymerization and cell migration. Phosphorylates JUN and plays an important role in EGF-induced cell proliferation. Phosphorylates many other substrates including histone H4 to promote assembly of H3.3 and H4 into nucleosomes, BAD, ribosomal protein S6, or MBP. Additionally, associates with ARHGEF7 and GIT1 to perform kinase-independent functions such as spindle orientation control during mitosis. On the other hand, apoptotic stimuli such as DNA damage lead to caspase-mediated cleavage of PAK2, generating PAK-2p34, an active p34 fragment that translocates to the nucleus and promotes cellular apoptosis involving the JNK signaling pathway. Caspase-activated PAK2 phosphorylates MKNK1 and reduces cellular translation.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q13177|PAK2_HUMAN Serine/threonine-protein kinase PAK 2 OS=Homo sapiens GN=PAK2 PE=1 SV=3

 Score =  129 bits (325), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/160 (50%), Positives = 106/160 (66%), Gaps = 20/160 (12%)

Query: 24  MSDE---EDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGK 80
           MSD    EDKPPAPPVR++S     G + DP   +H        LKPLP  PE ++    
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGK-DPLSANH-------SLKPLPSVPEEKK---P 49

Query: 81  KHSKSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
           +H   +  SG     + +++ E E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL
Sbjct: 50  RHKIISIFSGT---EKGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLL 106

Query: 141 MSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
            +SNI+KLEQKKNPQAVLDVL ++D++T +    KY++ T
Sbjct: 107 QTSNITKLEQKKNPQAVLDVLKFYDSNTVK---QKYLSFT 143

Serine/threonine protein kinase that plays a role in a variety of different signaling pathways including cytoskeleton regulation, cell motility, cell cycle progression, apoptosis or proliferation. Acts as downstream effector of the small GTPases CDC42 and RAC1. Activation by the binding of active CDC42 and RAC1 results in a conformational change and a subsequent autophosphorylation on several serine and/or threonine residues. Full-length PAK2 stimulates cell survival and cell growth. Phosphorylates MAPK4 and MAPK6 and activates the downstream target MAPKAPK5, a regulator of F-actin polymerization and cell migration. Phosphorylates JUN and plays an important role in EGF-induced cell proliferation. Phosphorylates many other substrates including histone H4 to promote assembly of H3.3 and H4 into nucleosomes, BAD, ribosomal protein S6, or MBP. Additionally, associates with ARHGEF7 and GIT1 to perform kinase-independent functions such as spindle orientation control during mitosis. On the other hand, apoptotic stimuli such as DNA damage lead to caspase-mediated cleavage of PAK2, generating PAK-2p34, an active p34 fragment that translocates to the nucleus and promotes cellular apoptosis involving the JNK signaling pathway. Caspase-activated PAK2 phosphorylates MKNK1 and reduces cellular translation.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q29502|PAK2_RABIT Serine/threonine-protein kinase PAK 2 OS=Oryctolagus cuniculus GN=PAK2 PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 100/160 (62%), Gaps = 20/160 (12%)

Query: 24  MSDE---EDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGK 80
           MSD    EDKPPAPPVR++S     G + DP   +H        LKPLP  PE E++   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGK-DPLSANHS-------LKPLPSVPE-EKKPRN 51

Query: 81  KHSKSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
           K       +      +   RPE     IS P++FEHT+HVGFDA TGEFTGMPE WARLL
Sbjct: 52  KIISIFSGTEKGSKKKEKERPE-----ISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLL 106

Query: 141 MSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
            +SNI+KLEQKKNPQAVLDVL ++D++T +    KY++ T
Sbjct: 107 QTSNITKLEQKKNPQAVLDVLKFYDSNTVK---QKYLSFT 143

Serine/threonine protein kinase that plays a role in a variety of different signaling pathways including cytoskeleton regulation, cell motility, cell cycle progression, apoptosis or proliferation. Acts as downstream effector of the small GTPases CDC42 and RAC1. Activation by the binding of active CDC42 and RAC1 results in a conformational change and a subsequent autophosphorylation on several serine and/or threonine residues. Full-length PAK2 stimulates cell survival and cell growth. Phosphorylates MAPK4 and MAPK6 and activates the downstream target MAPKAPK5, a regulator of F-actin polymerization and cell migration. Phosphorylates JUN and plays an important role in EGF-induced cell proliferation. Phosphorylates many other substrates including histone H4 to promote assembly of H3.3 and H4 into nucleosomes, BAD, ribosomal protein S6, or MBP. Additionally, associates with ARHGEF7 and GIT1 to perform kinase-independent functions such as spindle orientation control during mitosis. On the other hand, apoptotic stimuli such as DNA damage lead to caspase-mediated cleavage of PAK2, generating PAK-2p34, an active p34 fragment that translocates to the nucleus and promotes cellular apoptosis involving the JNK signaling pathway. Caspase-activated PAK2 phosphorylates MKNK1 and reduces cellular translation.

Oryctolagus cuniculus (taxid: 9986)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8CIN4|PAK2_MOUSE Serine/threonine-protein kinase PAK 2 OS=Mus musculus GN=Pak2 PE=1 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 100/160 (62%), Gaps = 20/160 (12%)

Query: 24  MSDE---EDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGK 80
           MSD    EDKPPAPPVR++S     G + DP   +H        LKPLP  PE E++   
Sbjct: 1   MSDNGELEDKPPAPPVRMSSTIFSTGGK-DPLSANHS-------LKPLPSVPE-EKKPRN 51

Query: 81  KHSKSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
           K       +      +   RPE     IS P++FEHT+HVGFDA TGEFTGMPE WARLL
Sbjct: 52  KIISIFSGTEKGSKKKEKERPE-----ISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLL 106

Query: 141 MSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
            +SNI+KLEQKKNPQAVLDVL ++D++T +    KY++ T
Sbjct: 107 QTSNITKLEQKKNPQAVLDVLKFYDSNTVK---QKYLSFT 143

Serine/threonine protein kinase that plays a role in a variety of different signaling pathways including cytoskeleton regulation, cell motility, cell cycle progression, apoptosis or proliferation. Acts as downstream effector of the small GTPases CDC42 and RAC1. Activation by the binding of active CDC42 and RAC1 results in a conformational change and a subsequent autophosphorylation on several serine and/or threonine residues. Full-length PAK2 stimulates cell survival and cell growth. Phosphorylates MAPK4 and MAPK6 and activates the downstream target MAPKAPK5, a regulator of F-actin polymerization and cell migration. Phosphorylates JUN and plays an important role in EGF-induced cell proliferation. Phosphorylates many other substrates including histone H4 to promote assembly of H3.3 and H4 into nucleosomes, BAD, ribosomal protein S6, or MBP. Additionally, associates with ARHGEF7 and GIT1 to perform kinase-independent functions such as spindle orientation control during mitosis. On the other hand, apoptotic stimuli such as DNA damage lead to caspase-mediated cleavage of PAK2, generating PAK-2p34, an active p34 fragment that translocates to the nucleus and promotes cellular apoptosis involving the JNK signaling pathway. Caspase-activated PAK2 phosphorylates MKNK1 and reduces cellular translation.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q61036|PAK3_MOUSE Serine/threonine-protein kinase PAK 3 OS=Mus musculus GN=Pak3 PE=1 SV=2

 Score =  128 bits (321), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 98/170 (57%), Gaps = 34/170 (20%)

Query: 26  DEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHSKS 85
           D E+KPPAPP+R+ SNN       D    +H   P P+          PEE+  K   +S
Sbjct: 6   DNEEKPPAPPLRMNSNNR------DSSALNHSSKPLPM---------APEEKNKKARLRS 50

Query: 86  AKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFT--------------- 130
               G   G ++ ++ E E+P IS P++FEHT+HVGFDA TGEFT               
Sbjct: 51  IFPGG---GDKTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTPDLYGSQMCPGKLPE 107

Query: 131 GMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
           G+PE WARLL +SNI+KLEQKKNPQAVLDVL ++D S +     KYM+ T
Sbjct: 108 GIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYD-SKETVNNQKYMSFT 156

Serine/threonine protein kinase that plays a role in a variety of different signaling pathways including cytoskeleton regulation, cell migration, or cell cycle regulation. Plays a role in dendrite spine morphogenesis as well as synapse formation and plasticity. Acts as downstream effector of the small GTPases CDC42 and RAC1. Activation by the binding of active CDC42 and RAC1 results in a conformational change and a subsequent autophosphorylation on several serine and/or threonine residues. Phosphorylates MAPK4 and MAPK6 and activates the downstream target MAPKAPK5, a regulator of F-actin polymerization and cell migration. Additionally, phosphorylates TNNI3/troponin I to modulate calcium sensitivity and relaxation kinetics of thin myofilaments.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
307208513	598	Serine/threonine-protein kinase PAK 1 [H	0.748	0.229	0.643	5e-47
307174648	582	Serine/threonine-protein kinase PAK 2 [C	0.748	0.235	0.643	7e-47
332020935	582	Serine/threonine-protein kinase PAK 1 [A	0.748	0.235	0.643	8e-47
322796434	582	hypothetical protein SINV_10373 [Solenop	0.748	0.235	0.643	9e-47
383858197	582	PREDICTED: serine/threonine-protein kina	0.748	0.235	0.637	2e-46
328789848	582	PREDICTED: serine/threonine-protein kina	0.748	0.235	0.637	3e-46
350408833	585	PREDICTED: serine/threonine-protein kina	0.748	0.234	0.637	3e-46
383858199	586	PREDICTED: serine/threonine-protein kina	0.748	0.233	0.621	1e-44
380017567	586	PREDICTED: LOW QUALITY PROTEIN: serine/t	0.748	0.233	0.621	2e-44
350408836	589	PREDICTED: serine/threonine-protein kina	0.748	0.232	0.621	2e-44

>gi|307208513|gb|EFN85864.1| Serine/threonine-protein kinase PAK 1 [Harpegnathos saltator]

 Score =  192 bits (488), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 115/160 (71%), Gaps = 23/160 (14%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESAPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSS 143
                           +   +KP IS PTNFEHTVHVGFDA TGEFTGMPEAWARLLMSS
Sbjct: 49  GK-----------MKVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMSS 97

Query: 144 NISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           NISK EQKKNPQAVLDVLNW+D+S+KEAKGSKYMTTT+M+
Sbjct: 98  NISKQEQKKNPQAVLDVLNWYDSSSKEAKGSKYMTTTKMV 137

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174648|gb|EFN65047.1| Serine/threonine-protein kinase PAK 2 [Camponotus floridanus]

 Score =  192 bits (487), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 115/160 (71%), Gaps = 23/160 (14%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESAPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSS 143
                           +   +KP IS PTNFEHTVHVGFDA TGEFTGMPEAWARLLMSS
Sbjct: 49  GK-----------IKVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMSS 97

Query: 144 NISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           NISK EQKKNPQAVLDVLNW+D+S+KEAKGSKYMTTT+M+
Sbjct: 98  NISKQEQKKNPQAVLDVLNWYDSSSKEAKGSKYMTTTKMV 137

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020935|gb|EGI61329.1| Serine/threonine-protein kinase PAK 1 [Acromyrmex echinatior]

 Score =  191 bits (486), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 115/160 (71%), Gaps = 23/160 (14%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESAPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSS 143
                           +   +KP IS PTNFEHTVHVGFDA TGEFTGMPEAWARLLMSS
Sbjct: 49  SK-----------MKVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMSS 97

Query: 144 NISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           NISK EQKKNPQAVLDVLNW+D+S+KEAKGSKYMTTT+M+
Sbjct: 98  NISKQEQKKNPQAVLDVLNWYDSSSKEAKGSKYMTTTKMV 137

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796434|gb|EFZ18964.1| hypothetical protein SINV_10373 [Solenopsis invicta]

 Score =  191 bits (486), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 103/160 (64%), Positives = 115/160 (71%), Gaps = 23/160 (14%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESTPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSS 143
                           +   +KP IS PTNFEHTVHVGFDA TGEFTGMPEAWARLLMSS
Sbjct: 49  SK-----------MKVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMSS 97

Query: 144 NISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           NISK EQKKNPQAVLDVLNW+D+S+KEAKGSKYMTTT+M+
Sbjct: 98  NISKQEQKKNPQAVLDVLNWYDSSSKEAKGSKYMTTTKMV 137

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858197|ref|XP_003704588.1| PREDICTED: serine/threonine-protein kinase PAK 1 isoform 1 [Megachile rotundata]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 114/160 (71%), Gaps = 23/160 (14%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESAPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSS 143
                           +   +KP IS PTNFEHTVHVGFDA TGEFTGMPEAWARLLMSS
Sbjct: 49  SK-----------MKVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMSS 97

Query: 144 NISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           NISK EQKKNPQAVLDVLNW+D+S+KE KGSKYMTTT+M+
Sbjct: 98  NISKQEQKKNPQAVLDVLNWYDSSSKETKGSKYMTTTKMV 137

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789848|ref|XP_001119958.2| PREDICTED: serine/threonine-protein kinase PAK 1 isoform 1 [Apis mellifera]

 Score =  190 bits (482), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 114/160 (71%), Gaps = 23/160 (14%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESTPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSS 143
                           +   +KP IS PTNFEHTVHVGFDA TGEFTGMPEAWARLLMSS
Sbjct: 49  SK-----------MKVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMSS 97

Query: 144 NISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           NISK EQKKNPQAVLDVLNW+D+S+KE KGSKYMTTT+M+
Sbjct: 98  NISKQEQKKNPQAVLDVLNWYDSSSKETKGSKYMTTTKMV 137

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408833|ref|XP_003488530.1| PREDICTED: serine/threonine-protein kinase PAK 1-like isoform 1 [Bombus impatiens]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/160 (63%), Positives = 114/160 (71%), Gaps = 23/160 (14%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESTPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSS 143
                           +   +KP IS PTNFEHTVHVGFDA TGEFTGMPEAWARLLMSS
Sbjct: 49  SKM-----------KVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMSS 97

Query: 144 NISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           NISK EQKKNPQAVLDVLNW+D+S+KE KGSKYMTTT+M+
Sbjct: 98  NISKQEQKKNPQAVLDVLNWYDSSSKETKGSKYMTTTKMV 137

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858199|ref|XP_003704589.1| PREDICTED: serine/threonine-protein kinase PAK 1 isoform 2 [Megachile rotundata]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 114/164 (69%), Gaps = 27/164 (16%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESAPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFT----GMPEAWARL 139
                           +   +KP IS PTNFEHTVHVGFDA TGEFT    GMPEAWARL
Sbjct: 49  SK-----------MKVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTLPLKGMPEAWARL 97

Query: 140 LMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           LMSSNISK EQKKNPQAVLDVLNW+D+S+KE KGSKYMTTT+M+
Sbjct: 98  LMSSNISKQEQKKNPQAVLDVLNWYDSSSKETKGSKYMTTTKMV 141

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017567|ref|XP_003692724.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase PAK 1-like [Apis florea]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 114/164 (69%), Gaps = 27/164 (16%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESTPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFT----GMPEAWARL 139
                           +   +KP IS PTNFEHTVHVGFDA TGEFT    GMPEAWARL
Sbjct: 49  SK-----------MKVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTLPLKGMPEAWARL 97

Query: 140 LMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           LMSSNISK EQKKNPQAVLDVLNW+D+S+KE KGSKYMTTT+M+
Sbjct: 98  LMSSNISKQEQKKNPQAVLDVLNWYDSSSKETKGSKYMTTTKMV 141

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408836|ref|XP_003488531.1| PREDICTED: serine/threonine-protein kinase PAK 1-like isoform 2 [Bombus impatiens]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 102/164 (62%), Positives = 114/164 (69%), Gaps = 27/164 (16%)

Query: 24  MSDEEDKPPAPPVRLTSNNSFRGVRGDPPPPHHHYAPSPVDLKPLPKEPEPEERTGKKHS 83
           MSDEEDKPPAPPVRLTSN      RG+  P        PVD++PLPKEP+ +ER  K   
Sbjct: 1   MSDEEDKPPAPPVRLTSN------RGESTPNL------PVDMRPLPKEPDSDERKKKTLK 48

Query: 84  KSAKHSGAPKGSRSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFT----GMPEAWARL 139
                           +   +KP IS PTNFEHTVHVGFDA TGEFT    GMPEAWARL
Sbjct: 49  SKM-----------KVKENKDKPNISYPTNFEHTVHVGFDAVTGEFTLPLKGMPEAWARL 97

Query: 140 LMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTRMM 183
           LMSSNISK EQKKNPQAVLDVLNW+D+S+KE KGSKYMTTT+M+
Sbjct: 98  LMSSNISKQEQKKNPQAVLDVLNWYDSSSKETKGSKYMTTTKMV 141

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	183
FB|FBgn0014001	815	Pak "PAK-kinase" [Drosophila m	0.404	0.090	0.851	1.1e-35
UNIPROTKB|B1AKS5	181	PAK3 "Serine/threonine-protein	0.267	0.270	0.64	1.8e-30
UNIPROTKB|F1SQW0	438	PAK2 "Uncharacterized protein"	0.448	0.187	0.623	1.1e-29
UNIPROTKB|E2RA66	544	PAK3 "Uncharacterized protein"	0.459	0.154	0.623	1.8e-29
RGD|3251	544	Pak3 "p21 protein (Cdc42/Rac)-	0.459	0.154	0.623	1.8e-29
UNIPROTKB|Q62829	544	Pak3 "Serine/threonine-protein	0.459	0.154	0.623	1.8e-29
UNIPROTKB|E2REG4	547	PAK3 "Uncharacterized protein"	0.459	0.153	0.623	1.9e-29
UNIPROTKB|E1C3P6	544	PAK1 "Uncharacterized protein"	0.459	0.154	0.647	4e-29
UNIPROTKB|E2RJA0	524	PAK2 "Uncharacterized protein"	0.469	0.164	0.604	5.6e-29
UNIPROTKB|F1N8W8	537	PAK3 "Uncharacterized protein"	0.459	0.156	0.623	7e-29

FB|FBgn0014001 Pak "PAK-kinase" [Drosophila melanogaster (taxid:7227)]

 Score = 331 (121.6 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
 Identities = 63/74 (85%), Positives = 66/74 (89%)

Query:   105 KPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWF 164
             KP IS PTNFEHTVHVGFDA TGEFTGMPEAWARLLM+SNISK EQKKNPQAVLDVL WF
Sbjct:    80 KPNISYPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMNSNISKQEQKKNPQAVLDVLKWF 139

Query:   165 DNSTKEAKGSKYMT 178
             DN+TK+   SKYMT
Sbjct:   140 DNTTKQRPSSKYMT 153

GO:0005925 "focal adhesion" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS;IDA;NAS

GO:0007155 "cell adhesion" evidence=IDA

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS;IPI

GO:0007254 "JNK cascade" evidence=NAS

GO:0007391 "dorsal closure" evidence=IMP;TAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=NAS

GO:0016601 "Rac protein signal transduction" evidence=NAS

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IMP

GO:0050803 "regulation of synapse structure and activity" evidence=IMP

GO:0050770 "regulation of axonogenesis" evidence=IGI

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0019991 "septate junction assembly" evidence=IMP

UNIPROTKB|B1AKS5 PAK3 "Serine/threonine-protein kinase PAK 3" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
 Identities = 32/50 (64%), Positives = 39/50 (78%)

Query:   131 GMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTT 180
             G+PE WARLL +SNI+KLEQKKNPQAVLDVL ++D S +     KYM+ T
Sbjct:   129 GIPEQWARLLQTSNITKLEQKKNPQAVLDVLKFYD-SKETVNNQKYMSFT 177

GO:0004672 "protein kinase activity" evidence=IEA

GO:0007409 "axonogenesis" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

UNIPROTKB|F1SQW0 PAK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 282 (104.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
 Identities = 53/85 (62%), Positives = 70/85 (82%)

Query:    96 RSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQ 155
             + +++ E E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI+KLEQKKNPQ
Sbjct:    62 KGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQ 121

Query:   156 AVLDVLNWFDNSTKEAKGSKYMTTT 180
             AVLDVL ++D++T +    KY++ T
Sbjct:   122 AVLDVLKFYDSNTVK---QKYLSFT 143

GO:2001271 "negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis" evidence=IEA

GO:2001238 "positive regulation of extrinsic apoptotic signaling pathway" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0030296 "protein tyrosine kinase activator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RA66 PAK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 281 (104.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 53/85 (62%), Positives = 68/85 (80%)

Query:    96 RSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQ 155
             ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTG+PE WARLL +SNI+KLEQKKNPQ
Sbjct:    58 KTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKNPQ 117

Query:   156 AVLDVLNWFDNSTKEAKGSKYMTTT 180
             AVLDVL ++D S +     KYM+ T
Sbjct:   118 AVLDVLKFYD-SKETVNNQKYMSFT 141

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

RGD|3251 Pak3 "p21 protein (Cdc42/Rac)-activated kinase 3" [Rattus norvegicus (taxid:10116)]

 Score = 281 (104.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 53/85 (62%), Positives = 68/85 (80%)

Query:    96 RSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQ 155
             ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTG+PE WARLL +SNI+KLEQKKNPQ
Sbjct:    58 KTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKNPQ 117

Query:   156 AVLDVLNWFDNSTKEAKGSKYMTTT 180
             AVLDVL ++D S +     KYM+ T
Sbjct:   118 AVLDVLKFYD-SKETVNNQKYMSFT 141

GO:0000165 "MAPK cascade" evidence=ISO

GO:0000187 "activation of MAPK activity" evidence=ISO

GO:0004672 "protein kinase activity" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004708 "MAP kinase kinase activity" evidence=IEA;ISO;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=TAS

GO:0007409 "axonogenesis" evidence=IEA;ISO;ISS

GO:0016358 "dendrite development" evidence=IEA;ISO;ISS

GO:0017048 "Rho GTPase binding" evidence=IEA;ISO

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA;ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0051020 "GTPase binding" evidence=IDA

UNIPROTKB|Q62829 Pak3 "Serine/threonine-protein kinase PAK 3" [Rattus norvegicus (taxid:10116)]

 Score = 281 (104.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
 Identities = 53/85 (62%), Positives = 68/85 (80%)

Query:    96 RSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQ 155
             ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTG+PE WARLL +SNI+KLEQKKNPQ
Sbjct:    58 KTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKNPQ 117

Query:   156 AVLDVLNWFDNSTKEAKGSKYMTTT 180
             AVLDVL ++D S +     KYM+ T
Sbjct:   118 AVLDVLKFYD-SKETVNNQKYMSFT 141

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

UNIPROTKB|E2REG4 PAK3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 281 (104.0 bits), Expect = 1.9e-29, Sum P(2) = 1.9e-29
 Identities = 53/85 (62%), Positives = 68/85 (80%)

Query:    96 RSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQ 155
             ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTG+PE WARLL +SNI+KLEQKKNPQ
Sbjct:    58 KTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKNPQ 117

Query:   156 AVLDVLNWFDNSTKEAKGSKYMTTT 180
             AVLDVL ++D S +     KYM+ T
Sbjct:   118 AVLDVLKFYD-SKETVNNQKYMSFT 141

GO:0060244 "negative regulation of cell proliferation involved in contact inhibition" evidence=IEA

GO:0051496 "positive regulation of stress fiber assembly" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0043507 "positive regulation of JUN kinase activity" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0033148 "positive regulation of intracellular estrogen receptor signaling pathway" evidence=IEA

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|E1C3P6 PAK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 290 (107.1 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
 Identities = 55/85 (64%), Positives = 69/85 (81%)

Query:    96 RSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQ 155
             ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI+KLEQKKNPQ
Sbjct:    63 KTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQ 122

Query:   156 AVLDVLNWFDNSTKEAKGSKYMTTT 180
             AVLDVL ++ NS K +   KYM+ T
Sbjct:   123 AVLDVLEFY-NSKKTSSSQKYMSFT 146

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001726 "ruffle" evidence=IEA

GO:0005518 "collagen binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0031532 "actin cytoskeleton reorganization" evidence=IEA

GO:0033138 "positive regulation of peptidyl-serine phosphorylation" evidence=IEA

GO:0033148 "positive regulation of intracellular estrogen receptor signaling pathway" evidence=IEA

GO:0042060 "wound healing" evidence=IEA

GO:0043113 "receptor clustering" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0043507 "positive regulation of JUN kinase activity" evidence=IEA

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=IEA

GO:0051496 "positive regulation of stress fiber assembly" evidence=IEA

GO:0060244 "negative regulation of cell proliferation involved in contact inhibition" evidence=IEA

UNIPROTKB|E2RJA0 PAK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 283 (104.7 bits), Expect = 5.6e-29, Sum P(2) = 5.6e-29
 Identities = 52/86 (60%), Positives = 69/86 (80%)

Query:    96 RSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQ 155
             + +++ E E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI+KLEQKKNPQ
Sbjct:    62 KGSKKKEKERPEISPPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKLEQKKNPQ 121

Query:   156 AVLDVLNWFDNSTKEAKGSKYMTTTR 181
             AVLDVL ++D++T + K   +  T +
Sbjct:   122 AVLDVLKFYDSNTVKQKYLSFTPTEK 147

GO:2001271 "negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis" evidence=IEA

GO:2001238 "positive regulation of extrinsic apoptotic signaling pathway" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0030296 "protein tyrosine kinase activator activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0018105 "peptidyl-serine phosphorylation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1N8W8 PAK3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 7.0e-29, Sum P(2) = 7.0e-29
 Identities = 53/85 (62%), Positives = 68/85 (80%)

Query:    96 RSTRRPEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQ 155
             ++ ++ E E+P IS P++FEHT+HVGFDA TGEFTG+PE WARLL +SNI+KLEQKKNPQ
Sbjct:    52 KTNKKKEKERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNITKLEQKKNPQ 111

Query:   156 AVLDVLNWFDNSTKEAKGSKYMTTT 180
             AVLDVL ++D S +     KYM+ T
Sbjct:   112 AVLDVLKFYD-SKETVNNQKYMSFT 135

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004708 "MAP kinase kinase activity" evidence=IEA

GO:0007409 "axonogenesis" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0017048 "Rho GTPase binding" evidence=IEA

GO:0030833 "regulation of actin filament polymerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q08E52	PAK1_BOVIN	2, ., 7, ., 1, 1, ., 1	0.5032	0.7650	0.2573	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	183
pfam00786	59	pfam00786, PBD, P21-Rho-binding domain	1e-22
cd01093	46	cd01093, CRIB_PAK_like, PAK (p21 activated kinase)	1e-22
smart00285	36	smart00285, PBD, P21-Rho-binding domain	1e-12
cd00132	42	cd00132, CRIB, PAK (p21 activated kinase) Binding	2e-06

>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain

 Score = 85.2 bits (211), Expect = 1e-22
 Identities = 40/55 (72%), Positives = 43/55 (78%)

Query: 107 VISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVL 161
            IS PTNF+H VHVGFD  TG FTG+P  W +LL SS ISK EQKKNPQAVLDVL
Sbjct: 1   EISTPTNFKHVVHVGFDGQTGFFTGLPPEWEKLLPSSGISKPEQKKNPQAVLDVL 55

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 59

>gnl|CDD|238526 cd01093, CRIB_PAK_like, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

 Score = 84.6 bits (210), Expect = 1e-22
 Identities = 33/46 (71%), Positives = 37/46 (80%)

Query: 106 PVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQK 151
           P IS+PTNF+H VHVGFD  TGEFTG+PE W RLL SS I+K EQK
Sbjct: 1   PEISSPTNFKHRVHVGFDPQTGEFTGLPEEWQRLLKSSGITKEEQK 46

This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins. Length = 46

>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain

 Score = 58.8 bits (143), Expect = 1e-12
 Identities = 21/33 (63%), Positives = 23/33 (69%)

Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
           IS PTNF+H  HVGFD  TG FTG+P  W  LL
Sbjct: 1   ISTPTNFKHIAHVGFDGQTGGFTGLPTEWKSLL 33

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). Length = 36

>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

 Score = 42.4 bits (100), Expect = 2e-06
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISK 147
           IS PT+F+H  HVG+D    +   +P     L  ++ IS 
Sbjct: 3   ISTPTDFKHISHVGWDGVGFDGANLPPDLQSLFQTAGISA 42

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	183
PF00786	59	PBD: P21-Rho-binding domain; InterPro: IPR000095 T	99.87
KOG0578|consensus	550		99.83
cd01093	46	CRIB_PAK_like PAK (p21 activated kinase) Binding D	99.8
smart00285	36	PBD P21-Rho-binding domain. Small domains that bin	99.62
cd00132	42	CRIB PAK (p21 activated kinase) Binding Domain (PB	99.56
KOG3671|consensus	569		98.12
PF08671	30	SinI: Anti-repressor SinI; InterPro: IPR010981 The	93.37

>PF00786 PBD: P21-Rho-binding domain; InterPro: IPR000095 The molecular bases of the versatile functions of Rho-like GTPases are still unknown

Probab=99.87  E-value=4.7e-23  Score=142.81  Aligned_cols=59  Identities=58%  Similarity=1.001  Sum_probs=52.4

Q ss_pred             ccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHHHcCCCHHHHhhChHHHHHHHHhhc
Q psy13110        107 VISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFD  165 (183)
Q Consensus       107 ~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~~sGISk~E~k~NpqaVldVl~Fy~  165 (183)
                      +||.|+||+|++|||||+++|.|.|||++|+.+|..+|||++|+++||+++++|++||+
T Consensus         1 ~Is~P~nf~H~~HVg~d~~~g~~~glp~ew~~~l~~~~it~~~~~~~~~~~~~v~~f~~   59 (59)
T PF00786_consen    1 DISNPTNFKHVAHVGWDPNTGGFTGLPPEWEKLLKSSGITEEEIKDNPQAVFDVLQFYQ   59 (59)
T ss_dssp             TB---EEEEEEEEEEEETTTTEEES--HHHHHHHHSCTTSHHHHCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcceeeeccCCCccccccCCHHHHhhccccCCCHHHhhcCCcceeeeeeecC
Confidence            59999999999999999999999999999999999999999999999999999999984

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB). The Cdc42/Rac interactive binding (CRIB) region has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway []. In fission yeast pak1+ encodes a protein kinase that interacts with Cdc42p and is involved in the control of cell polarity and mating [].; GO: 0005515 protein binding; PDB: 2OV2_O 1EES_B 2ODB_B 1E0A_B 2QME_I 1F3M_B 3PCS_H 1T84_A 2K42_A 1EJ5_A ....

>KOG0578|consensus

Probab=99.83  E-value=2.3e-21  Score=182.24  Aligned_cols=78  Identities=50%  Similarity=0.814  Sum_probs=70.0

Q ss_pred             CCCCCCccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHHHcCCCHHHHhhChHHHHHHHHhhcccccccCCCccccc
Q psy13110        101 PEAEKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTT  179 (183)
Q Consensus       101 ~~~~k~~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~~sGISk~E~k~NpqaVldVl~Fy~~~~~~~~~~K~m~~  179 (183)
                      +...+++||.|+||+|.+|||||++||+|+|||++|++||+.++|++.|+..||+||+++|+||.........++ |.+
T Consensus        21 ~~~~~s~iS~P~nf~h~vHvGfd~~tg~ftGlP~~W~~Ll~~s~it~~e~~~~~~avi~~~~~y~~~t~~~~~~~-l~~   98 (550)
T KOG0578|consen   21 KKSGKSEISSPSNFEHRVHVGFDPVTGEFTGLPKQWQRLLQSSEITKREQPLNPPAVITALQFYESKTLSRGISK-LRS   98 (550)
T ss_pred             cccCCCccCCCCCccceeecccCCCcccccCCcHHHHHHhcchhhcccccccCChhheehhhhccccccccCccc-cCc
Confidence            335678999999999999999999999999999999999999999999999999999999999998876555566 443

>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=99.80  E-value=4.5e-20  Score=122.83  Aligned_cols=46  Identities=72%  Similarity=1.170  Sum_probs=43.7

Q ss_pred             CccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHHHcCCCHHHHh
Q psy13110        106 PVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQK  151 (183)
Q Consensus       106 ~~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~~sGISk~E~k  151 (183)
                      +.||.|+||+|++|||||+++|+|+|||++|+++|+++|||++|++
T Consensus         1 ~~IS~P~n~~H~~Hv~~d~~~g~f~glP~eW~~ll~~sgis~~e~~   46 (46)
T cd01093           1 PEISSPTNFKHRVHVGFDPQTGEFTGLPEEWQRLLKSSGITKEEQK   46 (46)
T ss_pred             CccCCCCCceeeeEeeECCCCCcccCCCHHHHHHHHHcCCCHHHcC
Confidence            3699999999999999999999999999999999999999999974

This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.

>smart00285 PBD P21-Rho-binding domain

Probab=99.62  E-value=2.3e-16  Score=100.37  Aligned_cols=35  Identities=60%  Similarity=1.173  Sum_probs=33.2

Q ss_pred             cCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHHH
Q psy13110        108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMS  142 (183)
Q Consensus       108 IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~~  142 (183)
                      ||.|+||+|++|||||+++|+|+|||++|+++|+.
T Consensus         1 IS~P~nf~H~~HVg~d~~~~~f~glp~ew~~~l~~   35 (36)
T smart00285        1 ISTPTDFKHIAHVGFDGQTGEFTGLPTEWESLLKT   35 (36)
T ss_pred             CCCCCCCcEEEEeeECCCCCccCCCCHHHHHHhcc
Confidence            89999999999999999888999999999999964

Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).

>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway

Probab=99.56  E-value=1.6e-15  Score=99.23  Aligned_cols=40  Identities=38%  Similarity=0.603  Sum_probs=37.6

Q ss_pred             ccCCCCCCeeeeeeeeeCCCcccc-cCcHHHHHHHHHcCCCH
Q psy13110        107 VISNPTNFEHTVHVGFDAHTGEFT-GMPEAWARLLMSSNISK  147 (183)
Q Consensus       107 ~IS~PtNF~H~~HVg~D~~TGeft-GLP~eW~~lL~~sGISk  147 (183)
                      +||.|+||+|++|||||+. |.+. |||++|+++|+.+|||.
T Consensus         2 ~IS~Ptnf~H~~HvG~d~~-g~~~~~~p~~w~~l~~~~~is~   42 (42)
T cd00132           2 EISTPTDFKHISHVGWDGV-GFDGANLPPDLQSLFQTAGISA   42 (42)
T ss_pred             cccCCCCcCcccccCCCCC-CccccCCCHHHHHHHHHccCCC
Confidence            6999999999999999999 9777 99999999999999983

CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.

>KOG3671|consensus

Probab=98.12  E-value=6.7e-07  Score=84.83  Aligned_cols=62  Identities=29%  Similarity=0.457  Sum_probs=52.1

Q ss_pred             CCCCCCccCCCCCCeeeeeeeeeCCCc-cc----ccCcHHHHHHHHHcCCCHHHHhh--ChHHHHHHHH
Q psy13110        101 PEAEKPVISNPTNFEHTVHVGFDAHTG-EF----TGMPEAWARLLMSSNISKLEQKK--NPQAVLDVLN  162 (183)
Q Consensus       101 ~~~~k~~IS~PtNF~H~~HVg~D~~TG-ef----tGLP~eW~~lL~~sGISk~E~k~--NpqaVldVl~  162 (183)
                      +..++.+||+|+||.|+.|||||+++| ..    ..+++....+|..+||++.++.+  ...+|+|+|+
T Consensus       229 sk~tk~disaPtnf~h~~hVgwd~~~gf~~~~~p~~~dp~~nn~~s~agise~~l~~~~t~~fi~~fi~  297 (569)
T KOG3671|consen  229 SKITKADISAPTNFPHIPHVGWDEQVGFDSAPAPNNNDPPLNNLFSSAGISEAQLTERDTMKFIYDFIQ  297 (569)
T ss_pred             cccccccCCCCCCCccccccCCCcCCCcccCCCCCCCChhhhcccccCCCCcccccchhhccccccchh
Confidence            446889999999999999999999999 44    35889999999999999999875  5566666653

>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []

Probab=93.37  E-value=0.083  Score=32.79  Aligned_cols=21  Identities=33%  Similarity=0.629  Sum_probs=14.8

Q ss_pred             CcHHHHHHHH---HcCCCHHHHhh
Q psy13110        132 MPEAWARLLM---SSNISKLEQKK  152 (183)
Q Consensus       132 LP~eW~~lL~---~sGISk~E~k~  152 (183)
                      |++||..|++   .+|||++|+++
T Consensus         1 LD~EW~~Li~eA~~~Gls~eeir~   24 (30)
T PF08671_consen    1 LDEEWVELIKEAKESGLSKEEIRE   24 (30)
T ss_dssp             --HHHHHHHHHHHHTT--HHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCHHHHHH
Confidence            6899999998   68999999874

SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	183
1f3m_A	80	Crystal Structure Of Human SerineTHREONINE KINASE P		2e-25
1e0a_B	46	Cdc42 Complexed With The Gtpase Binding Domain Of P		9e-15
1ees_B	46	Solution Structure Of Cdc42hs Complexed With A Pept		7e-13
2qme_I	36	Crystal Structure Of Human Rac3 In Complex With Cri		1e-10
4fie_A	423	Full-Length Human Pak4 Length = 423		5e-07
2ov2_I	35	The Crystal Structure Of The Human Rac3 In Complex		4e-06
2odb_B	35	The Crystal Structure Of Human Cdc42 In Complex Wit		4e-04

>pdb|1F3M|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 80

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 1/77 (1%)
Query: 104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNW 163
           E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI+K EQKKNPQAVLDVL +
Sbjct: 2   ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEF 61
Query: 164 FDNSTKEAKGSKYMTTT 180
           + NS K +   KYM+ T
Sbjct: 62  Y-NSKKTSNSQKYMSFT 77

>pdb|1E0A|B Chain B, Cdc42 Complexed With The Gtpase Binding Domain Of P21 Activated Kinase Length = 46

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQK 151
           IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI+K EQK
Sbjct: 3   ISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQK 46

>pdb|1EES|B Chain B, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 46

Iteration: 1
 Score = 70.1 bits (170), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNIS 146
           E+P IS P++FEHT+HVGFDA TGEFTG+PE WARLL +SNI+
Sbjct: 4   ERPEISLPSDFEHTIHVGFDAVTGEFTGIPEQWARLLQTSNIT 46

>pdb|2QME|I Chain I, Crystal Structure Of Human Rac3 In Complex With Crib Domain Of Human P21-Activated Kinase 1 (Pak1) Length = 36

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/35 (77%), Positives = 31/35 (88%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMS 142
           IS P++FEHT+HVGFDA TGEFTGMPE WARLL +
Sbjct: 2   ISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 36

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSS 143
           IS P+NFEH VH GFD H  +FTG+P  W  L+  S
Sbjct: 8   ISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIEES 43

>pdb|2OV2|I Chain I, The Crystal Structure Of The Human Rac3 In Complex With The Crib Domain Of Human P21-Activated Kinase 4 (Pak4) Length = 35

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
           IS P+NFEH VH GFD H  +FTG+P  W  L+
Sbjct: 2   ISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI 34

>pdb|2ODB|B Chain B, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 35

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
           IS P NF+H VH  FD   G+F G+P  W  +L
Sbjct: 2   ISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNIL 34

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	183
1f3m_A	80	Serine/threonine-protein kinase PAK-alpha; kinase	5e-29
2odb_B	35	Serine/threonine-protein kinase PAK 6; small GTPas	5e-16
2qme_I	36	CRIB domain of the serine/threonine-protein kinas;	5e-16
2ov2_I	35	Serine/threonine-protein kinase PAK 4; GTPase RAC3	7e-16
1cee_B	59	Wiskott-aldrich syndrome protein WAsp; CDC42 actin	5e-15
1ej5_A	107	WAsp, wiskott-aldrich syndrome protein; alpha heli	1e-06

>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B Length = 80

 Score =  101 bits (253), Expect = 5e-29
 Identities = 54/77 (70%), Positives = 62/77 (80%), Gaps = 1/77 (1%)

Query: 104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNW 163
           E+P IS P++FEHT+HVGFDA TGEFTGMPE WARLL +SNI+K EQKKNPQAVLDVL  
Sbjct: 2   ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLE- 60

Query: 164 FDNSTKEAKGSKYMTTT 180
           F NS K +   KYM+ T
Sbjct: 61  FYNSKKTSNSQKYMSFT 77

>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} Length = 35

 Score = 67.0 bits (164), Expect = 5e-16
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
           IS P NF+H VH  FD   G+F G+P  W  +L
Sbjct: 2   ISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNIL 34

>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens} Length = 36

 Score = 67.0 bits (164), Expect = 5e-16
 Identities = 27/35 (77%), Positives = 31/35 (88%)

Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMS 142
           IS P++FEHT+HVGFDA TGEFTGMPE WARLL +
Sbjct: 2   ISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQT 36

>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens} Length = 35

 Score = 66.7 bits (163), Expect = 7e-16
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 108 ISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL 140
           IS P+NFEH VH GFD H  +FTG+P  W  L+
Sbjct: 2   ISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI 34

>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens} Length = 59

 Score = 65.2 bits (159), Expect = 5e-15
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 100 RPEAEKPVISNPTNFEHTVHVGFDAHTG-EFTGMPEAWARLLMSSNISKLEQKKN 153
           + +  K  I  P+ F+H  HVG+D   G +   +      L   + IS+ +    
Sbjct: 1   KKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDA 55

>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A Length = 107

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 112 TNFEHTVHVGFDAHTG-EFTGMPEAWARLLMSSNISK--LEQKKNPQAVLDVLN 162
           + F+H  HVG+D   G +   +      L   + IS+  L   +  + + D + 
Sbjct: 1   SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIE 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	183
1f3m_A	80	Serine/threonine-protein kinase PAK-alpha; kinase	99.96
2lnh_A	65	N-WAsp, neural wiskott-aldrich syndrome protein; p	99.83
1cee_B	59	Wiskott-aldrich syndrome protein WAsp; CDC42 actin	99.82
1ej5_A	107	WAsp, wiskott-aldrich syndrome protein; alpha heli	99.74
2odb_B	35	Serine/threonine-protein kinase PAK 6; small GTPas	99.69
2qme_I	36	CRIB domain of the serine/threonine-protein kinas;	99.67
2ov2_I	35	Serine/threonine-protein kinase PAK 4; GTPase RAC3	99.66
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.63

>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B

Probab=99.96  E-value=2e-29  Score=184.33  Aligned_cols=77  Identities=65%  Similarity=1.056  Sum_probs=65.5

Q ss_pred             CCCccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHHHcCCCHHHHhhChHHHHHHHHhhcccccccCCCccccccc
Q psy13110        104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKEAKGSKYMTTTR  181 (183)
Q Consensus       104 ~k~~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~~sGISk~E~k~NpqaVldVl~Fy~~~~~~~~~~K~m~~~~  181 (183)
                      ++++||.|+||+|++|||||+.||+|+|||++|++||.++|||++|+++||++|+|||+||+.... ...+|||++++
T Consensus         2 ~~~~Is~Ptnf~H~~HVg~D~~tG~~~GlP~eW~~ll~~sGIs~~e~~~np~~v~dvl~f~~~~~~-~~~~k~~~~~~   78 (80)
T 1f3m_A            2 ERPEISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQTSNITKSEQKKNPQAVLDVLEFYNSKKT-SNSQKYMSFTD   78 (80)
T ss_dssp             -------CCSSEEEEEEEEETTTTEEESCCHHHHHHHHTSCCCHHHHHHCHHHHHHHHHHHHHHHT-CCCCCCCEECC
T ss_pred             CCCccCCCCCCCCeeecccCCCCCccCCCCHHHHHHHHHcCCCHHHHHHCHHHHHHHHHHhccccc-cCccccccCCC
Confidence            458899999999999999999999999999999999999999999999999999999999987664 34689999875

>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}

Probab=99.83  E-value=1e-21  Score=138.88  Aligned_cols=55  Identities=24%  Similarity=0.495  Sum_probs=51.4

Q ss_pred             CCCeeeeeeeeeCCCc-ccccCcHHHHHHHHHcCCCHHHHhhChHHHHHHHHhhccc
Q psy13110        112 TNFEHTVHVGFDAHTG-EFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNS  167 (183)
Q Consensus       112 tNF~H~~HVg~D~~TG-eftGLP~eW~~lL~~sGISk~E~k~NpqaVldVl~Fy~~~  167 (183)
                      |||+|++|||||++|| +|+|||++|++||++||||++|++ ||+++.+|++||++.
T Consensus         2 tnF~Hv~HVG~D~~tGf~~~glp~eW~~ll~~sGIs~~~~k-~~et~~~I~~F~~~~   57 (65)
T 2lnh_A            2 SNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLK-DRETSKVIYDFIEKT   57 (65)
T ss_dssp             CCCSSCCSCCEETTTEECGGGCCTTHHHHHHHHTCCHHHHT-CTTTHHHHHHHHHHH
T ss_pred             CCCEeeeeeeeCCCCCcCCcCCCHHHHHHHHHcCCCHHHHH-CHHHHHHHHHHHHHc
Confidence            7999999999999999 999999999999999999998884 999999999999764

>1cee_B Wiskott-aldrich syndrome protein WAsp; CDC42 actin regulator GTPase and the GTPase binding domain of ITS effector WAsp; HET: GCP; NMR {Homo sapiens}

Probab=99.82  E-value=2.3e-21  Score=134.18  Aligned_cols=51  Identities=27%  Similarity=0.517  Sum_probs=48.2

Q ss_pred             CCCCccCCCCCCeeeeeeeeeCCCcccc--cCcHHHHHHHHHcCCCHHHHhhCh
Q psy13110        103 AEKPVISNPTNFEHTVHVGFDAHTGEFT--GMPEAWARLLMSSNISKLEQKKNP  154 (183)
Q Consensus       103 ~~k~~IS~PtNF~H~~HVg~D~~TGeft--GLP~eW~~lL~~sGISk~E~k~Np  154 (183)
                      ..+++||.|+||+|++|||||+++| |+  |||++|++||+.+|||++|+++|+
T Consensus         4 ~~k~~Is~Ptnf~Hv~HvG~d~~~g-f~~~g~pp~W~~ll~~sGIt~~e~k~n~   56 (59)
T 1cee_B            4 ISKADIGAPSGFKHVSHVGWDPQNG-FDVNNLDPDLRSLFSRAGISEAQLTDAE   56 (59)
T ss_dssp             CCTTTSCCCCCCEEEEEECCCTTTC-CCCSSCCHHHHHHHTTTTSCSSCCCSSC
T ss_pred             CCCCcccCCCCCCCcceeccCCCCC-cccCCCCHHHHHHHHHcCCCHHHHhhcc
Confidence            3568999999999999999999999 77  999999999999999999999987

>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A

Probab=99.74  E-value=7.5e-19  Score=134.65  Aligned_cols=54  Identities=22%  Similarity=0.444  Sum_probs=51.6

Q ss_pred             CCCeeeeeeeeeCCCcccc--cCcHHHHHHHHHcCCCHHHHhhCh--HHHHHHHHhhcc
Q psy13110        112 TNFEHTVHVGFDAHTGEFT--GMPEAWARLLMSSNISKLEQKKNP--QAVLDVLNWFDN  166 (183)
Q Consensus       112 tNF~H~~HVg~D~~TGeft--GLP~eW~~lL~~sGISk~E~k~Np--qaVldVl~Fy~~  166 (183)
                      +||+|++|||||++|| |+  |||++|++||.++|||++|+++|+  ++|+|+|++.+.
T Consensus         1 tnF~Hv~HVG~D~~tG-F~~~glppeWk~LL~~aGITe~elkdn~t~~fI~dfie~~~g   58 (107)
T 1ej5_A            1 SGFKHVSHVGWDPQNG-FDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGG   58 (107)
T ss_dssp             CCCCCCCCCCCBTTTB-CCTTTCCHHHHHHHHHTTCCHHHHSCHHHHHHHHHHHHHTTH
T ss_pred             CCCCcceecccCCCCC-cCCCCCCHHHHHHHHHcCCCHHHHHcCHHHHHHHHHHHHccc
Confidence            6999999999999999 87  999999999999999999999999  999999999874

>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens}

Probab=99.69  E-value=1.1e-17  Score=105.03  Aligned_cols=34  Identities=47%  Similarity=1.023  Sum_probs=33.1

Q ss_pred             ccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHH
Q psy13110        107 VISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL  140 (183)
Q Consensus       107 ~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL  140 (183)
                      +||.|+||+|++|||||++||+|+|||+||+++|
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~f~Glp~eW~~ll   34 (35)
T 2odb_B            1 EISAPQNFQHRVHTSFDPKEGKFVGLPPQWQNIL   34 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTTEEESCCHHHHHHH
T ss_pred             CCcCCCCCcCeeeeeECCCCCcccCCCHHHHHHh
Confidence            5999999999999999999999999999999998

>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens}

Probab=99.67  E-value=7.6e-18  Score=106.38  Aligned_cols=35  Identities=77%  Similarity=1.287  Sum_probs=23.3

Q ss_pred             ccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHH
Q psy13110        107 VISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLM  141 (183)
Q Consensus       107 ~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~  141 (183)
                      +||.|+||+|++|||||++||.|+|||++|++||+
T Consensus         1 ~Is~Ptnf~H~~Hvg~d~~tG~~~glp~~W~~ll~   35 (36)
T 2qme_I            1 EISLPSDFEHTIHVGFDAVTGEFTGMPEQWARLLQ   35 (36)
T ss_dssp             CBCCCEEEEEEEEECCBTTTTBCC-----------
T ss_pred             CCcCCCCCCCeeEcccCCCCCcccCCCHHHHHHHh
Confidence            59999999999999999999999999999999995

>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens}

Probab=99.66  E-value=5e-18  Score=106.53  Aligned_cols=34  Identities=56%  Similarity=1.118  Sum_probs=32.9

Q ss_pred             ccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHH
Q psy13110        107 VISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLL  140 (183)
Q Consensus       107 ~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL  140 (183)
                      +||.|+||+|++|||||++||+|+|||++|++||
T Consensus         1 ~IS~Ptnf~H~~Hvg~d~~tg~~~Glp~eW~~ll   34 (35)
T 2ov2_I            1 EISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLI   34 (35)
T ss_dssp             CBCCCEEEEEEEEEEEETTTTEEESCCGGGTTTC
T ss_pred             CCcCCCCCcCeeeeeeCCCCCcccCCCHHHHHHh
Confidence            5999999999999999999999999999999987

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.63  E-value=6e-18  Score=152.45  Aligned_cols=57  Identities=39%  Similarity=0.746  Sum_probs=6.9

Q ss_pred             CCCccCCCCCCeeeeeeeeeCCCcccccCcHHHHHHHHHcCCCHHHHhhChHHHHHHHHhhccc
Q psy13110        104 EKPVISNPTNFEHTVHVGFDAHTGEFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNS  167 (183)
Q Consensus       104 ~k~~IS~PtNF~H~~HVg~D~~TGeftGLP~eW~~lL~~sGISk~E~k~NpqaVldVl~Fy~~~  167 (183)
                      ++++||.|+||+|++|||||++||+|+|||+||++||+       ++.+|||+|+|++.|+...
T Consensus         4 ~~~~is~p~n~~h~~hvg~d~~tg~f~glP~~W~~ll~-------~~~~~Pq~v~d~~~~~~~~   60 (423)
T 4fie_A            4 KRVEISAPSNFEHRVHTGFDQHEQKFTGLPRQWQSLIE-------ESARRPKPLVDPACITSIQ   60 (423)
T ss_dssp             -------------------------------------------------CCCCEEC--------
T ss_pred             CCCcccCCCCCCceeecCccCCCCCcccCCHHHHHHHH-------HhccCCccccChhhcCCCC
Confidence            56889999999999999999999999999999999995       4568999999999998643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	183
d1ej5a_	107	a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WA	2e-16

>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All alpha proteins
fold: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
superfamily: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
family: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
domain: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (169), Expect = 2e-16
 Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 112 TNFEHTVHVGFDAHTG-EFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNSTKE 170
           + F+H  HVG+D   G +   +      L   + IS+  Q  + +    + ++ ++    
Sbjct: 1   SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISE-AQLTDAETSKLIYDFIEDQGGL 59

Query: 171 AKGSKYM 177
               + M
Sbjct: 60  EAVRQEM 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	183
d1ej5a_	107	Wiscott-Aldrich syndrome protein, WASP, C-terminal	99.78
d1b0na1	35	SinR repressor dimerisation domain {Bacillus subti	90.31

>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
superfamily: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
family: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
domain: Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.7e-20  Score=139.81  Aligned_cols=56  Identities=18%  Similarity=0.450  Sum_probs=52.8

Q ss_pred             CCCeeeeeeeeeCCCc-ccccCcHHHHHHHHHcCCCHHHHhhChHHHHHHHHhhcccc
Q psy13110        112 TNFEHTVHVGFDAHTG-EFTGMPEAWARLLMSSNISKLEQKKNPQAVLDVLNWFDNST  168 (183)
Q Consensus       112 tNF~H~~HVg~D~~TG-eftGLP~eW~~lL~~sGISk~E~k~NpqaVldVl~Fy~~~~  168 (183)
                      +||+|++|||||++|| +|+|||++|++||+.+|||++|+ +||+++.+|++||++..
T Consensus         1 snF~Hv~HVG~D~~tGf~~~glp~eW~~lL~~sGIsk~~l-kd~et~~~I~~Fiek~g   57 (107)
T d1ej5a_           1 SGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQL-TDAETSKLIYDFIEDQG   57 (107)
T ss_dssp             CCCCCCCCCCCBTTTBCCTTTCCHHHHHHHHHTTCCHHHH-SCHHHHHHHHHHHHHTT
T ss_pred             CCCeeeeeeeecCCCCccccCCCHHHHHHHHHcCCCHHHh-cCHHHHHHHHHHHHHcC
Confidence            6999999999999999 89999999999999999999998 69999999999997664

>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: Dimerisation interlock
superfamily: SinR repressor dimerisation domain-like
family: SinR repressor dimerisation domain-like
domain: SinR repressor dimerisation domain
species: Bacillus subtilis [TaxId: 1423]

Probab=90.31  E-value=0.11  Score=30.82  Aligned_cols=21  Identities=24%  Similarity=0.585  Sum_probs=18.2

Q ss_pred             CcHHHHHHHH---HcCCCHHHHhh
Q psy13110        132 MPEAWARLLM---SSNISKLEQKK  152 (183)
Q Consensus       132 LP~eW~~lL~---~sGISk~E~k~  152 (183)
                      |+.||..|.+   +||||+++.++
T Consensus         1 LDseW~~lVkeAM~SGvSK~QFrE   24 (35)
T d1b0na1           1 LDSEWEKLVRDAMTSGVSKKQFRE   24 (35)
T ss_dssp             CCHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHccCCHHHHHH
Confidence            6789999988   69999999873