Psyllid ID: psy13138

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--

MRYSRSYLSVIFFFCLPKLNWTILLFNTPYESGYMVDRNFGEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQPWADSENVNKYVNKFNELDGYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHWYAYVIGLNSWNLTSATVSNSDWLIVNIRHSLSQPCPKQNDQKLVNTENK

cccccccccEEHHccccccccEEEcccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEccccccEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEEEEEcccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHccEEEEEEcccccccccccEEcccccEEEEEEccccccccccccccccccccc

ccccHHHHHHHEEccccccccEEEccccccccccEcccccccccccccEEEEccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccEEEEEEEEcccccEEEEcccccEEEEEEEEEEcccEEcccccccccccHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEccccccccccccEEEEEEEEEEcccccEEcEEEcccccccccEEEEEEcccccccccHHHHHHHHHHHcccEEEEEEHcHHHHcccccccccccEEEEEEHccccccccccccccEEccccc

MRYSRSYLSVIFFFClpklnwtillfntpyesgymvdrnfgefyprsnvtrlklpkekyYVWEFALrsynpeyfvhpsvigqpwadsenvnKYVNKFNEldgyidrrrccnvkyeldyntgrplnpsgrtgicgrgllgrwgpnhsaFLIVTRWfrdhngdkvtmpssgkpllEFVTVKfngewgipggfiegketYMDRGRKEFLEEALNASNMTAKESKSILKHLETvmddnchfvyrgymkderntdnawVEGAVTTVhdkkgehfmalplspgdgaedVKWLIVHsdmtfnpthKTFMKVVTDIHGAHWYAYVIGLNSWNltsatvsnsdWLIVNIRhslsqpcpkqndqklvntenk

MRYSRSYLSVIFFFCLPKLNWTILLFNTPYESGYMVDRNFGEFyprsnvtrlklpkEKYYVWEFALRSYNPEYFVHPSVIGQPWADSENVNKYVNKFNeldgyidrrRCCNVKYELdyntgrplnpsgrTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKvtmpssgkplLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHWYAYVIGLNSWNLTSATVSNSDWLIVNIRHslsqpcpkqndqklvntenk

*****SYLSVIFFFCLPKLNWTILLFNTPYESGYMVDRNFGEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQPWADSENVNKYVNKFNELDGYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRG*********************ILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHWYAYVIGLNSWNLTSATVSNSDWLIVNIRH********************

**********IFFFCLPKL**************YMVDRNFGEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQPWADSENVNKYVNKFNELDGYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEE*****************HLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHWYAYVIGLNSWNLTSATVSNSDWLIVNIRHSLS*****************

*RYSRSYLSVIFFFCLPKLNWTILLFNTPYESGYMVDRNFGEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQPWADSENVNKYVNKFNELDGYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKFNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHWYAYVIGLNSWNLTSATVSNSDWLIVNIRHSLSQPCPKQNDQ*LV*****

iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		362	2.2.26 [Sep-21-2011]
Q8BVU5		350	ADP-ribose pyrophosphatas	yes	N/A	0.734	0.76	0.423	5e-56
Q5XIG0		350	ADP-ribose pyrophosphatas	yes	N/A	0.734	0.76	0.423	5e-56
Q9BW91		350	ADP-ribose pyrophosphatas	yes	N/A	0.734	0.76	0.419	8e-55
Q09297		260	Putative nudix hydrolase	yes	N/A	0.682	0.95	0.389	7e-39
O94759		1503	Transient receptor potent	no	N/A	0.687	0.165	0.317	3e-25
Q91YD4		1507	Transient receptor potent	no	N/A	0.687	0.165	0.297	2e-23
P34641		1418	Protein ced-11 OS=Caenorh	no	N/A	0.298	0.076	0.301	0.0005

>sp\|Q8BVU5\|NUDT9_MOUSE ADP-ribose pyrophosphatase, mitochondrial OS=Mus musculus GN=Nudt9 PE=2 SV=1	Back alignment and function desciption

 Score =  218 bits (556), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 116/274 (42%), Positives = 163/274 (59%), Gaps = 8/274 (2%)

Query: 44  YPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSE-NVNKYVNKFNELD 101
           YP S V R ++P EK   W    + YNP  +   SV+  P WAD + + + +  KFNE D
Sbjct: 70  YPGSKVERSQVPNEKVG-WLVEWQDYNPVEYTAVSVLAGPQWADPQISESNFSPKFNEKD 128

Query: 102 GYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGD 161
           G+++R+   N  YE++   GRP NP+GRTG+ GRGLLGRWGPNH+A  I+TRW RD +G+
Sbjct: 129 GHVERK-SQNGLYEIE--NGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDESGN 185

Query: 162 KVTMPSSGKPLLEFVTVKFN--GEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKE 219
           K+T P SGK +L+FV +K    GEW IPGG ++  E      ++EF EEALN+   ++ E
Sbjct: 186 KITHPVSGKCILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSSAE 245

Query: 220 SKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDG 279
            + I + L  +       +Y+GY+ D RNTDNAW+E      HD+ GE    L L  GD 
Sbjct: 246 KREIEEKLHALFSQEHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGETMDNLTLEAGDD 305

Query: 280 AEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW 313
           A  VKW+ +   +    +H  F+K+V +   AHW
Sbjct: 306 AGKVKWVDISDQLKLYASHSQFIKLVAEKRDAHW 339

Hydrolyzes ADP-ribose (ADPR) to AMP and ribose 5'-phosphate.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 3

>sp\|Q5XIG0\|NUDT9_RAT ADP-ribose pyrophosphatase, mitochondrial OS=Rattus norvegicus GN=Nudt9 PE=2 SV=1	Back alignment and function description

>sp\|Q9BW91\|NUDT9_HUMAN ADP-ribose pyrophosphatase, mitochondrial OS=Homo sapiens GN=NUDT9 PE=1 SV=1	Back alignment and function description

>sp\|Q09297\|NDX6_CAEEL Putative nudix hydrolase 6 OS=Caenorhabditis elegans GN=ndx-6 PE=3 SV=2	Back alignment and function description

>sp\|O94759\|TRPM2_HUMAN Transient receptor potential cation channel subfamily M member 2 OS=Homo sapiens GN=TRPM2 PE=1 SV=2	Back alignment and function description

>sp\|Q91YD4\|TRPM2_MOUSE Transient receptor potential cation channel subfamily M member 2 OS=Mus musculus GN=Trpm2 PE=2 SV=1	Back alignment and function description

>sp\|P34641\|CED11_CAEEL Protein ced-11 OS=Caenorhabditis elegans GN=ced-11 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		362
432108031		350	ADP-ribose pyrophosphatase, mitochondria	0.734	0.76	0.423	1e-54
431838991		378	ADP-ribose pyrophosphatase, mitochondria	0.734	0.703	0.430	1e-54
449276566		322	ADP-ribose pyrophosphatase, mitochondria	0.823	0.925	0.405	2e-54
354503887		350	PREDICTED: ADP-ribose pyrophosphatase, m	0.734	0.76	0.423	2e-54
21706762		350	Nudix (nucleoside diphosphate linked moi	0.734	0.76	0.423	3e-54
27753998		350	ADP-ribose pyrophosphatase, mitochondria	0.734	0.76	0.423	3e-54
55741431		350	ADP-ribose pyrophosphatase, mitochondria	0.734	0.76	0.423	3e-54
335773078		300	mitochondrial ADP-ribose pyrophosphatase	0.734	0.886	0.419	4e-54
148688286		300	mCG1163 [Mus musculus]	0.734	0.886	0.423	4e-54
149046732		300	nudix (nucleoside diphosphate linked moi	0.734	0.886	0.423	5e-54

>gi\|432108031\|gb\|ELK33018.1\| ADP-ribose pyrophosphatase, mitochondrial [Myotis davidii]	Back alignment and taxonomy information

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/274 (42%), Positives = 164/274 (59%), Gaps = 8/274 (2%)

Query: 44  YPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSE-NVNKYVNKFNELD 101
           YP S V R ++P EK   W    + YNP  +   SV+  P WAD + + + +  KFNE D
Sbjct: 70  YPGSKVQRSQVPNEKVG-WLVEWQDYNPVEYTAVSVLAGPRWADPQISESNFSPKFNEKD 128

Query: 102 GYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGD 161
           G+++R+   N +YE++   GRP NP+GRTG+ GRGLLGRWGPNH+A  I+TRW RD +G+
Sbjct: 129 GHVERK-SQNGRYEIE--NGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDKSGN 185

Query: 162 KVTMPSSGKPLLEFVTVKFN--GEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKE 219
           K+T P SGK +L+FV +K    GEW IPGG ++  E      ++EF EEALN+   ++ E
Sbjct: 186 KITHPISGKNILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSSAE 245

Query: 220 SKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDG 279
            K + + L  +       +Y+GY+ D RNTDNAW+E      HD+ GE    L L  GD 
Sbjct: 246 KKQLEEQLHKLFSQEHLVIYKGYVDDPRNTDNAWIETEAVNYHDETGEIMDNLTLEAGDD 305

Query: 280 AEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW 313
           A  VKW+ +   +    +H  F+K+V +   AHW
Sbjct: 306 AGKVKWVDISDKLKLYASHAQFIKLVAEKRDAHW 339

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi\|431838991\|gb\|ELK00920.1\| ADP-ribose pyrophosphatase, mitochondrial [Pteropus alecto]	Back alignment and taxonomy information

>gi\|449276566\|gb\|EMC85028.1\| ADP-ribose pyrophosphatase, mitochondrial [Columba livia]	Back alignment and taxonomy information

>gi\|354503887\|ref\|XP_003514012.1\| PREDICTED: ADP-ribose pyrophosphatase, mitochondrial [Cricetulus griseus] gi\|344258379\|gb\|EGW14483.1\| ADP-ribose pyrophosphatase, mitochondrial [Cricetulus griseus]	Back alignment and taxonomy information

>gi\|21706762\|gb\|AAH33921.1\| Nudix (nucleoside diphosphate linked moiety X)-type motif 9 [Mus musculus]	Back alignment and taxonomy information

>gi|27753998|ref|NP_083070.2| ADP-ribose pyrophosphatase, mitochondrial [Mus musculus] gi|67461048|sp|Q8BVU5.1|NUDT9_MOUSE RecName: Full=ADP-ribose pyrophosphatase, mitochondrial; AltName: Full=ADP-ribose diphosphatase; AltName: Full=ADP-ribose phosphohydrolase; AltName: Full=Adenosine diphosphoribose pyrophosphatase; Short=ADPR-PPase; AltName: Full=Nucleoside diphosphate-linked moiety X motif 9; Short=Nudix motif 9; Flags: Precursor gi|26345430|dbj|BAC36366.1| unnamed protein product [Mus musculus] gi|74192318|dbj|BAE34342.1| unnamed protein product [Mus musculus]

Back alignment and taxonomy information

>gi|55741431|ref|NP_001006992.1| ADP-ribose pyrophosphatase, mitochondrial [Rattus norvegicus] gi|67460640|sp|Q5XIG0.1|NUDT9_RAT RecName: Full=ADP-ribose pyrophosphatase, mitochondrial; AltName: Full=ADP-ribose diphosphatase; AltName: Full=ADP-ribose phosphohydrolase; AltName: Full=Adenosine diphosphoribose pyrophosphatase; Short=ADPR-PPase; AltName: Full=Nucleoside diphosphate-linked moiety X motif 9; Short=Nudix motif 9; Flags: Precursor gi|53733520|gb|AAH83722.1| Nudix (nucleoside diphosphate linked moiety X)-type motif 9 [Rattus norvegicus]

Back alignment and taxonomy information

>gi\|335773078\|gb\|AEH58273.1\| mitochondrial ADP-ribose pyrophosphatase-like protein [Equus caballus]	Back alignment and taxonomy information

>gi\|148688286\|gb\|EDL20233.1\| mCG1163 [Mus musculus]	Back alignment and taxonomy information

>gi\|149046732\|gb\|EDL99506.1\| nudix (nucleoside diphosphate linked moiety X)-type motif 9, isoform CRA_b [Rattus norvegicus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		362
RGD\|1359522		350	Nudt9 "nudix (nucleoside dipho	0.734	0.76	0.423	1.8e-55
MGI\|MGI:1921417		350	Nudt9 "nudix (nucleoside dipho	0.734	0.76	0.423	2.3e-55
UNIPROTKB\|F1NSM1		316	NUDT9 "Uncharacterized protein	0.732	0.838	0.432	3.7e-55
UNIPROTKB\|F1RW31		350	NUDT9 "Uncharacterized protein	0.734	0.76	0.423	3.7e-55
UNIPROTKB\|Q9BW91		350	NUDT9 "ADP-ribose pyrophosphat	0.734	0.76	0.419	2.1e-54
UNIPROTKB\|E2RPH0		350	NUDT9 "Uncharacterized protein	0.734	0.76	0.416	2.6e-54
UNIPROTKB\|A7MBI8		349	NUDT9 "Uncharacterized protein	0.734	0.762	0.416	7e-54
ZFIN\|ZDB-GENE-040426-2669		335	nudt9 "nudix (nucleoside dipho	0.732	0.791	0.406	2.8e-50
UNIPROTKB\|H7C386		284	NUDT9 "ADP-ribose pyrophosphat	0.455	0.580	0.467	2.5e-43
FB\|FBgn0036648		311	CG4098 [Drosophila melanogaste	0.734	0.855	0.371	1.9e-42

RGD\|1359522 Nudt9 "nudix (nucleoside diphosphate linked moiety X)-type motif 9" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 116/274 (42%), Positives = 163/274 (59%)

Query:    44 YPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSE-NVNKYVNKFNELD 101
             YP S V R K+P EK   W    + YNP  +   SV+  P WAD + + + +  +FNE D
Sbjct:    70 YPGSKVERSKVPNEKVG-WLVEWQDYNPVEYTAVSVLAGPQWADPQISESSFSPRFNEKD 128

Query:   102 GYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGD 161
             G+++R+   N  YE++   GRP NP+GRTG+ GRGLLGRWGPNH+A  I+TRW RD +G+
Sbjct:   129 GHVERKSQ-NGLYEIE--NGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDESGN 185

Query:   162 KVTMPSSGKPLLEFVTVKFN--GEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKE 219
             K+T P SGK +L+FV +K    GEW IPGG ++  E      ++EF EEALN+   ++ E
Sbjct:   186 KITHPVSGKCILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSSAE 245

Query:   220 SKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDG 279
              + I + L  +       +Y+GY+ D RNTDNAW+E      HD+ GE    L L  GD 
Sbjct:   246 KREIEEKLHALFSQEHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGETMDNLTLEAGDD 305

Query:   280 AEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW 313
             A  VKW+ +   +    +H  F+K+V +   AHW
Sbjct:   306 AGKVKWVDISDQLKLYASHSQFIKLVAEKRDAHW 339

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0043262 "adenosine-diphosphatase activity" evidence=IEA;ISO

GO:0046032 "ADP catabolic process" evidence=IEA;ISO

GO:0046709 "IDP catabolic process" evidence=IEA;ISO

GO:0047631 "ADP-ribose diphosphatase activity" evidence=IEA

MGI\|MGI:1921417 Nudt9 "nudix (nucleoside diphosphate linked moiety X)-type motif 9" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NSM1 NUDT9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RW31 NUDT9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BW91 NUDT9 "ADP-ribose pyrophosphatase, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RPH0 NUDT9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A7MBI8 NUDT9 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-2669 nudt9 "nudix (nucleoside diphosphate linked moiety X)-type motif 9" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|H7C386 NUDT9 "ADP-ribose pyrophosphatase, mitochondrial" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

FB\|FBgn0036648 CG4098 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9BW91	NUDT9_HUMAN	3, ., 6, ., 1, ., 1, 3	0.4197	0.7348	0.76	yes	N/A
Q8BVU5	NUDT9_MOUSE	3, ., 6, ., 1, ., 1, 3	0.4233	0.7348	0.76	yes	N/A
Q09297	NDX6_CAEEL	3, ., -, ., -, ., -	0.3890	0.6823	0.95	yes	N/A
Q5XIG0	NUDT9_RAT	3, ., 6, ., 1, ., 1, 3	0.4233	0.7348	0.76	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		362
cd03670		186	cd03670, ADPRase_NUDT9, ADP-ribose pyrophosphatase	2e-59
cd04677		132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	2e-04
cd04667		112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	0.001
cd02883		123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	0.001
cd04674		118	cd04674, Nudix_Hydrolase_16, Members of the Nudix	0.002

>gnl\|CDD\|239642 cd03670, ADPRase_NUDT9, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P	Back alignment and domain information

 Score =  190 bits (483), Expect = 2e-59
 Identities = 85/188 (45%), Positives = 111/188 (59%), Gaps = 5/188 (2%)

Query: 125 NPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKF--NG 182
           NP GRTG+ GRGLLGRWGPNH+A  IVTRW RD +GD    P SGKP+L+FV +K   +G
Sbjct: 1   NPMGRTGLTGRGLLGRWGPNHAADPIVTRWKRDSSGDGSIHPKSGKPILQFVAIKRPDSG 60

Query: 183 EWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHF-VYRG 241
           EW IPGG ++  E      ++EF EEALN+   + +E + I K +E          VY+G
Sbjct: 61  EWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFS--KDGVEVYKG 118

Query: 242 YMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDGAEDVKWLIVHSDMTFNPTHKTF 301
           Y+ D RNTDNAW+E      HD+ G     LPL  GD A  V+W  + S +     H  F
Sbjct: 119 YVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANHSQF 178

Query: 302 MKVVTDIH 309
           +K V ++ 
Sbjct: 179 LKKVAELR 186

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer. Length = 186

>gnl\|CDD\|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		362
KOG4195\|consensus		275		100.0
cd03670		186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	100.0
COG1051		145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.62
PRK05379		340	bifunctional nicotinamide mononucleotide adenylylt	99.56
cd03674		138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.55
cd04679		125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.5
cd04696		125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.47
cd03673		131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.47
cd03427		137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.46
PRK15434		159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.45
cd03430		144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.43
PLN02325		144	nudix hydrolase	99.43
cd04695		131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.43
cd04677		132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.4
cd04684		128	Nudix_Hydrolase_25 Contains a crystal structure of	99.39
cd03428		130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.37
cd04672		123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.36
PRK15472		141	nucleoside triphosphatase NudI; Provisional	99.36
cd04688		126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.35
cd04681		130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.34
cd04678		129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.34
cd04689		125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.34
cd04680		120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.33
cd04687		128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.32
PRK09438		148	nudB dihydroneopterin triphosphate pyrophosphatase	99.31
cd04691		117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.31
cd04666		122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.3
cd04683		120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.3
cd03672		145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.3
cd04673		122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.3
cd04661		132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.29
cd04690		118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.29
cd04511		130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.29
cd04667		112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.28
cd04700		142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.26
cd04676		129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.26
cd03675		134	Nudix_Hydrolase_2 Contains a crystal structure of	99.26
PRK10546		135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.26
cd04671		123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.25
PF00293		134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.25
cd04686		131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.22
cd04669		121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.2
cd03671		147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.19
cd04662		126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.19
cd03426		157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.17
PRK00714		156	RNA pyrophosphohydrolase; Reviewed	99.16
cd03429		131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.15
PRK00241		256	nudC NADH pyrophosphatase; Reviewed	99.14
PRK10776		129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.12
cd04670		127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.1
cd04682		122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.09
cd04664		129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.09
cd04692		144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.04
cd02885		165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.03
cd03425		124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.02
cd02883		123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.0
cd04699		129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.0
TIGR00586		128	mutt mutator mutT protein. All proteins in this fa	99.0
cd03424		137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	98.97
PRK10707		190	putative NUDIX hydrolase; Provisional	98.95
cd04697		126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	98.92
cd04665		118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	98.91
cd04674		118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	98.89
cd04693		127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	98.88
PRK15393		180	NUDIX hydrolase YfcD; Provisional	98.88
cd04663		126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	98.85
cd04694		143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	98.83
TIGR02150		158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	98.79
PRK03759		184	isopentenyl-diphosphate delta-isomerase; Provision	98.78
cd04685		133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	98.77
PLN02709		222	nudix hydrolase	98.72
PRK11762		185	nudE adenosine nucleotide hydrolase NudE; Provisio	98.72
KOG2839\|consensus		145		98.7
PRK08999		312	hypothetical protein; Provisional	98.62
cd03676		180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	98.6
COG0494		161	MutT NTP pyrophosphohydrolases including oxidative	98.59
COG4119		161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.47
TIGR00052		185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	98.46
PRK10729		202	nudF ADP-ribose pyrophosphatase NudF; Provisional	98.42
TIGR02705		156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	98.4
KOG0648\|consensus		295		98.35
COG2816		279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	98.14
KOG3084\|consensus		345		98.08
KOG3069\|consensus		246		98.0
PLN02791		770	Nudix hydrolase homolog	97.98
PLN02552		247	isopentenyl-diphosphate delta-isomerase	97.98
PRK15009		191	GDP-mannose pyrophosphatase NudK; Provisional	97.97
KOG3041\|consensus		225		97.79
PLN03143		291	nudix hydrolase; Provisional	97.74
cd03431		118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	97.34
PF14815		114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	94.19
PLN02839		372	nudix hydrolase	93.36
COG1443		185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	92.11
PF13869		188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	91.53
PF14443		126	DBC1: DBC1	87.28
KOG1689\|consensus		221		84.91
KOG2937\|consensus		348		82.16

>KOG4195\|consensus	Back alignment and domain information

Probab=100.00  E-value=2.3e-97  Score=672.73  Aligned_cols=268  Identities=41%  Similarity=0.762  Sum_probs=256.4

Q ss_pred             ccccCcCCCCCCCCCeeEeeCCCCccccceecCCCcCCCcccCCCCCCCCCCCCCCC-cccCccccccCCccceeeeece
Q psy13138         34 YMVDRNFGEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQPWADSENV-NKYVNKFNELDGYIDRRRCCNV  112 (362)
Q Consensus        34 ~~~~~~r~~~Yp~s~~~R~~Vp~~~v~~W~~~~~~Y~P~~yt~~~~~~~~waD~~~~-~~~~~~~N~~Dg~v~R~S~~~g  112 (362)
                      +-|++||++.||||+|.||+||++|| +|+++|++|+||+||||.++++-||||++. ++|.|+||++||+|+|+|| +|
T Consensus         5 ~~h~~~r~~~Yp~s~V~R~~VpnekV-~W~~e~~~Y~Pp~yTa~~v~~a~wadp~i~e~~f~pq~N~~DG~vnR~Sf-~g   82 (275)
T KOG4195|consen    5 SYHVNARHLLYPGSPVTRFPVPNEKV-PWSTEFLDYDPPAYTAPRVDAAVWADPDILEPTFTPQWNVVDGLVNRRSF-HG   82 (275)
T ss_pred             chhhhcccccCCCCcceeccCCcccc-ccccccccCCCcccccccccccccCCCCCCccccCccccccccceeceec-cc
Confidence            46789999999999999999999999 999999999999999999999779999998 7899999999999999999 99


Q ss_pred             eeEeeCCCCCCCCCCCCcccccccccCccCCCccceEEEEEeeecCCCCeEeccCCCCCeeEEEEEEe--CCeeeCceee
Q psy13138        113 KYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKF--NGEWGIPGGF  190 (362)
Q Consensus       113 ~y~vd~~~G~P~NP~GRTGl~GRG~L~rwGPNhAad~VVtRw~~~~~G~iv~~~~~~k~vLevLlIkR--~g~WaLPGG~  190 (362)
                      .|.|  ++|+||||+||||++|||+|||||||||||||||||+||++|++|++  ++|++|||++|||  +|+|||||||
T Consensus        83 ~Y~v--q~g~PlNPiGRTGL~GRG~LgrwGPNHaadPiVtRwkrd~~gai~~~--sgk~ile~vavkr~d~~~WAiPGGm  158 (275)
T KOG4195|consen   83 PYTV--QNGLPLNPIGRTGLRGRGSLGRWGPNHAADPIVTRWKRDEDGAICRK--SGKKILEFVAVKRPDNGEWAIPGGM  158 (275)
T ss_pred             ceee--ccCCcCCCcccccccccccccccCCccccCcceeeeeecCCCCeeec--ccceeeEEEEEecCCCCcccCCCCc
Confidence            9999  89999999999999999999999999999999999999999999996  8999999999999  9999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCccEEEEEEEEEEecCCCccc
Q psy13138        191 IEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFM  270 (362)
Q Consensus       191 Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDnAWietva~~~h~~~g~~~~  270 (362)
                      ||+||.++++|+|||.||+..++..+.+      +++.++|++.|.++|+||||||||||||||||+|++||++.|+.++
T Consensus       159 vdpGE~vs~tLkRef~eEa~ns~~k~~e------~~l~~~~~~~g~evYkGYvDDpRNTDNaWmET~avn~hde~g~~~~  232 (275)
T KOG4195|consen  159 VDPGEKVSATLKREFGEEAMNSLQKSNE------EMLHKLLSQCGMEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNNMD  232 (275)
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHhhhhH------HHHHHHHHhCCeEEeeeecCCCCcccccceeEEEEeeeccccchhc
Confidence            9999999999999999999998765421      3567777777999999999999999999999999999999999999


Q ss_pred             ccCCCCCCcccceEEEecCCCCCCCcCHHHHHHHHHHHhcCcc
Q psy13138        271 ALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW  313 (362)
Q Consensus       271 ~~~l~a~dda~~v~W~~vd~~lpL~asH~~iL~~a~~~~~a~~  313 (362)
                      ++.|++|||+.+++|++|++.++|||+|++||+++++.++|||
T Consensus       233 nl~L~AgDda~~vrW~dVn~~l~LyAshs~fi~lvae~r~aHw  275 (275)
T KOG4195|consen  233 NLNLEAGDDAKKVRWVDVNSNLPLYASHSQFIQLVAEKRGAHW  275 (275)
T ss_pred             cccccccCcccceeEEEecCCccchhhHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999997

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P	Back alignment and domain information

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	Back alignment and domain information

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional	Back alignment and domain information

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional	Back alignment and domain information

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>PLN02325 nudix hydrolase	Back alignment and domain information

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	Back alignment and domain information

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK15472 nucleoside triphosphatase NudI; Provisional	Back alignment and domain information

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional	Back alignment and domain information

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex	Back alignment and domain information

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities	Back alignment and domain information

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	Back alignment and domain information

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional	Back alignment and domain information

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []	Back alignment and domain information

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	Back alignment and domain information

>PRK00714 RNA pyrophosphohydrolase; Reviewed	Back alignment and domain information

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP	Back alignment and domain information

>PRK00241 nudC NADH pyrophosphatase; Reviewed	Back alignment and domain information

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional	Back alignment and domain information

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway	Back alignment and domain information

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	Back alignment and domain information

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>TIGR00586 mutt mutator mutT protein	Back alignment and domain information

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	Back alignment and domain information

>PRK10707 putative NUDIX hydrolase; Provisional	Back alignment and domain information

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK15393 NUDIX hydrolase YfcD; Provisional	Back alignment and domain information

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1	Back alignment and domain information

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional	Back alignment and domain information

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PLN02709 nudix hydrolase	Back alignment and domain information

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional	Back alignment and domain information

>KOG2839\|consensus	Back alignment and domain information

>PRK08999 hypothetical protein; Provisional	Back alignment and domain information

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family	Back alignment and domain information

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional	Back alignment and domain information

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD	Back alignment and domain information

>KOG0648\|consensus	Back alignment and domain information

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3084\|consensus	Back alignment and domain information

>KOG3069\|consensus	Back alignment and domain information

>PLN02791 Nudix hydrolase homolog	Back alignment and domain information

>PLN02552 isopentenyl-diphosphate delta-isomerase	Back alignment and domain information

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional	Back alignment and domain information

>KOG3041\|consensus	Back alignment and domain information

>PLN03143 nudix hydrolase; Provisional	Back alignment and domain information

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread AoxoG residues to CG by removing the inappropriately paired adenine base from the DNA backbone	Back alignment and domain information

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A	Back alignment and domain information

>PLN02839 nudix hydrolase	Back alignment and domain information

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]	Back alignment and domain information

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A	Back alignment and domain information

>PF14443 DBC1: DBC1	Back alignment and domain information

>KOG1689\|consensus	Back alignment and domain information

>KOG2937\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		362
1q33_A		292	Crystal Structure Of Human Adp-Ribose Pyrophosphata		5e-55

>pdb|1Q33|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase Nudt9 Length = 292

Back alignment and structure

Iteration: 1

Score = 211 bits (537), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 115/274 (41%), Positives = 162/274 (59%), Gaps = 8/274 (2%) Query: 44 YPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSE-NVNKYVNKFNELD 101 YP S V R ++P EK W + Y P + SV+ P WAD + + + + KFNE D Sbjct: 12 YPGSKVERSQVPNEKVG-WLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFNEKD 70 Query: 102 GYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGD 161 G+++R+ N YE++ GRP NP+GRTG+ GRGLLGRWGPNH+A I+TRW RD +G+ Sbjct: 71 GHVERK-SKNGLYEIE--NGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGN 127 Query: 162 KVTMPSSGKPLLEFVTVKFN--GEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKE 219 K+ P SGK +L+FV +K GEW IPGG ++ E ++EF EEALN+ T+ E Sbjct: 128 KIXHPVSGKHILQFVAIKRKDCGEWAIPGGXVDPGEKISATLKREFGEEALNSLQKTSAE 187 Query: 220 SKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDG 279 + I + L + + +Y+GY+ D RNTDNAW E HD+ GE L L GD Sbjct: 188 KREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWXETEAVNYHDETGEIXDNLXLEAGDD 247 Query: 280 AEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW 313 A VKW+ ++ + +H F+K+V + AHW Sbjct: 248 AGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHW 281

PyMOL of 1q33

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		362
1q33_A		292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	2e-71
2xsq_A		217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	7e-04
3gg6_A		156	Nudix motif 18, nucleoside diphosphate-linked moie	8e-04

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292	Back alignment and structure

 Score =  223 bits (570), Expect = 2e-71
 Identities = 114/277 (41%), Positives = 160/277 (57%), Gaps = 8/277 (2%)

Query: 41  GEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSENVNKYVN-KFN 98
              YP S V R ++P EK   W    + Y P  +   SV+  P WAD +      + KFN
Sbjct: 9   TSPYPGSKVERSQVPNEKVG-WLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFN 67

Query: 99  ELDGYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDH 158
           E DG+++R+      YE++   GRP NP+GRTG+ GRGLLGRWGPNH+A  I+TRW RD 
Sbjct: 68  EKDGHVERKSKN-GLYEIE--NGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDS 124

Query: 159 NGDKVTMPSSGKPLLEFVTVK--FNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMT 216
           +G+K+  P SGK +L+FV +K    GEW IPGG ++  E      ++EF EEALN+   T
Sbjct: 125 SGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKT 184

Query: 217 AKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSP 276
           + E + I + L  +   +   +Y+GY+ D RNTDNAW+E      HD+ GE    L L  
Sbjct: 185 SAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEA 244

Query: 277 GDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW 313
           GD A  VKW+ ++  +    +H  F+K+V +   AHW
Sbjct: 245 GDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHW 281

PyMOL of 1q33

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A Length = 217	Back alignment and structure

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		362
1q33_A		292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	100.0
2fml_A		273	MUTT/nudix family protein; structural genomics, PS	99.78
2fb1_A		226	Conserved hypothetical protein; structural genomic	99.74
3gz5_A		240	MUTT/nudix family protein; DNA binding protein, nu	99.73
3i7u_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	99.71
3u53_A		155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.63
3i9x_A		187	MUTT/nudix family protein; structural genomics, hy	99.63
2yyh_A		139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.62
3son_A		149	Hypothetical nudix hydrolase; structural genomics,	99.54
2pbt_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	99.47
1ktg_A		138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.47
3q1p_A		205	Phosphohydrolase (MUTT/nudix family protein); asym	99.46
2qjo_A		341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.45
2qjt_B		352	Nicotinamide-nucleotide adenylyltransferase; two i	99.45
4dyw_A		157	MUTT/nudix family protein; structural genomics, ni	99.44
2b06_A		155	MUTT/nudix family protein; structural genomics, P	99.44
3fk9_A		188	Mutator MUTT protein; structural genomics, hydrola	99.43
3shd_A		153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.43
3f6a_A		159	Hydrolase, nudix family; protein structure initiat	99.42
3f13_A		163	Putative nudix hydrolase family member; structural	99.42
3o8s_A		206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.42
1vcd_A		126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.41
3ees_A		153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.4
3oga_A		165	Nucleoside triphosphatase NUDI; salmonella enteric	99.4
3cng_A		189	Nudix hydrolase; structural genomics, APC7497, PSI	99.39
2o1c_A		150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.38
1k2e_A		156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.38
3fcm_A		197	Hydrolase, nudix family; protein structure initiat	99.38
3grn_A		153	MUTT related protein; structural genomics, hydrola	99.37
2azw_A		148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.37
3fjy_A		364	Probable MUTT1 protein; dimer, protein structure i	99.36
3gwy_A		140	Putative CTP pyrophosphohydrolase; structural geno	99.34
3gg6_A		156	Nudix motif 18, nucleoside diphosphate-linked moie	99.34
3exq_A		161	Nudix family hydrolase; protein structure initiati	99.34
3r03_A		144	Nudix hydrolase; structural genomics, PSI2, protei	99.33
3q93_A		176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.32
3hhj_A		158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.31
1rya_A		160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.3
3id9_A		171	MUTT/nudix family protein; hydrolase, protein stru	99.29
2pqv_A		154	MUTT/nudix family protein; structu genomics, PSI-2	99.29
3h95_A		199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.29
1vk6_A		269	NADH pyrophosphatase; 1790429, structural genomics	99.28
2rrk_A		140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.27
2b0v_A		153	Nudix hydrolase; structural genomics, PSI, protein	99.26
2kdv_A		164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.25
3eds_A		153	MUTT/nudix family protein; MUT/nudix protein, prot	99.25
2fkb_A		180	Putative nudix hydrolase YFCD; putative protein, M	99.25
1mut_A		129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.23
1f3y_A		165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.22
1hzt_A		190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.19
2fvv_A		194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.17
1sjy_A		159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.12
2jvb_A		146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.08
1q27_A		171	Putative nudix hydrolase DR0079; radiation resista	99.07
1x51_A		155	A/G-specific adenine DNA glycosylase; nudix domain	99.05
2w4e_A		145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.05
2a6t_A		271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	98.99
1vhz_A		198	ADP compounds hydrolase NUDE; structural genomics;	98.98
3e57_A		211	Uncharacterized protein TM1382; structural genomic	98.97
2yvp_A		182	NDX2, MUTT/nudix family protein; nudix protein, AD	98.97
1nqz_A		194	COA pyrophosphatase (MUTT/nudix family protein); D	98.96
2dsc_A		212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	98.96
1v8y_A		170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	98.95
1u20_A		212	U8 snoRNA-binding protein X29; modified nudix hydr	98.89
1mk1_A		207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	98.87
3o6z_A		191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	98.82
1g0s_A		209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	98.81
3fsp_A		369	A/G-specific adenine glycosylase; protein-DNA comp	98.79
3qsj_A		232	Nudix hydrolase; structural genomics, PSI-biology,	98.77
2xsq_A		217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	98.76
3q91_A		218	Uridine diphosphate glucose pyrophosphatase; struc	98.72
3rh7_A		321	Hypothetical oxidoreductase; FMN-binding split bar	98.57
3kvh_A		214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.39
3dup_A		300	MUTT/nudix family protein; nudix superfamily hydro	98.34
2dho_A		235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	98.27
2pny_A		246	Isopentenyl-diphosphate delta-isomerase 2; caroten	98.26
3bho_A		208	Cleavage and polyadenylation specificity factor su	98.13

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*	Back alignment and structure

Probab=100.00  E-value=8.4e-70  Score=524.19  Aligned_cols=280  Identities=41%  Similarity=0.762  Sum_probs=247.7

Q ss_pred             ccccCcCCCCCCCCCeeEeeCCCCccccceecCCCcCCCcccCCCCCCCC-CCCCCCC-cccCccccccCCccceeeeec
Q psy13138         34 YMVDRNFGEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSENV-NKYVNKFNELDGYIDRRRCCN  111 (362)
Q Consensus        34 ~~~~~~r~~~Yp~s~~~R~~Vp~~~v~~W~~~~~~Y~P~~yt~~~~~~~~-waD~~~~-~~~~~~~N~~Dg~v~R~S~~~  111 (362)
                      ..|++||+++||+|+|+||+||++|| +|+++||+|+||+||||+++++| ||||++. +.+.++||++||.|||+|+ +
T Consensus         2 ~~~~~~~~~~y~~~~~~r~~v~~~~~-~w~~~~~~Y~p~~yt~~~~~~~~~~~d~~~~~~~~~~~~n~~d~~v~R~s~-~   79 (292)
T 1q33_A            2 NSHNKARTSPYPGSKVERSQVPNEKV-GWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFNEKDGHVERKSK-N   79 (292)
T ss_dssp             CCCSGGGCSSCTTSCCCCCCCCGGGC-STTSCCTTCCCEEEECHHHHTCCTTSCCCTTCTTCCCCTTSEETTEECCCT-T
T ss_pred             CcccccccCcCCCCCcEEEeCCcccc-ccccccCCcCCCcccChhhccCCCCCCCCcCcccccccccccCCCcceeec-c
Confidence            35889999999999999999999999 99999999999999999999999 9999997 4567999999999999999 9


Q ss_pred             eeeEeeCCCCCCCCCCCCcccccccccCccCCCccceEEEEEeeecCCCCeEeccCCCCCeeEEEEEEe--CCeeeCcee
Q psy13138        112 VKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKF--NGEWGIPGG  189 (362)
Q Consensus       112 g~y~vd~~~G~P~NP~GRTGl~GRG~L~rwGPNhAad~VVtRw~~~~~G~iv~~~~~~k~vLevLlIkR--~g~WaLPGG  189 (362)
                      |.|.|  .+|+|+||+||||++|||+|++|||||++|+|||||+++++|.++.+..++++.|+||+++|  .|.|+||||
T Consensus        80 g~~~~--~~g~p~np~Grtg~~gr~~l~~wgp~~a~~~vv~~~~~~~~g~~~~~~~~g~~~l~vLl~~r~~~g~W~lPGG  157 (292)
T 1q33_A           80 GLYEI--ENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGG  157 (292)
T ss_dssp             SCCCE--ETTEECCTTCCCSEEEEETCSSSEEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCE
T ss_pred             cceec--cCCcccCCCccccccCcccccccCccccceeeeeeecccccCceeeeccCCCCceEEEEEEecCCCcEeCCCc
Confidence            99999  89999999999999999999999999999999999999999998887666778999999999  799999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCccEEEEEEEEEEecCCCcc
Q psy13138        190 FIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHF  269 (362)
Q Consensus       190 ~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDnAWietva~~~h~~~g~~~  269 (362)
                      +|++||++.+||+|||.||||+.+..+..++..+...++++++.++..+|.++.+||+++|++|+++++|.++...++.+
T Consensus       158 ~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~~~  237 (292)
T 1q33_A          158 MVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIM  237 (292)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCCcccEEEEEEEEEEeCCCccc
Confidence            99999999999999999999998543322232222356777753356889999999999999999999999998766544


Q ss_pred             cccCCCCCCcccceEEEecCCCCCCCcCHHHHHHHHHHHhcCccccce
Q psy13138        270 MALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHWYAYV  317 (362)
Q Consensus       270 ~~~~l~a~dda~~v~W~~vd~~lpL~asH~~iL~~a~~~~~a~~~~~p  317 (362)
                      +...+.+++|+.+++|+++++...|+++|+.||+++++.++++|....
T Consensus       238 ~~~~~~~~~E~~~~~W~~~del~~L~~~h~~il~~~~~~~~a~~~~~~  285 (292)
T 1q33_A          238 DNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDS  285 (292)
T ss_dssp             TTCCCCCCTTCSEEEEEECCTTCCCSTTHHHHHHHHHHHHTCCCCSCC
T ss_pred             cccccCCCCccceEEEEEcccCcccCHhHHHHHHHHHHHhcCcccCCC
Confidence            434556678899999999995556999999999999999999987754

PyMOL of 1q33

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6	Back alignment and structure

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6	Back alignment and structure

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*	Back alignment and structure

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*	Back alignment and structure

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*	Back alignment and structure

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}	Back alignment and structure

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}	Back alignment and structure

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}	Back alignment and structure

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*	Back alignment and structure

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A	Back alignment and structure

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}	Back alignment and structure

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B	Back alignment and structure

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}	Back alignment and structure

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1	Back alignment and structure

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}	Back alignment and structure

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A	Back alignment and structure

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}	Back alignment and structure

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}	Back alignment and structure

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}	Back alignment and structure

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*	Back alignment and structure

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*	Back alignment and structure

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A	Back alignment and structure

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}	Back alignment and structure

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A	Back alignment and structure

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A	Back alignment and structure

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}	Back alignment and structure

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}	Back alignment and structure

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1	Back alignment and structure

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}	Back alignment and structure

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0	Back alignment and structure

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}	Back alignment and structure

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}	Back alignment and structure

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0	Back alignment and structure

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A	Back alignment and structure

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}	Back alignment and structure

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*	Back alignment and structure

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}	Back alignment and structure

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}	Back alignment and structure

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}	Back alignment and structure

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A	Back alignment and structure

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}	Back alignment and structure

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1	Back alignment and structure

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A	Back alignment and structure

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2	Back alignment and structure

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*	Back alignment and structure

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*	Back alignment and structure

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*	Back alignment and structure

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*	Back alignment and structure

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*	Back alignment and structure

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A	Back alignment and structure

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3	Back alignment and structure

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}	Back alignment and structure

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*	Back alignment and structure

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*	Back alignment and structure

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}	Back alignment and structure

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*	Back alignment and structure

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A	Back alignment and structure

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*	Back alignment and structure

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A	Back alignment and structure

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*	Back alignment and structure

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*	Back alignment and structure

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A	Back alignment and structure

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A	Back alignment and structure

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*	Back alignment and structure

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A	Back alignment and structure

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}	Back alignment and structure

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}	Back alignment and structure

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}	Back alignment and structure

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}	Back alignment and structure

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*	Back alignment and structure

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}	Back alignment and structure

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		362
d1q33a_		292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	9e-68
d1u20a1		196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	5e-05
d2azwa1		147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	0.002
d2a6ta2		151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	0.002
d1k2ea_		152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	0.003

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  213 bits (543), Expect = 9e-68
 Identities = 114/274 (41%), Positives = 161/274 (58%), Gaps = 8/274 (2%)

Query: 44  YPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSENVNKYVN-KFNELD 101
           YP S V R ++P EK   W    + Y P  +   SV+  P WAD +      + KFNE D
Sbjct: 12  YPGSKVERSQVPNEKVG-WLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFNEKD 70

Query: 102 GYIDRRRCCNVKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGD 161
           G+++R+    + YE++   GRP NP+GRTG+ GRGLLGRWGPNH+A  I+TRW RD +G+
Sbjct: 71  GHVERKSKNGL-YEIE--NGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGN 127

Query: 162 KVTMPSSGKPLLEFVTVK--FNGEWGIPGGFIEGKETYMDRGRKEFLEEALNASNMTAKE 219
           K+  P SGK +L+FV +K    GEW IPGG ++  E      ++EF EEALN+   T+ E
Sbjct: 128 KIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAE 187

Query: 220 SKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHFMALPLSPGDG 279
            + I + L  +   +   +Y+GY+ D RNTDNAW+E      HD+ GE    L L  GD 
Sbjct: 188 KREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDD 247

Query: 280 AEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHW 313
           A  VKW+ ++  +    +H  F+K+V +   AHW
Sbjct: 248 AGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHW 281

PyMOL of d1q33a_

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196	Back information, alignment and structure

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147	Back information, alignment and structure

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151	Back information, alignment and structure

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		362
d1q33a_		292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	100.0
d2fb1a2		147	Hypothetical protein BT0354, N-terminal domain {Ba	99.84
d2fmla2		202	Hypothetical protein EF2700, N-terminal domain {En	99.83
d1ktga_		137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.67
d1vcda1		126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.58
d1xsba_		153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.54
d1k2ea_		152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.53
d2b0va1		146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.53
d1vk6a2		131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.53
d1irya_		156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.47
d2azwa1		147	Hypothetical protein EF1141 {Enterococcus faecalis	99.46
d1ryaa_		160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.45
d1jkna_		165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.42
d2a6ta2		151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.4
d2b06a1		155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.4
d2fvva1		135	Diphosphoinositol polyphosphate phosphohydrolase {	99.4
d1sjya_		158	Hypothetical protein DR1025 {Deinococcus radiodura	99.35
d1puna_		129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.34
d1nqza_		187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.24
d2fkba1		161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.18
d2o5fa1		162	Hypothetical protein DR0079 {Deinococcus radiodura	99.14
d1u20a1		196	U8 snorna-binding protein x29 {African clawed frog	99.1
d1hzta_		153	Isopentenyl diphosphate isomerase {Escherichia col	99.05
d1vhza_		186	ADP compounds hydrolase NudE {Escherichia coli [Ta	98.94
d1v8ya_		158	ADP-ribose pyrophosphatase {Thermus thermophilus [	98.93
d1mqea_		202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	98.87
d1rrqa2		127	Adenine glycosylase MutY, C-terminal domain {Bacil	98.87
d1g0sa_		209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	98.58
d1x51a1		142	A/G-specific adenine DNA glycosylase {Human (Homo	98.23
d1viua_		189	ADP-ribose pyrophosphatase homologue YffH {Escheri	98.07

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-86  Score=639.16  Aligned_cols=280  Identities=41%  Similarity=0.762  Sum_probs=262.9

Q ss_pred             ccccCcCCCCCCCCCeeEeeCCCCccccceecCCCcCCCcccCCCCCCCC-CCCCCCC-cccCccccccCCccceeeeec
Q psy13138         34 YMVDRNFGEFYPRSNVTRLKLPKEKYYVWEFALRSYNPEYFVHPSVIGQP-WADSENV-NKYVNKFNELDGYIDRRRCCN  111 (362)
Q Consensus        34 ~~~~~~r~~~Yp~s~~~R~~Vp~~~v~~W~~~~~~Y~P~~yt~~~~~~~~-waD~~~~-~~~~~~~N~~Dg~v~R~S~~~  111 (362)
                      ..|+|||++.||+|+|+||+|||+|| +|+++||+|+||+||||+|+++| ||||+.. ..+.++||++||.|||+|+ +
T Consensus         2 ~~h~~~r~~~yp~~~~~r~~vp~~~v-~W~~~~~~y~p~~yt~~~v~~~~~wad~~~~~~~~~~~~n~~d~~~~r~s~-~   79 (292)
T d1q33a_           2 NSHNKARTSPYPGSKVERSQVPNEKV-GWLVEWQDYKPVEYTAVSVLAGPRWADPQISESNFSPKFNEKDGHVERKSK-N   79 (292)
T ss_dssp             CCCSGGGCSSCTTSCCCCCCCCGGGC-STTSCCTTCCCEEEECHHHHTCCTTSCCCTTCTTCCCCTTSEETTEECCCT-T
T ss_pred             chhhhhhcCCCCCCCceeecCCcccc-CccccCCCCCCCeeeCcccccCCCccCCCccccccCccccccCcceeeeec-C
Confidence            46999999999999999999999999 99999999999999999998877 9999986 5678999999999999999 9


Q ss_pred             eeeEeeCCCCCCCCCCCCcccccccccCccCCCccceEEEEEeeecCCCCeEeccCCCCCeeEEEEEEe--CCeeeCcee
Q psy13138        112 VKYELDYNTGRPLNPSGRTGICGRGLLGRWGPNHSAFLIVTRWFRDHNGDKVTMPSSGKPLLEFVTVKF--NGEWGIPGG  189 (362)
Q Consensus       112 g~y~vd~~~G~P~NP~GRTGl~GRG~L~rwGPNhAad~VVtRw~~~~~G~iv~~~~~~k~vLevLlIkR--~g~WaLPGG  189 (362)
                      |.|.+  .+|+|+||+|||||+|||+|||||||||||||||||+++++|.++++..+++++||||+|+|  .|.|+||||
T Consensus        80 ~~y~~--~~g~P~NP~GrTG~~grg~l~~wGpNhAadpivTR~~r~~~g~~~~~~~~g~~~LqvLlIkR~d~g~WaLPGG  157 (292)
T d1q33a_          80 GLYEI--ENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGG  157 (292)
T ss_dssp             SCCCE--ETTEECCTTCCCSEEEEETCSSSEEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECCCE
T ss_pred             Ccccc--cCCCccCCCcccccccCcccCccCccccccEEEecccccCCCCeEEecCCCCceeEEEEEEecCCCcEeCCcc
Confidence            99999  89999999999999999999999999999999999999999999998889999999999999  899999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHhccCceEEEecccccCCCCCccEEEEEEEEEEecCCCcc
Q psy13138        190 FIEGKETYMDRGRKEFLEEALNASNMTAKESKSILKHLETVMDDNCHFVYRGYMKDERNTDNAWVEGAVTTVHDKKGEHF  269 (362)
Q Consensus       190 ~Vd~GEsl~~aa~REl~EEtGl~~~~s~~~~~~~~~~l~~lfs~~g~~vy~gyvdDpRNTDnAWietva~~~h~~~g~~~  269 (362)
                      |||+||++.+||+|||.||||+++.........+...+.++++..+..+|+||++|||||||+||+|++|++|+..++..
T Consensus       158 ~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprntd~aw~etva~~~h~~~~~~~  237 (292)
T d1q33a_         158 MVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIM  237 (292)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSSTTT
T ss_pred             cCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCCCCCCEEEEEEEEEEEcccccc
Confidence            99999999999999999999999876655666666778888887578999999999999999999999999999988877


Q ss_pred             cccCCCCCCcccceEEEecCCCCCCCcCHHHHHHHHHHHhcCccccce
Q psy13138        270 MALPLSPGDGAEDVKWLIVHSDMTFNPTHKTFMKVVTDIHGAHWYAYV  317 (362)
Q Consensus       270 ~~~~l~a~dda~~v~W~~vd~~lpL~asH~~iL~~a~~~~~a~~~~~p  317 (362)
                      +.+.+++++|+.+++|+++++.++|+++|.+||++|++.++|||.+.+
T Consensus       238 ~~~~l~~~dEa~~v~W~~vde~~~L~~~H~~il~~aa~~~~Ah~~e~~  285 (292)
T d1q33a_         238 DNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDS  285 (292)
T ss_dssp             TTCCCCCCTTCSEEEEEECCTTCCCSTTHHHHHHHHHHHHTCCCCSCC
T ss_pred             cccccCCCCchheEEEEEhhccccchhhHHHHHHHHHHHHhccccCCC
Confidence            778888999999999999997777999999999999999999998765

PyMOL of d1q33a_

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}	Back information, alignment and structure

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}	Back information, alignment and structure

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure